AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0518670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0518670 MtrunA17_Chr1g0199571 92.308 91 7 0 9 99 127 217 2.07e-52 171
Msa0518670 MtrunA17_Chr1g0156811 58.427 89 37 0 9 97 127 215 1.10e-32 118
Msa0518670 MtrunA17_Chr4g0037111 56.044 91 40 0 9 99 127 217 1.31e-32 115
Msa0518670 MtrunA17_Chr7g0246311 35.484 93 57 2 8 98 124 215 6.77e-13 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0518670 AT5G04220.3 62.637 91 34 0 9 99 65 155 1.60e-35 126
Msa0518670 AT5G04220.2 62.637 91 34 0 9 99 127 217 2.70e-35 126
Msa0518670 AT2G20990.1 54.639 97 44 0 3 99 121 217 1.19e-32 119
Msa0518670 AT2G20990.3 54.639 97 44 0 3 99 121 217 1.34e-32 119
Msa0518670 AT2G20990.2 57.143 91 39 0 9 99 127 217 1.44e-32 119
Msa0518670 AT1G20080.2 50.515 97 48 0 3 99 121 217 7.24e-31 114
Msa0518670 AT1G20080.3 50.515 97 48 0 3 99 121 217 7.24e-31 114
Msa0518670 AT1G20080.4 50.515 97 48 0 3 99 121 217 7.24e-31 114
Msa0518670 AT1G20080.1 50.515 97 48 0 3 99 121 217 7.24e-31 114
Msa0518670 AT1G20080.5 50.515 97 48 0 3 99 121 217 7.24e-31 114
Msa0518670 AT1G05500.1 32.990 97 64 1 3 98 120 216 1.03e-13 65.5
Msa0518670 AT3G61050.2 36.559 93 56 2 8 98 124 215 1.63e-13 65.1
Msa0518670 AT3G61050.1 36.559 93 56 2 8 98 124 215 1.63e-13 65.1
Msa0518670 AT1G05500.2 40.278 72 42 1 28 98 1 72 5.55e-12 60.5

Find 56 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACAGCCTCATGTGGATTT+TGG 0.130792 3_4:-70502761 Msa0518670:intron
TAGTGTTGAGATTCCTATTA+AGG 0.189939 3_4:-70503476 Msa0518670:five_prime_UTR
TCAAAGTTGAGAGGCTAAAT+TGG 0.241187 3_4:+70503852 None:intergenic
TTCTGCAGGTATGAAAGTTT+TGG 0.273201 3_4:-70503180 Msa0518670:intron
AACAATGCCAGTTTAACTTT+TGG 0.280661 3_4:+70503438 None:intergenic
TTTGGAGCAACACCCTTAAT+AGG 0.284160 3_4:+70503463 None:intergenic
TGCAAGGTCAATACTATGTT+TGG 0.291324 3_4:+70503104 None:intergenic
TCTAACTTTCATCACATTCA+TGG 0.315827 3_4:+70503800 None:intergenic
GCTAAGATCAGCAAAATTTC+AGG 0.326164 3_4:-70503385 Msa0518670:intron
GAGAGAGCTGTGGCGGATTC+CGG 0.340791 3_4:+70502632 None:intergenic
GGAAACAAATGAAAAGGAAT+TGG 0.343840 3_4:-70503159 Msa0518670:CDS
CCAAAATCCAAAAGTTAAAC+TGG 0.349476 3_4:-70503445 Msa0518670:five_prime_UTR
GCAGATAAGTTTAAGACCTT+TGG 0.357838 3_4:-70502939 Msa0518670:CDS
AAAAGTTAAACTGGCATTGT+TGG 0.398909 3_4:-70503436 Msa0518670:five_prime_UTR
AGTGTTGAGATTCCTATTAA+GGG 0.409795 3_4:-70503475 Msa0518670:five_prime_UTR
AAAGATTGTGGTGTCTTTGA+TGG 0.416050 3_4:-70502894 Msa0518670:CDS
GTGTAGCGGAGGCAGGGAGG+TGG 0.422043 3_4:-70503964 Msa0518670:intron
AGACATTGGGATGATGGGTT+TGG 0.424062 3_4:-70503875 Msa0518670:five_prime_UTR
TATTGCATTCCTTGCAATGA+TGG 0.437005 3_4:+70503898 None:intergenic
GCAATAAGACATTGGGATGA+TGG 0.439230 3_4:-70503881 Msa0518670:five_prime_UTR
TTGCTAACTATAGAAAGAAA+TGG 0.440469 3_4:-70503758 Msa0518670:intron
GCAAGGTCAATACTATGTTT+GGG 0.443699 3_4:+70503105 None:intergenic
ATGAGTGAATACATGTCAAA+TGG 0.450120 3_4:+70504549 None:intergenic
ATGTCTGGTGTAGCGGAGGC+AGG 0.450530 3_4:-70503971 Msa0518670:intron
TAATGAAACAATTGCTCTAC+CGG 0.451479 3_4:-70502651 Msa0518670:three_prime_UTR
TCATGAAACAAGTCATCAAA+TGG 0.463122 3_4:-70503136 Msa0518670:CDS
CAAGGAATGCAATAAGACAT+TGG 0.491395 3_4:-70503889 Msa0518670:five_prime_UTR
AAGGAATGCAATAAGACATT+GGG 0.493762 3_4:-70503888 Msa0518670:five_prime_UTR
TGTAGCGGAGGCAGGGAGGT+GGG 0.498715 3_4:-70503963 Msa0518670:intron
CAATAAGACATTGGGATGAT+GGG 0.504343 3_4:-70503880 Msa0518670:five_prime_UTR
TTTGGGTTGGCGATATCTGG+AGG 0.509662 3_4:-70502743 Msa0518670:CDS
ACCACAATCTTTGCAAAACA+TGG 0.526489 3_4:+70502905 None:intergenic
GTCTATGAAGATCAAAGTGC+AGG 0.534460 3_4:-70503075 Msa0518670:intron
TTGGGTTGGCGATATCTGGA+GGG 0.536736 3_4:-70502742 Msa0518670:CDS
ATCCGCCACAGCTCTCTCCA+TGG 0.543560 3_4:-70502627 Msa0518670:three_prime_UTR
TCAATTAATTCAAAGTTGAG+AGG 0.557443 3_4:+70503843 None:intergenic
TGTGGTGTCTTTGATGGAGA+AGG 0.563558 3_4:-70502888 Msa0518670:intron
AAACAAGTCATCAAATGGAC+TGG 0.565498 3_4:-70503131 Msa0518670:CDS
GTTCAATTTACAGCCTCATG+TGG 0.577586 3_4:-70502768 Msa0518670:intron
GAGGTCAAAACCATGTTCCA+TGG 0.583571 3_4:+70502610 None:intergenic
TGTCTGGTGTAGCGGAGGCA+GGG 0.584181 3_4:-70503970 Msa0518670:intron
TTCCATGGAGAGAGCTGTGG+CGG 0.594000 3_4:+70502625 None:intergenic
TCTTTCTATAGTTAGCAAAG+TGG 0.597790 3_4:+70503763 None:intergenic
ACAGCTCTCTCCATGGAACA+TGG 0.598176 3_4:-70502620 Msa0518670:three_prime_UTR
CTGGTGTAGCGGAGGCAGGG+AGG 0.603912 3_4:-70503967 Msa0518670:intron
TCATCAACATTAGCCTCACA+AGG 0.630986 3_4:-70504449 Msa0518670:intron
TGAAGTGTATTCATACCTTG+AGG 0.646155 3_4:+70502591 None:intergenic
AAAGGTCTTAAACTTATCTG+CGG 0.650638 3_4:+70502941 None:intergenic
TGGGTTGGCGATATCTGGAG+GGG 0.654158 3_4:-70502741 Msa0518670:CDS
CTTCATAGACAACACATGCA+AGG 0.656238 3_4:+70503088 None:intergenic
TCTACTGCACCATCATTGCA+AGG 0.665556 3_4:-70503907 Msa0518670:five_prime_UTR
ATGTTCCATGGAGAGAGCTG+TGG 0.669038 3_4:+70502622 None:intergenic
GCCAACCCAAAATCCACATG+AGG 0.676621 3_4:+70502755 None:intergenic
CATGGAAGTGTAGACACCAA+AGG 0.678495 3_4:+70502923 None:intergenic
GTGAACATAAGCGAAATGCA+AGG 0.684278 3_4:-70503409 Msa0518670:exon
ACACGCCGAAGAAAACTGTG+AGG 0.784742 3_4:+70503930 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTATGTTTTGTTTTT+AGG - chr3_4:70503687-70503706 Msa0518670:intron 10.0%
!!! ATTATTATGTTTTGTTTTTA+GGG - chr3_4:70503688-70503707 Msa0518670:intron 10.0%
!!! TATTATTATGTTTTGTTTTT+AGG - chr3_4:70503687-70503706 Msa0518670:intron 10.0%
!!! ATTATTATGTTTTGTTTTTA+GGG - chr3_4:70503688-70503707 Msa0518670:intron 10.0%
!! AATTATTTATCAAATAAGAA+GGG + chr3_4:70504497-70504516 None:intergenic 10.0%
!! TAATTATTTATCAAATAAGA+AGG + chr3_4:70504498-70504517 None:intergenic 10.0%
!!! TATTATTATGTTTTGTTTTT+AGG - chr3_4:70503687-70503706 Msa0518670:intron 10.0%
!!! ATTATTATGTTTTGTTTTTA+GGG - chr3_4:70503688-70503707 Msa0518670:intron 10.0%
!!! TATTATTATGTTTTGTTTTT+AGG - chr3_4:70503687-70503706 Msa0518670:intron 10.0%
!!! ATTATTATGTTTTGTTTTTA+GGG - chr3_4:70503688-70503707 Msa0518670:intron 10.0%
!! AATTATTTATCAAATAAGAA+GGG + chr3_4:70504497-70504516 None:intergenic 10.0%
!! TAATTATTTATCAAATAAGA+AGG + chr3_4:70504498-70504517 None:intergenic 10.0%
!! AACATAATAATAAGAATGAT+TGG + chr3_4:70503762-70503781 None:intergenic 15.0%
!! AACATAATAATAAGAATGAT+TGG + chr3_4:70503762-70503781 None:intergenic 15.0%
!! AAAAATAAACACAAGAAAAC+AGG + chr3_4:70502627-70502646 None:intergenic 20.0%
!! AAACAAATCAAACACAAATA+AGG + chr3_4:70502914-70502933 None:intergenic 20.0%
!!! GGATCATTTAAAACATATTA+GGG + chr3_4:70503008-70503027 None:intergenic 20.0%
!!! TGGATCATTTAAAACATATT+AGG + chr3_4:70503009-70503028 None:intergenic 20.0%
!! ATTTGAAGAATGACAAATAT+GGG + chr3_4:70503035-70503054 None:intergenic 20.0%
!! TATTTGAAGAATGACAAATA+TGG + chr3_4:70503036-70503055 None:intergenic 20.0%
!! ATATAATTTACCATGTTGTT+TGG - chr3_4:70503122-70503141 Msa0518670:CDS 20.0%
!!! TAGCTTATGAAATATGATTT+TGG - chr3_4:70503195-70503214 Msa0518670:intron 20.0%
!!! ACAAAATGATTTTGTGATAA+TGG - chr3_4:70503579-70503598 Msa0518670:intron 20.0%
!! AAAAATAAACACAAGAAAAC+AGG + chr3_4:70502627-70502646 None:intergenic 20.0%
!! AAACAAATCAAACACAAATA+AGG + chr3_4:70502914-70502933 None:intergenic 20.0%
!!! GGATCATTTAAAACATATTA+GGG + chr3_4:70503008-70503027 None:intergenic 20.0%
!!! TGGATCATTTAAAACATATT+AGG + chr3_4:70503009-70503028 None:intergenic 20.0%
!! ATTTGAAGAATGACAAATAT+GGG + chr3_4:70503035-70503054 None:intergenic 20.0%
!! TATTTGAAGAATGACAAATA+TGG + chr3_4:70503036-70503055 None:intergenic 20.0%
!! ATATAATTTACCATGTTGTT+TGG - chr3_4:70503122-70503141 Msa0518670:CDS 20.0%
!!! TAGCTTATGAAATATGATTT+TGG - chr3_4:70503195-70503214 Msa0518670:intron 20.0%
!!! ACAAAATGATTTTGTGATAA+TGG - chr3_4:70503579-70503598 Msa0518670:intron 20.0%
! ACATATTAGGGTGATAAATT+TGG + chr3_4:70502996-70503015 None:intergenic 25.0%
!!! TTATATTTTGAACTCTAACC+TGG + chr3_4:70503108-70503127 None:intergenic 25.0%
!! AGTTATTGTGTTTTGTCATT+TGG - chr3_4:70503218-70503237 Msa0518670:intron 25.0%
!! TTTCTTCAAGATTTTGTGTT+TGG - chr3_4:70503259-70503278 Msa0518670:intron 25.0%
! TATGAGATTGAATTTATGTC+TGG - chr3_4:70503301-70503320 Msa0518670:intron 25.0%
! TCAATTAATTCAAAGTTGAG+AGG + chr3_4:70503447-70503466 None:intergenic 25.0%
! TTGCTAACTATAGAAAGAAA+TGG - chr3_4:70503529-70503548 Msa0518670:intron 25.0%
!!! TAAGTGTCATTTAGTGATAT+TGG - chr3_4:70503615-70503634 Msa0518670:intron 25.0%
!!! AAGTGTCATTTAGTGATATT+GGG - chr3_4:70503616-70503635 Msa0518670:intron 25.0%
! TGTAAAGCTTTCAAAATACA+AGG - chr3_4:70503943-70503962 Msa0518670:five_prime_UTR 25.0%
! TAATCCTCTCTTTCATTTAT+AGG - chr3_4:70504046-70504065 Msa0518670:intron 25.0%
! AATCCTCTCTTTCATTTATA+GGG - chr3_4:70504047-70504066 Msa0518670:intron 25.0%
!!! AGTTTTGGAAACAAATGAAA+AGG - chr3_4:70504122-70504141 Msa0518670:intron 25.0%
!! TATTTTCTAATTTTCGGTGA+GGG + chr3_4:70504251-70504270 None:intergenic 25.0%
!! TTATTTTCTAATTTTCGGTG+AGG + chr3_4:70504252-70504271 None:intergenic 25.0%
!!! TGATTTTGATTTTTCTCAGT+TGG - chr3_4:70504300-70504319 Msa0518670:intron 25.0%
! TTTCTTCTAATTTCACTTCT+TGG - chr3_4:70504438-70504457 Msa0518670:intron 25.0%
! TTCTTCTAATTTCACTTCTT+GGG - chr3_4:70504439-70504458 Msa0518670:intron 25.0%
! ACATATTAGGGTGATAAATT+TGG + chr3_4:70502996-70503015 None:intergenic 25.0%
!!! TTATATTTTGAACTCTAACC+TGG + chr3_4:70503108-70503127 None:intergenic 25.0%
!! AGTTATTGTGTTTTGTCATT+TGG - chr3_4:70503218-70503237 Msa0518670:intron 25.0%
!! TTTCTTCAAGATTTTGTGTT+TGG - chr3_4:70503259-70503278 Msa0518670:intron 25.0%
! TATGAGATTGAATTTATGTC+TGG - chr3_4:70503301-70503320 Msa0518670:intron 25.0%
! TCAATTAATTCAAAGTTGAG+AGG + chr3_4:70503447-70503466 None:intergenic 25.0%
! TTGCTAACTATAGAAAGAAA+TGG - chr3_4:70503529-70503548 Msa0518670:intron 25.0%
!!! TAAGTGTCATTTAGTGATAT+TGG - chr3_4:70503615-70503634 Msa0518670:intron 25.0%
!!! AAGTGTCATTTAGTGATATT+GGG - chr3_4:70503616-70503635 Msa0518670:intron 25.0%
! TGTAAAGCTTTCAAAATACA+AGG - chr3_4:70503943-70503962 Msa0518670:five_prime_UTR 25.0%
! TAATCCTCTCTTTCATTTAT+AGG - chr3_4:70504046-70504065 Msa0518670:intron 25.0%
! AATCCTCTCTTTCATTTATA+GGG - chr3_4:70504047-70504066 Msa0518670:intron 25.0%
!!! AGTTTTGGAAACAAATGAAA+AGG - chr3_4:70504122-70504141 Msa0518670:intron 25.0%
!! TATTTTCTAATTTTCGGTGA+GGG + chr3_4:70504251-70504270 None:intergenic 25.0%
!! TTATTTTCTAATTTTCGGTG+AGG + chr3_4:70504252-70504271 None:intergenic 25.0%
!!! TGATTTTGATTTTTCTCAGT+TGG - chr3_4:70504300-70504319 Msa0518670:intron 25.0%
! TTTCTTCTAATTTCACTTCT+TGG - chr3_4:70504438-70504457 Msa0518670:intron 25.0%
! TTCTTCTAATTTCACTTCTT+GGG - chr3_4:70504439-70504458 Msa0518670:intron 25.0%
ATGAGTGAATACATGTCAAA+TGG + chr3_4:70502741-70502760 None:intergenic 30.0%
TAAAAACATCAAACCTTGTG+AGG + chr3_4:70502854-70502873 None:intergenic 30.0%
! AAGATTTTGTGTTTGGTCAT+TGG - chr3_4:70503266-70503285 Msa0518670:intron 30.0%
AAGGAATGCAATAAGACATT+GGG - chr3_4:70503399-70503418 Msa0518670:exon 30.0%
TCTAACTTTCATCACATTCA+TGG + chr3_4:70503490-70503509 None:intergenic 30.0%
TCTTTCTATAGTTAGCAAAG+TGG + chr3_4:70503527-70503546 None:intergenic 30.0%
AATGGTACGATAGATAAGTA+AGG - chr3_4:70503547-70503566 Msa0518670:intron 30.0%
ATGGTACGATAGATAAGTAA+GGG - chr3_4:70503548-70503567 Msa0518670:intron 30.0%
!! AGTGTCATTTAGTGATATTG+GGG - chr3_4:70503617-70503636 Msa0518670:intron 30.0%
AAGAATGAAAGTGATGATCA+TGG + chr3_4:70503668-70503687 None:intergenic 30.0%
TAGTGTTGTGATTCCTATTA+AGG - chr3_4:70503728-70503747 Msa0518670:intron 30.0%
AGTGTTGTGATTCCTATTAA+GGG - chr3_4:70503729-70503748 Msa0518670:intron 30.0%
! TAGTGTTGAGATTCCTATTA+AGG - chr3_4:70503811-70503830 Msa0518670:five_prime_UTR 30.0%
! AGTGTTGAGATTCCTATTAA+GGG - chr3_4:70503812-70503831 Msa0518670:five_prime_UTR 30.0%
!! CCAGTTTAACTTTTGGATTT+TGG + chr3_4:70503845-70503864 None:intergenic 30.0%
CCAAAATCCAAAAGTTAAAC+TGG - chr3_4:70503842-70503861 Msa0518670:five_prime_UTR 30.0%
!! AACAATGCCAGTTTAACTTT+TGG + chr3_4:70503852-70503871 None:intergenic 30.0%
AAAAGTTAAACTGGCATTGT+TGG - chr3_4:70503851-70503870 Msa0518670:five_prime_UTR 30.0%
! CTTTGTTTCTTTGATGTGTT+TGG - chr3_4:70503983-70504002 Msa0518670:intron 30.0%
ATCCTCTCTTTCATTTATAG+GGG - chr3_4:70504048-70504067 Msa0518670:intron 30.0%
GGAAACAAATGAAAAGGAAT+TGG - chr3_4:70504128-70504147 Msa0518670:intron 30.0%
TCATGAAACAAGTCATCAAA+TGG - chr3_4:70504151-70504170 Msa0518670:intron 30.0%
AAAGGTCTTAAACTTATCTG+CGG + chr3_4:70504349-70504368 None:intergenic 30.0%
TAATGAAACAATTGCTCTAC+CGG - chr3_4:70504636-70504655 Msa0518670:five_prime_UTR 30.0%
ATGAGTGAATACATGTCAAA+TGG + chr3_4:70502741-70502760 None:intergenic 30.0%
TAAAAACATCAAACCTTGTG+AGG + chr3_4:70502854-70502873 None:intergenic 30.0%
! AAGATTTTGTGTTTGGTCAT+TGG - chr3_4:70503266-70503285 Msa0518670:intron 30.0%
AAGGAATGCAATAAGACATT+GGG - chr3_4:70503399-70503418 Msa0518670:exon 30.0%
TCTAACTTTCATCACATTCA+TGG + chr3_4:70503490-70503509 None:intergenic 30.0%
TCTTTCTATAGTTAGCAAAG+TGG + chr3_4:70503527-70503546 None:intergenic 30.0%
AATGGTACGATAGATAAGTA+AGG - chr3_4:70503547-70503566 Msa0518670:intron 30.0%
ATGGTACGATAGATAAGTAA+GGG - chr3_4:70503548-70503567 Msa0518670:intron 30.0%
!! AGTGTCATTTAGTGATATTG+GGG - chr3_4:70503617-70503636 Msa0518670:intron 30.0%
AAGAATGAAAGTGATGATCA+TGG + chr3_4:70503668-70503687 None:intergenic 30.0%
TAGTGTTGTGATTCCTATTA+AGG - chr3_4:70503728-70503747 Msa0518670:intron 30.0%
AGTGTTGTGATTCCTATTAA+GGG - chr3_4:70503729-70503748 Msa0518670:intron 30.0%
! TAGTGTTGAGATTCCTATTA+AGG - chr3_4:70503811-70503830 Msa0518670:five_prime_UTR 30.0%
! AGTGTTGAGATTCCTATTAA+GGG - chr3_4:70503812-70503831 Msa0518670:five_prime_UTR 30.0%
!! CCAGTTTAACTTTTGGATTT+TGG + chr3_4:70503845-70503864 None:intergenic 30.0%
CCAAAATCCAAAAGTTAAAC+TGG - chr3_4:70503842-70503861 Msa0518670:five_prime_UTR 30.0%
!! AACAATGCCAGTTTAACTTT+TGG + chr3_4:70503852-70503871 None:intergenic 30.0%
AAAAGTTAAACTGGCATTGT+TGG - chr3_4:70503851-70503870 Msa0518670:five_prime_UTR 30.0%
! CTTTGTTTCTTTGATGTGTT+TGG - chr3_4:70503983-70504002 Msa0518670:intron 30.0%
ATCCTCTCTTTCATTTATAG+GGG - chr3_4:70504048-70504067 Msa0518670:intron 30.0%
GGAAACAAATGAAAAGGAAT+TGG - chr3_4:70504128-70504147 Msa0518670:intron 30.0%
TCATGAAACAAGTCATCAAA+TGG - chr3_4:70504151-70504170 Msa0518670:intron 30.0%
AAAGGTCTTAAACTTATCTG+CGG + chr3_4:70504349-70504368 None:intergenic 30.0%
TAATGAAACAATTGCTCTAC+CGG - chr3_4:70504636-70504655 Msa0518670:five_prime_UTR 30.0%
TGAAGAATGACAAATATGGG+AGG + chr3_4:70503032-70503051 None:intergenic 35.0%
TTCTTCGATACCAAACAACA+TGG + chr3_4:70503135-70503154 None:intergenic 35.0%
TGAATTTATGTCTGGTGTAG+CGG - chr3_4:70503309-70503328 Msa0518670:intron 35.0%
TATTGCATTCCTTGCAATGA+TGG + chr3_4:70503392-70503411 None:intergenic 35.0%
CAAGGAATGCAATAAGACAT+TGG - chr3_4:70503398-70503417 Msa0518670:exon 35.0%
CAATAAGACATTGGGATGAT+GGG - chr3_4:70503407-70503426 Msa0518670:exon 35.0%
TCAAAGTTGAGAGGCTAAAT+TGG + chr3_4:70503438-70503457 None:intergenic 35.0%
GCTAAGATCAGCAAAATTTC+AGG - chr3_4:70503902-70503921 Msa0518670:five_prime_UTR 35.0%
ACAAAGCAACAAAATCACAG+AGG + chr3_4:70503969-70503988 None:intergenic 35.0%
TACCCCTATAAATGAAAGAG+AGG + chr3_4:70504053-70504072 None:intergenic 35.0%
ATTGTTTGTAGCAATTCTGC+AGG - chr3_4:70504093-70504112 Msa0518670:intron 35.0%
! TTCTGCAGGTATGAAAGTTT+TGG - chr3_4:70504107-70504126 Msa0518670:intron 35.0%
AAACAAGTCATCAAATGGAC+TGG - chr3_4:70504156-70504175 Msa0518670:intron 35.0%
GCAAGGTCAATACTATGTTT+GGG + chr3_4:70504185-70504204 None:intergenic 35.0%
TGCAAGGTCAATACTATGTT+TGG + chr3_4:70504186-70504205 None:intergenic 35.0%
! GCAGATAAGTTTAAGACCTT+TGG - chr3_4:70504348-70504367 Msa0518670:intron 35.0%
! TCCATGTTTTGCAAAGATTG+TGG - chr3_4:70504381-70504400 Msa0518670:intron 35.0%
ACCACAATCTTTGCAAAACA+TGG + chr3_4:70504385-70504404 None:intergenic 35.0%
AAAGATTGTGGTGTCTTTGA+TGG - chr3_4:70504393-70504412 Msa0518670:intron 35.0%
TGAAGAATGACAAATATGGG+AGG + chr3_4:70503032-70503051 None:intergenic 35.0%
TTCTTCGATACCAAACAACA+TGG + chr3_4:70503135-70503154 None:intergenic 35.0%
TGAATTTATGTCTGGTGTAG+CGG - chr3_4:70503309-70503328 Msa0518670:intron 35.0%
TATTGCATTCCTTGCAATGA+TGG + chr3_4:70503392-70503411 None:intergenic 35.0%
CAAGGAATGCAATAAGACAT+TGG - chr3_4:70503398-70503417 Msa0518670:exon 35.0%
CAATAAGACATTGGGATGAT+GGG - chr3_4:70503407-70503426 Msa0518670:exon 35.0%
TCAAAGTTGAGAGGCTAAAT+TGG + chr3_4:70503438-70503457 None:intergenic 35.0%
GCTAAGATCAGCAAAATTTC+AGG - chr3_4:70503902-70503921 Msa0518670:five_prime_UTR 35.0%
ACAAAGCAACAAAATCACAG+AGG + chr3_4:70503969-70503988 None:intergenic 35.0%
TACCCCTATAAATGAAAGAG+AGG + chr3_4:70504053-70504072 None:intergenic 35.0%
ATTGTTTGTAGCAATTCTGC+AGG - chr3_4:70504093-70504112 Msa0518670:intron 35.0%
! TTCTGCAGGTATGAAAGTTT+TGG - chr3_4:70504107-70504126 Msa0518670:intron 35.0%
AAACAAGTCATCAAATGGAC+TGG - chr3_4:70504156-70504175 Msa0518670:intron 35.0%
GCAAGGTCAATACTATGTTT+GGG + chr3_4:70504185-70504204 None:intergenic 35.0%
TGCAAGGTCAATACTATGTT+TGG + chr3_4:70504186-70504205 None:intergenic 35.0%
! GCAGATAAGTTTAAGACCTT+TGG - chr3_4:70504348-70504367 Msa0518670:intron 35.0%
! TCCATGTTTTGCAAAGATTG+TGG - chr3_4:70504381-70504400 Msa0518670:intron 35.0%
ACCACAATCTTTGCAAAACA+TGG + chr3_4:70504385-70504404 None:intergenic 35.0%
AAAGATTGTGGTGTCTTTGA+TGG - chr3_4:70504393-70504412 Msa0518670:intron 35.0%
! TCATCAACATTAGCCTCACA+AGG - chr3_4:70502838-70502857 Msa0518670:intron 40.0%
CTGTATGCTAGATATGGACT+GGG + chr3_4:70502946-70502965 None:intergenic 40.0%
CAGTCCATATCTAGCATACA+GGG - chr3_4:70502945-70502964 Msa0518670:CDS 40.0%
CAATCCCTGTATGCTAGATA+TGG + chr3_4:70502952-70502971 None:intergenic 40.0%
AGAATGACAAATATGGGAGG+TGG + chr3_4:70503029-70503048 None:intergenic 40.0%
GCTCTGCAGATTTATTTACC+AGG - chr3_4:70503087-70503106 Msa0518670:CDS 40.0%
! GCAATCCTCACAGTTTTCTT+CGG - chr3_4:70503352-70503371 Msa0518670:intron 40.0%
GCAATAAGACATTGGGATGA+TGG - chr3_4:70503406-70503425 Msa0518670:exon 40.0%
GTCATTTAGTGATATTGGGG+TGG - chr3_4:70503620-70503639 Msa0518670:intron 40.0%
ATTGGAGCAACACCCTTAAT+AGG + chr3_4:70503744-70503763 None:intergenic 40.0%
! TTTGGAGCAACACCCTTAAT+AGG + chr3_4:70503827-70503846 None:intergenic 40.0%
GTGAACATAAGCGAAATGCA+AGG - chr3_4:70503878-70503897 Msa0518670:five_prime_UTR 40.0%
CTTCATAGACAACACATGCA+AGG + chr3_4:70504202-70504221 None:intergenic 40.0%
GTCTATGAAGATCAAAGTGC+AGG - chr3_4:70504212-70504231 Msa0518670:intron 40.0%
! TTCTAATTTTCGGTGAGGGT+AGG + chr3_4:70504247-70504266 None:intergenic 40.0%
TGTCTTTGATGGAGAAGGTA+AGG - chr3_4:70504404-70504423 Msa0518670:intron 40.0%
GTCTTTGATGGAGAAGGTAA+GGG - chr3_4:70504405-70504424 Msa0518670:intron 40.0%
GTTCAATTTACAGCCTCATG+TGG - chr3_4:70504519-70504538 Msa0518670:five_prime_UTR 40.0%
! TTACAGCCTCATGTGGATTT+TGG - chr3_4:70504526-70504545 Msa0518670:five_prime_UTR 40.0%
! TACAGCCTCATGTGGATTTT+GGG - chr3_4:70504527-70504546 Msa0518670:five_prime_UTR 40.0%
! TCATCAACATTAGCCTCACA+AGG - chr3_4:70502838-70502857 Msa0518670:intron 40.0%
CTGTATGCTAGATATGGACT+GGG + chr3_4:70502946-70502965 None:intergenic 40.0%
CAGTCCATATCTAGCATACA+GGG - chr3_4:70502945-70502964 Msa0518670:CDS 40.0%
CAATCCCTGTATGCTAGATA+TGG + chr3_4:70502952-70502971 None:intergenic 40.0%
AGAATGACAAATATGGGAGG+TGG + chr3_4:70503029-70503048 None:intergenic 40.0%
GCTCTGCAGATTTATTTACC+AGG - chr3_4:70503087-70503106 Msa0518670:CDS 40.0%
! GCAATCCTCACAGTTTTCTT+CGG - chr3_4:70503352-70503371 Msa0518670:intron 40.0%
GCAATAAGACATTGGGATGA+TGG - chr3_4:70503406-70503425 Msa0518670:exon 40.0%
GTCATTTAGTGATATTGGGG+TGG - chr3_4:70503620-70503639 Msa0518670:intron 40.0%
ATTGGAGCAACACCCTTAAT+AGG + chr3_4:70503744-70503763 None:intergenic 40.0%
! TTTGGAGCAACACCCTTAAT+AGG + chr3_4:70503827-70503846 None:intergenic 40.0%
GTGAACATAAGCGAAATGCA+AGG - chr3_4:70503878-70503897 Msa0518670:five_prime_UTR 40.0%
CTTCATAGACAACACATGCA+AGG + chr3_4:70504202-70504221 None:intergenic 40.0%
GTCTATGAAGATCAAAGTGC+AGG - chr3_4:70504212-70504231 Msa0518670:intron 40.0%
! TTCTAATTTTCGGTGAGGGT+AGG + chr3_4:70504247-70504266 None:intergenic 40.0%
TGTCTTTGATGGAGAAGGTA+AGG - chr3_4:70504404-70504423 Msa0518670:intron 40.0%
GTCTTTGATGGAGAAGGTAA+GGG - chr3_4:70504405-70504424 Msa0518670:intron 40.0%
GTTCAATTTACAGCCTCATG+TGG - chr3_4:70504519-70504538 Msa0518670:five_prime_UTR 40.0%
! TTACAGCCTCATGTGGATTT+TGG - chr3_4:70504526-70504545 Msa0518670:five_prime_UTR 40.0%
! TACAGCCTCATGTGGATTTT+GGG - chr3_4:70504527-70504546 Msa0518670:five_prime_UTR 40.0%
CCTGTATGCTAGATATGGAC+TGG + chr3_4:70502947-70502966 None:intergenic 45.0%
CCAGTCCATATCTAGCATAC+AGG - chr3_4:70502944-70502963 Msa0518670:CDS 45.0%
ATTTATGTCTGGTGTAGCGG+AGG - chr3_4:70503312-70503331 Msa0518670:intron 45.0%
TCTACTGCACCATCATTGCA+AGG - chr3_4:70503380-70503399 Msa0518670:intron 45.0%
!! AGACATTGGGATGATGGGTT+TGG - chr3_4:70503412-70503431 Msa0518670:exon 45.0%
! CATGGAAGTGTAGACACCAA+AGG + chr3_4:70504367-70504386 None:intergenic 45.0%
TGTGGTGTCTTTGATGGAGA+AGG - chr3_4:70504399-70504418 Msa0518670:intron 45.0%
!!! GATTTTGGGTTGGCGATATC+TGG - chr3_4:70504541-70504560 Msa0518670:five_prime_UTR 45.0%
GAGGTCAAAACCATGTTCCA+TGG + chr3_4:70504680-70504699 None:intergenic 45.0%
!!! GGAACATGGTTTTGACCTCA+AGG - chr3_4:70504681-70504700 Msa0518670:five_prime_UTR 45.0%
CCTGTATGCTAGATATGGAC+TGG + chr3_4:70502947-70502966 None:intergenic 45.0%
CCAGTCCATATCTAGCATAC+AGG - chr3_4:70502944-70502963 Msa0518670:CDS 45.0%
ATTTATGTCTGGTGTAGCGG+AGG - chr3_4:70503312-70503331 Msa0518670:intron 45.0%
TCTACTGCACCATCATTGCA+AGG - chr3_4:70503380-70503399 Msa0518670:intron 45.0%
!! AGACATTGGGATGATGGGTT+TGG - chr3_4:70503412-70503431 Msa0518670:exon 45.0%
! CATGGAAGTGTAGACACCAA+AGG + chr3_4:70504367-70504386 None:intergenic 45.0%
TGTGGTGTCTTTGATGGAGA+AGG - chr3_4:70504399-70504418 Msa0518670:intron 45.0%
!!! GATTTTGGGTTGGCGATATC+TGG - chr3_4:70504541-70504560 Msa0518670:five_prime_UTR 45.0%
GAGGTCAAAACCATGTTCCA+TGG + chr3_4:70504680-70504699 None:intergenic 45.0%
!!! AATTATTATTTTCTAATTTT+CGG + chr3_4:70504257-70504276 None:intergenic 5.0%
!!! AATTATTATTTTCTAATTTT+CGG + chr3_4:70504257-70504276 None:intergenic 5.0%
ACACGCCGAAGAAAACTGTG+AGG + chr3_4:70503360-70503379 None:intergenic 50.0%
!! GCCTCATGTGGATTTTGGGT+TGG - chr3_4:70504531-70504550 Msa0518670:five_prime_UTR 50.0%
GCCAACCCAAAATCCACATG+AGG + chr3_4:70504535-70504554 None:intergenic 50.0%
!! TTTGGGTTGGCGATATCTGG+AGG - chr3_4:70504544-70504563 Msa0518670:five_prime_UTR 50.0%
!! TTGGGTTGGCGATATCTGGA+GGG - chr3_4:70504545-70504564 Msa0518670:five_prime_UTR 50.0%
ATGTTCCATGGAGAGAGCTG+TGG + chr3_4:70504668-70504687 None:intergenic 50.0%
ACAGCTCTCTCCATGGAACA+TGG - chr3_4:70504667-70504686 Msa0518670:five_prime_UTR 50.0%
ACACGCCGAAGAAAACTGTG+AGG + chr3_4:70503360-70503379 None:intergenic 50.0%
!! GCCTCATGTGGATTTTGGGT+TGG - chr3_4:70504531-70504550 Msa0518670:five_prime_UTR 50.0%
GCCAACCCAAAATCCACATG+AGG + chr3_4:70504535-70504554 None:intergenic 50.0%
!! TTTGGGTTGGCGATATCTGG+AGG - chr3_4:70504544-70504563 Msa0518670:five_prime_UTR 50.0%
!! TTGGGTTGGCGATATCTGGA+GGG - chr3_4:70504545-70504564 Msa0518670:five_prime_UTR 50.0%
ATGTTCCATGGAGAGAGCTG+TGG + chr3_4:70504668-70504687 None:intergenic 50.0%
ACAGCTCTCTCCATGGAACA+TGG - chr3_4:70504667-70504686 Msa0518670:five_prime_UTR 50.0%
!! TGGGTTGGCGATATCTGGAG+GGG - chr3_4:70504546-70504565 Msa0518670:five_prime_UTR 55.0%
TTCCATGGAGAGAGCTGTGG+CGG + chr3_4:70504665-70504684 None:intergenic 55.0%
!! TGGGTTGGCGATATCTGGAG+GGG - chr3_4:70504546-70504565 Msa0518670:five_prime_UTR 55.0%
TTCCATGGAGAGAGCTGTGG+CGG + chr3_4:70504665-70504684 None:intergenic 55.0%
! ATGTCTGGTGTAGCGGAGGC+AGG - chr3_4:70503316-70503335 Msa0518670:intron 60.0%
! TGTCTGGTGTAGCGGAGGCA+GGG - chr3_4:70503317-70503336 Msa0518670:intron 60.0%
!! GAGAGAGCTGTGGCGGATTC+CGG + chr3_4:70504658-70504677 None:intergenic 60.0%
ATCCGCCACAGCTCTCTCCA+TGG - chr3_4:70504660-70504679 Msa0518670:five_prime_UTR 60.0%
! ATGTCTGGTGTAGCGGAGGC+AGG - chr3_4:70503316-70503335 Msa0518670:intron 60.0%
! TGTCTGGTGTAGCGGAGGCA+GGG - chr3_4:70503317-70503336 Msa0518670:intron 60.0%
!! GAGAGAGCTGTGGCGGATTC+CGG + chr3_4:70504658-70504677 None:intergenic 60.0%
ATCCGCCACAGCTCTCTCCA+TGG - chr3_4:70504660-70504679 Msa0518670:five_prime_UTR 60.0%
! TGTAGCGGAGGCAGGGAGGT+GGG - chr3_4:70503324-70503343 Msa0518670:intron 65.0%
! TGTAGCGGAGGCAGGGAGGT+GGG - chr3_4:70503324-70503343 Msa0518670:intron 65.0%
! CTGGTGTAGCGGAGGCAGGG+AGG - chr3_4:70503320-70503339 Msa0518670:intron 70.0%
! GTGTAGCGGAGGCAGGGAGG+TGG - chr3_4:70503323-70503342 Msa0518670:intron 70.0%
! CTGGTGTAGCGGAGGCAGGG+AGG - chr3_4:70503320-70503339 Msa0518670:intron 70.0%
! GTGTAGCGGAGGCAGGGAGG+TGG - chr3_4:70503323-70503342 Msa0518670:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 70502606 70504703 70502606 ID=Msa0518670;Name=Msa0518670
chr3_4 mRNA 70502606 70504703 70502606 ID=Msa0518670-mRNA-1;Parent=Msa0518670;Name=Msa0518670-mRNA-1;_AED=0.02;_eAED=0.02;_QI=577|1|1|1|0.8|0.66|6|124|99
chr3_4 exon 70502606 70502777 70502606 ID=Msa0518670-mRNA-1:exon:19214;Parent=Msa0518670-mRNA-1
chr3_4 exon 70502889 70502990 70502889 ID=Msa0518670-mRNA-1:exon:19213;Parent=Msa0518670-mRNA-1
chr3_4 exon 70503076 70503194 70503076 ID=Msa0518670-mRNA-1:exon:19212;Parent=Msa0518670-mRNA-1
chr3_4 exon 70503386 70503517 70503386 ID=Msa0518670-mRNA-1:exon:19211;Parent=Msa0518670-mRNA-1
chr3_4 exon 70503759 70503980 70503759 ID=Msa0518670-mRNA-1:exon:19210;Parent=Msa0518670-mRNA-1
chr3_4 exon 70504450 70504703 70504450 ID=Msa0518670-mRNA-1:exon:19209;Parent=Msa0518670-mRNA-1
chr3_4 five_prime_UTR 70504450 70504703 70504450 ID=Msa0518670-mRNA-1:five_prime_utr;Parent=Msa0518670-mRNA-1
chr3_4 five_prime_UTR 70503759 70503980 70503759 ID=Msa0518670-mRNA-1:five_prime_utr;Parent=Msa0518670-mRNA-1
chr3_4 five_prime_UTR 70503417 70503517 70503417 ID=Msa0518670-mRNA-1:five_prime_utr;Parent=Msa0518670-mRNA-1
chr3_4 CDS 70503386 70503416 70503386 ID=Msa0518670-mRNA-1:cds;Parent=Msa0518670-mRNA-1
chr3_4 CDS 70503076 70503194 70503076 ID=Msa0518670-mRNA-1:cds;Parent=Msa0518670-mRNA-1
chr3_4 CDS 70502889 70502990 70502889 ID=Msa0518670-mRNA-1:cds;Parent=Msa0518670-mRNA-1
chr3_4 CDS 70502730 70502777 70502730 ID=Msa0518670-mRNA-1:cds;Parent=Msa0518670-mRNA-1
chr3_4 three_prime_UTR 70502606 70502729 70502606 ID=Msa0518670-mRNA-1:three_prime_utr;Parent=Msa0518670-mRNA-1
Gene Sequence

>Msa0518670

ATGCAAGGTGCTAAGATCAGCAAAATTTCAGGTATGAAAGTTTTGGAAACAAATGAAAAGGAATTGGTCATGAAACAAGTCATCAAATGGACTGGCAACCCAAACATAGTATTGACCTTGCATGTGTTGTCTATGAAGATCAAAGTGCAGTTGGTAGACTTACAAGTTTTTGCAACGCCGCAGATAAGTTTAAGACCTTTGGTGTCTACACTTCCATGTTTTGCAAAGATTGTGGTGTCTTTGATGGAGAAGCCTCATGTGGATTTTGGGTTGGCGATATCTGGAGGGGACATCATATAG

Protein sequence

>Msa0518670

MQGAKISKISGMKVLETNEKELVMKQVIKWTGNPNIVLTLHVLSMKIKVQLVDLQVFATPQISLRPLVSTLPCFAKIVVSLMEKPHVDFGLAISGGDII*