AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1253020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 33 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGGATAGAATGGTATTAAA+AGG 0.219863 8_2:+50198723 Msa1253020:exon
CTAGTCTTTATTTCCATTAG+TGG 0.307809 8_2:+50200212 Msa1253020:three_prime_UTR
CTGGTCTTGTTGCTGGGAGC+TGG 0.316668 8_2:+50200156 Msa1253020:three_prime_UTR
AAGGAACTTTATAAAACTTA+AGG 0.380287 8_2:-50200371 None:intergenic
TGAAATTAAGCGAAAACATA+AGG 0.380397 8_2:-50200390 None:intergenic
GGTTAAGAGAAGAATTAGTT+TGG 0.388719 8_2:+50199925 Msa1253020:intron
TGCTGGGAGCTGGCTGCAGC+GGG 0.406548 8_2:+50200166 Msa1253020:three_prime_UTR
CAAGAATGAAATGCAAACTA+TGG 0.428127 8_2:+50198761 Msa1253020:CDS
TTTGTGTTCTAGTGGTTAGT+GGG 0.451182 8_2:+50200278 Msa1253020:three_prime_UTR
GTTTGTGTTCTAGTGGTTAG+TGG 0.460802 8_2:+50200277 Msa1253020:three_prime_UTR
GTGAGGTGAATGGTGATTTG+AGG 0.461694 8_2:+50199954 Msa1253020:three_prime_UTR
TTATAGCCGTGGTGGCTTTG+TGG 0.474791 8_2:+50200189 Msa1253020:three_prime_UTR
AGGATAGAATGGTATTAAAA+GGG 0.488471 8_2:+50198724 Msa1253020:exon
TTGCTGGGAGCTGGCTGCAG+CGG 0.522395 8_2:+50200165 Msa1253020:three_prime_UTR
TTGGCCTCTTGTGAGGTGAA+TGG 0.526844 8_2:+50199944 Msa1253020:three_prime_UTR
CAATTCTCTAGAGGATAGAA+TGG 0.530815 8_2:+50198713 Msa1253020:exon
ATGCTTCTTATGAGCTGCAA+AGG 0.533894 8_2:+50199015 Msa1253020:exon
TGTTCTAGTGGTTAGTGGGG+TGG 0.539109 8_2:+50200282 Msa1253020:three_prime_UTR
CCATATAAAACCACTGCACA+TGG 0.540046 8_2:-50200346 None:intergenic
TGTTTAGGGGCCATGTGCAG+TGG 0.548137 8_2:+50200336 Msa1253020:three_prime_UTR
AATTAGTTTGGCCTCTTGTG+AGG 0.555483 8_2:+50199937 Msa1253020:three_prime_UTR
TTGTGTTCTAGTGGTTAGTG+GGG 0.558885 8_2:+50200279 Msa1253020:three_prime_UTR
TAGAACACAAACTCAATCCC+AGG 0.560061 8_2:-50200266 None:intergenic
GGATTGAGTTTGTGTTCTAG+TGG 0.564493 8_2:+50200270 Msa1253020:three_prime_UTR
CAAGTCTATCAATTCTCTAG+AGG 0.569018 8_2:+50198704 Msa1253020:five_prime_UTR
GCTGCAGCGGGTTATAGCCG+TGG 0.578545 8_2:+50200178 Msa1253020:three_prime_UTR
ATCACCATTCACCTCACAAG+AGG 0.594909 8_2:-50199948 None:intergenic
CGATGAGCAGCAGAAAGAGA+AGG 0.612760 8_2:+50199043 Msa1253020:three_prime_UTR
GCAGCGGGTTATAGCCGTGG+TGG 0.619905 8_2:+50200181 Msa1253020:three_prime_UTR
GAATGAAATGCAAACTATGG+AGG 0.629276 8_2:+50198764 Msa1253020:CDS
ACAAACTCAATCCCAGGGAG+TGG 0.630710 8_2:-50200260 None:intergenic
GACTAGCCACAAAGCCACCA+CGG 0.651795 8_2:-50200195 None:intergenic
AGAACACAAACTCAATCCCA+GGG 0.675458 8_2:-50200265 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAAAAACTTAAAAAAT+AGG + chr8_2:50199600-50199619 Msa1253020:intron 10.0%
!! AATATATAATAAAACCTAAA+AGG - chr8_2:50199699-50199718 None:intergenic 10.0%
!!! TTTTAGGTTTTATTATATAT+TGG + chr8_2:50199698-50199717 Msa1253020:intron 10.0%
!!! TTTTTTTTTTTATATGTAGA+AGG + chr8_2:50200090-50200109 Msa1253020:intron 10.0%
!! AAAGAAAAAACTTAAAAAAT+AGG + chr8_2:50199600-50199619 Msa1253020:intron 10.0%
!! AATATATAATAAAACCTAAA+AGG - chr8_2:50199699-50199718 None:intergenic 10.0%
!!! TTTTAGGTTTTATTATATAT+TGG + chr8_2:50199698-50199717 Msa1253020:intron 10.0%
!!! TTTTTTTTTTTATATGTAGA+AGG + chr8_2:50200090-50200109 Msa1253020:intron 10.0%
!! AACTCTTATAATACTTATTC+AGG + chr8_2:50198984-50199003 Msa1253020:intron 20.0%
!! ACTCTTATAATACTTATTCA+GGG + chr8_2:50198985-50199004 Msa1253020:intron 20.0%
!! TTTATAAGATGAGTCAATTT+AGG - chr8_2:50199088-50199107 None:intergenic 20.0%
!! AATTGAAATTATGAAACATG+AGG - chr8_2:50199499-50199518 None:intergenic 20.0%
!! TCATGTTTCATAATTTCAAT+TGG + chr8_2:50199498-50199517 Msa1253020:intron 20.0%
!! CTGTTAGATAATAAGTTATT+AGG + chr8_2:50199632-50199651 Msa1253020:intron 20.0%
!! AAGGAACTTTATAAAACTTA+AGG - chr8_2:50200374-50200393 None:intergenic 20.0%
!! AACTCTTATAATACTTATTC+AGG + chr8_2:50198984-50199003 Msa1253020:intron 20.0%
!! ACTCTTATAATACTTATTCA+GGG + chr8_2:50198985-50199004 Msa1253020:intron 20.0%
!! TTTATAAGATGAGTCAATTT+AGG - chr8_2:50199088-50199107 None:intergenic 20.0%
!! AATTGAAATTATGAAACATG+AGG - chr8_2:50199499-50199518 None:intergenic 20.0%
!! TCATGTTTCATAATTTCAAT+TGG + chr8_2:50199498-50199517 Msa1253020:intron 20.0%
!! CTGTTAGATAATAAGTTATT+AGG + chr8_2:50199632-50199651 Msa1253020:intron 20.0%
!! AAGGAACTTTATAAAACTTA+AGG - chr8_2:50200374-50200393 None:intergenic 20.0%
! AGGATAGAATGGTATTAAAA+GGG + chr8_2:50198724-50198743 Msa1253020:exon 25.0%
!! CTTTGAAAATGAAATTAGCA+AGG - chr8_2:50198852-50198871 None:intergenic 25.0%
! TAATTTCATGTCCTGTATTT+GGG + chr8_2:50198937-50198956 Msa1253020:intron 25.0%
! CTCTTATAATACTTATTCAG+GGG + chr8_2:50198986-50199005 Msa1253020:intron 25.0%
! TCATCTTATAAACATGTAGT+AGG + chr8_2:50199096-50199115 Msa1253020:intron 25.0%
!! TACTTTAAACTTTGAAGATG+AGG - chr8_2:50199175-50199194 None:intergenic 25.0%
!!! TTCATTGATTTTTCCTCATT+TGG - chr8_2:50199473-50199492 None:intergenic 25.0%
!! AGAAGATTTCAACTCTAAAA+TGG - chr8_2:50199530-50199549 None:intergenic 25.0%
! TAGCATAACTCATTAAACTA+AGG - chr8_2:50199732-50199751 None:intergenic 25.0%
! TTCCGATTTAATCATGTTTA+TGG + chr8_2:50199887-50199906 Msa1253020:intron 25.0%
! AGCCATAAACATGATTAAAT+CGG - chr8_2:50199892-50199911 None:intergenic 25.0%
!!! GTTTTTTGAATTCTGTTACA+TGG + chr8_2:50200116-50200135 Msa1253020:three_prime_UTR 25.0%
!!! ATTGGCTTTTGTTTTTGTTT+AGG + chr8_2:50200321-50200340 Msa1253020:three_prime_UTR 25.0%
!!! TTGGCTTTTGTTTTTGTTTA+GGG + chr8_2:50200322-50200341 Msa1253020:three_prime_UTR 25.0%
! TGAAATTAAGCGAAAACATA+AGG - chr8_2:50200393-50200412 None:intergenic 25.0%
! AGGATAGAATGGTATTAAAA+GGG + chr8_2:50198724-50198743 Msa1253020:exon 25.0%
!! CTTTGAAAATGAAATTAGCA+AGG - chr8_2:50198852-50198871 None:intergenic 25.0%
! TAATTTCATGTCCTGTATTT+GGG + chr8_2:50198937-50198956 Msa1253020:intron 25.0%
! CTCTTATAATACTTATTCAG+GGG + chr8_2:50198986-50199005 Msa1253020:intron 25.0%
! TCATCTTATAAACATGTAGT+AGG + chr8_2:50199096-50199115 Msa1253020:intron 25.0%
!! TACTTTAAACTTTGAAGATG+AGG - chr8_2:50199175-50199194 None:intergenic 25.0%
!!! TTCATTGATTTTTCCTCATT+TGG - chr8_2:50199473-50199492 None:intergenic 25.0%
!! AGAAGATTTCAACTCTAAAA+TGG - chr8_2:50199530-50199549 None:intergenic 25.0%
! TAGCATAACTCATTAAACTA+AGG - chr8_2:50199732-50199751 None:intergenic 25.0%
! TTCCGATTTAATCATGTTTA+TGG + chr8_2:50199887-50199906 Msa1253020:intron 25.0%
! AGCCATAAACATGATTAAAT+CGG - chr8_2:50199892-50199911 None:intergenic 25.0%
!!! GTTTTTTGAATTCTGTTACA+TGG + chr8_2:50200116-50200135 Msa1253020:three_prime_UTR 25.0%
!!! ATTGGCTTTTGTTTTTGTTT+AGG + chr8_2:50200321-50200340 Msa1253020:three_prime_UTR 25.0%
!!! TTGGCTTTTGTTTTTGTTTA+GGG + chr8_2:50200322-50200341 Msa1253020:three_prime_UTR 25.0%
! TGAAATTAAGCGAAAACATA+AGG - chr8_2:50200393-50200412 None:intergenic 25.0%
GAGGATAGAATGGTATTAAA+AGG + chr8_2:50198723-50198742 Msa1253020:exon 30.0%
CAAGAATGAAATGCAAACTA+TGG + chr8_2:50198761-50198780 Msa1253020:CDS 30.0%
AAATGAAATTAGCAAGGCAA+AGG - chr8_2:50198846-50198865 None:intergenic 30.0%
ACATGAAATTAGTAAAGCAG+AGG - chr8_2:50198928-50198947 None:intergenic 30.0%
CTAATTTCATGTCCTGTATT+TGG + chr8_2:50198936-50198955 Msa1253020:intron 30.0%
AATTTCATGTCCTGTATTTG+GGG + chr8_2:50198938-50198957 Msa1253020:intron 30.0%
TTGATTCCACAGAAGAAATT+GGG - chr8_2:50199250-50199269 None:intergenic 30.0%
! ATTGATTCCACAGAAGAAAT+TGG - chr8_2:50199251-50199270 None:intergenic 30.0%
AATTTCTTCTGTGGAATCAA+TGG + chr8_2:50199250-50199269 Msa1253020:intron 30.0%
! TAAGACAAAGTTCACTCTTT+TGG - chr8_2:50199414-50199433 None:intergenic 30.0%
! TTTTTCCTCATTTGGTTAGT+GGG - chr8_2:50199465-50199484 None:intergenic 30.0%
! ATTTTTCCTCATTTGGTTAG+TGG - chr8_2:50199466-50199485 None:intergenic 30.0%
AGAGAACAAAACAAAAACGA+CGG - chr8_2:50199777-50199796 None:intergenic 30.0%
TTCTCTTAACCTAAAAGAAG+AGG - chr8_2:50199916-50199935 None:intergenic 30.0%
GGTTAAGAGAAGAATTAGTT+TGG + chr8_2:50199925-50199944 Msa1253020:intron 30.0%
! CTAGTCTTTATTTCCATTAG+TGG + chr8_2:50200212-50200231 Msa1253020:three_prime_UTR 30.0%
AACAACAAAAACTCCACTAA+TGG - chr8_2:50200228-50200247 None:intergenic 30.0%
!!! GGTTTTTTACTTTCGTGTAT+TGG + chr8_2:50200303-50200322 Msa1253020:three_prime_UTR 30.0%
!!! TGGCTTTTGTTTTTGTTTAG+GGG + chr8_2:50200323-50200342 Msa1253020:three_prime_UTR 30.0%
GAGGATAGAATGGTATTAAA+AGG + chr8_2:50198723-50198742 Msa1253020:exon 30.0%
CAAGAATGAAATGCAAACTA+TGG + chr8_2:50198761-50198780 Msa1253020:CDS 30.0%
AAATGAAATTAGCAAGGCAA+AGG - chr8_2:50198846-50198865 None:intergenic 30.0%
ACATGAAATTAGTAAAGCAG+AGG - chr8_2:50198928-50198947 None:intergenic 30.0%
CTAATTTCATGTCCTGTATT+TGG + chr8_2:50198936-50198955 Msa1253020:intron 30.0%
AATTTCATGTCCTGTATTTG+GGG + chr8_2:50198938-50198957 Msa1253020:intron 30.0%
TTGATTCCACAGAAGAAATT+GGG - chr8_2:50199250-50199269 None:intergenic 30.0%
! ATTGATTCCACAGAAGAAAT+TGG - chr8_2:50199251-50199270 None:intergenic 30.0%
AATTTCTTCTGTGGAATCAA+TGG + chr8_2:50199250-50199269 Msa1253020:intron 30.0%
! TAAGACAAAGTTCACTCTTT+TGG - chr8_2:50199414-50199433 None:intergenic 30.0%
! TTTTTCCTCATTTGGTTAGT+GGG - chr8_2:50199465-50199484 None:intergenic 30.0%
! ATTTTTCCTCATTTGGTTAG+TGG - chr8_2:50199466-50199485 None:intergenic 30.0%
AGAGAACAAAACAAAAACGA+CGG - chr8_2:50199777-50199796 None:intergenic 30.0%
TTCTCTTAACCTAAAAGAAG+AGG - chr8_2:50199916-50199935 None:intergenic 30.0%
GGTTAAGAGAAGAATTAGTT+TGG + chr8_2:50199925-50199944 Msa1253020:intron 30.0%
! CTAGTCTTTATTTCCATTAG+TGG + chr8_2:50200212-50200231 Msa1253020:three_prime_UTR 30.0%
AACAACAAAAACTCCACTAA+TGG - chr8_2:50200228-50200247 None:intergenic 30.0%
!!! GGTTTTTTACTTTCGTGTAT+TGG + chr8_2:50200303-50200322 Msa1253020:three_prime_UTR 30.0%
!!! TGGCTTTTGTTTTTGTTTAG+GGG + chr8_2:50200323-50200342 Msa1253020:three_prime_UTR 30.0%
CAAGTCTATCAATTCTCTAG+AGG + chr8_2:50198704-50198723 Msa1253020:five_prime_UTR 35.0%
! CAATTCTCTAGAGGATAGAA+TGG + chr8_2:50198713-50198732 Msa1253020:exon 35.0%
GAATGAAATGCAAACTATGG+AGG + chr8_2:50198764-50198783 Msa1253020:CDS 35.0%
CAAACTAATACCCCAAATAC+AGG - chr8_2:50198951-50198970 None:intergenic 35.0%
GAAAGAGAAGGTAGAATTGA+TGG + chr8_2:50199055-50199074 Msa1253020:intron 35.0%
TTCTATAACAGCACTGTATC+TGG + chr8_2:50199140-50199159 Msa1253020:intron 35.0%
TGATTCCACAGAAGAAATTG+GGG - chr8_2:50199249-50199268 None:intergenic 35.0%
TCCTATTGCATGATGAAGTT+TGG + chr8_2:50199368-50199387 Msa1253020:intron 35.0%
ACCAAACTTCATCATGCAAT+AGG - chr8_2:50199372-50199391 None:intergenic 35.0%
AGTTATTAGGCTCATGTTGT+TGG + chr8_2:50199645-50199664 Msa1253020:intron 35.0%
GTTATTAGGCTCATGTTGTT+GGG + chr8_2:50199646-50199665 Msa1253020:intron 35.0%
! GAAGTTAGTAGACTCCTTTT+AGG + chr8_2:50199682-50199701 Msa1253020:intron 35.0%
ACAATACATAGAGCTAGAGA+CGG - chr8_2:50199807-50199826 None:intergenic 35.0%
! TTATGGCTTCCTCTTCTTTT+AGG + chr8_2:50199904-50199923 Msa1253020:intron 35.0%
!! TTGAGGCTTGTTCTTTTACT+TGG + chr8_2:50199971-50199990 Msa1253020:three_prime_UTR 35.0%
!! ATTGTCTTTGGGGTTCTATT+CGG + chr8_2:50200012-50200031 Msa1253020:intron 35.0%
TTTGTGTTCTAGTGGTTAGT+GGG + chr8_2:50200278-50200297 Msa1253020:three_prime_UTR 35.0%
CAAGTCTATCAATTCTCTAG+AGG + chr8_2:50198704-50198723 Msa1253020:five_prime_UTR 35.0%
! CAATTCTCTAGAGGATAGAA+TGG + chr8_2:50198713-50198732 Msa1253020:exon 35.0%
GAATGAAATGCAAACTATGG+AGG + chr8_2:50198764-50198783 Msa1253020:CDS 35.0%
CAAACTAATACCCCAAATAC+AGG - chr8_2:50198951-50198970 None:intergenic 35.0%
GAAAGAGAAGGTAGAATTGA+TGG + chr8_2:50199055-50199074 Msa1253020:intron 35.0%
TTCTATAACAGCACTGTATC+TGG + chr8_2:50199140-50199159 Msa1253020:intron 35.0%
TGATTCCACAGAAGAAATTG+GGG - chr8_2:50199249-50199268 None:intergenic 35.0%
TCCTATTGCATGATGAAGTT+TGG + chr8_2:50199368-50199387 Msa1253020:intron 35.0%
ACCAAACTTCATCATGCAAT+AGG - chr8_2:50199372-50199391 None:intergenic 35.0%
AGTTATTAGGCTCATGTTGT+TGG + chr8_2:50199645-50199664 Msa1253020:intron 35.0%
GTTATTAGGCTCATGTTGTT+GGG + chr8_2:50199646-50199665 Msa1253020:intron 35.0%
! GAAGTTAGTAGACTCCTTTT+AGG + chr8_2:50199682-50199701 Msa1253020:intron 35.0%
ACAATACATAGAGCTAGAGA+CGG - chr8_2:50199807-50199826 None:intergenic 35.0%
! TTATGGCTTCCTCTTCTTTT+AGG + chr8_2:50199904-50199923 Msa1253020:intron 35.0%
!! TTGAGGCTTGTTCTTTTACT+TGG + chr8_2:50199971-50199990 Msa1253020:three_prime_UTR 35.0%
!! ATTGTCTTTGGGGTTCTATT+CGG + chr8_2:50200012-50200031 Msa1253020:intron 35.0%
TTTGTGTTCTAGTGGTTAGT+GGG + chr8_2:50200278-50200297 Msa1253020:three_prime_UTR 35.0%
ATGCTTCTTATGAGCTGCAA+AGG + chr8_2:50199015-50199034 Msa1253020:exon 40.0%
ACAAAACAAAAACGACGGTC+AGG - chr8_2:50199772-50199791 None:intergenic 40.0%
! AATTAGTTTGGCCTCTTGTG+AGG + chr8_2:50199937-50199956 Msa1253020:three_prime_UTR 40.0%
!! AGGCTTGTTCTTTTACTTGG+AGG + chr8_2:50199974-50199993 Msa1253020:three_prime_UTR 40.0%
!! GGCTTGTTCTTTTACTTGGA+GGG + chr8_2:50199975-50199994 Msa1253020:three_prime_UTR 40.0%
! GCTTGTTCTTTTACTTGGAG+GGG + chr8_2:50199976-50199995 Msa1253020:three_prime_UTR 40.0%
!! TTGTCTTTGGGGTTCTATTC+GGG + chr8_2:50200013-50200032 Msa1253020:intron 40.0%
!! GGTCTTCTGATTCACTTTTC+TGG + chr8_2:50200137-50200156 Msa1253020:three_prime_UTR 40.0%
!!! ACTTTTCTGGTCTTGTTGCT+GGG + chr8_2:50200150-50200169 Msa1253020:three_prime_UTR 40.0%
AGAACACAAACTCAATCCCA+GGG - chr8_2:50200268-50200287 None:intergenic 40.0%
TAGAACACAAACTCAATCCC+AGG - chr8_2:50200269-50200288 None:intergenic 40.0%
GGATTGAGTTTGTGTTCTAG+TGG + chr8_2:50200270-50200289 Msa1253020:three_prime_UTR 40.0%
GTTTGTGTTCTAGTGGTTAG+TGG + chr8_2:50200277-50200296 Msa1253020:three_prime_UTR 40.0%
TTGTGTTCTAGTGGTTAGTG+GGG + chr8_2:50200279-50200298 Msa1253020:three_prime_UTR 40.0%
CCATATAAAACCACTGCACA+TGG - chr8_2:50200349-50200368 None:intergenic 40.0%
!!! CCATGTGCAGTGGTTTTATA+TGG + chr8_2:50200346-50200365 Msa1253020:three_prime_UTR 40.0%
ATGCTTCTTATGAGCTGCAA+AGG + chr8_2:50199015-50199034 Msa1253020:exon 40.0%
ACAAAACAAAAACGACGGTC+AGG - chr8_2:50199772-50199791 None:intergenic 40.0%
! AATTAGTTTGGCCTCTTGTG+AGG + chr8_2:50199937-50199956 Msa1253020:three_prime_UTR 40.0%
!! AGGCTTGTTCTTTTACTTGG+AGG + chr8_2:50199974-50199993 Msa1253020:three_prime_UTR 40.0%
!! GGCTTGTTCTTTTACTTGGA+GGG + chr8_2:50199975-50199994 Msa1253020:three_prime_UTR 40.0%
! GCTTGTTCTTTTACTTGGAG+GGG + chr8_2:50199976-50199995 Msa1253020:three_prime_UTR 40.0%
!! TTGTCTTTGGGGTTCTATTC+GGG + chr8_2:50200013-50200032 Msa1253020:intron 40.0%
!! GGTCTTCTGATTCACTTTTC+TGG + chr8_2:50200137-50200156 Msa1253020:three_prime_UTR 40.0%
!!! ACTTTTCTGGTCTTGTTGCT+GGG + chr8_2:50200150-50200169 Msa1253020:three_prime_UTR 40.0%
AGAACACAAACTCAATCCCA+GGG - chr8_2:50200268-50200287 None:intergenic 40.0%
TAGAACACAAACTCAATCCC+AGG - chr8_2:50200269-50200288 None:intergenic 40.0%
GGATTGAGTTTGTGTTCTAG+TGG + chr8_2:50200270-50200289 Msa1253020:three_prime_UTR 40.0%
GTTTGTGTTCTAGTGGTTAG+TGG + chr8_2:50200277-50200296 Msa1253020:three_prime_UTR 40.0%
TTGTGTTCTAGTGGTTAGTG+GGG + chr8_2:50200279-50200298 Msa1253020:three_prime_UTR 40.0%
CCATATAAAACCACTGCACA+TGG - chr8_2:50200349-50200368 None:intergenic 40.0%
!!! CCATGTGCAGTGGTTTTATA+TGG + chr8_2:50200346-50200365 Msa1253020:three_prime_UTR 40.0%
TTCTGCCCCAATTTCTTCTG+TGG + chr8_2:50199241-50199260 Msa1253020:intron 45.0%
CTCATTTGGTTAGTGGGAGA+AGG - chr8_2:50199459-50199478 None:intergenic 45.0%
CTTCTCCCACTAACCAAATG+AGG + chr8_2:50199457-50199476 Msa1253020:intron 45.0%
ATCACCATTCACCTCACAAG+AGG - chr8_2:50199951-50199970 None:intergenic 45.0%
GTGAGGTGAATGGTGATTTG+AGG + chr8_2:50199954-50199973 Msa1253020:three_prime_UTR 45.0%
! GTTCTTTTACTTGGAGGGGT+TGG + chr8_2:50199980-50199999 Msa1253020:intron 45.0%
AGAACCCCAAAGACAATAGC+AGG - chr8_2:50200009-50200028 None:intergenic 45.0%
!! TTCTATTCGGGTGTTGACTG+TGG + chr8_2:50200025-50200044 Msa1253020:intron 45.0%
!!! CACTTTTCTGGTCTTGTTGC+TGG + chr8_2:50200149-50200168 Msa1253020:three_prime_UTR 45.0%
! ACTTGAATTTTGCCACTCCC+TGG + chr8_2:50200248-50200267 Msa1253020:three_prime_UTR 45.0%
! CTTGAATTTTGCCACTCCCT+GGG + chr8_2:50200249-50200268 Msa1253020:three_prime_UTR 45.0%
TTCTGCCCCAATTTCTTCTG+TGG + chr8_2:50199241-50199260 Msa1253020:intron 45.0%
CTCATTTGGTTAGTGGGAGA+AGG - chr8_2:50199459-50199478 None:intergenic 45.0%
CTTCTCCCACTAACCAAATG+AGG + chr8_2:50199457-50199476 Msa1253020:intron 45.0%
ATCACCATTCACCTCACAAG+AGG - chr8_2:50199951-50199970 None:intergenic 45.0%
GTGAGGTGAATGGTGATTTG+AGG + chr8_2:50199954-50199973 Msa1253020:three_prime_UTR 45.0%
! GTTCTTTTACTTGGAGGGGT+TGG + chr8_2:50199980-50199999 Msa1253020:intron 45.0%
AGAACCCCAAAGACAATAGC+AGG - chr8_2:50200009-50200028 None:intergenic 45.0%
!! TTCTATTCGGGTGTTGACTG+TGG + chr8_2:50200025-50200044 Msa1253020:intron 45.0%
!!! CACTTTTCTGGTCTTGTTGC+TGG + chr8_2:50200149-50200168 Msa1253020:three_prime_UTR 45.0%
! ACTTGAATTTTGCCACTCCC+TGG + chr8_2:50200248-50200267 Msa1253020:three_prime_UTR 45.0%
! CTTGAATTTTGCCACTCCCT+GGG + chr8_2:50200249-50200268 Msa1253020:three_prime_UTR 45.0%
CGATGAGCAGCAGAAAGAGA+AGG + chr8_2:50199043-50199062 Msa1253020:three_prime_UTR 50.0%
TTGGCCTCTTGTGAGGTGAA+TGG + chr8_2:50199944-50199963 Msa1253020:three_prime_UTR 50.0%
! CTTTTACTTGGAGGGGTTGG+TGG + chr8_2:50199983-50200002 Msa1253020:intron 50.0%
TGGTGGCCTGCTATTGTCTT+TGG + chr8_2:50200000-50200019 Msa1253020:intron 50.0%
GGTGGCCTGCTATTGTCTTT+GGG + chr8_2:50200001-50200020 Msa1253020:intron 50.0%
GTGGCCTGCTATTGTCTTTG+GGG + chr8_2:50200002-50200021 Msa1253020:intron 50.0%
!! GTGTTGACTGTGGCATAGCA+GGG + chr8_2:50200035-50200054 Msa1253020:intron 50.0%
TGTGGCATAGCAGGGTTCTT+TGG + chr8_2:50200043-50200062 Msa1253020:intron 50.0%
! TTATAGCCGTGGTGGCTTTG+TGG + chr8_2:50200189-50200208 Msa1253020:three_prime_UTR 50.0%
ACAAACTCAATCCCAGGGAG+TGG - chr8_2:50200263-50200282 None:intergenic 50.0%
TGTTCTAGTGGTTAGTGGGG+TGG + chr8_2:50200282-50200301 Msa1253020:three_prime_UTR 50.0%
CGATGAGCAGCAGAAAGAGA+AGG + chr8_2:50199043-50199062 Msa1253020:three_prime_UTR 50.0%
TTGGCCTCTTGTGAGGTGAA+TGG + chr8_2:50199944-50199963 Msa1253020:three_prime_UTR 50.0%
! CTTTTACTTGGAGGGGTTGG+TGG + chr8_2:50199983-50200002 Msa1253020:intron 50.0%
TGGTGGCCTGCTATTGTCTT+TGG + chr8_2:50200000-50200019 Msa1253020:intron 50.0%
GGTGGCCTGCTATTGTCTTT+GGG + chr8_2:50200001-50200020 Msa1253020:intron 50.0%
GTGGCCTGCTATTGTCTTTG+GGG + chr8_2:50200002-50200021 Msa1253020:intron 50.0%
!! GTGTTGACTGTGGCATAGCA+GGG + chr8_2:50200035-50200054 Msa1253020:intron 50.0%
TGTGGCATAGCAGGGTTCTT+TGG + chr8_2:50200043-50200062 Msa1253020:intron 50.0%
! TTATAGCCGTGGTGGCTTTG+TGG + chr8_2:50200189-50200208 Msa1253020:three_prime_UTR 50.0%
ACAAACTCAATCCCAGGGAG+TGG - chr8_2:50200263-50200282 None:intergenic 50.0%
TGTTCTAGTGGTTAGTGGGG+TGG + chr8_2:50200282-50200301 Msa1253020:three_prime_UTR 50.0%
!! GGTGTTGACTGTGGCATAGC+AGG + chr8_2:50200034-50200053 Msa1253020:intron 55.0%
! GACTAGCCACAAAGCCACCA+CGG - chr8_2:50200198-50200217 None:intergenic 55.0%
TGTTTAGGGGCCATGTGCAG+TGG + chr8_2:50200336-50200355 Msa1253020:three_prime_UTR 55.0%
!! GGTGTTGACTGTGGCATAGC+AGG + chr8_2:50200034-50200053 Msa1253020:intron 55.0%
! GACTAGCCACAAAGCCACCA+CGG - chr8_2:50200198-50200217 None:intergenic 55.0%
TGTTTAGGGGCCATGTGCAG+TGG + chr8_2:50200336-50200355 Msa1253020:three_prime_UTR 55.0%
!! CTGGTCTTGTTGCTGGGAGC+TGG + chr8_2:50200156-50200175 Msa1253020:three_prime_UTR 60.0%
!! CTGGTCTTGTTGCTGGGAGC+TGG + chr8_2:50200156-50200175 Msa1253020:three_prime_UTR 60.0%
TTGCTGGGAGCTGGCTGCAG+CGG + chr8_2:50200165-50200184 Msa1253020:three_prime_UTR 65.0%
!! GCTGCAGCGGGTTATAGCCG+TGG + chr8_2:50200178-50200197 Msa1253020:three_prime_UTR 65.0%
!! GCAGCGGGTTATAGCCGTGG+TGG + chr8_2:50200181-50200200 Msa1253020:three_prime_UTR 65.0%
TTGCTGGGAGCTGGCTGCAG+CGG + chr8_2:50200165-50200184 Msa1253020:three_prime_UTR 65.0%
!! GCTGCAGCGGGTTATAGCCG+TGG + chr8_2:50200178-50200197 Msa1253020:three_prime_UTR 65.0%
!! GCAGCGGGTTATAGCCGTGG+TGG + chr8_2:50200181-50200200 Msa1253020:three_prime_UTR 65.0%
TGCTGGGAGCTGGCTGCAGC+GGG + chr8_2:50200166-50200185 Msa1253020:three_prime_UTR 70.0%
TGCTGGGAGCTGGCTGCAGC+GGG + chr8_2:50200166-50200185 Msa1253020:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 50198680 50200413 50198680 ID=Msa1253020;Name=Msa1253020
chr8_2 mRNA 50198680 50200413 50198680 ID=Msa1253020-mRNA-1;Parent=Msa1253020;Name=Msa1253020-mRNA-1;_AED=0.08;_eAED=0.08;_QI=52|0.66|0.75|1|0.66|0.75|4|414|39
chr8_2 exon 50198680 50198829 50198680 ID=Msa1253020-mRNA-1:exon:15317;Parent=Msa1253020-mRNA-1
chr8_2 exon 50199006 50199064 50199006 ID=Msa1253020-mRNA-1:exon:15318;Parent=Msa1253020-mRNA-1
chr8_2 exon 50199926 50199997 50199926 ID=Msa1253020-mRNA-1:exon:15319;Parent=Msa1253020-mRNA-1
chr8_2 exon 50200109 50200413 50200109 ID=Msa1253020-mRNA-1:exon:15320;Parent=Msa1253020-mRNA-1
chr8_2 five_prime_UTR 50198680 50198731 50198680 ID=Msa1253020-mRNA-1:five_prime_utr;Parent=Msa1253020-mRNA-1
chr8_2 CDS 50198732 50198829 50198732 ID=Msa1253020-mRNA-1:cds;Parent=Msa1253020-mRNA-1
chr8_2 CDS 50199006 50199027 50199006 ID=Msa1253020-mRNA-1:cds;Parent=Msa1253020-mRNA-1
chr8_2 three_prime_UTR 50199028 50199064 50199028 ID=Msa1253020-mRNA-1:three_prime_utr;Parent=Msa1253020-mRNA-1
chr8_2 three_prime_UTR 50199926 50199997 50199926 ID=Msa1253020-mRNA-1:three_prime_utr;Parent=Msa1253020-mRNA-1
chr8_2 three_prime_UTR 50200109 50200413 50200109 ID=Msa1253020-mRNA-1:three_prime_utr;Parent=Msa1253020-mRNA-1
Gene Sequence

>Msa1253020

ATGGTATTAAAAGGGAACTTAGAAAGTATCAAGAATGAAATGCAAACTATGGAGGATCGAGTGAATTGTTTCAAAAACTTTATGCAGATTTATCTTGAGGGTTTTCAATGCTTCTTATGA

Protein sequence

>Msa1253020

MVLKGNLESIKNEMQTMEDRVNCFKNFMQIYLEGFQCFL*