AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0736500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0736500 MtrunA17_Chr5g0433841 96.642 268 7 1 1 268 1 266 0.0 539
Msa0736500 MtrunA17_Chr3g0109801 64.875 279 85 5 1 266 6 284 1.96e-129 368
Msa0736500 MtrunA17_Chr4g0021561 60.177 226 89 1 42 266 31 256 7.44e-98 287
Msa0736500 MtrunA17_Chr5g0435311 56.000 225 98 1 43 266 82 306 3.58e-91 272
Msa0736500 MtrunA17_Chr5g0417701 56.696 224 96 1 43 266 25 247 2.27e-90 268
Msa0736500 MtrunA17_Chr4g0042521 55.357 224 99 1 43 266 25 247 2.67e-89 265
Msa0736500 MtrunA17_Chr3g0092071 56.250 224 97 1 43 266 25 247 8.66e-89 263
Msa0736500 MtrunA17_Chr7g0238681 50.391 256 122 2 12 266 5 256 1.91e-88 263
Msa0736500 MtrunA17_Chr3g0128801 54.018 224 102 1 43 266 31 253 3.62e-88 262
Msa0736500 MtrunA17_Chr3g0128791 54.018 224 102 1 43 266 31 253 1.07e-87 261
Msa0736500 MtrunA17_Chr2g0328261 54.667 225 101 1 43 266 34 258 2.58e-87 260
Msa0736500 MtrunA17_Chr5g0432611 53.947 228 104 1 39 266 25 251 3.90e-87 259
Msa0736500 MtrunA17_Chr3g0107311 54.911 224 100 1 43 266 32 254 1.41e-86 258
Msa0736500 MtrunA17_Chr7g0217661 52.863 227 98 2 42 268 25 242 1.47e-85 255
Msa0736500 MtrunA17_Chr3g0107291 52.361 233 110 1 34 266 29 260 2.77e-85 255
Msa0736500 MtrunA17_Chr4g0031621 55.310 226 100 1 42 266 31 256 1.81e-81 245
Msa0736500 MtrunA17_Chr7g0218751 52.679 224 103 2 42 264 27 248 2.79e-80 242
Msa0736500 MtrunA17_Chr8g0360041 51.101 227 108 2 38 263 26 250 1.36e-78 238
Msa0736500 MtrunA17_Chr1g0193631 50.667 225 108 2 43 264 30 254 6.13e-77 234
Msa0736500 MtrunA17_Chr4g0069711 43.066 274 143 5 3 265 12 283 1.55e-76 234
Msa0736500 MtrunA17_Chr7g0218761 54.412 204 90 2 62 264 8 209 6.83e-76 229
Msa0736500 MtrunA17_Chr7g0218741 51.327 226 106 3 42 265 28 251 2.43e-75 229
Msa0736500 MtrunA17_Chr6g0453341 53.097 226 97 2 43 268 38 254 2.58e-74 227
Msa0736500 MtrunA17_Chr1g0157061 50.000 212 104 1 55 264 27 238 2.13e-73 224
Msa0736500 MtrunA17_Chr7g0271001 47.982 223 113 2 43 262 27 249 1.20e-71 220
Msa0736500 MtrunA17_Chr8g0360721 52.475 202 93 2 62 262 17 216 5.60e-71 217
Msa0736500 MtrunA17_Chr5g0398271 41.288 264 139 2 2 264 11 259 5.36e-67 209
Msa0736500 MtrunA17_Chr4g0057091 45.852 229 119 2 35 262 32 256 8.11e-64 201
Msa0736500 MtrunA17_Chr2g0324181 66.337 101 34 0 166 266 17 117 5.98e-46 150
Msa0736500 MtrunA17_Chr2g0324191 50.000 132 65 1 36 166 21 152 1.34e-40 137
Msa0736500 MtrunA17_Chr4g0022841 53.043 115 54 0 149 263 2 116 1.89e-37 128
Msa0736500 MtrunA17_Chr4g0022851 51.456 103 45 2 38 139 27 125 6.71e-29 106
Msa0736500 MtrunA17_Chr2g0324221 28.390 236 144 7 41 264 33 255 2.36e-23 95.9
Msa0736500 MtrunA17_Chr2g0324201 29.362 235 141 8 42 264 32 253 2.64e-22 92.8
Msa0736500 MtrunA17_Chr4g0021641 30.213 235 139 8 42 264 40 261 3.20e-22 92.8
Msa0736500 MtrunA17_Chr4g0012801 30.833 240 124 11 43 262 42 259 6.41e-22 92.0
Msa0736500 MtrunA17_Chr8g0359971 53.947 76 34 1 188 262 2 77 8.69e-21 84.0
Msa0736500 MtrunA17_Chr7g0231221 29.565 230 133 11 48 261 53 269 2.49e-18 82.4
Msa0736500 MtrunA17_Chr7g0231211 28.755 233 147 10 39 262 43 265 1.11e-17 80.5
Msa0736500 MtrunA17_Chr8g0359981 44.828 87 36 4 85 166 2 81 6.84e-16 72.0
Msa0736500 MtrunA17_Chr4g0038741 26.724 232 136 9 46 262 26 238 3.18e-13 67.8
Msa0736500 MtrunA17_Chr1g0193571 52.727 55 26 0 210 264 3 57 3.05e-12 60.8
Msa0736500 MtrunA17_Chr5g0399811 27.273 231 149 10 46 267 32 252 7.28e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0736500 AT3G03220.1 83.628 226 37 0 42 267 39 264 5.17e-146 410
Msa0736500 AT5G56320.1 58.036 224 93 1 43 266 29 251 2.39e-93 276
Msa0736500 AT5G56320.2 58.036 224 93 1 43 266 29 251 2.39e-93 276
Msa0736500 AT5G56320.3 58.036 224 93 1 43 266 29 251 8.15e-93 276
Msa0736500 AT3G55500.1 51.311 267 114 2 1 266 7 258 6.05e-92 272
Msa0736500 AT5G05290.1 57.778 225 93 2 43 266 32 255 5.36e-91 270
Msa0736500 AT1G69530.2 50.376 266 115 2 1 266 1 249 2.11e-90 268
Msa0736500 AT1G69530.1 50.376 266 115 2 1 266 1 249 2.11e-90 268
Msa0736500 AT5G02260.1 54.667 225 101 1 43 266 32 256 2.97e-90 268
Msa0736500 AT2G37640.1 56.000 225 98 1 43 266 36 260 9.77e-90 267
Msa0736500 AT2G39700.1 56.000 225 98 1 43 266 31 255 1.72e-89 266
Msa0736500 AT1G69530.3 50.575 261 112 2 1 261 1 244 1.44e-88 264
Msa0736500 AT3G29030.1 54.867 226 94 1 43 268 38 255 1.49e-88 264
Msa0736500 AT2G03090.1 56.250 224 97 1 43 266 30 252 2.38e-88 263
Msa0736500 AT2G40610.1 52.444 225 105 2 43 266 30 253 6.83e-85 254
Msa0736500 AT1G26770.1 55.357 224 99 1 43 266 26 248 1.71e-84 253
Msa0736500 AT1G26770.2 55.357 224 99 1 43 266 36 258 3.07e-84 253
Msa0736500 AT2G37640.2 57.212 208 88 1 60 266 28 235 3.17e-84 252
Msa0736500 AT5G39270.1 51.261 238 113 2 27 264 42 276 2.52e-81 246
Msa0736500 AT2G28950.1 53.778 225 103 1 43 266 31 255 3.82e-81 245
Msa0736500 AT5G39290.1 51.931 233 106 3 32 264 50 276 1.30e-80 244
Msa0736500 AT5G39280.1 52.232 224 104 2 41 264 52 272 1.73e-79 241
Msa0736500 AT5G39300.1 52.679 224 103 2 41 264 53 273 2.44e-79 241
Msa0736500 AT4G38210.1 51.316 228 108 2 42 266 27 254 6.67e-79 239
Msa0736500 AT1G20190.1 49.091 220 110 1 45 262 28 247 1.10e-75 231
Msa0736500 AT1G69530.4 44.737 266 100 3 1 266 1 219 2.66e-73 224
Msa0736500 AT1G62980.1 48.444 225 115 1 41 264 29 253 2.31e-72 223
Msa0736500 AT1G69530.5 44.828 261 97 3 1 261 1 214 1.57e-71 220
Msa0736500 AT4G01630.1 49.107 224 109 3 43 262 28 250 2.70e-71 219
Msa0736500 AT5G39310.1 45.306 245 130 3 21 264 68 309 4.20e-69 216
Msa0736500 AT1G12560.1 46.606 221 116 2 43 262 37 256 3.63e-68 212
Msa0736500 AT5G39260.1 48.444 225 107 3 41 264 43 259 4.34e-66 207
Msa0736500 AT3G15370.1 47.414 232 107 6 43 266 27 251 2.11e-62 197
Msa0736500 AT1G20190.2 48.128 187 95 1 78 262 2 188 2.25e-62 195
Msa0736500 AT3G15370.2 47.907 215 97 6 60 266 74 281 1.03e-57 186
Msa0736500 AT2G20750.1 31.136 273 160 10 9 264 3 264 1.79e-24 99.4
Msa0736500 AT4G28250.1 29.537 281 152 11 1 264 6 257 3.93e-24 98.2
Msa0736500 AT4G28250.2 29.286 280 148 11 1 264 6 251 7.32e-22 92.0
Msa0736500 AT1G65680.1 28.512 242 145 9 36 262 40 268 4.03e-19 84.7
Msa0736500 AT2G20750.2 30.332 211 123 7 9 205 3 203 5.58e-15 72.4
Msa0736500 AT1G65681.1 26.941 219 130 8 59 262 14 217 1.05e-13 68.9
Msa0736500 AT4G17030.1 26.778 239 137 9 42 262 26 244 4.57e-13 67.8
Msa0736500 AT4G28250.4 28.899 218 109 9 1 205 6 190 7.24e-11 60.8
Msa0736500 AT3G60570.2 24.424 217 137 8 61 264 4 206 7.37e-11 60.8

Find 108 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTCTGTGCGCCGAATTA+TGG 0.120138 5_1:-52978622 Msa0736500:CDS
GGCTTTCAATGGGTCGGAAT+TGG 0.242564 5_1:-52977390 Msa0736500:CDS
GCTTTCAATGGGTCGGAATT+GGG 0.256772 5_1:-52977389 Msa0736500:CDS
GGAAGAACAAAGTGCTTATT+AGG 0.266775 5_1:+52978565 None:intergenic
TAACTTTCCATCTATTATCT+TGG 0.314402 5_1:-52977018 Msa0736500:three_prime_UTR
GCTCCGAAAGACTGGAGTTT+TGG 0.320656 5_1:-52977271 Msa0736500:CDS
ATTTCTGTGCGCCGAATTAT+GGG 0.321870 5_1:-52978621 Msa0736500:CDS
GTAAGTAGACCTATAATATT+GGG 0.325816 5_1:+52977143 None:intergenic
GGTAAGTAGACCTATAATAT+TGG 0.326700 5_1:+52977142 None:intergenic
ACGCGTTTATATGCCAGTTT+TGG 0.342695 5_1:+52977365 None:intergenic
CATTGTTGCGGTGAAGGTTA+AGG 0.343774 5_1:-52977428 Msa0736500:CDS
GATTTAAAGTGGTGTATTCC+TGG 0.357927 5_1:-52978670 Msa0736500:CDS
AACTTTCCATCTATTATCTT+GGG 0.368891 5_1:-52977017 Msa0736500:three_prime_UTR
GTCGGAATTGGGGCCAAAAC+TGG 0.376301 5_1:-52977378 Msa0736500:CDS
TGTCCAAAACTCCAGTCTTT+CGG 0.377244 5_1:+52977268 None:intergenic
TGCGCCGAATTATGGGTTTA+CGG 0.384118 5_1:-52978614 Msa0736500:CDS
AAGAACAGGTTGGCTTTCAA+TGG 0.397007 5_1:-52977401 Msa0736500:CDS
TAAACTCCCAAGATAATAGA+TGG 0.399688 5_1:+52977011 None:intergenic
GAATCAACCTCTTTCATTTG+AGG 0.401927 5_1:-52977335 Msa0736500:CDS
AACAGTTGCCATGCCGTAAC+CGG 0.402191 5_1:+52978762 None:intergenic
GTGGCGCGTGCTTTGAATTA+CGG 0.402202 5_1:-52978702 Msa0736500:CDS
AGAGACTGGTCCCTTGAAAC+AGG 0.404717 5_1:+52977196 None:intergenic
TATGAAAATATATACCTTGT+TGG 0.406110 5_1:-52976985 Msa0736500:three_prime_UTR
GCAATGGGTGGGTGGGACAC+TGG 0.410370 5_1:+52979131 None:intergenic
AATTATGGGTTTACGGTTGA+AGG 0.412698 5_1:-52978607 Msa0736500:CDS
ATTGTTGCGGTGAAGGTTAA+GGG 0.417256 5_1:-52977427 Msa0736500:CDS
AGAGTAGTTGATAATTGATT+TGG 0.424966 5_1:-52977070 Msa0736500:three_prime_UTR
CGATTTACAGTCACCGGATC+TGG 0.430139 5_1:-52977496 Msa0736500:CDS
GACTTATCAAAAGCCGGTTA+CGG 0.433896 5_1:-52978775 Msa0736500:CDS
GAGAAAATGAAGAAAGAAAG+TGG 0.437740 5_1:+52979064 None:intergenic
AATATTATAGGTCTACTTAC+CGG 0.448816 5_1:-52977140 Msa0736500:three_prime_UTR
ATCAAATTGCTTGCCTTCAA+AGG 0.451831 5_1:+52977243 None:intergenic
ACTGTGTCACGTGGATCTAC+CGG 0.453305 5_1:+52978820 None:intergenic
GTCGGCGGCGCGTGTGGCTA+CGG 0.454653 5_1:-52978799 Msa0736500:CDS
ACAATGTTGCTCCGAAAGAC+TGG 0.455797 5_1:-52977279 Msa0736500:CDS
GTGCTGATCAGCAATGTTGC+TGG 0.456538 5_1:-52977460 Msa0736500:CDS
CAGATCCGGTGACTGTAAAT+CGG 0.457752 5_1:+52977497 None:intergenic
AACGAAGAAAACCTGTTTCA+AGG 0.458176 5_1:-52977207 Msa0736500:three_prime_UTR
GTAGTTGATAATTGATTTGG+TGG 0.461348 5_1:-52977067 Msa0736500:three_prime_UTR
GTAACAATAATCGAAGTTCC+AGG 0.466240 5_1:+52978652 None:intergenic
AAGATCGCTATTTGGAAAGC+TGG 0.469148 5_1:-52978526 Msa0736500:CDS
GGGTTTACGGTTGAAGGTGG+TGG 0.469331 5_1:-52978601 Msa0736500:CDS
CTTTCAATGGGTCGGAATTG+GGG 0.469604 5_1:-52977388 Msa0736500:CDS
AAGGTTAAGGGCTCAAGAAC+AGG 0.472972 5_1:-52977415 Msa0736500:CDS
ATCAGCAATGTTGCTGGCCA+TGG 0.474378 5_1:-52977454 Msa0736500:CDS
TGTTGTTGCAATGGGTGGGT+GGG 0.481326 5_1:+52979124 None:intergenic
GGCGCGTGCGGATCGCCATT+CGG 0.481496 5_1:+52978855 None:intergenic
CTTCCCCTTCTTTCACCGAA+TGG 0.483052 5_1:-52978870 Msa0736500:CDS
ATCTTCTCAAAAGCATCAAT+AGG 0.486912 5_1:+52978544 None:intergenic
TTGTTGTTGCAATGGGTGGG+TGG 0.487519 5_1:+52979123 None:intergenic
AGAACAGGTTGGCTTTCAAT+GGG 0.491999 5_1:-52977400 Msa0736500:CDS
TGGAGACATTGTTGCGGTGA+AGG 0.493493 5_1:-52977434 Msa0736500:CDS
TGGATCTACCGGGGCGTAGT+AGG 0.498940 5_1:+52978831 None:intergenic
TTTGAGGTTACGAGTAGTGA+TGG 0.501425 5_1:-52977319 Msa0736500:CDS
CTCGTAACCTCAAATGAAAG+AGG 0.502745 5_1:+52977328 None:intergenic
GATCGCCATTCGGTGAAAGA+AGG 0.504459 5_1:+52978865 None:intergenic
TCAACCGTAAACCCATAATT+CGG 0.504889 5_1:+52978610 None:intergenic
AGAAGAGTAGTGAGATGTAA+CGG 0.505253 5_1:+52978924 None:intergenic
GGGGAAGATTGTTGAGAAGG+TGG 0.507413 5_1:+52978886 None:intergenic
AGAAGGTGGTGGTTGAGAAG+AGG 0.512505 5_1:+52978900 None:intergenic
GAAGGGGAAGATTGTTGAGA+AGG 0.515350 5_1:+52978883 None:intergenic
CTGTGTCACGTGGATCTACC+GGG 0.516254 5_1:+52978821 None:intergenic
ACGAAGAAAACCTGTTTCAA+GGG 0.518898 5_1:-52977206 Msa0736500:three_prime_UTR
AGGATAAAGTGCAGAAGGGA+AGG 0.530862 5_1:-52977526 Msa0736500:CDS
TATGGGTTTACGGTTGAAGG+TGG 0.532788 5_1:-52978604 Msa0736500:CDS
ATCGCCATTCGGTGAAAGAA+GGG 0.538930 5_1:+52978866 None:intergenic
GACACAGTCGGCGGCGCGTG+TGG 0.550703 5_1:-52978805 Msa0736500:CDS
CAGGTTGGCTTTCAATGGGT+CGG 0.553172 5_1:-52977396 Msa0736500:CDS
TACGGAGACTTATCAAAAGC+CGG 0.565953 5_1:-52978781 Msa0736500:CDS
AAAGTGGTAGTGAAAGTGAC+GGG 0.570165 5_1:+52979080 None:intergenic
GGAGCAGGATAAAGTGCAGA+AGG 0.570200 5_1:-52977531 Msa0736500:intron
GGAGTCCGATTTACAGTCAC+CGG 0.573922 5_1:-52977502 Msa0736500:CDS
ATAAAGTGCAGAAGGGAAGG+TGG 0.575254 5_1:-52977523 Msa0736500:CDS
TGAAATGAAGATACCAGATC+CGG 0.576855 5_1:+52977483 None:intergenic
AGAACAAAGTGCTTATTAGG+AGG 0.582144 5_1:+52978568 None:intergenic
TTGTTGGTCAACAACAAAAG+AGG 0.583248 5_1:-52976969 Msa0736500:three_prime_UTR
TTGAGGTTACGAGTAGTGAT+GGG 0.583484 5_1:-52977318 Msa0736500:CDS
TTTGAACGAGGTCAGATCTG+TGG 0.583854 5_1:-52978721 Msa0736500:CDS
AATTAACATGTAAATGCTTG+AGG 0.586547 5_1:-52976946 Msa0736500:three_prime_UTR
ATCAAAAGCCGGTTACGGCA+TGG 0.595697 5_1:-52978770 Msa0736500:CDS
AATGGGAAAGGGAAAGAGAC+TGG 0.597600 5_1:+52977182 None:intergenic
ACATGCCTCTTCAGTATCGT+AGG 0.598128 5_1:-52978501 Msa0736500:intron
GTAACATTTCCTCAGTGTGA+AGG 0.604886 5_1:+52978992 None:intergenic
ATCTACCGGGGCGTAGTAGG+TGG 0.607583 5_1:+52978834 None:intergenic
GGTTACGGCATGGCAACTGT+TGG 0.609475 5_1:-52978760 Msa0736500:CDS
GAAGATTGTTGAGAAGGTGG+TGG 0.611367 5_1:+52978889 None:intergenic
GGCGTAGTAGGTGGCGCGTG+CGG 0.613506 5_1:+52978843 None:intergenic
TCACCGCAACAATGTCTCCA+TGG 0.621449 5_1:+52977437 None:intergenic
TTGTAAGATTGCCAATGTGA+TGG 0.622247 5_1:-52977043 Msa0736500:three_prime_UTR
TTAAGGGCTCAAGAACAGGT+TGG 0.623161 5_1:-52977411 Msa0736500:CDS
TATTACCTACGATACTGAAG+AGG 0.624697 5_1:+52978496 None:intergenic
GCGCCGCCGACTGTGTCACG+TGG 0.625743 5_1:+52978811 None:intergenic
GGTGTGTGGATGATTTAAAG+TGG 0.628924 5_1:-52978681 Msa0736500:CDS
TCGCCATTCGGTGAAAGAAG+GGG 0.643549 5_1:+52978867 None:intergenic
GAAAGTGGTAGTGAAAGTGA+CGG 0.643908 5_1:+52979079 None:intergenic
AAAATGTAAGATAACACCAC+CGG 0.645862 5_1:+52977121 None:intergenic
GAGCAGGATAAAGTGCAGAA+GGG 0.649937 5_1:-52977530 Msa0736500:intron
GTGCTTTGAATTACGGTGTG+TGG 0.652130 5_1:-52978695 Msa0736500:CDS
GGAAAGTTACACCATCACAT+TGG 0.657775 5_1:+52977032 None:intergenic
AGTGAAGCTTTGTTTGAACG+AGG 0.664292 5_1:-52978733 Msa0736500:CDS
TAGTGATGGGAAAACAGTCA+CGG 0.670779 5_1:-52977305 Msa0736500:CDS
ACGCGCCACCTACTACGCCC+CGG 0.682530 5_1:-52978839 Msa0736500:CDS
GTAGATCCACGTGACACAGT+CGG 0.684257 5_1:-52978817 Msa0736500:CDS
TAAGTAGACCTATAATATTG+GGG 0.687551 5_1:+52977144 None:intergenic
TGGCCATGGAGACATTGTTG+CGG 0.694232 5_1:-52977440 Msa0736500:CDS
ATTATAGGTCTACTTACCGG+TGG 0.694910 5_1:-52977137 Msa0736500:three_prime_UTR
TGTGTCACGTGGATCTACCG+GGG 0.729868 5_1:+52978822 None:intergenic
GATCCACGTGACACAGTCGG+CGG 0.742025 5_1:-52978814 Msa0736500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTTACATTTTTATTATTT+TGG - chr5_1:52978957-52978976 Msa0736500:CDS 10.0%
!!! ATCTTACATTTTTATTATTT+TGG - chr5_1:52978957-52978976 Msa0736500:CDS 10.0%
!!! TACTTAAAAAAACTTGATTT+TGG - chr5_1:52978479-52978498 Msa0736500:intron 15.0%
!! GGTAAAAAAAAAAATGAAAT+GGG + chr5_1:52978905-52978924 None:intergenic 15.0%
!!! TACTTAAAAAAACTTGATTT+TGG - chr5_1:52978479-52978498 Msa0736500:intron 15.0%
!! GGTAAAAAAAAAAATGAAAT+GGG + chr5_1:52978905-52978924 None:intergenic 15.0%
!!! TTATTTTTTGTTGTTGCAAT+GGG + chr5_1:52976954-52976973 None:intergenic 20.0%
!!! TTTATTTTTTGTTGTTGCAA+TGG + chr5_1:52976955-52976974 None:intergenic 20.0%
!! TTTAATAGTATACTTGAGTT+TGG - chr5_1:52977700-52977719 Msa0736500:intron 20.0%
!!! TTTTCAAGAATATATTCCAT+GGG + chr5_1:52977756-52977775 None:intergenic 20.0%
!!! TTTTTCAAGAATATATTCCA+TGG + chr5_1:52977757-52977776 None:intergenic 20.0%
!!! TTGTTAATGGTTAATTTGTT+AGG - chr5_1:52977864-52977883 Msa0736500:intron 20.0%
!!! TGTTAATGGTTAATTTGTTA+GGG - chr5_1:52977865-52977884 Msa0736500:intron 20.0%
!! AATAAAAGCTTAATTATGAG+TGG - chr5_1:52978025-52978044 Msa0736500:intron 20.0%
!! TACTAATTGAATTCTATGTA+TGG + chr5_1:52978101-52978120 None:intergenic 20.0%
!! ATTAACATTGTATGAAGATA+CGG + chr5_1:52978128-52978147 None:intergenic 20.0%
!!! TTATTAGACCATTAATTTTG+CGG + chr5_1:52978301-52978320 None:intergenic 20.0%
!! AAAAAAAATGAAATGGGAAA+GGG + chr5_1:52978899-52978918 None:intergenic 20.0%
!! AAAAAAAAATGAAATGGGAA+AGG + chr5_1:52978900-52978919 None:intergenic 20.0%
!! GGGTAAAAAAAAAAATGAAA+TGG + chr5_1:52978906-52978925 None:intergenic 20.0%
!!! TTTTTTTACCCCAATATTAT+AGG - chr5_1:52978915-52978934 Msa0736500:CDS 20.0%
!! TATGAAAATATATACCTTGT+TGG - chr5_1:52979082-52979101 Msa0736500:five_prime_UTR 20.0%
!!! TTATTTTTTGTTGTTGCAAT+GGG + chr5_1:52976954-52976973 None:intergenic 20.0%
!!! TTTATTTTTTGTTGTTGCAA+TGG + chr5_1:52976955-52976974 None:intergenic 20.0%
!! TTTAATAGTATACTTGAGTT+TGG - chr5_1:52977700-52977719 Msa0736500:intron 20.0%
!!! TTTTCAAGAATATATTCCAT+GGG + chr5_1:52977756-52977775 None:intergenic 20.0%
!!! TTTTTCAAGAATATATTCCA+TGG + chr5_1:52977757-52977776 None:intergenic 20.0%
!!! TTGTTAATGGTTAATTTGTT+AGG - chr5_1:52977864-52977883 Msa0736500:intron 20.0%
!!! TGTTAATGGTTAATTTGTTA+GGG - chr5_1:52977865-52977884 Msa0736500:intron 20.0%
!! AATAAAAGCTTAATTATGAG+TGG - chr5_1:52978025-52978044 Msa0736500:intron 20.0%
!! TACTAATTGAATTCTATGTA+TGG + chr5_1:52978101-52978120 None:intergenic 20.0%
!! ATTAACATTGTATGAAGATA+CGG + chr5_1:52978128-52978147 None:intergenic 20.0%
!!! TTATTAGACCATTAATTTTG+CGG + chr5_1:52978301-52978320 None:intergenic 20.0%
!! AAAAAAAATGAAATGGGAAA+GGG + chr5_1:52978899-52978918 None:intergenic 20.0%
!! AAAAAAAAATGAAATGGGAA+AGG + chr5_1:52978900-52978919 None:intergenic 20.0%
!! GGGTAAAAAAAAAAATGAAA+TGG + chr5_1:52978906-52978925 None:intergenic 20.0%
!!! TTTTTTTACCCCAATATTAT+AGG - chr5_1:52978915-52978934 Msa0736500:CDS 20.0%
!! TATGAAAATATATACCTTGT+TGG - chr5_1:52979082-52979101 Msa0736500:five_prime_UTR 20.0%
!!! GGTTATTTTTATTTTTCCCA+TGG - chr5_1:52977737-52977756 Msa0736500:intron 25.0%
! AGTGAGAAACAAATTGTTAA+TGG - chr5_1:52977851-52977870 Msa0736500:intron 25.0%
! TCTATGTATGGAAAAATGTT+GGG + chr5_1:52978089-52978108 None:intergenic 25.0%
! TTCTATGTATGGAAAAATGT+TGG + chr5_1:52978090-52978109 None:intergenic 25.0%
! GTATCTTCATACAATGTTAA+TGG - chr5_1:52978127-52978146 Msa0736500:intron 25.0%
! TAAGTAGACCTATAATATTG+GGG + chr5_1:52978926-52978945 None:intergenic 25.0%
! GTAAGTAGACCTATAATATT+GGG + chr5_1:52978927-52978946 None:intergenic 25.0%
! AATATTATAGGTCTACTTAC+CGG - chr5_1:52978927-52978946 Msa0736500:CDS 25.0%
!!! AGAGTAGTTGATAATTGATT+TGG - chr5_1:52978997-52979016 Msa0736500:exon 25.0%
! TAACTTTCCATCTATTATCT+TGG - chr5_1:52979049-52979068 Msa0736500:five_prime_UTR 25.0%
! AACTTTCCATCTATTATCTT+GGG - chr5_1:52979050-52979069 Msa0736500:five_prime_UTR 25.0%
! AATTAACATGTAAATGCTTG+AGG - chr5_1:52979121-52979140 Msa0736500:five_prime_UTR 25.0%
!!! GGTTATTTTTATTTTTCCCA+TGG - chr5_1:52977737-52977756 Msa0736500:intron 25.0%
! AGTGAGAAACAAATTGTTAA+TGG - chr5_1:52977851-52977870 Msa0736500:intron 25.0%
! TCTATGTATGGAAAAATGTT+GGG + chr5_1:52978089-52978108 None:intergenic 25.0%
! TTCTATGTATGGAAAAATGT+TGG + chr5_1:52978090-52978109 None:intergenic 25.0%
! GTATCTTCATACAATGTTAA+TGG - chr5_1:52978127-52978146 Msa0736500:intron 25.0%
! TAAGTAGACCTATAATATTG+GGG + chr5_1:52978926-52978945 None:intergenic 25.0%
! GTAAGTAGACCTATAATATT+GGG + chr5_1:52978927-52978946 None:intergenic 25.0%
! AATATTATAGGTCTACTTAC+CGG - chr5_1:52978927-52978946 Msa0736500:CDS 25.0%
!!! AGAGTAGTTGATAATTGATT+TGG - chr5_1:52978997-52979016 Msa0736500:exon 25.0%
! TAACTTTCCATCTATTATCT+TGG - chr5_1:52979049-52979068 Msa0736500:five_prime_UTR 25.0%
! AACTTTCCATCTATTATCTT+GGG - chr5_1:52979050-52979069 Msa0736500:five_prime_UTR 25.0%
! AATTAACATGTAAATGCTTG+AGG - chr5_1:52979121-52979140 Msa0736500:five_prime_UTR 25.0%
GAGAAAATGAAGAAAGAAAG+TGG + chr5_1:52977006-52977025 None:intergenic 30.0%
GAAGAAGAAGAAAAAAGTGA+GGG + chr5_1:52977050-52977069 None:intergenic 30.0%
TGAAGAAGAAGAAAAAAGTG+AGG + chr5_1:52977051-52977070 None:intergenic 30.0%
!! ATCTTCTCAAAAGCATCAAT+AGG + chr5_1:52977526-52977545 None:intergenic 30.0%
AATTCCTGTAGATAATGAGA+AGG - chr5_1:52978166-52978185 Msa0736500:intron 30.0%
ATTCCTGTAGATAATGAGAA+GGG - chr5_1:52978167-52978186 Msa0736500:intron 30.0%
! ATTTTGCTAGCAAGTACATT+AGG - chr5_1:52978207-52978226 Msa0736500:intron 30.0%
! TTTTGCTAGCAAGTACATTA+GGG - chr5_1:52978208-52978227 Msa0736500:intron 30.0%
AGAAAAGACCGCAAAATTAA+TGG - chr5_1:52978290-52978309 Msa0736500:intron 30.0%
TATGCTACATCATTTACTGT+TGG - chr5_1:52978426-52978445 Msa0736500:intron 30.0%
TTTGAATGTTGTGTTCTGTT+TGG - chr5_1:52978515-52978534 Msa0736500:CDS 30.0%
GGTAAGTAGACCTATAATAT+TGG + chr5_1:52978928-52978947 None:intergenic 30.0%
AAAATGTAAGATAACACCAC+CGG + chr5_1:52978949-52978968 None:intergenic 30.0%
!! GTAGTTGATAATTGATTTGG+TGG - chr5_1:52979000-52979019 Msa0736500:five_prime_UTR 30.0%
TAAACTCCCAAGATAATAGA+TGG + chr5_1:52979059-52979078 None:intergenic 30.0%
GAGAAAATGAAGAAAGAAAG+TGG + chr5_1:52977006-52977025 None:intergenic 30.0%
GAAGAAGAAGAAAAAAGTGA+GGG + chr5_1:52977050-52977069 None:intergenic 30.0%
TGAAGAAGAAGAAAAAAGTG+AGG + chr5_1:52977051-52977070 None:intergenic 30.0%
!! ATCTTCTCAAAAGCATCAAT+AGG + chr5_1:52977526-52977545 None:intergenic 30.0%
AATTCCTGTAGATAATGAGA+AGG - chr5_1:52978166-52978185 Msa0736500:intron 30.0%
ATTCCTGTAGATAATGAGAA+GGG - chr5_1:52978167-52978186 Msa0736500:intron 30.0%
! ATTTTGCTAGCAAGTACATT+AGG - chr5_1:52978207-52978226 Msa0736500:intron 30.0%
! TTTTGCTAGCAAGTACATTA+GGG - chr5_1:52978208-52978227 Msa0736500:intron 30.0%
AGAAAAGACCGCAAAATTAA+TGG - chr5_1:52978290-52978309 Msa0736500:intron 30.0%
TATGCTACATCATTTACTGT+TGG - chr5_1:52978426-52978445 Msa0736500:intron 30.0%
TTTGAATGTTGTGTTCTGTT+TGG - chr5_1:52978515-52978534 Msa0736500:CDS 30.0%
GGTAAGTAGACCTATAATAT+TGG + chr5_1:52978928-52978947 None:intergenic 30.0%
AAAATGTAAGATAACACCAC+CGG + chr5_1:52978949-52978968 None:intergenic 30.0%
!! GTAGTTGATAATTGATTTGG+TGG - chr5_1:52979000-52979019 Msa0736500:five_prime_UTR 30.0%
TAAACTCCCAAGATAATAGA+TGG + chr5_1:52979059-52979078 None:intergenic 30.0%
!!! TTTTTGTTGTTGCAATGGGT+GGG + chr5_1:52976950-52976969 None:intergenic 35.0%
!!! TTTTTTGTTGTTGCAATGGG+TGG + chr5_1:52976951-52976970 None:intergenic 35.0%
AGAAGAGTAGTGAGATGTAA+CGG + chr5_1:52977146-52977165 None:intergenic 35.0%
! GATTTAAAGTGGTGTATTCC+TGG - chr5_1:52977397-52977416 Msa0736500:CDS 35.0%
GTAACAATAATCGAAGTTCC+AGG + chr5_1:52977418-52977437 None:intergenic 35.0%
TCAACCGTAAACCCATAATT+CGG + chr5_1:52977460-52977479 None:intergenic 35.0%
AATTATGGGTTTACGGTTGA+AGG - chr5_1:52977460-52977479 Msa0736500:CDS 35.0%
! AGAACAAAGTGCTTATTAGG+AGG + chr5_1:52977502-52977521 None:intergenic 35.0%
! GGAAGAACAAAGTGCTTATT+AGG + chr5_1:52977505-52977524 None:intergenic 35.0%
!! CTTTTGAGAAGATCGCTATT+TGG - chr5_1:52977533-52977552 Msa0736500:intron 35.0%
TATTACCTACGATACTGAAG+AGG + chr5_1:52977574-52977593 None:intergenic 35.0%
!! AGTTTGGCTTGTTTATGAGT+TGG - chr5_1:52977716-52977735 Msa0736500:intron 35.0%
!! GTTAATTTGTTAGGGAGAGA+GGG - chr5_1:52977873-52977892 Msa0736500:intron 35.0%
CTTCATGCATAATGCTCATT+TGG - chr5_1:52977916-52977935 Msa0736500:intron 35.0%
AAGAGAAAGGTTTGAATCCT+TGG + chr5_1:52977972-52977991 None:intergenic 35.0%
AGGATTCAAACCTTTCTCTT+TGG - chr5_1:52977972-52977991 Msa0736500:intron 35.0%
GCATAAAGTTCCAAAGAGAA+AGG + chr5_1:52977985-52978004 None:intergenic 35.0%
CTTAATTATGAGTGGCAAAC+TGG - chr5_1:52978033-52978052 Msa0736500:intron 35.0%
CTATTAACCCACGGTTTAAA+TGG + chr5_1:52978342-52978361 None:intergenic 35.0%
ATAGCTGATAAAGGAACTTG+TGG - chr5_1:52978368-52978387 Msa0736500:intron 35.0%
TGAAATGAAGATACCAGATC+CGG + chr5_1:52978587-52978606 None:intergenic 35.0%
GAATCAACCTCTTTCATTTG+AGG - chr5_1:52978732-52978751 Msa0736500:CDS 35.0%
!!! AGTTTTGGACAAACCTTTGA+AGG - chr5_1:52978811-52978830 Msa0736500:CDS 35.0%
ATCAAATTGCTTGCCTTCAA+AGG + chr5_1:52978827-52978846 None:intergenic 35.0%
! TGAAACAGGTTTTCTTCGTT+TGG + chr5_1:52978860-52978879 None:intergenic 35.0%
AACGAAGAAAACCTGTTTCA+AGG - chr5_1:52978860-52978879 Msa0736500:CDS 35.0%
ACGAAGAAAACCTGTTTCAA+GGG - chr5_1:52978861-52978880 Msa0736500:CDS 35.0%
TTGTAAGATTGCCAATGTGA+TGG - chr5_1:52979024-52979043 Msa0736500:five_prime_UTR 35.0%
!!! TCTTTTGTTGTTGACCAACA+AGG + chr5_1:52979099-52979118 None:intergenic 35.0%
TTGTTGGTCAACAACAAAAG+AGG - chr5_1:52979098-52979117 Msa0736500:five_prime_UTR 35.0%
!!! TTTTTGTTGTTGCAATGGGT+GGG + chr5_1:52976950-52976969 None:intergenic 35.0%
!!! TTTTTTGTTGTTGCAATGGG+TGG + chr5_1:52976951-52976970 None:intergenic 35.0%
AGAAGAGTAGTGAGATGTAA+CGG + chr5_1:52977146-52977165 None:intergenic 35.0%
! GATTTAAAGTGGTGTATTCC+TGG - chr5_1:52977397-52977416 Msa0736500:CDS 35.0%
GTAACAATAATCGAAGTTCC+AGG + chr5_1:52977418-52977437 None:intergenic 35.0%
TCAACCGTAAACCCATAATT+CGG + chr5_1:52977460-52977479 None:intergenic 35.0%
AATTATGGGTTTACGGTTGA+AGG - chr5_1:52977460-52977479 Msa0736500:CDS 35.0%
! AGAACAAAGTGCTTATTAGG+AGG + chr5_1:52977502-52977521 None:intergenic 35.0%
! GGAAGAACAAAGTGCTTATT+AGG + chr5_1:52977505-52977524 None:intergenic 35.0%
!! CTTTTGAGAAGATCGCTATT+TGG - chr5_1:52977533-52977552 Msa0736500:intron 35.0%
TATTACCTACGATACTGAAG+AGG + chr5_1:52977574-52977593 None:intergenic 35.0%
!! AGTTTGGCTTGTTTATGAGT+TGG - chr5_1:52977716-52977735 Msa0736500:intron 35.0%
!! GTTAATTTGTTAGGGAGAGA+GGG - chr5_1:52977873-52977892 Msa0736500:intron 35.0%
CTTCATGCATAATGCTCATT+TGG - chr5_1:52977916-52977935 Msa0736500:intron 35.0%
AAGAGAAAGGTTTGAATCCT+TGG + chr5_1:52977972-52977991 None:intergenic 35.0%
AGGATTCAAACCTTTCTCTT+TGG - chr5_1:52977972-52977991 Msa0736500:intron 35.0%
GCATAAAGTTCCAAAGAGAA+AGG + chr5_1:52977985-52978004 None:intergenic 35.0%
CTTAATTATGAGTGGCAAAC+TGG - chr5_1:52978033-52978052 Msa0736500:intron 35.0%
CTATTAACCCACGGTTTAAA+TGG + chr5_1:52978342-52978361 None:intergenic 35.0%
ATAGCTGATAAAGGAACTTG+TGG - chr5_1:52978368-52978387 Msa0736500:intron 35.0%
TGAAATGAAGATACCAGATC+CGG + chr5_1:52978587-52978606 None:intergenic 35.0%
GAATCAACCTCTTTCATTTG+AGG - chr5_1:52978732-52978751 Msa0736500:CDS 35.0%
!!! AGTTTTGGACAAACCTTTGA+AGG - chr5_1:52978811-52978830 Msa0736500:CDS 35.0%
ATCAAATTGCTTGCCTTCAA+AGG + chr5_1:52978827-52978846 None:intergenic 35.0%
! TGAAACAGGTTTTCTTCGTT+TGG + chr5_1:52978860-52978879 None:intergenic 35.0%
AACGAAGAAAACCTGTTTCA+AGG - chr5_1:52978860-52978879 Msa0736500:CDS 35.0%
ACGAAGAAAACCTGTTTCAA+GGG - chr5_1:52978861-52978880 Msa0736500:CDS 35.0%
TTGTAAGATTGCCAATGTGA+TGG - chr5_1:52979024-52979043 Msa0736500:five_prime_UTR 35.0%
!!! TCTTTTGTTGTTGACCAACA+AGG + chr5_1:52979099-52979118 None:intergenic 35.0%
TTGTTGGTCAACAACAAAAG+AGG - chr5_1:52979098-52979117 Msa0736500:five_prime_UTR 35.0%
! AAAGTGGTAGTGAAAGTGAC+GGG + chr5_1:52976990-52977009 None:intergenic 40.0%
! GAAAGTGGTAGTGAAAGTGA+CGG + chr5_1:52976991-52977010 None:intergenic 40.0%
! CTTCATTTTCCTTCACACTG+AGG - chr5_1:52977066-52977085 Msa0736500:three_prime_UTR 40.0%
GTAACATTTCCTCAGTGTGA+AGG + chr5_1:52977078-52977097 None:intergenic 40.0%
TACGGAGACTTATCAAAAGC+CGG - chr5_1:52977286-52977305 Msa0736500:CDS 40.0%
GACTTATCAAAAGCCGGTTA+CGG - chr5_1:52977292-52977311 Msa0736500:CDS 40.0%
!! AGTGAAGCTTTGTTTGAACG+AGG - chr5_1:52977334-52977353 Msa0736500:CDS 40.0%
GGTGTGTGGATGATTTAAAG+TGG - chr5_1:52977386-52977405 Msa0736500:CDS 40.0%
AATTTCTGTGCGCCGAATTA+TGG - chr5_1:52977445-52977464 Msa0736500:CDS 40.0%
ATTTCTGTGCGCCGAATTAT+GGG - chr5_1:52977446-52977465 Msa0736500:CDS 40.0%
AAGATCGCTATTTGGAAAGC+TGG - chr5_1:52977541-52977560 Msa0736500:intron 40.0%
! GCTCTAAACGAAAGAGTAGT+TGG + chr5_1:52977605-52977624 None:intergenic 40.0%
!! GGTTAATTTGTTAGGGAGAG+AGG - chr5_1:52977872-52977891 Msa0736500:intron 40.0%
AGAAAGGTTTGAATCCTTGG+AGG + chr5_1:52977969-52977988 None:intergenic 40.0%
ACATTGTATGAAGATACGGC+TGG + chr5_1:52978124-52978143 None:intergenic 40.0%
GTTCCCTTCTCATTATCTAC+AGG + chr5_1:52978173-52978192 None:intergenic 40.0%
! TTTCGTACACGGTTTGAAAC+GGG + chr5_1:52978259-52978278 None:intergenic 40.0%
GTTTCGTACACGGTTTGAAA+CGG + chr5_1:52978260-52978279 None:intergenic 40.0%
TTTCAAACCGTGTACGAAAC+AGG - chr5_1:52978260-52978279 Msa0736500:intron 40.0%
TATGCTTGGCTATTAACCCA+CGG + chr5_1:52978351-52978370 None:intergenic 40.0%
TAGCCAAGCATAGCTGATAA+AGG - chr5_1:52978359-52978378 Msa0736500:intron 40.0%
GTTCCTTTATCAGCTATGCT+TGG + chr5_1:52978365-52978384 None:intergenic 40.0%
TAGCATAATGAGAGCTGTTG+GGG + chr5_1:52978413-52978432 None:intergenic 40.0%
GTAGCATAATGAGAGCTGTT+GGG + chr5_1:52978414-52978433 None:intergenic 40.0%
TGTAGCATAATGAGAGCTGT+TGG + chr5_1:52978415-52978434 None:intergenic 40.0%
ATTGTTGCGGTGAAGGTTAA+GGG - chr5_1:52978640-52978659 Msa0736500:CDS 40.0%
!! AAGAACAGGTTGGCTTTCAA+TGG - chr5_1:52978666-52978685 Msa0736500:CDS 40.0%
!! AGAACAGGTTGGCTTTCAAT+GGG - chr5_1:52978667-52978686 Msa0736500:CDS 40.0%
! ACGCGTTTATATGCCAGTTT+TGG + chr5_1:52978705-52978724 None:intergenic 40.0%
CTCGTAACCTCAAATGAAAG+AGG + chr5_1:52978742-52978761 None:intergenic 40.0%
! TTTGAGGTTACGAGTAGTGA+TGG - chr5_1:52978748-52978767 Msa0736500:CDS 40.0%
TTGAGGTTACGAGTAGTGAT+GGG - chr5_1:52978749-52978768 Msa0736500:CDS 40.0%
! TAGTGATGGGAAAACAGTCA+CGG - chr5_1:52978762-52978781 Msa0736500:CDS 40.0%
TGTCCAAAACTCCAGTCTTT+CGG + chr5_1:52978802-52978821 None:intergenic 40.0%
ATTATAGGTCTACTTACCGG+TGG - chr5_1:52978930-52978949 Msa0736500:CDS 40.0%
GGAAAGTTACACCATCACAT+TGG + chr5_1:52979038-52979057 None:intergenic 40.0%
! AAAGTGGTAGTGAAAGTGAC+GGG + chr5_1:52976990-52977009 None:intergenic 40.0%
! GAAAGTGGTAGTGAAAGTGA+CGG + chr5_1:52976991-52977010 None:intergenic 40.0%
! CTTCATTTTCCTTCACACTG+AGG - chr5_1:52977066-52977085 Msa0736500:three_prime_UTR 40.0%
GTAACATTTCCTCAGTGTGA+AGG + chr5_1:52977078-52977097 None:intergenic 40.0%
TACGGAGACTTATCAAAAGC+CGG - chr5_1:52977286-52977305 Msa0736500:CDS 40.0%
GACTTATCAAAAGCCGGTTA+CGG - chr5_1:52977292-52977311 Msa0736500:CDS 40.0%
!! AGTGAAGCTTTGTTTGAACG+AGG - chr5_1:52977334-52977353 Msa0736500:CDS 40.0%
GGTGTGTGGATGATTTAAAG+TGG - chr5_1:52977386-52977405 Msa0736500:CDS 40.0%
AATTTCTGTGCGCCGAATTA+TGG - chr5_1:52977445-52977464 Msa0736500:CDS 40.0%
ATTTCTGTGCGCCGAATTAT+GGG - chr5_1:52977446-52977465 Msa0736500:CDS 40.0%
AAGATCGCTATTTGGAAAGC+TGG - chr5_1:52977541-52977560 Msa0736500:intron 40.0%
! GCTCTAAACGAAAGAGTAGT+TGG + chr5_1:52977605-52977624 None:intergenic 40.0%
!! GGTTAATTTGTTAGGGAGAG+AGG - chr5_1:52977872-52977891 Msa0736500:intron 40.0%
AGAAAGGTTTGAATCCTTGG+AGG + chr5_1:52977969-52977988 None:intergenic 40.0%
ACATTGTATGAAGATACGGC+TGG + chr5_1:52978124-52978143 None:intergenic 40.0%
GTTCCCTTCTCATTATCTAC+AGG + chr5_1:52978173-52978192 None:intergenic 40.0%
! TTTCGTACACGGTTTGAAAC+GGG + chr5_1:52978259-52978278 None:intergenic 40.0%
GTTTCGTACACGGTTTGAAA+CGG + chr5_1:52978260-52978279 None:intergenic 40.0%
TTTCAAACCGTGTACGAAAC+AGG - chr5_1:52978260-52978279 Msa0736500:intron 40.0%
TATGCTTGGCTATTAACCCA+CGG + chr5_1:52978351-52978370 None:intergenic 40.0%
TAGCCAAGCATAGCTGATAA+AGG - chr5_1:52978359-52978378 Msa0736500:intron 40.0%
GTTCCTTTATCAGCTATGCT+TGG + chr5_1:52978365-52978384 None:intergenic 40.0%
TAGCATAATGAGAGCTGTTG+GGG + chr5_1:52978413-52978432 None:intergenic 40.0%
GTAGCATAATGAGAGCTGTT+GGG + chr5_1:52978414-52978433 None:intergenic 40.0%
TGTAGCATAATGAGAGCTGT+TGG + chr5_1:52978415-52978434 None:intergenic 40.0%
ATTGTTGCGGTGAAGGTTAA+GGG - chr5_1:52978640-52978659 Msa0736500:CDS 40.0%
!! AAGAACAGGTTGGCTTTCAA+TGG - chr5_1:52978666-52978685 Msa0736500:CDS 40.0%
!! AGAACAGGTTGGCTTTCAAT+GGG - chr5_1:52978667-52978686 Msa0736500:CDS 40.0%
! ACGCGTTTATATGCCAGTTT+TGG + chr5_1:52978705-52978724 None:intergenic 40.0%
CTCGTAACCTCAAATGAAAG+AGG + chr5_1:52978742-52978761 None:intergenic 40.0%
! TTTGAGGTTACGAGTAGTGA+TGG - chr5_1:52978748-52978767 Msa0736500:CDS 40.0%
TTGAGGTTACGAGTAGTGAT+GGG - chr5_1:52978749-52978768 Msa0736500:CDS 40.0%
! TAGTGATGGGAAAACAGTCA+CGG - chr5_1:52978762-52978781 Msa0736500:CDS 40.0%
TGTCCAAAACTCCAGTCTTT+CGG + chr5_1:52978802-52978821 None:intergenic 40.0%
ATTATAGGTCTACTTACCGG+TGG - chr5_1:52978930-52978949 Msa0736500:CDS 40.0%
GGAAAGTTACACCATCACAT+TGG + chr5_1:52979038-52979057 None:intergenic 40.0%
GAAGATTGTTGAGAAGGTGG+TGG + chr5_1:52977181-52977200 None:intergenic 45.0%
GAAGGGGAAGATTGTTGAGA+AGG + chr5_1:52977187-52977206 None:intergenic 45.0%
! ATCGCCATTCGGTGAAAGAA+GGG + chr5_1:52977204-52977223 None:intergenic 45.0%
TTTGAACGAGGTCAGATCTG+TGG - chr5_1:52977346-52977365 Msa0736500:CDS 45.0%
! GTGCTTTGAATTACGGTGTG+TGG - chr5_1:52977372-52977391 Msa0736500:CDS 45.0%
TGCGCCGAATTATGGGTTTA+CGG - chr5_1:52977453-52977472 Msa0736500:CDS 45.0%
TATGGGTTTACGGTTGAAGG+TGG - chr5_1:52977463-52977482 Msa0736500:CDS 45.0%
ACATGCCTCTTCAGTATCGT+AGG - chr5_1:52977566-52977585 Msa0736500:intron 45.0%
GGTTTAAATGGTGCGAACAC+GGG + chr5_1:52978330-52978349 None:intergenic 45.0%
CGGTTTAAATGGTGCGAACA+CGG + chr5_1:52978331-52978350 None:intergenic 45.0%
TGTTCGCACCATTTAAACCG+TGG - chr5_1:52978331-52978350 Msa0736500:intron 45.0%
GTTCGCACCATTTAAACCGT+GGG - chr5_1:52978332-52978351 Msa0736500:intron 45.0%
! TGTTGTGTTCTGTTTGGAGC+AGG - chr5_1:52978521-52978540 Msa0736500:CDS 45.0%
GAGCAGGATAAAGTGCAGAA+GGG - chr5_1:52978537-52978556 Msa0736500:CDS 45.0%
AGGATAAAGTGCAGAAGGGA+AGG - chr5_1:52978541-52978560 Msa0736500:CDS 45.0%
ATAAAGTGCAGAAGGGAAGG+TGG - chr5_1:52978544-52978563 Msa0736500:CDS 45.0%
CAGATCCGGTGACTGTAAAT+CGG + chr5_1:52978573-52978592 None:intergenic 45.0%
CATTGTTGCGGTGAAGGTTA+AGG - chr5_1:52978639-52978658 Msa0736500:CDS 45.0%
AAGGTTAAGGGCTCAAGAAC+AGG - chr5_1:52978652-52978671 Msa0736500:CDS 45.0%
TTAAGGGCTCAAGAACAGGT+TGG - chr5_1:52978656-52978675 Msa0736500:CDS 45.0%
GCTTTCAATGGGTCGGAATT+GGG - chr5_1:52978678-52978697 Msa0736500:CDS 45.0%
CTTTCAATGGGTCGGAATTG+GGG - chr5_1:52978679-52978698 Msa0736500:CDS 45.0%
ACAATGTTGCTCCGAAAGAC+TGG - chr5_1:52978788-52978807 Msa0736500:CDS 45.0%
AATGGGAAAGGGAAAGAGAC+TGG + chr5_1:52978888-52978907 None:intergenic 45.0%
GAAGATTGTTGAGAAGGTGG+TGG + chr5_1:52977181-52977200 None:intergenic 45.0%
GAAGGGGAAGATTGTTGAGA+AGG + chr5_1:52977187-52977206 None:intergenic 45.0%
! ATCGCCATTCGGTGAAAGAA+GGG + chr5_1:52977204-52977223 None:intergenic 45.0%
TTTGAACGAGGTCAGATCTG+TGG - chr5_1:52977346-52977365 Msa0736500:CDS 45.0%
! GTGCTTTGAATTACGGTGTG+TGG - chr5_1:52977372-52977391 Msa0736500:CDS 45.0%
TGCGCCGAATTATGGGTTTA+CGG - chr5_1:52977453-52977472 Msa0736500:CDS 45.0%
TATGGGTTTACGGTTGAAGG+TGG - chr5_1:52977463-52977482 Msa0736500:CDS 45.0%
ACATGCCTCTTCAGTATCGT+AGG - chr5_1:52977566-52977585 Msa0736500:intron 45.0%
GGTTTAAATGGTGCGAACAC+GGG + chr5_1:52978330-52978349 None:intergenic 45.0%
CGGTTTAAATGGTGCGAACA+CGG + chr5_1:52978331-52978350 None:intergenic 45.0%
TGTTCGCACCATTTAAACCG+TGG - chr5_1:52978331-52978350 Msa0736500:intron 45.0%
GTTCGCACCATTTAAACCGT+GGG - chr5_1:52978332-52978351 Msa0736500:intron 45.0%
! TGTTGTGTTCTGTTTGGAGC+AGG - chr5_1:52978521-52978540 Msa0736500:CDS 45.0%
GAGCAGGATAAAGTGCAGAA+GGG - chr5_1:52978537-52978556 Msa0736500:CDS 45.0%
AGGATAAAGTGCAGAAGGGA+AGG - chr5_1:52978541-52978560 Msa0736500:CDS 45.0%
ATAAAGTGCAGAAGGGAAGG+TGG - chr5_1:52978544-52978563 Msa0736500:CDS 45.0%
CAGATCCGGTGACTGTAAAT+CGG + chr5_1:52978573-52978592 None:intergenic 45.0%
CATTGTTGCGGTGAAGGTTA+AGG - chr5_1:52978639-52978658 Msa0736500:CDS 45.0%
AAGGTTAAGGGCTCAAGAAC+AGG - chr5_1:52978652-52978671 Msa0736500:CDS 45.0%
TTAAGGGCTCAAGAACAGGT+TGG - chr5_1:52978656-52978675 Msa0736500:CDS 45.0%
GCTTTCAATGGGTCGGAATT+GGG - chr5_1:52978678-52978697 Msa0736500:CDS 45.0%
CTTTCAATGGGTCGGAATTG+GGG - chr5_1:52978679-52978698 Msa0736500:CDS 45.0%
ACAATGTTGCTCCGAAAGAC+TGG - chr5_1:52978788-52978807 Msa0736500:CDS 45.0%
AATGGGAAAGGGAAAGAGAC+TGG + chr5_1:52978888-52978907 None:intergenic 45.0%
TGTTGTTGCAATGGGTGGGT+GGG + chr5_1:52976946-52976965 None:intergenic 50.0%
! TTGTTGTTGCAATGGGTGGG+TGG + chr5_1:52976947-52976966 None:intergenic 50.0%
! AGAAGGTGGTGGTTGAGAAG+AGG + chr5_1:52977170-52977189 None:intergenic 50.0%
GGGGAAGATTGTTGAGAAGG+TGG + chr5_1:52977184-52977203 None:intergenic 50.0%
CTTCCCCTTCTTTCACCGAA+TGG - chr5_1:52977197-52977216 Msa0736500:three_prime_UTR 50.0%
! TCGCCATTCGGTGAAAGAAG+GGG + chr5_1:52977203-52977222 None:intergenic 50.0%
! GATCGCCATTCGGTGAAAGA+AGG + chr5_1:52977205-52977224 None:intergenic 50.0%
ACTGTGTCACGTGGATCTAC+CGG + chr5_1:52977250-52977269 None:intergenic 50.0%
GTAGATCCACGTGACACAGT+CGG - chr5_1:52977250-52977269 Msa0736500:CDS 50.0%
ATCAAAAGCCGGTTACGGCA+TGG - chr5_1:52977297-52977316 Msa0736500:CDS 50.0%
AACAGTTGCCATGCCGTAAC+CGG + chr5_1:52977308-52977327 None:intergenic 50.0%
! GTGGCGCGTGCTTTGAATTA+CGG - chr5_1:52977365-52977384 Msa0736500:CDS 50.0%
GGAGGAGCAGTCAAGTGATA+TGG + chr5_1:52977951-52977970 None:intergenic 50.0%
ATCACTTGACTGCTCCTCCA+AGG - chr5_1:52977952-52977971 Msa0736500:intron 50.0%
AAACCGTGTACGAAACAGGC+TGG - chr5_1:52978264-52978283 Msa0736500:intron 50.0%
AACCGTGTACGAAACAGGCT+GGG - chr5_1:52978265-52978284 Msa0736500:intron 50.0%
GGAGCAGGATAAAGTGCAGA+AGG - chr5_1:52978536-52978555 Msa0736500:CDS 50.0%
GGAGTCCGATTTACAGTCAC+CGG - chr5_1:52978565-52978584 Msa0736500:CDS 50.0%
CGATTTACAGTCACCGGATC+TGG - chr5_1:52978571-52978590 Msa0736500:CDS 50.0%
! GTGCTGATCAGCAATGTTGC+TGG - chr5_1:52978607-52978626 Msa0736500:CDS 50.0%
ATCAGCAATGTTGCTGGCCA+TGG - chr5_1:52978613-52978632 Msa0736500:CDS 50.0%
TGGCCATGGAGACATTGTTG+CGG - chr5_1:52978627-52978646 Msa0736500:CDS 50.0%
TCACCGCAACAATGTCTCCA+TGG + chr5_1:52978633-52978652 None:intergenic 50.0%
TGGAGACATTGTTGCGGTGA+AGG - chr5_1:52978633-52978652 Msa0736500:CDS 50.0%
!! CAGGTTGGCTTTCAATGGGT+CGG - chr5_1:52978671-52978690 Msa0736500:CDS 50.0%
GGCTTTCAATGGGTCGGAAT+TGG - chr5_1:52978677-52978696 Msa0736500:CDS 50.0%
! GCTCCGAAAGACTGGAGTTT+TGG - chr5_1:52978796-52978815 Msa0736500:CDS 50.0%
! AGAGACTGGTCCCTTGAAAC+AGG + chr5_1:52978874-52978893 None:intergenic 50.0%
TGTTGTTGCAATGGGTGGGT+GGG + chr5_1:52976946-52976965 None:intergenic 50.0%
! TTGTTGTTGCAATGGGTGGG+TGG + chr5_1:52976947-52976966 None:intergenic 50.0%
! AGAAGGTGGTGGTTGAGAAG+AGG + chr5_1:52977170-52977189 None:intergenic 50.0%
GGGGAAGATTGTTGAGAAGG+TGG + chr5_1:52977184-52977203 None:intergenic 50.0%
CTTCCCCTTCTTTCACCGAA+TGG - chr5_1:52977197-52977216 Msa0736500:three_prime_UTR 50.0%
! TCGCCATTCGGTGAAAGAAG+GGG + chr5_1:52977203-52977222 None:intergenic 50.0%
! GATCGCCATTCGGTGAAAGA+AGG + chr5_1:52977205-52977224 None:intergenic 50.0%
ACTGTGTCACGTGGATCTAC+CGG + chr5_1:52977250-52977269 None:intergenic 50.0%
GTAGATCCACGTGACACAGT+CGG - chr5_1:52977250-52977269 Msa0736500:CDS 50.0%
ATCAAAAGCCGGTTACGGCA+TGG - chr5_1:52977297-52977316 Msa0736500:CDS 50.0%
AACAGTTGCCATGCCGTAAC+CGG + chr5_1:52977308-52977327 None:intergenic 50.0%
! GTGGCGCGTGCTTTGAATTA+CGG - chr5_1:52977365-52977384 Msa0736500:CDS 50.0%
GGAGGAGCAGTCAAGTGATA+TGG + chr5_1:52977951-52977970 None:intergenic 50.0%
ATCACTTGACTGCTCCTCCA+AGG - chr5_1:52977952-52977971 Msa0736500:intron 50.0%
AAACCGTGTACGAAACAGGC+TGG - chr5_1:52978264-52978283 Msa0736500:intron 50.0%
AACCGTGTACGAAACAGGCT+GGG - chr5_1:52978265-52978284 Msa0736500:intron 50.0%
GGAGCAGGATAAAGTGCAGA+AGG - chr5_1:52978536-52978555 Msa0736500:CDS 50.0%
GGAGTCCGATTTACAGTCAC+CGG - chr5_1:52978565-52978584 Msa0736500:CDS 50.0%
CGATTTACAGTCACCGGATC+TGG - chr5_1:52978571-52978590 Msa0736500:CDS 50.0%
! GTGCTGATCAGCAATGTTGC+TGG - chr5_1:52978607-52978626 Msa0736500:CDS 50.0%
ATCAGCAATGTTGCTGGCCA+TGG - chr5_1:52978613-52978632 Msa0736500:CDS 50.0%
TGGCCATGGAGACATTGTTG+CGG - chr5_1:52978627-52978646 Msa0736500:CDS 50.0%
TCACCGCAACAATGTCTCCA+TGG + chr5_1:52978633-52978652 None:intergenic 50.0%
TGGAGACATTGTTGCGGTGA+AGG - chr5_1:52978633-52978652 Msa0736500:CDS 50.0%
!! CAGGTTGGCTTTCAATGGGT+CGG - chr5_1:52978671-52978690 Msa0736500:CDS 50.0%
GGCTTTCAATGGGTCGGAAT+TGG - chr5_1:52978677-52978696 Msa0736500:CDS 50.0%
! GCTCCGAAAGACTGGAGTTT+TGG - chr5_1:52978796-52978815 Msa0736500:CDS 50.0%
! AGAGACTGGTCCCTTGAAAC+AGG + chr5_1:52978874-52978893 None:intergenic 50.0%
TGTGTCACGTGGATCTACCG+GGG + chr5_1:52977248-52977267 None:intergenic 55.0%
CTGTGTCACGTGGATCTACC+GGG + chr5_1:52977249-52977268 None:intergenic 55.0%
GGTTACGGCATGGCAACTGT+TGG - chr5_1:52977307-52977326 Msa0736500:CDS 55.0%
GGGTTTACGGTTGAAGGTGG+TGG - chr5_1:52977466-52977485 Msa0736500:CDS 55.0%
TAGGGCTGAGTGTGCATTGC+AGG - chr5_1:52978226-52978245 Msa0736500:intron 55.0%
AGCCCAGCCTGTTTCGTACA+CGG + chr5_1:52978270-52978289 None:intergenic 55.0%
GTCGGAATTGGGGCCAAAAC+TGG - chr5_1:52978689-52978708 Msa0736500:CDS 55.0%
TGTGTCACGTGGATCTACCG+GGG + chr5_1:52977248-52977267 None:intergenic 55.0%
CTGTGTCACGTGGATCTACC+GGG + chr5_1:52977249-52977268 None:intergenic 55.0%
GGTTACGGCATGGCAACTGT+TGG - chr5_1:52977307-52977326 Msa0736500:CDS 55.0%
GGGTTTACGGTTGAAGGTGG+TGG - chr5_1:52977466-52977485 Msa0736500:CDS 55.0%
TAGGGCTGAGTGTGCATTGC+AGG - chr5_1:52978226-52978245 Msa0736500:intron 55.0%
AGCCCAGCCTGTTTCGTACA+CGG + chr5_1:52978270-52978289 None:intergenic 55.0%
GTCGGAATTGGGGCCAAAAC+TGG - chr5_1:52978689-52978708 Msa0736500:CDS 55.0%
ATCTACCGGGGCGTAGTAGG+TGG + chr5_1:52977236-52977255 None:intergenic 60.0%
TGGATCTACCGGGGCGTAGT+AGG + chr5_1:52977239-52977258 None:intergenic 60.0%
GATCCACGTGACACAGTCGG+CGG - chr5_1:52977253-52977272 Msa0736500:CDS 60.0%
ATCTACCGGGGCGTAGTAGG+TGG + chr5_1:52977236-52977255 None:intergenic 60.0%
TGGATCTACCGGGGCGTAGT+AGG + chr5_1:52977239-52977258 None:intergenic 60.0%
GATCCACGTGACACAGTCGG+CGG - chr5_1:52977253-52977272 Msa0736500:CDS 60.0%
GCAATGGGTGGGTGGGACAC+TGG + chr5_1:52976939-52976958 None:intergenic 65.0%
GCAATGGGTGGGTGGGACAC+TGG + chr5_1:52976939-52976958 None:intergenic 65.0%
GGCGCGTGCGGATCGCCATT+CGG + chr5_1:52977215-52977234 None:intergenic 70.0%
GGCGTAGTAGGTGGCGCGTG+CGG + chr5_1:52977227-52977246 None:intergenic 70.0%
ACGCGCCACCTACTACGCCC+CGG - chr5_1:52977228-52977247 Msa0736500:exon 70.0%
GGCGCGTGCGGATCGCCATT+CGG + chr5_1:52977215-52977234 None:intergenic 70.0%
GGCGTAGTAGGTGGCGCGTG+CGG + chr5_1:52977227-52977246 None:intergenic 70.0%
ACGCGCCACCTACTACGCCC+CGG - chr5_1:52977228-52977247 Msa0736500:exon 70.0%
! GCGCCGCCGACTGTGTCACG+TGG + chr5_1:52977259-52977278 None:intergenic 75.0%
GACACAGTCGGCGGCGCGTG+TGG - chr5_1:52977262-52977281 Msa0736500:CDS 75.0%
GTCGGCGGCGCGTGTGGCTA+CGG - chr5_1:52977268-52977287 Msa0736500:CDS 75.0%
! GCGCCGCCGACTGTGTCACG+TGG + chr5_1:52977259-52977278 None:intergenic 75.0%
GACACAGTCGGCGGCGCGTG+TGG - chr5_1:52977262-52977281 Msa0736500:CDS 75.0%
GTCGGCGGCGCGTGTGGCTA+CGG - chr5_1:52977268-52977287 Msa0736500:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 52976921 52979168 52976921 ID=Msa0736500;Name=Msa0736500
chr5_1 mRNA 52976921 52979168 52976921 ID=Msa0736500-mRNA-1;Parent=Msa0736500;Name=Msa0736500-mRNA-1;_AED=0.08;_eAED=0.08;_QI=170|1|1|1|1|1|2|316|268
chr5_1 exon 52976921 52977546 52976921 ID=Msa0736500-mRNA-1:exon:14878;Parent=Msa0736500-mRNA-1
chr5_1 exon 52978502 52979168 52978502 ID=Msa0736500-mRNA-1:exon:14877;Parent=Msa0736500-mRNA-1
chr5_1 five_prime_UTR 52978999 52979168 52978999 ID=Msa0736500-mRNA-1:five_prime_utr;Parent=Msa0736500-mRNA-1
chr5_1 CDS 52978502 52978998 52978502 ID=Msa0736500-mRNA-1:cds;Parent=Msa0736500-mRNA-1
chr5_1 CDS 52977237 52977546 52977237 ID=Msa0736500-mRNA-1:cds;Parent=Msa0736500-mRNA-1
chr5_1 three_prime_UTR 52976921 52977236 52976921 ID=Msa0736500-mRNA-1:three_prime_utr;Parent=Msa0736500-mRNA-1
Gene Sequence

>Msa0736500

ATGTTACTTACAACGTTCTTCTTTCTCTTTACACTCTCTTCAACAACAACAACCGTTACATCTCACTACTCTTCTTCCTCTTCTCAACCACCACCTTCTCAACAATCTTCCCCTTCTTTCACCGAATGGCGATCCGCACGCGCCACCTACTACGCCCCGGTAGATCCACGTGACACAGTCGGCGGCGCGTGTGGCTACGGAGACTTATCAAAAGCCGGTTACGGCATGGCAACTGTTGGTCTTAGTGAAGCTTTGTTTGAACGAGGTCAGATCTGTGGCGCGTGCTTTGAATTACGGTGTGTGGATGATTTAAAGTGGTGTATTCCTGGAACTTCGATTATTGTTACTGCTACGAATTTCTGTGCGCCGAATTATGGGTTTACGGTTGAAGGTGGTGGACATTGTAATCCTCCTAATAAGCACTTTGTTCTTCCTATTGATGCTTTTGAGAAGATCGCTATTTGGAAAGCTGGTAACATGCCTCTTCAGTATCGTAGGATAAAGTGCAGAAGGGAAGGTGGAGTCCGATTTACAGTCACCGGATCTGGTATCTTCATTTCAGTGCTGATCAGCAATGTTGCTGGCCATGGAGACATTGTTGCGGTGAAGGTTAAGGGCTCAAGAACAGGTTGGCTTTCAATGGGTCGGAATTGGGGCCAAAACTGGCATATAAACGCGTTACTACAGAATCAACCTCTTTCATTTGAGGTTACGAGTAGTGATGGGAAAACAGTCACGGCTTACAATGTTGCTCCGAAAGACTGGAGTTTTGGACAAACCTTTGAAGGCAAGCAATTTGATTATTAA
Protein sequence

>Msa0736500

MLLTTFFFLFTLSSTTTTVTSHYSSSSSQPPPSQQSSPSFTEWRSARATYYAPVDPRDTVGGACGYGDLSKAGYGMATVGLSEALFERGQICGACFELRCVDDLKWCIPGTSIIVTATNFCAPNYGFTVEGGGHCNPPNKHFVLPIDAFEKIAIWKAGNMPLQYRRIKCRREGGVRFTVTGSGIFISVLISNVAGHGDIVAVKVKGSRTGWLSMGRNWGQNWHINALLQNQPLSFEVTSSDGKTVTAYNVAPKDWSFGQTFEGKQFDY*