Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0654540 | XP_003608332.1 | 97.785 | 316 | 7 | 0 | 29 | 344 | 1 | 316 | 0.0 | 637 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0654540 | sp|O81884|GALDH_ARATH | 77.987 | 318 | 70 | 0 | 27 | 344 | 2 | 319 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001950 | Msa0654540 | 0.846208 | 2.509662e-59 | -8.615850e-47 |
| Msa0005050 | Msa0654540 | 0.812370 | 4.387668e-51 | -8.615850e-47 |
| Msa0016670 | Msa0654540 | 0.814816 | 1.270277e-51 | -8.615850e-47 |
| Msa0017940 | Msa0654540 | 0.825937 | 3.569953e-54 | -8.615850e-47 |
| Msa0024680 | Msa0654540 | 0.803613 | 3.207128e-49 | -8.615850e-47 |
| Msa0027540 | Msa0654540 | 0.805503 | 1.293434e-49 | -8.615850e-47 |
| Msa0030310 | Msa0654540 | 0.826943 | 2.055177e-54 | -8.615850e-47 |
| Msa0032120 | Msa0654540 | 0.819842 | 9.390623e-53 | -8.615850e-47 |
| Msa0032400 | Msa0654540 | 0.832162 | 1.106182e-55 | -8.615850e-47 |
| Msa0032840 | Msa0654540 | -0.816765 | 4.670547e-52 | -8.615850e-47 |
| Msa0044220 | Msa0654540 | 0.816175 | 6.333067e-52 | -8.615850e-47 |
| Msa0050580 | Msa0654540 | 0.844217 | 8.670368e-59 | -8.615850e-47 |
| Msa0053110 | Msa0654540 | 0.823784 | 1.149246e-53 | -8.615850e-47 |
| Msa0072810 | Msa0654540 | 0.802714 | 4.920407e-49 | -8.615850e-47 |
| Msa0090590 | Msa0654540 | 0.801446 | 8.969038e-49 | -8.615850e-47 |
| Msa0095380 | Msa0654540 | 0.803620 | 3.196171e-49 | -8.615850e-47 |
| Msa0120330 | Msa0654540 | 0.801492 | 8.778675e-49 | -8.615850e-47 |
| Msa0607200 | Msa0654540 | 0.807867 | 4.097594e-50 | -8.615850e-47 |
| Msa0633750 | Msa0654540 | 0.811395 | 7.152995e-51 | -8.615850e-47 |
| Msa0639120 | Msa0654540 | 0.803132 | 4.033973e-49 | -8.615850e-47 |
| Msa0640990 | Msa0654540 | 0.815149 | 1.072053e-51 | -8.615850e-47 |
| Msa0642650 | Msa0654540 | 0.831870 | 1.305912e-55 | -8.615850e-47 |
| Msa0647380 | Msa0654540 | 0.808729 | 2.683560e-50 | -8.615850e-47 |
| Msa0654540 | Msa0669850 | 0.801647 | 8.158157e-49 | -8.615850e-47 |
| Msa0654540 | Msa0672110 | 0.820163 | 7.929290e-53 | -8.615850e-47 |
| Msa0654540 | Msa0681890 | 0.804668 | 1.933929e-49 | -8.615850e-47 |
| Msa0654540 | Msa0696620 | 0.913275 | 7.431169e-84 | -8.615850e-47 |
| Msa0654540 | Msa0725920 | 0.817686 | 2.899270e-52 | -8.615850e-47 |
| Msa0654540 | Msa0747780 | 0.817691 | 2.892100e-52 | -8.615850e-47 |
| Msa0654540 | Msa0755340 | 0.818734 | 1.679009e-52 | -8.615850e-47 |
| Msa0654540 | Msa0766470 | 0.803788 | 2.949373e-49 | -8.615850e-47 |
| Msa0654540 | Msa0776220 | 0.806474 | 8.081835e-50 | -8.615850e-47 |
| Msa0654540 | Msa0797120 | 0.803645 | 3.157887e-49 | -8.615850e-47 |
| Msa0654540 | Msa0825020 | 0.809890 | 1.512923e-50 | -8.615850e-47 |
| Msa0654540 | Msa0842230 | 0.812986 | 3.217041e-51 | -8.615850e-47 |
| Msa0654540 | Msa0846030 | 0.834193 | 3.451912e-56 | -8.615850e-47 |
| Msa0654540 | Msa0872310 | 0.810647 | 1.038622e-50 | -8.615850e-47 |
| Msa0654540 | Msa0890250 | 0.816137 | 6.457077e-52 | -8.615850e-47 |
| Msa0654540 | Msa0905550 | 0.816747 | 4.714291e-52 | -8.615850e-47 |
| Msa0654540 | Msa0910400 | 0.819464 | 1.145352e-52 | -8.615850e-47 |
| Msa0654540 | Msa0925160 | 0.810653 | 1.035760e-50 | -8.615850e-47 |
| Msa0654540 | Msa0937550 | 0.834266 | 3.310903e-56 | -8.615850e-47 |
| Msa0654540 | Msa0969400 | 0.822113 | 2.818024e-53 | -8.615850e-47 |
| Msa0654540 | Msa0969700 | 0.812337 | 4.460125e-51 | -8.615850e-47 |
| Msa0654540 | Msa1012440 | 0.812820 | 3.498027e-51 | -8.615850e-47 |
| Msa0654540 | Msa1012700 | 0.817569 | 3.081070e-52 | -8.615850e-47 |
| Msa0654540 | Msa1018790 | 0.844185 | 8.842860e-59 | -8.615850e-47 |
| Msa0654540 | Msa1044340 | 0.826965 | 2.030899e-54 | -8.615850e-47 |
| Msa0654540 | Msa1082700 | 0.809691 | 1.669609e-50 | -8.615850e-47 |
| Msa0654540 | Msa1087810 | 0.810198 | 1.298337e-50 | -8.615850e-47 |
| Msa0654540 | Msa1126510 | 0.804986 | 1.659628e-49 | -8.615850e-47 |
| Msa0654540 | Msa1129560 | 0.810633 | 1.045920e-50 | -8.615850e-47 |
| Msa0654540 | Msa1129720 | 0.805181 | 1.510949e-49 | -8.615850e-47 |
| Msa0654540 | Msa1134110 | 0.835195 | 1.932679e-56 | -8.615850e-47 |
| Msa0654540 | Msa1159100 | 0.830304 | 3.167564e-55 | -8.615850e-47 |
| Msa0654540 | Msa1166860 | 0.802587 | 5.226884e-49 | -8.615850e-47 |
| Msa0654540 | Msa1188940 | 0.810002 | 1.430974e-50 | -8.615850e-47 |
| Msa0654540 | Msa1197110 | 0.827643 | 1.396896e-54 | -8.615850e-47 |
| Msa0654540 | Msa1223840 | 0.812891 | 3.374357e-51 | -8.615850e-47 |
| Msa0654540 | Msa1224670 | 0.830414 | 2.976823e-55 | -8.615850e-47 |
| Msa0654540 | Msa1226620 | 0.846160 | 2.585672e-59 | -8.615850e-47 |
| Msa0654540 | Msa1229700 | 0.825804 | 3.838495e-54 | -8.615850e-47 |
| Msa0654540 | Msa1237030 | 0.809209 | 2.118831e-50 | -8.615850e-47 |
| Msa0654540 | Msa1249870 | 0.836928 | 7.020136e-57 | -8.615850e-47 |
| Msa0654540 | Msa1263030 | 0.806819 | 6.835638e-50 | -8.615850e-47 |
| Msa0654540 | Msa1272330 | 0.807427 | 5.081927e-50 | -8.615850e-47 |
| Msa0654540 | Msa1284520 | 0.811656 | 6.277278e-51 | -8.615850e-47 |
| Msa0654540 | Msa1310290 | 0.830255 | 3.255689e-55 | -8.615850e-47 |
| Msa0654540 | Msa1324000 | 0.837289 | 5.675229e-57 | -8.615850e-47 |
| Msa0654540 | Msa1365870 | 0.817996 | 2.467958e-52 | -8.615850e-47 |
| Msa0654540 | Msa1379570 | 0.823668 | 1.223379e-53 | -8.615850e-47 |
| Msa0654540 | Msa1379990 | 0.801358 | 9.348247e-49 | -8.615850e-47 |
| Msa0654540 | Msa1382310 | 0.846081 | 2.717939e-59 | -8.615850e-47 |
| Msa0654540 | Msa1390310 | 0.806824 | 6.816882e-50 | -8.615850e-47 |
| Msa0654540 | Msa1396000 | 0.853980 | 1.669114e-61 | -8.615850e-47 |
| Msa0654540 | Msa1398480 | 0.822629 | 2.138121e-53 | -8.615850e-47 |
| Msa0654540 | Msa1404190 | 0.806589 | 7.644143e-50 | -8.615850e-47 |
| Msa0654540 | Msa1449880 | 0.827426 | 1.574718e-54 | -8.615850e-47 |
| Msa0654540 | Msa1462500 | 0.825467 | 4.614564e-54 | -8.615850e-47 |
| Msa0141830 | Msa0654540 | 0.833137 | 6.338023e-56 | -8.615850e-47 |
| Msa0143080 | Msa0654540 | 0.801029 | 1.091584e-48 | -8.615850e-47 |
| Msa0143430 | Msa0654540 | 0.811547 | 6.627875e-51 | -8.615850e-47 |
| Msa0147560 | Msa0654540 | 0.801797 | 7.600945e-49 | -8.615850e-47 |
| Msa0172960 | Msa0654540 | -0.808084 | 3.684793e-50 | -8.615850e-47 |
| Msa0183610 | Msa0654540 | 0.808730 | 2.682778e-50 | -8.615850e-47 |
| Msa0183620 | Msa0654540 | 0.814597 | 1.421037e-51 | -8.615850e-47 |
| Msa0183830 | Msa0654540 | 0.801510 | 8.701281e-49 | -8.615850e-47 |
| Msa0185700 | Msa0654540 | 0.832754 | 7.891127e-56 | -8.615850e-47 |
| Msa0194970 | Msa0654540 | 0.802600 | 5.194183e-49 | -8.615850e-47 |
| Msa0200970 | Msa0654540 | 0.800579 | 1.348674e-48 | -8.615850e-47 |
| Msa0207000 | Msa0654540 | 0.803224 | 3.861071e-49 | -8.615850e-47 |
| Msa0230550 | Msa0654540 | -0.815200 | 1.044298e-51 | -8.615850e-47 |
| Msa0236980 | Msa0654540 | 0.805271 | 1.446750e-49 | -8.615850e-47 |
| Msa0369570 | Msa0654540 | 0.807210 | 5.649892e-50 | -8.615850e-47 |
| Msa0413720 | Msa0654540 | 0.821752 | 3.417059e-53 | -8.615850e-47 |
| Msa0422830 | Msa0654540 | 0.802414 | 5.673715e-49 | -8.615850e-47 |
| Msa0422910 | Msa0654540 | 0.807609 | 4.648605e-50 | -8.615850e-47 |
| Msa0425940 | Msa0654540 | 0.834592 | 2.742186e-56 | -8.615850e-47 |
| Msa0426020 | Msa0654540 | 0.819427 | 1.168356e-52 | -8.615850e-47 |
| Msa0426160 | Msa0654540 | 0.834941 | 2.240311e-56 | -8.615850e-47 |
| Msa0431430 | Msa0654540 | 0.807109 | 5.934403e-50 | -8.615850e-47 |
| Msa0461640 | Msa0654540 | 0.843982 | 1.002039e-58 | -8.615850e-47 |
| Msa0464630 | Msa0654540 | 0.808865 | 2.509873e-50 | -8.615850e-47 |
| Msa0476320 | Msa0654540 | 0.804673 | 1.929295e-49 | -8.615850e-47 |
| Msa0241780 | Msa0654540 | 0.818137 | 2.293222e-52 | -8.615850e-47 |
| Msa0246690 | Msa0654540 | 0.809659 | 1.696144e-50 | -8.615850e-47 |
| Msa0323990 | Msa0654540 | 0.827778 | 1.296320e-54 | -8.615850e-47 |
| Msa0505370 | Msa0654540 | 0.824419 | 8.154568e-54 | -8.615850e-47 |
| Msa0510440 | Msa0654540 | 0.802752 | 4.834007e-49 | -8.615850e-47 |
| Msa0520320 | Msa0654540 | 0.812136 | 4.935405e-51 | -8.615850e-47 |
| Msa0521880 | Msa0654540 | 0.800118 | 1.674656e-48 | -8.615850e-47 |
| Msa0524160 | Msa0654540 | 0.801285 | 9.677439e-49 | -8.615850e-47 |
| Msa0526700 | Msa0654540 | 0.807550 | 4.785587e-50 | -8.615850e-47 |
| Msa0527590 | Msa0654540 | 0.842756 | 2.129612e-58 | -8.615850e-47 |
| Msa0527600 | Msa0654540 | 0.837256 | 5.787552e-57 | -8.615850e-47 |
| Msa0532300 | Msa0654540 | 0.811801 | 5.838017e-51 | -8.615850e-47 |
| Msa0532840 | Msa0654540 | 0.802521 | 5.393188e-49 | -8.615850e-47 |
| Msa0533010 | Msa0654540 | 0.805011 | 1.640197e-49 | -8.615850e-47 |
| Msa0544220 | Msa0654540 | 0.811875 | 5.625836e-51 | -8.615850e-47 |
| Msa0546380 | Msa0654540 | 0.803170 | 3.960742e-49 | -8.615850e-47 |
| Msa0546840 | Msa0654540 | 0.811983 | 5.327755e-51 | -8.615850e-47 |
| Msa0560470 | Msa0654540 | 0.807389 | 5.177692e-50 | -8.615850e-47 |
| Msa0563530 | Msa0654540 | 0.812690 | 3.734750e-51 | -8.615850e-47 |
| Msa0581460 | Msa0654540 | 0.830208 | 3.343244e-55 | -8.615850e-47 |
| Msa0591060 | Msa0654540 | 0.807353 | 5.269162e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0654540 | MtrunA17_Chr4g0049341 | 97.785 | 316 | 7 | 0 | 29 | 344 | 1 | 316 | 0.0 | 637 |
| Msa0654540 | MtrunA17_Chr7g0274061 | 28.333 | 300 | 180 | 8 | 34 | 308 | 16 | 305 | 8.61e-23 | 97.4 |
| Msa0654540 | MtrunA17_Chr7g0274041 | 29.889 | 271 | 148 | 9 | 33 | 287 | 11 | 255 | 1.93e-22 | 96.3 |
| Msa0654540 | MtrunA17_Chr1g0169691 | 26.948 | 308 | 187 | 11 | 29 | 308 | 1 | 298 | 3.01e-22 | 95.5 |
| Msa0654540 | MtrunA17_Chr7g0274071 | 27.986 | 293 | 184 | 9 | 34 | 308 | 18 | 301 | 3.68e-21 | 92.8 |
| Msa0654540 | MtrunA17_Chr1g0204651 | 27.969 | 261 | 165 | 8 | 33 | 286 | 9 | 253 | 1.98e-19 | 87.8 |
| Msa0654540 | MtrunA17_Chr7g0222171 | 30.556 | 216 | 136 | 7 | 33 | 243 | 8 | 214 | 7.70e-17 | 80.5 |
| Msa0654540 | MtrunA17_Chr7g0221791 | 31.019 | 216 | 134 | 7 | 33 | 243 | 8 | 213 | 8.97e-17 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0654540 | AT4G33670.1 | 77.987 | 318 | 70 | 0 | 27 | 344 | 2 | 319 | 0.0 | 523 |
| Msa0654540 | AT1G04690.1 | 25.649 | 308 | 191 | 9 | 29 | 308 | 1 | 298 | 1.03e-21 | 94.7 |
| Msa0654540 | AT1G60750.1 | 31.556 | 225 | 139 | 5 | 24 | 242 | 3 | 218 | 1.02e-19 | 89.0 |
| Msa0654540 | AT1G60730.1 | 32.273 | 220 | 134 | 7 | 33 | 247 | 11 | 220 | 2.68e-18 | 85.1 |
| Msa0654540 | AT1G60680.2 | 31.222 | 221 | 136 | 6 | 33 | 247 | 11 | 221 | 7.18e-18 | 82.4 |
| Msa0654540 | AT1G60680.1 | 31.222 | 221 | 136 | 6 | 33 | 247 | 11 | 221 | 1.14e-17 | 83.2 |
| Msa0654540 | AT5G53580.1 | 27.517 | 298 | 179 | 14 | 39 | 308 | 45 | 333 | 2.74e-17 | 82.4 |
| Msa0654540 | AT1G60690.1 | 32.273 | 220 | 134 | 7 | 33 | 247 | 11 | 220 | 3.82e-17 | 81.6 |
| Msa0654540 | AT1G60710.1 | 30.455 | 220 | 138 | 7 | 33 | 247 | 11 | 220 | 1.96e-16 | 79.7 |
| Msa0654540 | AT1G60730.3 | 29.958 | 237 | 137 | 8 | 33 | 247 | 11 | 240 | 3.18e-15 | 76.3 |
Find 99 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTGCTTCCTTCAGTTTC+TGG | 0.033628 | 4_3:+62724123 | None:intergenic |
| CAGTGTCATGATATTGAATT+TGG | 0.090600 | 4_3:-62724317 | Msa0654540:CDS |
| CTCGAAATTTGAAGATATTA+TGG | 0.250466 | 4_3:-62724524 | Msa0654540:intron |
| GCAACTTATTGCAAAGAAAA+TGG | 0.252619 | 4_3:-62722983 | Msa0654540:CDS |
| GCAAGAGAACTTGCAGCTTC+TGG | 0.255338 | 4_3:-62721752 | Msa0654540:CDS |
| TATTTACTTATGTTCTTGAT+AGG | 0.294080 | 4_3:-62724061 | Msa0654540:CDS |
| GCAGTACAGCTTGTTAAATA+AGG | 0.324806 | 4_3:-62722936 | Msa0654540:CDS |
| GACTCGTTTCATTGGGATTA+CGG | 0.334830 | 4_3:-62724099 | Msa0654540:CDS |
| GCTCATCTCCTCCAGCTACT+TGG | 0.339426 | 4_3:-62721610 | Msa0654540:three_prime_UTR |
| TGGGATTACGGGACTTCCTT+TGG | 0.348113 | 4_3:-62724087 | Msa0654540:CDS |
| GGTGAAGCAGGATGCCATTC+AGG | 0.355943 | 4_3:+62723882 | None:intergenic |
| ACTCGTTTCATTGGGATTAC+GGG | 0.365687 | 4_3:-62724098 | Msa0654540:CDS |
| TCTCCTCTCGGAAACGTCTT+CGG | 0.379019 | 4_3:-62724693 | Msa0654540:CDS |
| TCCTGCTTCACCGGAACTTA+AGG | 0.379403 | 4_3:-62723871 | Msa0654540:intron |
| AAACTAAGCTCCGTCGGGTT+CGG | 0.379564 | 4_3:-62724720 | Msa0654540:CDS |
| GCAGGGAAGACTCGTTTCAT+TGG | 0.381344 | 4_3:-62724107 | Msa0654540:CDS |
| TCCTTCAGTTTCTGGAGTGC+AGG | 0.386056 | 4_3:+62724131 | None:intergenic |
| CAGTGCTTCTCCGTTGGCGA+TGG | 0.387532 | 4_3:-62723928 | Msa0654540:CDS |
| CACAAGTGTAGACGAGAGTT+TGG | 0.388926 | 4_3:-62724372 | Msa0654540:CDS |
| TTACGTGAACTTGGAAGAAC+TGG | 0.400346 | 4_3:-62724747 | Msa0654540:CDS |
| CTTCTACTGCTGTTGTAACT+TGG | 0.401378 | 4_3:-62721484 | Msa0654540:three_prime_UTR |
| CAGGGAAGACTCGTTTCATT+GGG | 0.402120 | 4_3:-62724106 | Msa0654540:CDS |
| GCTACAATGTATTCACTTCT+CGG | 0.402496 | 4_3:+62724449 | None:intergenic |
| CTCTGTCAATGATTCGACTT+TGG | 0.415789 | 4_3:-62723994 | Msa0654540:CDS |
| ATTGACAGAGTGATGGCAAT+AGG | 0.422905 | 4_3:+62724007 | None:intergenic |
| CAGCAAGGGGTCAACTCTGC+TGG | 0.427552 | 4_3:+62721654 | None:intergenic |
| ATTCAAAACATCATAGCAAT+GGG | 0.435122 | 4_3:+62721555 | None:intergenic |
| CTCATCTCCTCCAGCTACTT+GGG | 0.435597 | 4_3:-62721609 | Msa0654540:three_prime_UTR |
| ACCTTAAGTTCCGGTGAAGC+AGG | 0.436418 | 4_3:+62723870 | None:intergenic |
| TACTCTTGCTCCCAAGTAGC+TGG | 0.438654 | 4_3:+62721599 | None:intergenic |
| ATGGGTCTTCTCACTGAGGC+TGG | 0.452747 | 4_3:-62723909 | Msa0654540:CDS |
| GTTTGCTTGTTCTTCTGAAA+CGG | 0.454532 | 4_3:+62724668 | None:intergenic |
| CTGAGGCTGGCCCTCCTGAA+TGG | 0.457972 | 4_3:-62723896 | Msa0654540:CDS |
| AACACCCTTGGACTTCAGAT+AGG | 0.459632 | 4_3:+62723959 | None:intergenic |
| CTCCAGAAACTGAAGGAAGC+AGG | 0.467577 | 4_3:-62724125 | Msa0654540:CDS |
| AAAATGGAGTTACGTGAACT+TGG | 0.470953 | 4_3:-62724756 | Msa0654540:CDS |
| ATAAGATTTGAGATACTGTA+TGG | 0.472110 | 4_3:-62721348 | Msa0654540:three_prime_UTR |
| GACCCCTTGCTGCCTGCACA+TGG | 0.477686 | 4_3:-62721643 | Msa0654540:three_prime_UTR |
| TGAATTTGGATCGTTAGATC+AGG | 0.479668 | 4_3:-62724303 | Msa0654540:intron |
| TATTCAAAACATCATAGCAA+TGG | 0.481511 | 4_3:+62721554 | None:intergenic |
| TAGGGTTCCGCCTGGAACAT+TGG | 0.482789 | 4_3:-62724042 | Msa0654540:CDS |
| ATTTACTTATGTTCTTGATA+GGG | 0.486238 | 4_3:-62724060 | Msa0654540:CDS |
| TGGCATGAGATCTGTCGAAC+AGG | 0.491310 | 4_3:-62722894 | Msa0654540:intron |
| GGGTTCGGAGCTTCTCCTCT+CGG | 0.491973 | 4_3:-62724705 | Msa0654540:CDS |
| TGTCAATGATTCGACTTTGG+AGG | 0.493678 | 4_3:-62723991 | Msa0654540:CDS |
| CATTATCAGTGCTTCTCCGT+TGG | 0.494180 | 4_3:-62723934 | Msa0654540:CDS |
| GAAATCACATCGGTTCTTGT+TGG | 0.496899 | 4_3:-62722914 | Msa0654540:CDS |
| AGTATCACATCCAATGTTCC+AGG | 0.498225 | 4_3:+62724032 | None:intergenic |
| TGAATGGCATCCTGCTTCAC+CGG | 0.501096 | 4_3:-62723880 | Msa0654540:CDS |
| GATTACGGGACTTCCTTTGG+AGG | 0.507961 | 4_3:-62724084 | Msa0654540:CDS |
| ACACCATGTGCAGGCAGCAA+GGG | 0.509430 | 4_3:+62721640 | None:intergenic |
| AGTGCTTCTCCGTTGGCGAT+GGG | 0.519640 | 4_3:-62723927 | Msa0654540:CDS |
| TAAGACAAGACCTTAAGTTC+CGG | 0.528236 | 4_3:+62723861 | None:intergenic |
| AACACCATGTGCAGGCAGCA+AGG | 0.531462 | 4_3:+62721639 | None:intergenic |
| GACTTAAACTAAGCTCCGTC+GGG | 0.541712 | 4_3:-62724725 | Msa0654540:CDS |
| ACTGATAATGCCAACACCCT+TGG | 0.547863 | 4_3:+62723947 | None:intergenic |
| TTCTAAATTATACAAACAGA+TGG | 0.550380 | 4_3:+62721510 | None:intergenic |
| GTTCTTGATAGGGTTCCGCC+TGG | 0.552103 | 4_3:-62724050 | Msa0654540:CDS |
| GGACTTAAACTAAGCTCCGT+CGG | 0.552405 | 4_3:-62724726 | Msa0654540:CDS |
| CAAACTCTCGTCTACACTTG+TGG | 0.552478 | 4_3:+62724373 | None:intergenic |
| AAAACATCATAGCAATGGGA+TGG | 0.556593 | 4_3:+62721559 | None:intergenic |
| CAACTCTGCTGGATTCCGCT+AGG | 0.566406 | 4_3:+62721665 | None:intergenic |
| TATCTGAAGTCCAAGGGTGT+TGG | 0.578204 | 4_3:-62723957 | Msa0654540:CDS |
| ACACCCTTGGACTTCAGATA+GGG | 0.582023 | 4_3:+62723960 | None:intergenic |
| AAACATCATAGCAATGGGAT+GGG | 0.593757 | 4_3:+62721560 | None:intergenic |
| TACATTGTAGCAACTAAGTG+TGG | 0.594346 | 4_3:-62724437 | Msa0654540:CDS |
| TCCAGAAACTGAAGGAAGCA+GGG | 0.594834 | 4_3:-62724124 | Msa0654540:CDS |
| GTCTGAGAAAGTGCTCGGAA+AGG | 0.603040 | 4_3:-62724492 | Msa0654540:CDS |
| AGTGCCCTATCTGAAGTCCA+AGG | 0.603565 | 4_3:-62723964 | Msa0654540:CDS |
| ATGGATGACATGAATCATGA+TGG | 0.604779 | 4_3:-62724853 | Msa0654540:exon |
| GAAGCAGGATGCCATTCAGG+AGG | 0.605422 | 4_3:+62723885 | None:intergenic |
| ACATAAGTAAATACCTCCAA+AGG | 0.605576 | 4_3:+62724071 | None:intergenic |
| AGTGTCGAAGAAGTTGATGC+CGG | 0.606690 | 4_3:+62724620 | None:intergenic |
| AGGAGAAGCTCCGAACCCGA+CGG | 0.607761 | 4_3:+62724710 | None:intergenic |
| AGCAGTACGAAAAGTACGAA+TGG | 0.611089 | 4_3:-62724872 | Msa0654540:five_prime_UTR |
| ACACTGTCTGAGAAAGTGCT+CGG | 0.611937 | 4_3:-62724497 | Msa0654540:CDS |
| GTTAAATAAGGAAATCACAT+CGG | 0.614200 | 4_3:-62722924 | Msa0654540:CDS |
| GTGCCCTATCTGAAGTCCAA+GGG | 0.616458 | 4_3:-62723963 | Msa0654540:CDS |
| TTGTAGCAACTAAGTGTGGA+AGG | 0.618298 | 4_3:-62724433 | Msa0654540:CDS |
| TCGAATCATTGACAGAGTGA+TGG | 0.619506 | 4_3:+62724000 | None:intergenic |
| GTGAGAAGACCCATCGCCAA+CGG | 0.621669 | 4_3:+62723918 | None:intergenic |
| ATATAAAAGAAATCTGAGGC+CGG | 0.627728 | 4_3:+62721281 | None:intergenic |
| GAAATTTGAAGATATTATGG+AGG | 0.631142 | 4_3:-62724521 | Msa0654540:intron |
| TCCTGCACTCCAGAAACTGA+AGG | 0.632500 | 4_3:-62724132 | Msa0654540:CDS |
| GAAGCGGCTCTGTCAGAAGT+CGG | 0.634736 | 4_3:-62721722 | Msa0654540:CDS |
| AGAAGCTGCAAGTTCTCTTG+CGG | 0.638741 | 4_3:+62721754 | None:intergenic |
| TAAGATTTGAGATACTGTAT+GGG | 0.640567 | 4_3:-62721347 | Msa0654540:three_prime_UTR |
| CACCATGTGCAGGCAGCAAG+GGG | 0.654902 | 4_3:+62721641 | None:intergenic |
| AAGTGTGGAAGGTACAAAGA+GGG | 0.661768 | 4_3:-62724422 | Msa0654540:CDS |
| TAAGTGTGGAAGGTACAAAG+AGG | 0.663345 | 4_3:-62724423 | Msa0654540:CDS |
| TCTTGCTCCCAAGTAGCTGG+AGG | 0.669791 | 4_3:+62721602 | None:intergenic |
| AAGCAGGATGCCATTCAGGA+GGG | 0.673956 | 4_3:+62723886 | None:intergenic |
| GTGTAGACGAGAGTTTGGAA+AGG | 0.684238 | 4_3:-62724367 | Msa0654540:CDS |
| GATACTGTATGGGACACTGT+AGG | 0.690470 | 4_3:-62721337 | Msa0654540:three_prime_UTR |
| AGCTTCTGGAATCGACGAAG+CGG | 0.691488 | 4_3:-62721738 | Msa0654540:CDS |
| GGCGATGGGTCTTCTCACTG+AGG | 0.694882 | 4_3:-62723913 | Msa0654540:CDS |
| TTGAAAAGCGATACGAACAG+AGG | 0.699253 | 4_3:+62724644 | None:intergenic |
| GAACCGAAGACGTTTCCGAG+AGG | 0.720849 | 4_3:+62724690 | None:intergenic |
| ATCACATCCAATGTTCCAGG+CGG | 0.724421 | 4_3:+62724035 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAAATATAAAGTTTTAATT+TGG | - | chr4_3:62722891-62722910 | Msa0654540:intron | 10.0% |
| !!! | TCTTGTCTTATTATTAATTA+CGG | - | chr4_3:62722327-62722346 | Msa0654540:intron | 15.0% |
| !!! | TAATTTGCTACTAAATTTAT+CGG | - | chr4_3:62722593-62722612 | Msa0654540:intron | 15.0% |
| !! | ACATATATTATCAATTATAG+TGG | + | chr4_3:62724232-62724251 | None:intergenic | 15.0% |
| !!! | TTGATAATATATGTCAATAT+TGG | - | chr4_3:62724238-62724257 | Msa0654540:intron | 15.0% |
| !!! | TATATTTTCTCAATTTAGAA+CGG | + | chr4_3:62724381-62724400 | None:intergenic | 15.0% |
| !!! | TTAAGTTTTTTTATCCAAAG+AGG | - | chr4_3:62721934-62721953 | Msa0654540:intron | 20.0% |
| !! | TATTTACTTATGTTCTTGAT+AGG | - | chr4_3:62722114-62722133 | Msa0654540:intron | 20.0% |
| !! | ATTTACTTATGTTCTTGATA+GGG | - | chr4_3:62722115-62722134 | Msa0654540:intron | 20.0% |
| !!! | AATTTGCTACTAAATTTATC+GGG | - | chr4_3:62722594-62722613 | Msa0654540:intron | 20.0% |
| !!! | TGCTATTTTTCTTATACAAA+AGG | - | chr4_3:62722620-62722639 | Msa0654540:intron | 20.0% |
| !! | TTTGTATATGTAAATCAGAA+AGG | - | chr4_3:62722733-62722752 | Msa0654540:intron | 20.0% |
| !! | ATTCGTTCAATATATCATAT+GGG | + | chr4_3:62722979-62722998 | None:intergenic | 20.0% |
| !! | AACAAGTACATAATTTATAG+AGG | + | chr4_3:62723490-62723509 | None:intergenic | 20.0% |
| !!! | AACAAGTACATATTTTACAA+AGG | + | chr4_3:62723668-62723687 | None:intergenic | 20.0% |
| !! | CAATACATGTTACTAAATTA+TGG | + | chr4_3:62723863-62723882 | None:intergenic | 20.0% |
| !!! | GTTCTAAATTGAGAAAATAT+AGG | - | chr4_3:62724380-62724399 | Msa0654540:CDS | 20.0% |
| !!! | TTTTGAATAAAAAGTAGTCA+TGG | - | chr4_3:62724635-62724654 | Msa0654540:CDS | 20.0% |
| !! | TTTGAATAAAAAGTAGTCAT+GGG | - | chr4_3:62724636-62724655 | Msa0654540:CDS | 20.0% |
| !! | TTCTAAATTATACAAACAGA+TGG | + | chr4_3:62724668-62724687 | None:intergenic | 20.0% |
| ! | CTCGAAATTTGAAGATATTA+TGG | - | chr4_3:62721651-62721670 | Msa0654540:exon | 25.0% |
| ! | GAAATTTGAAGATATTATGG+AGG | - | chr4_3:62721654-62721673 | Msa0654540:exon | 25.0% |
| ! | AATTTCAGTTGTAACTTAAC+TGG | - | chr4_3:62721961-62721980 | Msa0654540:intron | 25.0% |
| ! | TGATCATAACATGCAAATTA+AGG | + | chr4_3:62722436-62722455 | None:intergenic | 25.0% |
| !! | TTTTTGTGCAAAAGATGATT+TGG | + | chr4_3:62722562-62722581 | None:intergenic | 25.0% |
| !! | GTTTATGTTGTTGTTGTAAA+AGG | - | chr4_3:62722670-62722689 | Msa0654540:intron | 25.0% |
| ! | TTCGTTCAATATATCATATG+GGG | + | chr4_3:62722978-62722997 | None:intergenic | 25.0% |
| ! | CATTCGTTCAATATATCATA+TGG | + | chr4_3:62722980-62722999 | None:intergenic | 25.0% |
| ! | CATATTTCATCAAAACTAAC+TGG | - | chr4_3:62723123-62723142 | Msa0654540:intron | 25.0% |
| ! | GTTAAATAAGGAAATCACAT+CGG | - | chr4_3:62723251-62723270 | Msa0654540:intron | 25.0% |
| ! | AATTATGTACTTGTTTAGCT+TGG | - | chr4_3:62723495-62723514 | Msa0654540:intron | 25.0% |
| !! | AACAAGTACATATTTTACAG+AGG | + | chr4_3:62723579-62723598 | None:intergenic | 25.0% |
| ! | AAATATGTACTTGTTTAGCT+TGG | - | chr4_3:62723584-62723603 | Msa0654540:intron | 25.0% |
| ! | AATGCAATATTTAAGCAAGT+GGG | - | chr4_3:62723755-62723774 | Msa0654540:intron | 25.0% |
| ! | ATAACCTATCACATAATTTG+TGG | - | chr4_3:62723800-62723819 | Msa0654540:intron | 25.0% |
| ! | AAATGTCAATCTCTTAACAA+AGG | + | chr4_3:62723900-62723919 | None:intergenic | 25.0% |
| ! | TACACTATAATAAGCAAACA+TGG | - | chr4_3:62724050-62724069 | Msa0654540:CDS | 25.0% |
| ! | CTAAATTGAGAAAATATAGG+TGG | - | chr4_3:62724383-62724402 | Msa0654540:CDS | 25.0% |
| ! | ATTCAAAACATCATAGCAAT+GGG | + | chr4_3:62724623-62724642 | None:intergenic | 25.0% |
| ! | TATTCAAAACATCATAGCAA+TGG | + | chr4_3:62724624-62724643 | None:intergenic | 25.0% |
| !! | ATAAGATTTGAGATACTGTA+TGG | - | chr4_3:62724827-62724846 | Msa0654540:CDS | 25.0% |
| !! | TAAGATTTGAGATACTGTAT+GGG | - | chr4_3:62724828-62724847 | Msa0654540:CDS | 25.0% |
| !!! | GCATTTTTTATGTTATACAC+CGG | - | chr4_3:62724875-62724894 | Msa0654540:five_prime_UTR | 25.0% |
| TGAAATGAAAAAAGAGAGAG+AGG | + | chr4_3:62721597-62721616 | None:intergenic | 30.0% | |
| CAGTGTCATGATATTGAATT+TGG | - | chr4_3:62721858-62721877 | Msa0654540:intron | 30.0% | |
| AACTGAAATTAGATCCTCTT+TGG | + | chr4_3:62721951-62721970 | None:intergenic | 30.0% | |
| TAACTGGTAACTGTATTTCA+AGG | - | chr4_3:62721977-62721996 | Msa0654540:intron | 30.0% | |
| AACTGGTAACTGTATTTCAA+GGG | - | chr4_3:62721978-62721997 | Msa0654540:intron | 30.0% | |
| ACATAAGTAAATACCTCCAA+AGG | + | chr4_3:62722107-62722126 | None:intergenic | 30.0% | |
| ! | AAAACTAGCTTACAACACTA+AGG | + | chr4_3:62722461-62722480 | None:intergenic | 30.0% |
| ATACAAAAGGATAACGTTAG+TGG | - | chr4_3:62722633-62722652 | Msa0654540:intron | 30.0% | |
| TACAAAAGGATAACGTTAGT+GGG | - | chr4_3:62722634-62722653 | Msa0654540:intron | 30.0% | |
| TTGTAAAAGGATAACGTTTC+CGG | - | chr4_3:62722683-62722702 | Msa0654540:intron | 30.0% | |
| AGAACTAAGTTCTTATACAC+CGG | + | chr4_3:62722705-62722724 | None:intergenic | 30.0% | |
| ! | CTCAATTTTCTGTATTTCTC+TGG | + | chr4_3:62722771-62722790 | None:intergenic | 30.0% |
| GAAATACAGAAAATTGAGCA+TGG | - | chr4_3:62722773-62722792 | Msa0654540:intron | 30.0% | |
| TCGTTCAATATATCATATGG+GGG | + | chr4_3:62722977-62722996 | None:intergenic | 30.0% | |
| ATCACTGCATTCAATATTCT+TGG | - | chr4_3:62723000-62723019 | Msa0654540:CDS | 30.0% | |
| !!! | CTGGTTCTATGTATTTTGTT+TGG | - | chr4_3:62723142-62723161 | Msa0654540:intron | 30.0% |
| GCAACTTATTGCAAAGAAAA+TGG | - | chr4_3:62723192-62723211 | Msa0654540:intron | 30.0% | |
| ! | AATCACAGATTTTCAGAACA+TGG | + | chr4_3:62723354-62723373 | None:intergenic | 30.0% |
| !! | TGTTCTGAAAATCTGTGATT+TGG | - | chr4_3:62723354-62723373 | Msa0654540:intron | 30.0% |
| AATGAAAACAACAAAGAGAG+AGG | + | chr4_3:62723447-62723466 | None:intergenic | 30.0% | |
| AATGAAAACAACAAAGAGAG+AGG | + | chr4_3:62723447-62723466 | None:intergenic | 30.0% | |
| AATGAAAACAACAAAGAGAG+AGG | + | chr4_3:62723447-62723466 | None:intergenic | 30.0% | |
| CACTTGCTTAAATATTGCAT+TGG | + | chr4_3:62723756-62723775 | None:intergenic | 30.0% | |
| CAATGCAATATTTAAGCAAG+TGG | - | chr4_3:62723754-62723773 | Msa0654540:intron | 30.0% | |
| AACTCCACAAATTATGTGAT+AGG | + | chr4_3:62723807-62723826 | None:intergenic | 30.0% | |
| GAACTACTTGCAAATCATTT+GGG | + | chr4_3:62724004-62724023 | None:intergenic | 30.0% | |
| AGAACTACTTGCAAATCATT+TGG | + | chr4_3:62724005-62724024 | None:intergenic | 30.0% | |
| TATGTCAATATTGGAGTTCT+TGG | - | chr4_3:62724247-62724266 | Msa0654540:intron | 30.0% | |
| ATGTCAATATTGGAGTTCTT+GGG | - | chr4_3:62724248-62724267 | Msa0654540:intron | 30.0% | |
| AATTGAGAAAATATAGGTGG+AGG | - | chr4_3:62724386-62724405 | Msa0654540:CDS | 30.0% | |
| !!! | ATTTTTGACAGGCTTTAGAA+TGG | + | chr4_3:62724481-62724500 | None:intergenic | 30.0% |
| AATAAAAAGTAGTCATGGGT+TGG | - | chr4_3:62724640-62724659 | Msa0654540:CDS | 30.0% | |
| ATGGATGACATGAATCATGA+TGG | - | chr4_3:62721322-62721341 | Msa0654540:three_prime_UTR | 35.0% | |
| GAGAGAAAAAGAGTCGAAAA+TGG | - | chr4_3:62721403-62721422 | Msa0654540:three_prime_UTR | 35.0% | |
| AAAATGGAGTTACGTGAACT+TGG | - | chr4_3:62721419-62721438 | Msa0654540:three_prime_UTR | 35.0% | |
| ! | GTTTGCTTGTTCTTCTGAAA+CGG | + | chr4_3:62721510-62721529 | None:intergenic | 35.0% |
| GCTACAATGTATTCACTTCT+CGG | + | chr4_3:62721729-62721748 | None:intergenic | 35.0% | |
| TACATTGTAGCAACTAAGTG+TGG | - | chr4_3:62721738-62721757 | Msa0654540:CDS | 35.0% | |
| TGAATTTGGATCGTTAGATC+AGG | - | chr4_3:62721872-62721891 | Msa0654540:intron | 35.0% | |
| ACTGGTAACTGTATTTCAAG+GGG | - | chr4_3:62721979-62721998 | Msa0654540:intron | 35.0% | |
| TAAGACAAGACCTTAAGTTC+CGG | + | chr4_3:62722317-62722336 | None:intergenic | 35.0% | |
| ! | AGACCTAATTTGAGTTCACT+TGG | - | chr4_3:62722390-62722409 | Msa0654540:intron | 35.0% |
| CTACCAAGTGAACTCAAATT+AGG | + | chr4_3:62722396-62722415 | None:intergenic | 35.0% | |
| AAACATCATTCAGTACTAGG+AGG | + | chr4_3:62723041-62723060 | None:intergenic | 35.0% | |
| CACAAACATCATTCAGTACT+AGG | + | chr4_3:62723044-62723063 | None:intergenic | 35.0% | |
| ! | CTAGTACTGAATGATGTTTG+TGG | - | chr4_3:62723042-62723061 | Msa0654540:intron | 35.0% |
| ! | GAATCACTGTTTTCTGCTTA+TGG | - | chr4_3:62723088-62723107 | Msa0654540:intron | 35.0% |
| !! | GCAGTACAGCTTGTTAAATA+AGG | - | chr4_3:62723239-62723258 | Msa0654540:intron | 35.0% |
| ATGTGATAGGTTATTCGTCT+AGG | + | chr4_3:62723794-62723813 | None:intergenic | 35.0% | |
| ! | TTTTGTGCCGTAAAACAAGT+GGG | - | chr4_3:62723825-62723844 | Msa0654540:intron | 35.0% |
| !!! | ATGATAGCCCACTTGTTTTA+CGG | + | chr4_3:62723835-62723854 | None:intergenic | 35.0% |
| ! | ACATGTATTGATCCGTTTGA+AGG | - | chr4_3:62723873-62723892 | Msa0654540:CDS | 35.0% |
| CTTAACAAAGGACCTTCAAA+CGG | + | chr4_3:62723888-62723907 | None:intergenic | 35.0% | |
| GTTCATCTTAATCAAGTGAC+TGG | + | chr4_3:62724359-62724378 | None:intergenic | 35.0% | |
| AAACATCATAGCAATGGGAT+GGG | + | chr4_3:62724618-62724637 | None:intergenic | 35.0% | |
| AAAACATCATAGCAATGGGA+TGG | + | chr4_3:62724619-62724638 | None:intergenic | 35.0% | |
| ! | AGCAGTACGAAAAGTACGAA+TGG | - | chr4_3:62721303-62721322 | Msa0654540:three_prime_UTR | 40.0% |
| TTACGTGAACTTGGAAGAAC+TGG | - | chr4_3:62721428-62721447 | Msa0654540:three_prime_UTR | 40.0% | |
| TTGAAAAGCGATACGAACAG+AGG | + | chr4_3:62721534-62721553 | None:intergenic | 40.0% | |
| !! | GTTCGTATCGCTTTTCAATC+CGG | - | chr4_3:62721536-62721555 | Msa0654540:three_prime_UTR | 40.0% |
| ! | GAGAGAGAGGAATTTGCTTA+CGG | + | chr4_3:62721584-62721603 | None:intergenic | 40.0% |
| TTGTAGCAACTAAGTGTGGA+AGG | - | chr4_3:62721742-62721761 | Msa0654540:CDS | 40.0% | |
| ! | TAAGTGTGGAAGGTACAAAG+AGG | - | chr4_3:62721752-62721771 | Msa0654540:CDS | 40.0% |
| ! | AAGTGTGGAAGGTACAAAGA+GGG | - | chr4_3:62721753-62721772 | Msa0654540:CDS | 40.0% |
| GACTCGTTTCATTGGGATTA+CGG | - | chr4_3:62722076-62722095 | Msa0654540:intron | 40.0% | |
| ACTCGTTTCATTGGGATTAC+GGG | - | chr4_3:62722077-62722096 | Msa0654540:intron | 40.0% | |
| AGTATCACATCCAATGTTCC+AGG | + | chr4_3:62722146-62722165 | None:intergenic | 40.0% | |
| ATTGACAGAGTGATGGCAAT+AGG | + | chr4_3:62722171-62722190 | None:intergenic | 40.0% | |
| TCGAATCATTGACAGAGTGA+TGG | + | chr4_3:62722178-62722197 | None:intergenic | 40.0% | |
| CTCTGTCAATGATTCGACTT+TGG | - | chr4_3:62722181-62722200 | Msa0654540:intron | 40.0% | |
| TGTCAATGATTCGACTTTGG+AGG | - | chr4_3:62722184-62722203 | Msa0654540:intron | 40.0% | |
| !! | TGCAAAAGATGATTTGGTGC+AGG | + | chr4_3:62722556-62722575 | None:intergenic | 40.0% |
| AAGGATAACGTTAGTGGGAT+AGG | - | chr4_3:62722639-62722658 | Msa0654540:intron | 40.0% | |
| AGGATAACGTTAGTGGGATA+GGG | - | chr4_3:62722640-62722659 | Msa0654540:intron | 40.0% | |
| TATGGGGGAAATCAGTAGTT+TGG | + | chr4_3:62722962-62722981 | None:intergenic | 40.0% | |
| ! | ACTGTTTTCTGCTTATGGTC+TGG | - | chr4_3:62723093-62723112 | Msa0654540:intron | 40.0% |
| !! | GAAATCACATCGGTTCTTGT+TGG | - | chr4_3:62723261-62723280 | Msa0654540:intron | 40.0% |
| !! | TAAGCCTTGCTCTAAAGCTT+TGG | - | chr4_3:62723389-62723408 | Msa0654540:intron | 40.0% |
| !! | GATACCAAAGCTTTAGAGCA+AGG | + | chr4_3:62723396-62723415 | None:intergenic | 40.0% |
| CTTTGGTATCACTGTATAGC+TGG | - | chr4_3:62723406-62723425 | Msa0654540:intron | 40.0% | |
| AGAGAGAGGTAACAATCTGA+TGG | + | chr4_3:62723433-62723452 | None:intergenic | 40.0% | |
| ! | GTTTTGTGCCGTAAAACAAG+TGG | - | chr4_3:62723824-62723843 | Msa0654540:intron | 40.0% |
| AGATTGACATTTGCGTGCAT+TGG | - | chr4_3:62723908-62723927 | Msa0654540:CDS | 40.0% | |
| ! | TAGAGTAGAGAGTATGAGGA+AGG | + | chr4_3:62724090-62724109 | None:intergenic | 40.0% |
| ! | TTGGTAGAGTAGAGAGTATG+AGG | + | chr4_3:62724094-62724113 | None:intergenic | 40.0% |
| ATACTCTCTACTCTACCAAC+AGG | - | chr4_3:62724095-62724114 | Msa0654540:CDS | 40.0% | |
| ! | ACCAACAGGAGTATGAAAAG+TGG | - | chr4_3:62724109-62724128 | Msa0654540:CDS | 40.0% |
| !! | TCCACTTTTCATACTCCTGT+TGG | + | chr4_3:62724113-62724132 | None:intergenic | 40.0% |
| AGCCTGTCAAAAATCAGTCA+TGG | - | chr4_3:62724487-62724506 | Msa0654540:CDS | 40.0% | |
| AAAAATCAGTCATGGCCTAG+CGG | - | chr4_3:62724495-62724514 | Msa0654540:CDS | 40.0% | |
| CTTCTACTGCTGTTGTAACT+TGG | - | chr4_3:62724691-62724710 | Msa0654540:CDS | 40.0% | |
| GGACTTAAACTAAGCTCCGT+CGG | - | chr4_3:62721449-62721468 | Msa0654540:three_prime_UTR | 45.0% | |
| GACTTAAACTAAGCTCCGTC+GGG | - | chr4_3:62721450-62721469 | Msa0654540:three_prime_UTR | 45.0% | |
| !! | AGTGTCGAAGAAGTTGATGC+CGG | + | chr4_3:62721558-62721577 | None:intergenic | 45.0% |
| !! | ACACTGTCTGAGAAAGTGCT+CGG | - | chr4_3:62721678-62721697 | Msa0654540:CDS | 45.0% |
| CAAACTCTCGTCTACACTTG+TGG | + | chr4_3:62721805-62721824 | None:intergenic | 45.0% | |
| CACAAGTGTAGACGAGAGTT+TGG | - | chr4_3:62721803-62721822 | Msa0654540:intron | 45.0% | |
| GTGTAGACGAGAGTTTGGAA+AGG | - | chr4_3:62721808-62721827 | Msa0654540:intron | 45.0% | |
| TCCAGAAACTGAAGGAAGCA+GGG | - | chr4_3:62722051-62722070 | Msa0654540:intron | 45.0% | |
| CAGGGAAGACTCGTTTCATT+GGG | - | chr4_3:62722069-62722088 | Msa0654540:intron | 45.0% | |
| ATCACATCCAATGTTCCAGG+CGG | + | chr4_3:62722143-62722162 | None:intergenic | 45.0% | |
| ACACCCTTGGACTTCAGATA+GGG | + | chr4_3:62722218-62722237 | None:intergenic | 45.0% | |
| AACACCCTTGGACTTCAGAT+AGG | + | chr4_3:62722219-62722238 | None:intergenic | 45.0% | |
| ! | TATCTGAAGTCCAAGGGTGT+TGG | - | chr4_3:62722218-62722237 | Msa0654540:intron | 45.0% |
| ! | ACTGATAATGCCAACACCCT+TGG | + | chr4_3:62722231-62722250 | None:intergenic | 45.0% |
| CATTATCAGTGCTTCTCCGT+TGG | - | chr4_3:62722241-62722260 | Msa0654540:intron | 45.0% | |
| !! | TAAGCAAGTGGGCTATCATC+AGG | - | chr4_3:62723766-62723785 | Msa0654540:intron | 45.0% |
| AGAAGCTGCAAGTTCTCTTG+CGG | + | chr4_3:62724424-62724443 | None:intergenic | 45.0% | |
| !! | GGCCATGACTGATTTTTGAC+AGG | + | chr4_3:62724492-62724511 | None:intergenic | 45.0% |
| GCACAAAAAACACCATGTGC+AGG | + | chr4_3:62724547-62724566 | None:intergenic | 45.0% | |
| GATACTGTATGGGACACTGT+AGG | - | chr4_3:62724838-62724857 | Msa0654540:CDS | 45.0% | |
| AAACTAAGCTCCGTCGGGTT+CGG | - | chr4_3:62721455-62721474 | Msa0654540:three_prime_UTR | 50.0% | |
| TCTCCTCTCGGAAACGTCTT+CGG | - | chr4_3:62721482-62721501 | Msa0654540:three_prime_UTR | 50.0% | |
| !! | GTCTGAGAAAGTGCTCGGAA+AGG | - | chr4_3:62721683-62721702 | Msa0654540:CDS | 50.0% |
| TCCTGCACTCCAGAAACTGA+AGG | - | chr4_3:62722043-62722062 | Msa0654540:intron | 50.0% | |
| !! | TCCTTCAGTTTCTGGAGTGC+AGG | + | chr4_3:62722047-62722066 | None:intergenic | 50.0% |
| CTCCAGAAACTGAAGGAAGC+AGG | - | chr4_3:62722050-62722069 | Msa0654540:intron | 50.0% | |
| TCCCTGCTTCCTTCAGTTTC+TGG | + | chr4_3:62722055-62722074 | None:intergenic | 50.0% | |
| GCAGGGAAGACTCGTTTCAT+TGG | - | chr4_3:62722068-62722087 | Msa0654540:intron | 50.0% | |
| TGGGATTACGGGACTTCCTT+TGG | - | chr4_3:62722088-62722107 | Msa0654540:intron | 50.0% | |
| GATTACGGGACTTCCTTTGG+AGG | - | chr4_3:62722091-62722110 | Msa0654540:intron | 50.0% | |
| ! | AGTGCCCTATCTGAAGTCCA+AGG | - | chr4_3:62722211-62722230 | Msa0654540:intron | 50.0% |
| ! | GTGCCCTATCTGAAGTCCAA+GGG | - | chr4_3:62722212-62722231 | Msa0654540:intron | 50.0% |
| AAGCAGGATGCCATTCAGGA+GGG | + | chr4_3:62722292-62722311 | None:intergenic | 50.0% | |
| TGAATGGCATCCTGCTTCAC+CGG | - | chr4_3:62722295-62722314 | Msa0654540:intron | 50.0% | |
| TCCTGCTTCACCGGAACTTA+AGG | - | chr4_3:62722304-62722323 | Msa0654540:intron | 50.0% | |
| ACCTTAAGTTCCGGTGAAGC+AGG | + | chr4_3:62722308-62722327 | None:intergenic | 50.0% | |
| TGGCATGAGATCTGTCGAAC+AGG | - | chr4_3:62723281-62723300 | Msa0654540:intron | 50.0% | |
| TTGGAGTTCTTGGGTGCACT+AGG | - | chr4_3:62724257-62724276 | Msa0654540:intron | 50.0% | |
| GCAAGAGAACTTGCAGCTTC+TGG | - | chr4_3:62724423-62724442 | Msa0654540:CDS | 50.0% | |
| !! | AGCTTCTGGAATCGACGAAG+CGG | - | chr4_3:62724437-62724456 | Msa0654540:CDS | 50.0% |
| CTCATCTCCTCCAGCTACTT+GGG | - | chr4_3:62724566-62724585 | Msa0654540:intron | 50.0% | |
| TACTCTTGCTCCCAAGTAGC+TGG | + | chr4_3:62724579-62724598 | None:intergenic | 50.0% | |
| GAACCGAAGACGTTTCCGAG+AGG | + | chr4_3:62721488-62721507 | None:intergenic | 55.0% | |
| GTTCTTGATAGGGTTCCGCC+TGG | - | chr4_3:62722125-62722144 | Msa0654540:intron | 55.0% | |
| TAGGGTTCCGCCTGGAACAT+TGG | - | chr4_3:62722133-62722152 | Msa0654540:intron | 55.0% | |
| AGTGCTTCTCCGTTGGCGAT+GGG | - | chr4_3:62722248-62722267 | Msa0654540:intron | 55.0% | |
| GTGAGAAGACCCATCGCCAA+CGG | + | chr4_3:62722260-62722279 | None:intergenic | 55.0% | |
| ATGGGTCTTCTCACTGAGGC+TGG | - | chr4_3:62722266-62722285 | Msa0654540:intron | 55.0% | |
| GAAGCAGGATGCCATTCAGG+AGG | + | chr4_3:62722293-62722312 | None:intergenic | 55.0% | |
| GGTGAAGCAGGATGCCATTC+AGG | + | chr4_3:62722296-62722315 | None:intergenic | 55.0% | |
| GAAGCGGCTCTGTCAGAAGT+CGG | - | chr4_3:62724453-62724472 | Msa0654540:CDS | 55.0% | |
| CAACTCTGCTGGATTCCGCT+AGG | + | chr4_3:62724513-62724532 | None:intergenic | 55.0% | |
| ACACCATGTGCAGGCAGCAA+GGG | + | chr4_3:62724538-62724557 | None:intergenic | 55.0% | |
| AACACCATGTGCAGGCAGCA+AGG | + | chr4_3:62724539-62724558 | None:intergenic | 55.0% | |
| GCTCATCTCCTCCAGCTACT+TGG | - | chr4_3:62724565-62724584 | Msa0654540:intron | 55.0% | |
| TCTTGCTCCCAAGTAGCTGG+AGG | + | chr4_3:62724576-62724595 | None:intergenic | 55.0% | |
| AGGAGAAGCTCCGAACCCGA+CGG | + | chr4_3:62721468-62721487 | None:intergenic | 60.0% | |
| GGGTTCGGAGCTTCTCCTCT+CGG | - | chr4_3:62721470-62721489 | Msa0654540:three_prime_UTR | 60.0% | |
| CAGTGCTTCTCCGTTGGCGA+TGG | - | chr4_3:62722247-62722266 | Msa0654540:intron | 60.0% | |
| GGCGATGGGTCTTCTCACTG+AGG | - | chr4_3:62722262-62722281 | Msa0654540:intron | 60.0% | |
| CAGCAAGGGGTCAACTCTGC+TGG | + | chr4_3:62724524-62724543 | None:intergenic | 60.0% | |
| CACCATGTGCAGGCAGCAAG+GGG | + | chr4_3:62724537-62724556 | None:intergenic | 60.0% | |
| ! | CTGAGGCTGGCCCTCCTGAA+TGG | - | chr4_3:62722279-62722298 | Msa0654540:intron | 65.0% |
| GACCCCTTGCTGCCTGCACA+TGG | - | chr4_3:62724532-62724551 | Msa0654540:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 62721293 | 62724904 | 62721293 | ID=Msa0654540;Name=Msa0654540 |
| chr4_3 | mRNA | 62721293 | 62724904 | 62721293 | ID=Msa0654540-mRNA-1;Parent=Msa0654540;Name=Msa0654540-mRNA-1;_AED=0.04;_eAED=0.04;_QI=45|1|1|1|1|1|5|371|344 |
| chr4_3 | exon | 62721293 | 62721795 | 62721293 | ID=Msa0654540-mRNA-1:exon:17545;Parent=Msa0654540-mRNA-1 |
| chr4_3 | exon | 62722895 | 62723023 | 62722895 | ID=Msa0654540-mRNA-1:exon:17544;Parent=Msa0654540-mRNA-1 |
| chr4_3 | exon | 62723872 | 62724171 | 62723872 | ID=Msa0654540-mRNA-1:exon:17543;Parent=Msa0654540-mRNA-1 |
| chr4_3 | exon | 62724304 | 62724532 | 62724304 | ID=Msa0654540-mRNA-1:exon:17542;Parent=Msa0654540-mRNA-1 |
| chr4_3 | exon | 62724615 | 62724904 | 62724615 | ID=Msa0654540-mRNA-1:exon:17541;Parent=Msa0654540-mRNA-1 |
| chr4_3 | five_prime_UTR | 62724860 | 62724904 | 62724860 | ID=Msa0654540-mRNA-1:five_prime_utr;Parent=Msa0654540-mRNA-1 |
| chr4_3 | CDS | 62724615 | 62724859 | 62724615 | ID=Msa0654540-mRNA-1:cds;Parent=Msa0654540-mRNA-1 |
| chr4_3 | CDS | 62724304 | 62724532 | 62724304 | ID=Msa0654540-mRNA-1:cds;Parent=Msa0654540-mRNA-1 |
| chr4_3 | CDS | 62723872 | 62724171 | 62723872 | ID=Msa0654540-mRNA-1:cds;Parent=Msa0654540-mRNA-1 |
| chr4_3 | CDS | 62722895 | 62723023 | 62722895 | ID=Msa0654540-mRNA-1:cds;Parent=Msa0654540-mRNA-1 |
| chr4_3 | CDS | 62721664 | 62721795 | 62721664 | ID=Msa0654540-mRNA-1:cds;Parent=Msa0654540-mRNA-1 |
| chr4_3 | three_prime_UTR | 62721293 | 62721663 | 62721293 | ID=Msa0654540-mRNA-1:three_prime_utr;Parent=Msa0654540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
