AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1055260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1055260 MtrunA17_Chr7g0226451 89.577 355 16 6 1 344 1 345 0.0 521
Msa1055260 MtrunA17_Chr5g0431351 38.843 121 41 3 224 344 123 210 2.03e-16 77.4
Msa1055260 MtrunA17_Chr4g0071811 38.261 115 42 3 230 344 293 378 8.16e-15 75.1
Msa1055260 MtrunA17_Chr8g0390971 35.404 161 54 7 192 344 276 394 4.26e-14 73.2
Msa1055260 MtrunA17_Chr1g0209861 38.281 128 46 5 225 344 316 418 4.32e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1055260 AT5G14370.1 36.740 362 179 15 1 344 1 330 1.69e-41 149
Msa1055260 AT5G57180.1 42.149 121 35 3 227 347 337 422 5.49e-19 88.2
Msa1055260 AT5G57180.2 42.373 118 33 3 227 344 337 419 3.74e-18 85.9
Msa1055260 AT4G25990.3 40.336 119 38 2 227 345 293 378 9.76e-17 81.3
Msa1055260 AT4G25990.2 40.000 125 38 3 227 347 293 384 1.48e-16 80.9
Msa1055260 AT4G25990.1 40.678 118 37 2 227 344 293 377 1.57e-16 80.9
Msa1055260 AT1G73870.1 40.310 129 46 5 224 344 276 381 4.47e-16 79.3
Msa1055260 AT1G07050.2 79.487 39 8 0 307 345 150 188 1.58e-13 69.3
Msa1055260 AT1G25440.1 37.500 120 60 3 225 344 293 397 1.73e-13 71.6
Msa1055260 AT1G07050.1 81.579 38 7 0 307 344 150 187 1.89e-13 68.9
Msa1055260 AT1G68520.1 35.537 121 63 4 224 344 288 393 3.12e-12 67.8

Find 80 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTATTTGTACAGGTATTA+TGG 0.141690 7_2:-29118257 Msa1055260:intron
CTCTGCCACCCTTCTTTGTT+AGG 0.206880 7_2:+29117401 None:intergenic
GTAGAGTTTCTCGGAGTTAC+AGG 0.248195 7_2:+29117453 None:intergenic
GGTTATGGGTGTGATGTTAA+TGG 0.287554 7_2:-29118231 Msa1055260:CDS
TTGCTAGCTCCAACACCTTC+AGG 0.321383 7_2:+29118192 None:intergenic
GGTATTTGTACAGGTATTAT+GGG 0.322694 7_2:-29118256 Msa1055260:intron
TTGAATGCTTGGTCTGATAA+AGG 0.338505 7_2:-29119499 Msa1055260:CDS
CAGGTATTATGGGATGGTTA+TGG 0.341791 7_2:-29118246 Msa1055260:CDS
AATGGAAGAAAGTAGAATAA+TGG 0.347377 7_2:+29120316 None:intergenic
GCTTGAAACTTGAAAGAAAC+TGG 0.349669 7_2:-29120262 Msa1055260:five_prime_UTR
AGGTATTATGGGATGGTTAT+GGG 0.355741 7_2:-29118245 Msa1055260:CDS
TGAAGAGAGTGAAGAGAGAT+GGG 0.373318 7_2:-29119650 Msa1055260:CDS
AAAGGTTCTCTTTATGTTGA+TGG 0.373469 7_2:-29119481 Msa1055260:CDS
ACCTATGGTTGACTGGTTGC+TGG 0.376351 7_2:+29117377 None:intergenic
ACTGTTCCTGATTTGTTCAA+TGG 0.380895 7_2:-29119439 Msa1055260:CDS
TTCTTCGTGCATGTCGTGTT+CGG 0.387187 7_2:+29119864 None:intergenic
CACCCTTCTTTGTTAGGGTG+TGG 0.406793 7_2:+29117407 None:intergenic
TGTGAAGGTGAAGGAAGAAA+TGG 0.408295 7_2:-29118163 Msa1055260:CDS
TCTGCCACCCTTCTTTGTTA+GGG 0.413375 7_2:+29117402 None:intergenic
GACGGTGGAGCAACGCTAAA+CGG 0.415141 7_2:-29119814 Msa1055260:CDS
ATGAAGAGAGTGAAGAGAGA+TGG 0.416748 7_2:-29119651 Msa1055260:CDS
ATTGAACCATTGAACAAATC+AGG 0.418495 7_2:+29119433 None:intergenic
GAAGAAATGGGTTGGAAGCT+TGG 0.419659 7_2:-29118150 Msa1055260:CDS
AAGAAATGGGTTGGAAGCTT+GGG 0.434227 7_2:-29118149 Msa1055260:CDS
TTTCAGATAGTAGAGTTTCT+CGG 0.448165 7_2:+29117444 None:intergenic
GGAAAGCAATGAGGAGGAAG+AGG 0.454954 7_2:-29119681 Msa1055260:CDS
GTTATGGGTGTGATGTTAAT+GGG 0.457104 7_2:-29118230 Msa1055260:CDS
AAACGTAGACTAAGATACTT+TGG 0.462956 7_2:+29120021 None:intergenic
AGGTGTCCGGTGATGGATCA+AGG 0.465230 7_2:-29119712 Msa1055260:CDS
AGAGACGAAGAAGGAAATGA+TGG 0.504022 7_2:-29119605 Msa1055260:CDS
ATTAGTAAAATTACATTGGG+AGG 0.505856 7_2:+29119409 None:intergenic
AGTGATGAGGTGTCCGGTGA+TGG 0.506901 7_2:-29119719 Msa1055260:CDS
CCGATCTACCTATGGTTGAC+TGG 0.507193 7_2:+29117370 None:intergenic
AGTTGTTGAAGAGACGAAGA+AGG 0.513266 7_2:-29119614 Msa1055260:CDS
GATGACGACGACGGAGGAAG+AGG 0.514002 7_2:-29119755 Msa1055260:CDS
TGATGATGAGCAAGCAGATT+CGG 0.518577 7_2:+29119901 None:intergenic
AGAAAGTAGAATAATGGAGT+GGG 0.519478 7_2:+29120322 None:intergenic
TTAGTAAAATTACATTGGGA+GGG 0.521925 7_2:+29119410 None:intergenic
GAAGTTAATAGTACTCGTGT+TGG 0.523559 7_2:-29119580 Msa1055260:CDS
ATGCCACACCCTAACAAAGA+AGG 0.529015 7_2:-29117410 Msa1055260:CDS
ATGATGGGATATTGAATGCT+TGG 0.532795 7_2:-29119510 Msa1055260:CDS
TGTTGAGATACAAAGAGAAG+AGG 0.545019 7_2:-29118110 Msa1055260:CDS
TCAACTTGCGAACTTCATAA+CGG 0.545911 7_2:+29118061 None:intergenic
TTTGTACAGGTATTATGGGA+TGG 0.546223 7_2:-29118252 Msa1055260:intron
AAGAAAGTAGAATAATGGAG+TGG 0.548031 7_2:+29120321 None:intergenic
TTATGTTGATGGTTGTGATG+AGG 0.548680 7_2:-29119470 Msa1055260:CDS
TCCGGTGATGGATCAAGGGT+TGG 0.551320 7_2:-29119707 Msa1055260:CDS
GAGGAAGAGGAAGATGAAGA+AGG 0.555436 7_2:+29120084 None:intergenic
TGGAAAGTTCCTGAAGGTGT+TGG 0.558300 7_2:-29118201 Msa1055260:CDS
GTTTGAAGCTTGATCATGAT+GGG 0.563359 7_2:-29119525 Msa1055260:CDS
GCCAGCAACCAGTCAACCAT+AGG 0.564571 7_2:-29117378 Msa1055260:CDS
AGTTTGAAGCTTGATCATGA+TGG 0.572212 7_2:-29119526 Msa1055260:CDS
GACGAAGAAGGAAATGATGG+AGG 0.575278 7_2:-29119602 Msa1055260:CDS
GTGAAGGTGAAGGAAGAAAT+GGG 0.575413 7_2:-29118162 Msa1055260:CDS
CTAACAAAGAAGGGTGGCAG+AGG 0.579542 7_2:-29117400 Msa1055260:CDS
ACCAACCCTTGATCCATCAC+CGG 0.584061 7_2:+29119706 None:intergenic
CAATAACAATGTGAAGGTGA+AGG 0.584908 7_2:-29118172 Msa1055260:CDS
TGGTGAGGAAAGCAATGAGG+AGG 0.586113 7_2:-29119687 Msa1055260:CDS
AGGTGAAGGAAGAAATGGGT+TGG 0.586587 7_2:-29118158 Msa1055260:CDS
GTTACGGGCCGATCTACCTA+TGG 0.587617 7_2:+29117362 None:intergenic
AGAAATAGTACCTTCATCCT+CGG 0.597938 7_2:+29118024 None:intergenic
GAAAGTAGAATAATGGAGTG+GGG 0.599742 7_2:+29120323 None:intergenic
GACGACGACGGAGGAAGAGG+AGG 0.602906 7_2:-29119752 Msa1055260:CDS
ATTGTCAGTGATGAGGTGTC+CGG 0.606087 7_2:-29119725 Msa1055260:CDS
TGCCACACCCTAACAAAGAA+GGG 0.609411 7_2:-29117409 Msa1055260:CDS
TGATGGATCAAGGGTTGGTG+AGG 0.611319 7_2:-29119702 Msa1055260:CDS
AACAAATCAGGAACAGTCTG+AGG 0.616030 7_2:+29119445 None:intergenic
TTGGAAGCTTGGGCAGAGAG+AGG 0.619401 7_2:-29118139 Msa1055260:CDS
GCGTTACTCTTCACATCAGA+CGG 0.631227 7_2:-29119832 Msa1055260:CDS
AGCTAGCAATAACAATGTGA+AGG 0.640407 7_2:-29118178 Msa1055260:CDS
AGGAGTCATTGTCAGTGATG+AGG 0.647629 7_2:-29119732 Msa1055260:CDS
AACACATGGAAAGTTCCTGA+AGG 0.666366 7_2:-29118207 Msa1055260:CDS
GTGATGTTAATGGGAACACA+TGG 0.674682 7_2:-29118221 Msa1055260:CDS
GGTTGGTGAGGAAAGCAATG+AGG 0.677201 7_2:-29119690 Msa1055260:CDS
GGTGTCCGGTGATGGATCAA+GGG 0.677873 7_2:-29119711 Msa1055260:CDS
AGCGGTGATGACGACGACGG+AGG 0.681137 7_2:-29119761 Msa1055260:CDS
CACACCCTAACAAAGAAGGG+TGG 0.723841 7_2:-29117406 Msa1055260:CDS
TTACTCTTCACATCAGACGG+TGG 0.732316 7_2:-29119829 Msa1055260:CDS
AACAGCGGTGATGACGACGA+CGG 0.737423 7_2:-29119764 Msa1055260:CDS
TGAATCGACTACGTTAACAG+CGG 0.787904 7_2:-29119779 Msa1055260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAGTAAAATTACATT+GGG + chr7_2:29118312-29118331 None:intergenic 10.0%
!! AAAAATTAGTAAAATTACAT+TGG + chr7_2:29118313-29118332 None:intergenic 10.0%
!! ATCAATTTAGAAATATATTA+TGG - chr7_2:29119392-29119411 Msa1055260:intron 10.0%
!!! TTTGTTTTTGTTTTTGTTTT+TGG + chr7_2:29117550-29117569 None:intergenic 15.0%
!!! TGATGAACATATATTTTTTT+TGG + chr7_2:29117605-29117624 None:intergenic 15.0%
!!! TTTTATTATTGGTTACTTTT+TGG - chr7_2:29118966-29118985 Msa1055260:intron 15.0%
!! AAAATCAATTTAAACCATTA+TGG + chr7_2:29119241-29119260 None:intergenic 15.0%
!!! ATGGTTTAAATTGATTTTAT+AGG - chr7_2:29119243-29119262 Msa1055260:intron 15.0%
!! AAAAAATTACTTGAAAAGAA+AGG - chr7_2:29119797-29119816 Msa1055260:CDS 15.0%
!!! ATTTTTTCCAATTAATTGAG+TGG - chr7_2:29118521-29118540 Msa1055260:intron 20.0%
!! ACTTGATGCAAATTATAATT+TGG + chr7_2:29118648-29118667 None:intergenic 20.0%
!!! TCAATGATTTGTTTTTAAAC+TGG + chr7_2:29118758-29118777 None:intergenic 20.0%
!! AACCAATAATAAAAAGTTGT+CGG + chr7_2:29118960-29118979 None:intergenic 20.0%
!! TATTATATATCACAACCAAA+CGG + chr7_2:29119084-29119103 None:intergenic 20.0%
! AATGGAAGAAAGTAGAATAA+TGG + chr7_2:29117402-29117421 None:intergenic 25.0%
!!! GTTTTTGTTTTTGTTTTTGG+TGG + chr7_2:29117547-29117566 None:intergenic 25.0%
! TTAGTAAAATTACATTGGGA+GGG + chr7_2:29118308-29118327 None:intergenic 25.0%
! ATTAGTAAAATTACATTGGG+AGG + chr7_2:29118309-29118328 None:intergenic 25.0%
!! TTTCATACATATTTGATTCG+CGG - chr7_2:29118353-29118372 Msa1055260:intron 25.0%
! CACTTTAAATGTGAAGAAAT+AGG - chr7_2:29118550-29118569 Msa1055260:intron 25.0%
! ATGTGAAGAAATAGGAAATT+CGG - chr7_2:29118558-29118577 Msa1055260:intron 25.0%
!! TTTTTAATCAGTTATGAGTG+TGG - chr7_2:29118807-29118826 Msa1055260:intron 25.0%
!! ATTTCTTTTGTGCATGTTTT+TGG - chr7_2:29118904-29118923 Msa1055260:intron 25.0%
!! GAATAGTGATGATTTCATTT+TGG - chr7_2:29118932-29118951 Msa1055260:intron 25.0%
!! ATCTTACATTTAAAACACGA+TGG - chr7_2:29119010-29119029 Msa1055260:intron 25.0%
!!! TTCTTTTACCCTTATTTCAA+TGG - chr7_2:29119056-29119075 Msa1055260:intron 25.0%
! ATTATATATCACAACCAAAC+GGG + chr7_2:29119083-29119102 None:intergenic 25.0%
! ATAATAATTGTGACTCTTGT+TGG - chr7_2:29119098-29119117 Msa1055260:intron 25.0%
!! GATTTTATAGGATTGAGTTA+TGG - chr7_2:29119255-29119274 Msa1055260:intron 25.0%
! TTCAATTTATTGCATCAACT+TGG + chr7_2:29119334-29119353 None:intergenic 25.0%
!! GATACAAGAGAAAATCTTTT+AGG - chr7_2:29119360-29119379 Msa1055260:intron 25.0%
!! TTCATTTGATAGTAACAAGT+GGG + chr7_2:29119419-29119438 None:intergenic 25.0%
!!! TGTGTGTTATTTTGTTTGAA+TGG - chr7_2:29119843-29119862 Msa1055260:CDS 25.0%
!! TGCTTATATTTGAAACTCAA+GGG + chr7_2:29119881-29119900 None:intergenic 25.0%
!! TTGCTTATATTTGAAACTCA+AGG + chr7_2:29119882-29119901 None:intergenic 25.0%
! TTCTCGTTTATATTGTACAA+GGG + chr7_2:29119954-29119973 None:intergenic 25.0%
! TTTCTCGTTTATATTGTACA+AGG + chr7_2:29119955-29119974 None:intergenic 25.0%
!! CAACTTTTGAACAATTTTCT+TGG - chr7_2:29120000-29120019 Msa1055260:CDS 25.0%
! AGAAAGTAGAATAATGGAGT+GGG + chr7_2:29117396-29117415 None:intergenic 30.0%
! AAGAAAGTAGAATAATGGAG+TGG + chr7_2:29117397-29117416 None:intergenic 30.0%
! TAGCTTTTCTGATGAGAAAA+TGG + chr7_2:29117420-29117439 None:intergenic 30.0%
AAACGTAGACTAAGATACTT+TGG + chr7_2:29117697-29117716 None:intergenic 30.0%
!!! TTGTTGTTGTTGCTGTTTTT+GGG + chr7_2:29117754-29117773 None:intergenic 30.0%
AAAGGTTCTCTTTATGTTGA+TGG - chr7_2:29118234-29118253 Msa1055260:CDS 30.0%
ATTGAACCATTGAACAAATC+AGG + chr7_2:29118285-29118304 None:intergenic 30.0%
GGCTTAAATCATGAACTAAA+TGG + chr7_2:29118627-29118646 None:intergenic 30.0%
! CACCGACAACTTTTTATTAT+TGG - chr7_2:29118955-29118974 Msa1055260:intron 30.0%
!!! TTATTGGTTACTTTTTGGCA+AGG - chr7_2:29118971-29118990 Msa1055260:intron 30.0%
!!! TATTGGTTACTTTTTGGCAA+GGG - chr7_2:29118972-29118991 Msa1055260:intron 30.0%
TTATATATCACAACCAAACG+GGG + chr7_2:29119082-29119101 None:intergenic 30.0%
TTTATGTGTGACATCCATAA+TGG - chr7_2:29119224-29119243 Msa1055260:intron 30.0%
!!! ATCTCTCAATTATTTTGACG+AGG - chr7_2:29119303-29119322 Msa1055260:intron 30.0%
! ACAAGAGAAAATCTTTTAGG+TGG - chr7_2:29119363-29119382 Msa1055260:intron 30.0%
! CTTCATTTGATAGTAACAAG+TGG + chr7_2:29119420-29119439 None:intergenic 30.0%
!!! AGTGTTTTGATGAAGCTATT+TGG - chr7_2:29119438-29119457 Msa1055260:CDS 30.0%
AAGCTATTTGGTATTTGTAC+AGG - chr7_2:29119450-29119469 Msa1055260:CDS 30.0%
TGGTATTTGTACAGGTATTA+TGG - chr7_2:29119458-29119477 Msa1055260:CDS 30.0%
GGTATTTGTACAGGTATTAT+GGG - chr7_2:29119459-29119478 Msa1055260:CDS 30.0%
ACTTTCTTCTCTCTTCTTAT+TGG + chr7_2:29120089-29120108 None:intergenic 30.0%
AATACACCCAAATAAAACGA+AGG - chr7_2:29120160-29120179 Msa1055260:CDS 30.0%
TTTCAGATAGTAGAGTTTCT+CGG + chr7_2:29120274-29120293 None:intergenic 30.0%
! GAAAGTAGAATAATGGAGTG+GGG + chr7_2:29117395-29117414 None:intergenic 35.0%
GCTTGAAACTTGAAAGAAAC+TGG - chr7_2:29117453-29117472 Msa1055260:CDS 35.0%
!! TGATTTTAGTGAAGAGGAAG+AGG + chr7_2:29117647-29117666 None:intergenic 35.0%
!! TCTACGTGATTTTAGTGAAG+AGG + chr7_2:29117653-29117672 None:intergenic 35.0%
!!! GTTGTTGTTGTTGCTGTTTT+TGG + chr7_2:29117755-29117774 None:intergenic 35.0%
GAAGTTAATAGTACTCGTGT+TGG - chr7_2:29118135-29118154 Msa1055260:CDS 35.0%
!!! TTTGAAACGACGTCGTTTTT+TGG - chr7_2:29118159-29118178 Msa1055260:CDS 35.0%
!!! TTGAAACGACGTCGTTTTTT+GGG - chr7_2:29118160-29118179 Msa1055260:CDS 35.0%
! AGTTTGAAGCTTGATCATGA+TGG - chr7_2:29118189-29118208 Msa1055260:CDS 35.0%
! GTTTGAAGCTTGATCATGAT+GGG - chr7_2:29118190-29118209 Msa1055260:CDS 35.0%
! ATGATGGGATATTGAATGCT+TGG - chr7_2:29118205-29118224 Msa1055260:CDS 35.0%
TTGAATGCTTGGTCTGATAA+AGG - chr7_2:29118216-29118235 Msa1055260:CDS 35.0%
!! TTATGTTGATGGTTGTGATG+AGG - chr7_2:29118245-29118264 Msa1055260:CDS 35.0%
!! ACTGTTCCTGATTTGTTCAA+TGG - chr7_2:29118276-29118295 Msa1055260:intron 35.0%
! AGTGATTTTGCCAACTTCAA+AGG + chr7_2:29118456-29118475 None:intergenic 35.0%
GCTTGAAGTTGGCAAAATTA+TGG + chr7_2:29118485-29118504 None:intergenic 35.0%
GAACTAAATGGTAAGCTACA+AGG + chr7_2:29118615-29118634 None:intergenic 35.0%
!!! CTTTTGTGCATGTTTTTGGA+TGG - chr7_2:29118908-29118927 Msa1055260:intron 35.0%
!!! ATTGGTTACTTTTTGGCAAG+GGG - chr7_2:29118973-29118992 Msa1055260:intron 35.0%
ATGTAAGATCCTAATCAAGC+AGG + chr7_2:29118999-29119018 None:intergenic 35.0%
ATAATTGTGACTCTTGTTGG+AGG - chr7_2:29119101-29119120 Msa1055260:intron 35.0%
TTTGTACAGGTATTATGGGA+TGG - chr7_2:29119463-29119482 Msa1055260:CDS 35.0%
AGGTATTATGGGATGGTTAT+GGG - chr7_2:29119470-29119489 Msa1055260:CDS 35.0%
GTTATGGGTGTGATGTTAAT+GGG - chr7_2:29119485-29119504 Msa1055260:CDS 35.0%
AGCTAGCAATAACAATGTGA+AGG - chr7_2:29119537-29119556 Msa1055260:CDS 35.0%
CAATAACAATGTGAAGGTGA+AGG - chr7_2:29119543-29119562 Msa1055260:CDS 35.0%
TGTTGAGATACAAAGAGAAG+AGG - chr7_2:29119605-29119624 Msa1055260:CDS 35.0%
TCAACTTGCGAACTTCATAA+CGG + chr7_2:29119657-29119676 None:intergenic 35.0%
! GCAAGTTGAATGCTGAAAAA+CGG - chr7_2:29119668-29119687 Msa1055260:CDS 35.0%
AGAAATAGTACCTTCATCCT+CGG + chr7_2:29119694-29119713 None:intergenic 35.0%
ACCATGCATTTAGACATATC+TGG - chr7_2:29119723-29119742 Msa1055260:CDS 35.0%
ACCAGATATGTCTAAATGCA+TGG + chr7_2:29119727-29119746 None:intergenic 35.0%
TGTCTCAAAAGTTGTCACAA+TGG - chr7_2:29120109-29120128 Msa1055260:CDS 35.0%
!!! TGTTGTTGCTGTTTTTGGGT+TGG + chr7_2:29117750-29117769 None:intergenic 40.0%
! TGATGATGAGCAAGCAGATT+CGG + chr7_2:29117817-29117836 None:intergenic 40.0%
TGAATCGACTACGTTAACAG+CGG - chr7_2:29117936-29117955 Msa1055260:intron 40.0%
ATGAAGAGAGTGAAGAGAGA+TGG - chr7_2:29118064-29118083 Msa1055260:CDS 40.0%
TGAAGAGAGTGAAGAGAGAT+GGG - chr7_2:29118065-29118084 Msa1055260:CDS 40.0%
AGTTGTTGAAGAGACGAAGA+AGG - chr7_2:29118101-29118120 Msa1055260:CDS 40.0%
AGAGACGAAGAAGGAAATGA+TGG - chr7_2:29118110-29118129 Msa1055260:CDS 40.0%
AACAAATCAGGAACAGTCTG+AGG + chr7_2:29118273-29118292 None:intergenic 40.0%
TTGCCAACTTCAAAGCCAAT+CGG + chr7_2:29118411-29118430 None:intergenic 40.0%
! ATTTTGCCAACTTCAAGCTG+AGG - chr7_2:29118487-29118506 Msa1055260:intron 40.0%
GTGTGAGCCACTCAATTAAT+TGG + chr7_2:29118531-29118550 None:intergenic 40.0%
GAAATTCGGAGCTTGAATCT+TGG - chr7_2:29118572-29118591 Msa1055260:intron 40.0%
!! TTGTGCATGTGACTGATTTG+TGG - chr7_2:29118869-29118888 Msa1055260:intron 40.0%
AAACGGGGCCATTGAAATAA+GGG + chr7_2:29119067-29119086 None:intergenic 40.0%
GATTGAGTTATGGTGTGACA+AGG - chr7_2:29119265-29119284 Msa1055260:intron 40.0%
CAGGTATTATGGGATGGTTA+TGG - chr7_2:29119469-29119488 Msa1055260:CDS 40.0%
GGTTATGGGTGTGATGTTAA+TGG - chr7_2:29119484-29119503 Msa1055260:CDS 40.0%
GTGATGTTAATGGGAACACA+TGG - chr7_2:29119494-29119513 Msa1055260:CDS 40.0%
AACACATGGAAAGTTCCTGA+AGG - chr7_2:29119508-29119527 Msa1055260:CDS 40.0%
TGTGAAGGTGAAGGAAGAAA+TGG - chr7_2:29119552-29119571 Msa1055260:CDS 40.0%
GTGAAGGTGAAGGAAGAAAT+GGG - chr7_2:29119553-29119572 Msa1055260:CDS 40.0%
!! AAGAAATGGGTTGGAAGCTT+GGG - chr7_2:29119566-29119585 Msa1055260:CDS 40.0%
!!! GTCCTGCCTTCGTTTTATTT+GGG + chr7_2:29120169-29120188 None:intergenic 40.0%
!! CTTCTTGGTGTTTGCTTGTT+TGG + chr7_2:29120191-29120210 None:intergenic 40.0%
CAAACAAGCAAACACCAAGA+AGG - chr7_2:29120189-29120208 Msa1055260:CDS 40.0%
ATTGAGTGTTCTTGCCTTCT+TGG + chr7_2:29120206-29120225 None:intergenic 40.0%
GAGGAAGAGGAAGATGAAGA+AGG + chr7_2:29117634-29117653 None:intergenic 45.0%
TTCTTCGTGCATGTCGTGTT+CGG + chr7_2:29117854-29117873 None:intergenic 45.0%
GCGTTACTCTTCACATCAGA+CGG - chr7_2:29117883-29117902 Msa1055260:intron 45.0%
TTACTCTTCACATCAGACGG+TGG - chr7_2:29117886-29117905 Msa1055260:intron 45.0%
AGGAGTCATTGTCAGTGATG+AGG - chr7_2:29117983-29118002 Msa1055260:intron 45.0%
! ATTGTCAGTGATGAGGTGTC+CGG - chr7_2:29117990-29118009 Msa1055260:intron 45.0%
GACGAAGAAGGAAATGATGG+AGG - chr7_2:29118113-29118132 Msa1055260:CDS 45.0%
CAGTGTTATCGTGATCCGAT+TGG - chr7_2:29118393-29118412 Msa1055260:intron 45.0%
!! GATCCGATTGGCTTTGAAGT+TGG - chr7_2:29118405-29118424 Msa1055260:intron 45.0%
!! GCGATGATTGCCTTTGAAGT+TGG - chr7_2:29118443-29118462 Msa1055260:intron 45.0%
TCATCTCCTCAGCTTGAAGT+TGG + chr7_2:29118496-29118515 None:intergenic 45.0%
CAAACGGGGCCATTGAAATA+AGG + chr7_2:29119068-29119087 None:intergenic 45.0%
CTTATTTCAATGGCCCCGTT+TGG - chr7_2:29119066-29119085 Msa1055260:intron 45.0%
! TGGAAAGTTCCTGAAGGTGT+TGG - chr7_2:29119514-29119533 Msa1055260:CDS 45.0%
AGGTGAAGGAAGAAATGGGT+TGG - chr7_2:29119557-29119576 Msa1055260:CDS 45.0%
!! GAAGAAATGGGTTGGAAGCT+TGG - chr7_2:29119565-29119584 Msa1055260:CDS 45.0%
CACCCAAATAAAACGAAGGC+AGG - chr7_2:29120164-29120183 Msa1055260:CDS 45.0%
!! GGTCCTGCCTTCGTTTTATT+TGG + chr7_2:29120170-29120189 None:intergenic 45.0%
GTTACAGGTCTGAGGATTTG+TGG + chr7_2:29120250-29120269 None:intergenic 45.0%
GTAGAGTTTCTCGGAGTTAC+AGG + chr7_2:29120265-29120284 None:intergenic 45.0%
ATGCCACACCCTAACAAAGA+AGG - chr7_2:29120305-29120324 Msa1055260:five_prime_UTR 45.0%
TGCCACACCCTAACAAAGAA+GGG - chr7_2:29120306-29120325 Msa1055260:five_prime_UTR 45.0%
TCTGCCACCCTTCTTTGTTA+GGG + chr7_2:29120316-29120335 None:intergenic 45.0%
ACCAACCCTTGATCCATCAC+CGG + chr7_2:29118012-29118031 None:intergenic 50.0%
!! TGATGGATCAAGGGTTGGTG+AGG - chr7_2:29118013-29118032 Msa1055260:intron 50.0%
!! GGTTGGTGAGGAAAGCAATG+AGG - chr7_2:29118025-29118044 Msa1055260:intron 50.0%
TGGTGAGGAAAGCAATGAGG+AGG - chr7_2:29118028-29118047 Msa1055260:intron 50.0%
GGAAAGCAATGAGGAGGAAG+AGG - chr7_2:29118034-29118053 Msa1055260:intron 50.0%
TTGCTAGCTCCAACACCTTC+AGG + chr7_2:29119526-29119545 None:intergenic 50.0%
TGAATGCTGAAAAACGGCCG+AGG - chr7_2:29119674-29119693 Msa1055260:CDS 50.0%
TGAAAAACGGCCGAGGATGA+AGG - chr7_2:29119681-29119700 Msa1055260:CDS 50.0%
TTCTCGGAGTTACAGGTCTG+AGG + chr7_2:29120258-29120277 None:intergenic 50.0%
CACCCTTCTTTGTTAGGGTG+TGG + chr7_2:29120311-29120330 None:intergenic 50.0%
CACACCCTAACAAAGAAGGG+TGG - chr7_2:29120309-29120328 Msa1055260:five_prime_UTR 50.0%
CTCTGCCACCCTTCTTTGTT+AGG + chr7_2:29120317-29120336 None:intergenic 50.0%
CTAACAAAGAAGGGTGGCAG+AGG - chr7_2:29120315-29120334 Msa1055260:five_prime_UTR 50.0%
! ACCTATGGTTGACTGGTTGC+TGG + chr7_2:29120341-29120360 None:intergenic 50.0%
GACGGTGGAGCAACGCTAAA+CGG - chr7_2:29117901-29117920 Msa1055260:intron 55.0%
! AACAGCGGTGATGACGACGA+CGG - chr7_2:29117951-29117970 Msa1055260:intron 55.0%
! AGTGATGAGGTGTCCGGTGA+TGG - chr7_2:29117996-29118015 Msa1055260:intron 55.0%
!! AGGTGTCCGGTGATGGATCA+AGG - chr7_2:29118003-29118022 Msa1055260:intron 55.0%
!! GGTGTCCGGTGATGGATCAA+GGG - chr7_2:29118004-29118023 Msa1055260:intron 55.0%
!! TCCGGTGATGGATCAAGGGT+TGG - chr7_2:29118008-29118027 Msa1055260:intron 55.0%
TTGGAAGCTTGGGCAGAGAG+AGG - chr7_2:29119576-29119595 Msa1055260:CDS 55.0%
GCCAGCAACCAGTCAACCAT+AGG - chr7_2:29120337-29120356 Msa1055260:five_prime_UTR 55.0%
GATGACGACGACGGAGGAAG+AGG - chr7_2:29117960-29117979 Msa1055260:intron 60.0%
GGCAAGGGGCCTGCTTGATT+AGG - chr7_2:29118987-29119006 Msa1055260:intron 60.0%
! AGCGGTGATGACGACGACGG+AGG - chr7_2:29117954-29117973 Msa1055260:intron 65.0%
GACGACGACGGAGGAAGAGG+AGG - chr7_2:29117963-29117982 Msa1055260:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 29117375 29120362 29117375 ID=Msa1055260;Name=Msa1055260
chr7_2 mRNA 29117375 29120362 29117375 ID=Msa1055260-mRNA-1;Parent=Msa1055260;Name=Msa1055260-mRNA-1;_AED=0.16;_eAED=0.16;_QI=139|0.5|0.66|0.66|1|1|3|0|377
chr7_2 exon 29117375 29117476 29117375 ID=Msa1055260-mRNA-1:exon:6037;Parent=Msa1055260-mRNA-1
chr7_2 exon 29118035 29118265 29118035 ID=Msa1055260-mRNA-1:exon:6036;Parent=Msa1055260-mRNA-1
chr7_2 exon 29119423 29120362 29119423 ID=Msa1055260-mRNA-1:exon:6035;Parent=Msa1055260-mRNA-1
chr7_2 five_prime_UTR 29120224 29120362 29120224 ID=Msa1055260-mRNA-1:five_prime_utr;Parent=Msa1055260-mRNA-1
chr7_2 CDS 29119423 29120223 29119423 ID=Msa1055260-mRNA-1:cds;Parent=Msa1055260-mRNA-1
chr7_2 CDS 29118035 29118265 29118035 ID=Msa1055260-mRNA-1:cds;Parent=Msa1055260-mRNA-1
chr7_2 CDS 29117375 29117476 29117375 ID=Msa1055260-mRNA-1:cds;Parent=Msa1055260-mRNA-1
Gene Sequence

>Msa1055260

ATGTGCAACAAGAATAGTAGTACTCTTTCACCACCAAAAACAAAAACAAAAACAAAATCTATTACTATGAAGAAGAGAAAGAGACAAACCAAAAAAAATATATGTTCATCAATTTCACCTTCTTCATCTTCCTCTTCCTCTTCACTAAAATCACGTAGAAACAAAACAAAAAGAAAAAAACCAAAGTATCTTAGTCTACGTTTACAGCTCTCAAAAACAGAAAAAAACAAAGACCAACCCAAAAACAGCAACAACAACAACAAAAAAACACAAAAACAAGAACAACAAGAACAACAACAACCGAATCTGCTTGCTCATCATCATCATCATCACGATACCGAACACGACATGCACGAAGAAAACAATGTAGCGTTACTCTTCACATCAGACGGTGGAGCAACGCTAAACGGTCTTCTAGAAAATGAATCGACTACGTTAACAGCGGTGATGACGACGACGGAGGAAGAGGAGGAGTCATTGTCAGTGATGAGGTGTCCGGTGATGGATCAAGGGTTGGTGAGGAAAGCAATGAGGAGGAAGAGGAATGATCATGAAGAGAGTGAAGAGAGATGGGTGAGTTATTCAGAAGTTGTTGAAGAGACGAAGAAGGAAATGATGGAGGAAGTTAATAGTACTCGTGTTGGATTTGAAACGACGTCGTTTTTTGGGTCTTTGAGTTTGAAGCTTGATCATGATGGGATATTGAATGCTTGGTCTGATAAAGGTTCTCTTTATGTTGATGGTTGTGATGAGGCTCCTCAGACTGTTCCTGATTTGTTCAATGGTTCAATCCCTCCCAATGTATTATGGGATGGTTATGGGTGTGATGTTAATGGGAACACATGGAAAGTTCCTGAAGGTGTTGGAGCTAGCAATAACAATGTGAAGGTGAAGGAAGAAATGGGTTGGAAGCTTGGGCAGAGAGAGGCAAGTTTGTTGAGATACAAAGAGAAGAGGCAAAGCAGACTCTTTGCTAAGAGAATCCGTTATGAAGTTCGCAAGTTGAATGCTGAAAAACGGCCGAGGATGAAGACCTGTAACTCCGAGAAACTCTACTATCTGAAAAGCGAGAGAAAATGCCACACCCTAACAAAGAAGGGTGGCAGAGGCCAGCAACCAGTCAACCATAGGTAG

Protein sequence

>Msa1055260

MCNKNSSTLSPPKTKTKTKSITMKKRKRQTKKNICSSISPSSSSSSSSLKSRRNKTKRKKPKYLSLRLQLSKTEKNKDQPKNSNNNNKKTQKQEQQEQQQPNLLAHHHHHHDTEHDMHEENNVALLFTSDGGATLNGLLENESTTLTAVMTTTEEEEESLSVMRCPVMDQGLVRKAMRRKRNDHEESEERWVSYSEVVEETKKEMMEEVNSTRVGFETTSFFGSLSLKLDHDGILNAWSDKGSLYVDGCDEAPQTVPDLFNGSIPPNVLWDGYGCDVNGNTWKVPEGVGASNNNVKVKEEMGWKLGQREASLLRYKEKRQSRLFAKRIRYEVRKLNAEKRPRMKTCNSEKLYYLKSERKCHTLTKKGGRGQQPVNHR*