AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0735340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0735340 MtrunA17_Chr5g0432451 94.828 232 7 2 8 239 4 230 2.70e-156 432
Msa0735340 MtrunA17_Chr3g0129071 74.839 155 32 3 8 157 4 156 6.26e-79 237
Msa0735340 MtrunA17_Chr5g0438091 56.579 228 57 6 12 238 9 195 2.17e-74 224
Msa0735340 MtrunA17_Chr4g0043421 62.097 124 46 1 47 169 14 137 2.50e-51 164
Msa0735340 MtrunA17_Chr2g0311601 62.185 119 45 0 40 158 5 123 7.24e-51 163
Msa0735340 MtrunA17_Chr5g0437571 68.932 103 32 0 47 149 5 107 4.63e-49 159
Msa0735340 MtrunA17_Chr3g0114061 66.038 106 36 0 44 149 4 109 5.06e-48 155
Msa0735340 MtrunA17_Chr4g0058651 55.882 136 55 1 47 182 10 140 3.12e-46 152
Msa0735340 MtrunA17_Chr3g0106101 53.125 128 58 1 47 174 6 131 9.57e-46 150
Msa0735340 MtrunA17_Chr3g0117121 62.385 109 41 0 47 155 9 117 1.36e-45 150
Msa0735340 MtrunA17_Chr7g0227511 64.762 105 37 0 47 151 10 114 2.18e-45 149
Msa0735340 MtrunA17_Chr6g0449641 56.637 113 49 0 47 159 8 120 1.22e-43 144
Msa0735340 MtrunA17_Chr4g0030001 56.557 122 51 2 36 155 11 132 1.35e-43 145
Msa0735340 MtrunA17_Chr3g0115431 54.918 122 47 1 47 168 8 121 7.80e-43 144
Msa0735340 MtrunA17_Chr1g0200201 51.852 135 62 2 49 180 73 207 4.95e-42 142
Msa0735340 MtrunA17_Chr6g0449651 55.357 112 50 0 47 158 66 177 9.34e-42 141
Msa0735340 MtrunA17_Chr5g0402611 60.000 105 42 0 47 151 7 111 8.77e-41 142
Msa0735340 MtrunA17_Chr7g0245871 63.725 102 36 1 48 148 27 128 1.34e-40 139
Msa0735340 MtrunA17_Chr3g0113891 64.516 93 33 0 49 141 15 107 3.49e-40 136
Msa0735340 MtrunA17_Chr7g0260971 56.250 112 48 1 38 148 4 115 1.13e-39 136
Msa0735340 MtrunA17_Chr5g0437401 58.824 102 42 0 49 150 12 113 2.45e-39 134
Msa0735340 MtrunA17_Chr3g0097221 56.604 106 46 0 47 152 6 111 9.01e-39 136
Msa0735340 MtrunA17_Chr8g0353981 58.491 106 44 0 47 152 6 111 4.32e-38 132
Msa0735340 MtrunA17_Chr7g0225111 51.923 104 50 0 49 152 6 109 2.45e-36 124
Msa0735340 MtrunA17_Chr1g0184281 57.426 101 42 1 48 147 15 115 1.59e-35 125
Msa0735340 MtrunA17_Chr6g0460951 52.778 108 50 1 46 152 38 145 4.72e-35 124
Msa0735340 MtrunA17_Chr8g0351721 54.386 114 51 1 36 148 6 119 5.00e-35 124
Msa0735340 MtrunA17_Chr8g0351701 57.547 106 44 1 48 152 23 128 8.96e-35 124
Msa0735340 MtrunA17_Chr1g0184271 41.573 178 90 5 48 223 12 177 1.26e-33 121
Msa0735340 MtrunA17_Chr5g0444351 40.288 139 81 1 49 185 6 144 3.72e-33 117
Msa0735340 MtrunA17_Chr7g0261031 55.340 103 43 2 47 147 7 108 2.51e-32 117
Msa0735340 MtrunA17_Chr8g0374601 46.087 115 62 0 46 160 24 138 7.78e-32 117
Msa0735340 MtrunA17_Chr5g0435641 54.167 96 43 1 47 141 6 101 4.94e-31 113
Msa0735340 MtrunA17_Chr8g0374581 48.598 107 54 1 46 151 6 112 1.49e-28 107
Msa0735340 MtrunA17_Chr8g0374591 43.925 107 60 0 45 151 5 111 4.94e-28 103
Msa0735340 MtrunA17_Chr7g0245861 50.485 103 42 3 35 134 5 101 3.99e-26 99.0
Msa0735340 MtrunA17_Chr6g0460941 47.191 89 46 1 48 135 7 95 3.05e-25 95.5
Msa0735340 MtrunA17_Chr4g0059901 43.269 104 59 0 45 148 7 110 4.70e-25 99.8
Msa0735340 MtrunA17_Chr6g0452691 35.772 123 78 1 49 170 10 132 6.23e-24 94.7
Msa0735340 MtrunA17_Chr6g0452671 38.235 102 63 0 44 145 7 108 3.29e-23 93.2
Msa0735340 MtrunA17_Chr6g0452661 38.053 113 65 3 43 151 1 112 5.57e-23 93.6
Msa0735340 MtrunA17_Chr4g0040831 38.384 99 61 0 49 147 16 114 1.24e-21 89.0
Msa0735340 MtrunA17_Chr2g0330201 40.000 105 61 2 45 148 16 119 2.33e-21 90.5
Msa0735340 MtrunA17_Chr8g0342351 36.697 109 67 2 45 152 9 116 2.07e-20 87.0
Msa0735340 MtrunA17_Chr5g0439111 37.168 113 66 3 43 151 1 112 9.09e-20 84.7
Msa0735340 MtrunA17_Chr4g0055441 37.500 104 63 2 49 151 3 105 5.94e-19 80.9
Msa0735340 MtrunA17_Chr2g0326041 48.718 78 36 1 20 93 1 78 2.87e-18 77.0
Msa0735340 MtrunA17_Chr2g0326051 54.688 64 29 0 93 156 5 68 1.61e-17 75.9
Msa0735340 MtrunA17_Chr4g0046201 32.955 88 59 0 47 134 5 92 3.26e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0735340 AT2G30340.2 69.811 159 42 3 10 163 11 168 4.85e-74 226
Msa0735340 AT2G30340.1 69.811 159 42 3 10 163 10 167 5.36e-74 226
Msa0735340 AT2G40470.1 67.241 174 50 4 8 176 4 175 2.44e-68 210
Msa0735340 AT2G40470.2 72.973 148 36 2 31 176 5 150 5.49e-65 201
Msa0735340 AT2G30130.1 66.990 103 34 0 47 149 7 109 1.10e-46 154
Msa0735340 AT1G31320.1 64.602 113 40 0 47 159 12 124 1.86e-46 152
Msa0735340 AT1G07900.1 57.143 112 48 0 45 156 30 141 1.93e-44 148
Msa0735340 AT3G27650.1 51.020 147 66 2 5 151 2 142 3.36e-44 146
Msa0735340 AT5G63090.4 52.817 142 60 1 47 188 10 144 8.50e-44 146
Msa0735340 AT5G63090.3 52.817 142 60 1 47 188 10 144 8.50e-44 146
Msa0735340 AT5G63090.2 52.817 142 60 1 47 188 10 144 8.50e-44 146
Msa0735340 AT5G63090.1 52.817 142 60 1 47 188 10 144 8.50e-44 146
Msa0735340 AT2G28500.1 60.952 105 41 0 45 149 52 156 1.11e-43 147
Msa0735340 AT1G16530.1 57.798 109 45 1 45 152 11 119 2.03e-42 142
Msa0735340 AT5G66870.1 60.000 105 42 0 47 151 6 110 8.10e-41 142
Msa0735340 AT2G23660.2 58.095 105 44 0 47 151 4 108 1.30e-40 142
Msa0735340 AT2G23660.3 58.095 105 44 0 47 151 4 108 1.30e-40 142
Msa0735340 AT2G23660.1 58.095 105 44 0 47 151 4 108 1.30e-40 142
Msa0735340 AT1G65620.1 62.963 108 40 0 45 152 6 113 6.25e-40 137
Msa0735340 AT1G65620.4 62.963 108 40 0 45 152 6 113 6.25e-40 137
Msa0735340 AT1G65620.3 62.963 108 40 0 45 152 6 113 6.25e-40 137
Msa0735340 AT1G65620.5 62.963 108 40 0 45 152 6 113 6.25e-40 137
Msa0735340 AT1G65620.2 62.963 108 40 0 45 152 6 113 6.25e-40 137
Msa0735340 AT3G11090.1 61.165 103 40 0 49 151 12 114 1.12e-39 135
Msa0735340 AT4G00210.1 56.757 111 47 1 39 148 2 112 1.25e-37 131
Msa0735340 AT2G42430.1 52.174 115 54 1 39 152 6 120 4.72e-37 130
Msa0735340 AT3G26660.1 54.000 100 46 0 49 148 6 105 8.13e-37 126
Msa0735340 AT3G26620.1 54.000 100 46 0 49 148 6 105 1.01e-36 126
Msa0735340 AT3G03760.1 56.075 107 46 1 47 152 50 156 1.58e-35 127
Msa0735340 AT5G06080.1 52.778 108 50 1 47 153 6 113 9.12e-34 120
Msa0735340 AT3G58190.1 52.381 126 48 4 48 171 11 126 1.07e-33 121
Msa0735340 AT2G31310.1 54.902 102 45 1 47 147 6 107 1.58e-33 120
Msa0735340 AT4G00220.1 60.606 99 38 1 51 148 20 118 6.38e-33 119
Msa0735340 AT2G45420.1 55.556 99 43 1 51 148 40 138 1.09e-31 117
Msa0735340 AT2G45410.1 55.556 99 43 1 51 148 19 117 4.98e-31 113
Msa0735340 AT2G42440.1 52.427 103 46 2 47 147 6 107 1.02e-30 114
Msa0735340 AT3G50510.1 45.714 105 57 0 47 151 11 115 1.13e-27 105
Msa0735340 AT3G50510.2 45.714 105 57 0 47 151 11 115 1.13e-27 105
Msa0735340 AT3G47870.1 39.496 119 65 1 34 152 29 140 3.88e-25 101
Msa0735340 AT5G35900.1 37.255 102 64 0 47 148 4 105 1.16e-21 89.7
Msa0735340 AT1G72980.1 37.500 104 65 0 45 148 10 113 1.32e-20 87.0
Msa0735340 AT3G13850.1 35.849 106 68 0 49 154 37 142 3.24e-20 87.0
Msa0735340 AT1G06280.1 39.362 94 57 0 49 142 25 118 5.94e-19 82.4
Msa0735340 AT4G22700.1 36.190 105 63 3 49 151 6 108 3.28e-15 72.0
Msa0735340 AT2G19820.1 33.708 89 58 1 48 135 12 100 8.12e-14 66.6
Msa0735340 AT5G15060.1 40.260 77 42 2 46 119 15 90 1.40e-11 60.8

Find 33 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAACTTATTCACAAATTA+TGG 0.116130 5_1:-50553456 Msa0735340:CDS
AGATTAAGAGATCCTGTTTA+TGG 0.136497 5_1:-50552856 Msa0735340:CDS
ACAAGGGGTTACTGTGTTTA+AGG 0.163285 5_1:+50553397 None:intergenic
CATCTTTGTGGTCCAACTTC+TGG 0.184756 5_1:-50553425 Msa0735340:CDS
GCATCTGCTCTTTGTCCTTC+AGG 0.259282 5_1:+50552910 None:intergenic
AAATAGACCTAAACAAAATA+TGG 0.270578 5_1:+50552493 None:intergenic
CAATGTCTCTAAATTGCTAT+TGG 0.302262 5_1:-50553261 Msa0735340:intron
CCTTGTGAATTTGCACTTGT+AGG 0.310303 5_1:+50552700 None:intergenic
AAACAATCAACAAGCATGTT+TGG 0.327582 5_1:-50553732 None:intergenic
ATCTTTGTGGTCCAACTTCT+GGG 0.329375 5_1:-50553424 Msa0735340:CDS
GTAGTTCTGCTTGTAAAGAT+TGG 0.370016 5_1:+50552797 None:intergenic
AATTTACCTGTCTCTGTCTC+TGG 0.409172 5_1:+50553705 None:intergenic
GCACCCATGCATCCATAAAC+AGG 0.433076 5_1:+50552844 None:intergenic
GAAACTTATTCACAAATTAT+GGG 0.443359 5_1:-50553455 Msa0735340:CDS
TTTAAGGTTGTCCCAGAAGT+TGG 0.446561 5_1:+50553413 None:intergenic
ATGGGAAGGAAGCATCTTTG+TGG 0.514140 5_1:-50553437 Msa0735340:CDS
GGAGCTAAAGTCGTAGGAAG+AGG 0.531182 5_1:+50552661 None:intergenic
GGATGTCCAGAGACAGAGAC+AGG 0.560818 5_1:-50553711 Msa0735340:intron
AAAGTCGTAGGAAGAGGAAG+AGG 0.563824 5_1:+50552667 None:intergenic
AAGACGAAGACAACGACGAA+AGG 0.564521 5_1:+50552584 None:intergenic
AATAGCTTACATGCAGCACA+AGG 0.568241 5_1:+50553380 None:intergenic
CTTATTCACAAATTATGGGA+AGG 0.570179 5_1:-50553451 Msa0735340:CDS
CCTAAAACAACAATGAGTCA+TGG 0.572377 5_1:-50552538 Msa0735340:CDS
AGATCCTGTTTATGGATGCA+TGG 0.578296 5_1:-50552848 Msa0735340:CDS
GACGGAGGAGCTAAAGTCGT+AGG 0.582427 5_1:+50552655 None:intergenic
GGCGGAGGAGGAGCTAGAGA+CGG 0.614912 5_1:+50552637 None:intergenic
AGCAGATGCAGCAAATAGCA+TGG 0.620064 5_1:-50552896 Msa0735340:CDS
TAGCTTACATGCAGCACAAG+GGG 0.625764 5_1:+50553382 None:intergenic
GGAGGAGGAGCTAGAGACGG+AGG 0.632217 5_1:+50552640 None:intergenic
GATCCTGTTTATGGATGCAT+GGG 0.637525 5_1:-50552847 Msa0735340:CDS
CCTACAAGTGCAAATTCACA+AGG 0.642769 5_1:-50552700 Msa0735340:CDS
ATTGAGAAGAAGATGTGCTG+AGG 0.667195 5_1:-50553360 Msa0735340:CDS
ATAGCTTACATGCAGCACAA+GGG 0.685250 5_1:+50553381 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATAGTTATTACTTA+TGG + chr5_1:50553254-50553273 None:intergenic 10.0%
!! AAATAAATAGTTATTACTTA+TGG + chr5_1:50553254-50553273 None:intergenic 10.0%
!! ATAATATATATTTCTCAACA+AGG - chr5_1:50552624-50552643 Msa0735340:CDS 15.0%
!! AGTTTAATAGTTATTACTTA+TGG + chr5_1:50553225-50553244 None:intergenic 15.0%
!!! TTTTAAATCTATTTTTTAGG+AGG - chr5_1:50553283-50553302 Msa0735340:CDS 15.0%
!! ATAATATATATTTCTCAACA+AGG - chr5_1:50552624-50552643 Msa0735340:CDS 15.0%
!! AGTTTAATAGTTATTACTTA+TGG + chr5_1:50553225-50553244 None:intergenic 15.0%
!!! TTTTAAATCTATTTTTTAGG+AGG - chr5_1:50553283-50553302 Msa0735340:CDS 15.0%
!! TATTTCATCTAATCTTTCTT+TGG + chr5_1:50552722-50552741 None:intergenic 20.0%
!! AGAAACTTATTCACAAATTA+TGG - chr5_1:50552762-50552781 Msa0735340:CDS 20.0%
!! GAAACTTATTCACAAATTAT+GGG - chr5_1:50552763-50552782 Msa0735340:CDS 20.0%
!! ACTAATCTAACGATTAAAAT+TGG - chr5_1:50553155-50553174 Msa0735340:intron 20.0%
!! TATTTCATCTAATCTTTCTT+TGG + chr5_1:50552722-50552741 None:intergenic 20.0%
!! AGAAACTTATTCACAAATTA+TGG - chr5_1:50552762-50552781 Msa0735340:CDS 20.0%
!! GAAACTTATTCACAAATTAT+GGG - chr5_1:50552763-50552782 Msa0735340:CDS 20.0%
!! ACTAATCTAACGATTAAAAT+TGG - chr5_1:50553155-50553174 Msa0735340:intron 20.0%
! TATATTTCTCAACAAGGTTA+AGG - chr5_1:50552630-50552649 Msa0735340:CDS 25.0%
! TTTAACATCCTCTTCAAAAA+AGG - chr5_1:50552659-50552678 Msa0735340:CDS 25.0%
!!! AATAGTATCCTTTTTTGAAG+AGG + chr5_1:50552670-50552689 None:intergenic 25.0%
! AATAGCAAAAATCAACTTAG+AGG - chr5_1:50552738-50552757 Msa0735340:CDS 25.0%
! ATAGCAAAAATCAACTTAGA+GGG - chr5_1:50552739-50552758 Msa0735340:CDS 25.0%
!!! CTAATTTTGAGTTATGAGTT+AGG + chr5_1:50552989-50553008 None:intergenic 25.0%
! ATAAATCTAACATCGATACA+CGG - chr5_1:50553041-50553060 Msa0735340:intron 25.0%
!! ATTAGTAAAAACCATTGACT+TGG + chr5_1:50553141-50553160 None:intergenic 25.0%
!!! GGATTTAAAGTTTTAAACAC+TGG + chr5_1:50553204-50553223 None:intergenic 25.0%
! TATATTTCTCAACAAGGTTA+AGG - chr5_1:50552630-50552649 Msa0735340:CDS 25.0%
! TTTAACATCCTCTTCAAAAA+AGG - chr5_1:50552659-50552678 Msa0735340:CDS 25.0%
!!! AATAGTATCCTTTTTTGAAG+AGG + chr5_1:50552670-50552689 None:intergenic 25.0%
! AATAGCAAAAATCAACTTAG+AGG - chr5_1:50552738-50552757 Msa0735340:CDS 25.0%
! ATAGCAAAAATCAACTTAGA+GGG - chr5_1:50552739-50552758 Msa0735340:CDS 25.0%
!!! CTAATTTTGAGTTATGAGTT+AGG + chr5_1:50552989-50553008 None:intergenic 25.0%
! ATAAATCTAACATCGATACA+CGG - chr5_1:50553041-50553060 Msa0735340:intron 25.0%
!! ATTAGTAAAAACCATTGACT+TGG + chr5_1:50553141-50553160 None:intergenic 25.0%
!!! GGATTTAAAGTTTTAAACAC+TGG + chr5_1:50553204-50553223 None:intergenic 25.0%
! CAAGATTTTCACTATGTTCT+TGG - chr5_1:50552571-50552590 Msa0735340:CDS 30.0%
CTTATTCACAAATTATGGGA+AGG - chr5_1:50552767-50552786 Msa0735340:CDS 30.0%
GTGAAAAATAAGGAGAGAAA+GGG + chr5_1:50552888-50552907 None:intergenic 30.0%
CAATGTCTCTAAATTGCTAT+TGG - chr5_1:50552957-50552976 Msa0735340:intron 30.0%
AAAAGTTATGACCAAGTCAA+TGG - chr5_1:50553127-50553146 Msa0735340:intron 30.0%
AGATTAAGAGATCCTGTTTA+TGG - chr5_1:50553362-50553381 Msa0735340:CDS 30.0%
! CAAGATTTTCACTATGTTCT+TGG - chr5_1:50552571-50552590 Msa0735340:CDS 30.0%
CTTATTCACAAATTATGGGA+AGG - chr5_1:50552767-50552786 Msa0735340:CDS 30.0%
GTGAAAAATAAGGAGAGAAA+GGG + chr5_1:50552888-50552907 None:intergenic 30.0%
CAATGTCTCTAAATTGCTAT+TGG - chr5_1:50552957-50552976 Msa0735340:intron 30.0%
AAAAGTTATGACCAAGTCAA+TGG - chr5_1:50553127-50553146 Msa0735340:intron 30.0%
AGATTAAGAGATCCTGTTTA+TGG - chr5_1:50553362-50553381 Msa0735340:CDS 30.0%
GGTGAAAAATAAGGAGAGAA+AGG + chr5_1:50552889-50552908 None:intergenic 35.0%
! TGAACAGCTGCAAATTTTTG+AGG + chr5_1:50552919-50552938 None:intergenic 35.0%
! GCAGCTGTTCATAAAGTTTT+TGG - chr5_1:50552928-50552947 Msa0735340:intron 35.0%
!!! ATTTTTTAGGAGGTACCTGA+AGG - chr5_1:50553293-50553312 Msa0735340:CDS 35.0%
! GTAGTTCTGCTTGTAAAGAT+TGG + chr5_1:50553424-50553443 None:intergenic 35.0%
!! TGAGAAGCCAATACTTTTTG+TGG + chr5_1:50553605-50553624 None:intergenic 35.0%
!!! TGACTCATTGTTGTTTTAGG+TGG + chr5_1:50553680-50553699 None:intergenic 35.0%
!!! CCATGACTCATTGTTGTTTT+AGG + chr5_1:50553683-50553702 None:intergenic 35.0%
CCTAAAACAACAATGAGTCA+TGG - chr5_1:50553680-50553699 Msa0735340:intron 35.0%
GGTGAAAAATAAGGAGAGAA+AGG + chr5_1:50552889-50552908 None:intergenic 35.0%
! TGAACAGCTGCAAATTTTTG+AGG + chr5_1:50552919-50552938 None:intergenic 35.0%
! GCAGCTGTTCATAAAGTTTT+TGG - chr5_1:50552928-50552947 Msa0735340:intron 35.0%
!!! ATTTTTTAGGAGGTACCTGA+AGG - chr5_1:50553293-50553312 Msa0735340:CDS 35.0%
! GTAGTTCTGCTTGTAAAGAT+TGG + chr5_1:50553424-50553443 None:intergenic 35.0%
!! TGAGAAGCCAATACTTTTTG+TGG + chr5_1:50553605-50553624 None:intergenic 35.0%
!!! TGACTCATTGTTGTTTTAGG+TGG + chr5_1:50553680-50553699 None:intergenic 35.0%
!!! CCATGACTCATTGTTGTTTT+AGG + chr5_1:50553683-50553702 None:intergenic 35.0%
CCTAAAACAACAATGAGTCA+TGG - chr5_1:50553680-50553699 Msa0735340:intron 35.0%
AATTTACCTGTCTCTGTCTC+TGG + chr5_1:50552516-50552535 None:intergenic 40.0%
!! GGTCTCTAGCTCTTCTAATA+AGG - chr5_1:50552592-50552611 Msa0735340:CDS 40.0%
ATCTTTGTGGTCCAACTTCT+GGG - chr5_1:50552794-50552813 Msa0735340:CDS 40.0%
! TTTAAGGTTGTCCCAGAAGT+TGG + chr5_1:50552808-50552827 None:intergenic 40.0%
ACAAGGGGTTACTGTGTTTA+AGG + chr5_1:50552824-50552843 None:intergenic 40.0%
ATAGCTTACATGCAGCACAA+GGG + chr5_1:50552840-50552859 None:intergenic 40.0%
AATAGCTTACATGCAGCACA+AGG + chr5_1:50552841-50552860 None:intergenic 40.0%
ATTGAGAAGAAGATGTGCTG+AGG - chr5_1:50552858-50552877 Msa0735340:CDS 40.0%
ATCTAACATCGATACACGGT+CGG - chr5_1:50553045-50553064 Msa0735340:intron 40.0%
AGATCCTGTTTATGGATGCA+TGG - chr5_1:50553370-50553389 Msa0735340:CDS 40.0%
GATCCTGTTTATGGATGCAT+GGG - chr5_1:50553371-50553390 Msa0735340:CDS 40.0%
CCTTGTGAATTTGCACTTGT+AGG + chr5_1:50553521-50553540 None:intergenic 40.0%
CCTACAAGTGCAAATTCACA+AGG - chr5_1:50553518-50553537 Msa0735340:intron 40.0%
!! GAAGCCAATACTTTTTGTGG+CGG + chr5_1:50553602-50553621 None:intergenic 40.0%
AATTTACCTGTCTCTGTCTC+TGG + chr5_1:50552516-50552535 None:intergenic 40.0%
!! GGTCTCTAGCTCTTCTAATA+AGG - chr5_1:50552592-50552611 Msa0735340:CDS 40.0%
ATCTTTGTGGTCCAACTTCT+GGG - chr5_1:50552794-50552813 Msa0735340:CDS 40.0%
! TTTAAGGTTGTCCCAGAAGT+TGG + chr5_1:50552808-50552827 None:intergenic 40.0%
ACAAGGGGTTACTGTGTTTA+AGG + chr5_1:50552824-50552843 None:intergenic 40.0%
ATAGCTTACATGCAGCACAA+GGG + chr5_1:50552840-50552859 None:intergenic 40.0%
AATAGCTTACATGCAGCACA+AGG + chr5_1:50552841-50552860 None:intergenic 40.0%
ATTGAGAAGAAGATGTGCTG+AGG - chr5_1:50552858-50552877 Msa0735340:CDS 40.0%
ATCTAACATCGATACACGGT+CGG - chr5_1:50553045-50553064 Msa0735340:intron 40.0%
AGATCCTGTTTATGGATGCA+TGG - chr5_1:50553370-50553389 Msa0735340:CDS 40.0%
GATCCTGTTTATGGATGCAT+GGG - chr5_1:50553371-50553390 Msa0735340:CDS 40.0%
CCTTGTGAATTTGCACTTGT+AGG + chr5_1:50553521-50553540 None:intergenic 40.0%
CCTACAAGTGCAAATTCACA+AGG - chr5_1:50553518-50553537 Msa0735340:intron 40.0%
!! GAAGCCAATACTTTTTGTGG+CGG + chr5_1:50553602-50553621 None:intergenic 40.0%
!! ATGGGAAGGAAGCATCTTTG+TGG - chr5_1:50552781-50552800 Msa0735340:CDS 45.0%
CATCTTTGTGGTCCAACTTC+TGG - chr5_1:50552793-50552812 Msa0735340:CDS 45.0%
TAGCTTACATGCAGCACAAG+GGG + chr5_1:50552839-50552858 None:intergenic 45.0%
GGCTCGTGTGGTGAAAAATA+AGG + chr5_1:50552898-50552917 None:intergenic 45.0%
!!! GCAAATTTTTGAGGCTCGTG+TGG + chr5_1:50552910-50552929 None:intergenic 45.0%
AGCAGATGCAGCAAATAGCA+TGG - chr5_1:50553322-50553341 Msa0735340:CDS 45.0%
AAAGTCGTAGGAAGAGGAAG+AGG + chr5_1:50553554-50553573 None:intergenic 45.0%
!! AATACTTTTTGTGGCGGAGG+AGG + chr5_1:50553596-50553615 None:intergenic 45.0%
! TCCTCCGCCACAAAAAGTAT+TGG - chr5_1:50553595-50553614 Msa0735340:intron 45.0%
AAGACGAAGACAACGACGAA+AGG + chr5_1:50553637-50553656 None:intergenic 45.0%
!! ATGGGAAGGAAGCATCTTTG+TGG - chr5_1:50552781-50552800 Msa0735340:CDS 45.0%
CATCTTTGTGGTCCAACTTC+TGG - chr5_1:50552793-50552812 Msa0735340:CDS 45.0%
TAGCTTACATGCAGCACAAG+GGG + chr5_1:50552839-50552858 None:intergenic 45.0%
GGCTCGTGTGGTGAAAAATA+AGG + chr5_1:50552898-50552917 None:intergenic 45.0%
!!! GCAAATTTTTGAGGCTCGTG+TGG + chr5_1:50552910-50552929 None:intergenic 45.0%
AGCAGATGCAGCAAATAGCA+TGG - chr5_1:50553322-50553341 Msa0735340:CDS 45.0%
AAAGTCGTAGGAAGAGGAAG+AGG + chr5_1:50553554-50553573 None:intergenic 45.0%
!! AATACTTTTTGTGGCGGAGG+AGG + chr5_1:50553596-50553615 None:intergenic 45.0%
! TCCTCCGCCACAAAAAGTAT+TGG - chr5_1:50553595-50553614 Msa0735340:intron 45.0%
AAGACGAAGACAACGACGAA+AGG + chr5_1:50553637-50553656 None:intergenic 45.0%
!!! AAATTTTAAATCTATTTTTT+AGG - chr5_1:50553280-50553299 Msa0735340:CDS 5.0%
!!! AAATTTTAAATCTATTTTTT+AGG - chr5_1:50553280-50553299 Msa0735340:CDS 5.0%
ACATCGATACACGGTCGGTT+AGG - chr5_1:50553050-50553069 Msa0735340:intron 50.0%
GCATCTGCTCTTTGTCCTTC+AGG + chr5_1:50553311-50553330 None:intergenic 50.0%
GCACCCATGCATCCATAAAC+AGG + chr5_1:50553377-50553396 None:intergenic 50.0%
GGAGCTAAAGTCGTAGGAAG+AGG + chr5_1:50553560-50553579 None:intergenic 50.0%
!! GCCAATACTTTTTGTGGCGG+AGG + chr5_1:50553599-50553618 None:intergenic 50.0%
ACATCGATACACGGTCGGTT+AGG - chr5_1:50553050-50553069 Msa0735340:intron 50.0%
GCATCTGCTCTTTGTCCTTC+AGG + chr5_1:50553311-50553330 None:intergenic 50.0%
GCACCCATGCATCCATAAAC+AGG + chr5_1:50553377-50553396 None:intergenic 50.0%
GGAGCTAAAGTCGTAGGAAG+AGG + chr5_1:50553560-50553579 None:intergenic 50.0%
!! GCCAATACTTTTTGTGGCGG+AGG + chr5_1:50553599-50553618 None:intergenic 50.0%
GGATGTCCAGAGACAGAGAC+AGG - chr5_1:50552507-50552526 Msa0735340:CDS 55.0%
GACGGAGGAGCTAAAGTCGT+AGG + chr5_1:50553566-50553585 None:intergenic 55.0%
GGATGTCCAGAGACAGAGAC+AGG - chr5_1:50552507-50552526 Msa0735340:CDS 55.0%
GACGGAGGAGCTAAAGTCGT+AGG + chr5_1:50553566-50553585 None:intergenic 55.0%
GGAGGAGGAGCTAGAGACGG+AGG + chr5_1:50553581-50553600 None:intergenic 65.0%
GGCGGAGGAGGAGCTAGAGA+CGG + chr5_1:50553584-50553603 None:intergenic 65.0%
GGAGGAGGAGCTAGAGACGG+AGG + chr5_1:50553581-50553600 None:intergenic 65.0%
GGCGGAGGAGGAGCTAGAGA+CGG + chr5_1:50553584-50553603 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 50552501 50553739 50552501 ID=Msa0735340;Name=Msa0735340
chr5_1 mRNA 50552501 50553739 50552501 ID=Msa0735340-mRNA-1;Parent=Msa0735340;Name=Msa0735340-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|0.33|3|0|239
chr5_1 exon 50553712 50553739 50553712 ID=Msa0735340-mRNA-1:exon:14252;Parent=Msa0735340-mRNA-1
chr5_1 exon 50553262 50553515 50553262 ID=Msa0735340-mRNA-1:exon:14251;Parent=Msa0735340-mRNA-1
chr5_1 exon 50552501 50552938 50552501 ID=Msa0735340-mRNA-1:exon:14250;Parent=Msa0735340-mRNA-1
chr5_1 CDS 50553712 50553739 50553712 ID=Msa0735340-mRNA-1:cds;Parent=Msa0735340-mRNA-1
chr5_1 CDS 50553262 50553515 50553262 ID=Msa0735340-mRNA-1:cds;Parent=Msa0735340-mRNA-1
chr5_1 CDS 50552501 50552938 50552501 ID=Msa0735340-mRNA-1:cds;Parent=Msa0735340-mRNA-1
Gene Sequence

>Msa0735340

ATGTTTGGATGTCCAGAGACAGAGACAGAAAGATTAGATGAAATAGCAAAAATCAACTTAGAGGGAGAAACTTATTCACAAATTATGGGAAGGAAGCATCTTTGTGGTCCAACTTCTGGGACAACCTTAAACACAGTAACCCCTTGTGCTGCATGTAAGCTATTGAGAAGAAGATGTGCTGAGGAATGCCCTTTCTCTCCTTATTTTTCACCACACGAGCCTCAAAAATTTGCAGCTGTTCATAAAGTTTTTGGTGCTAGCAATGTCTCTAAATTGCTATTGGAGGTACCTGAAGGACAAAGAGCAGATGCAGCAAATAGCATGGTTTATGAAGCTAATTTAAGATTAAGAGATCCTGTTTATGGATGCATGGGTGCAATATCATCATTACAACAACAAGTCCAATCTTTACAAGCAGAACTACATGCAGTAAGAACAGAGCTACTAAAATACAAATATAGAGAAGCAGCTAGTTTCATTTCTTCTCAAGTATCAATGCCTACAAGTGCAAATTCACAAGGTCTTTCTCAACCTCTTCCTCTTCCTACGACTTTAGCTCCTCCGTCTCTAGCTCCTCCTCCGCCACAAAAAGTATTGGCTTCTCAATCTATTATCCTTTCGTCGTTGTCTTCGTCTTCAACTTCATCTGTTTACACTCCACCTAAAACAACAATGAGTCATGGATCTATTTCTAGTGAAAATATTCCATATTTTGTTTAG

Protein sequence

>Msa0735340

MFGCPETETERLDEIAKINLEGETYSQIMGRKHLCGPTSGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLLEVPEGQRADAANSMVYEANLRLRDPVYGCMGAISSLQQQVQSLQAELHAVRTELLKYKYREAASFISSQVSMPTSANSQGLSQPLPLPTTLAPPSLAPPPPQKVLASQSIILSSLSSSSTSSVYTPPKTTMSHGSISSENIPYFV*