AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0797980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797980 MtrunA17_Chr5g0401881 87.903 248 6 1 1 248 1 224 1.53e-156 433
Msa0797980 MtrunA17_Chr4g0044531 56.481 216 60 3 31 246 38 219 1.60e-77 233
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797980 AT4G36910.1 64.356 202 48 1 47 248 59 236 5.77e-89 263
Msa0797980 AT4G34120.1 63.212 193 47 1 54 246 68 236 1.73e-83 249

Find 79 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATTAGAAGTAAAATTT+TGG 0.185158 5_3:+10419387 Msa0797980:three_prime_UTR
TTAGCTCTGGACTCCATTTC+AGG 0.205192 5_3:+10417397 Msa0797980:CDS
TTCTAGTTGAATTGCGATTA+TGG 0.229127 5_3:-10414596 None:intergenic
AATAGATATACTAGAGAAAA+TGG 0.252340 5_3:-10416548 None:intergenic
AATCCTATCATGCTTTCTTT+TGG 0.275870 5_3:-10419291 None:intergenic
TTAAATCAATTTACCTGAAA+TGG 0.278931 5_3:-10417410 None:intergenic
TATTTAAGACAAACTGAATA+TGG 0.289307 5_3:-10416608 None:intergenic
CTTGTTGAGCACAGAATAAC+TGG 0.293494 5_3:+10416479 Msa0797980:CDS
ATTCAACTAGAAAGCTATTA+TGG 0.296576 5_3:+10414607 Msa0797980:exon
GAAATCAAACAACAAATCTT+TGG 0.298554 5_3:-10419326 None:intergenic
TTCCAGATGTTGACAGTACT+TGG 0.329390 5_3:+10417632 Msa0797980:CDS
TTCCCGTGATTGATGATAAC+TGG 0.341524 5_3:+10416504 Msa0797980:CDS
ATGGAAAGAGCAATGATATA+TGG 0.349595 5_3:-10416589 None:intergenic
GCGGCGCGTGGATTGAAAAT+AGG 0.355718 5_3:-10414677 None:intergenic
ACCTTCATCCACAGTTGTTG+TGG 0.416465 5_3:-10416326 None:intergenic
TCCGAATGTTCACATTGATA+AGG 0.418921 5_3:+10419470 Msa0797980:three_prime_UTR
CCTTCATCCACAGTTGTTGT+GGG 0.420672 5_3:-10416325 None:intergenic
CAGCCAAAAGAAAGCATGAT+AGG 0.423036 5_3:+10419288 Msa0797980:exon
AATAGGACGGGGAGTGGCGG+AGG 0.446615 5_3:-10414660 None:intergenic
TCCTTATCAATGTGAACATT+CGG 0.451797 5_3:-10419471 None:intergenic
TTCCAAGTACTGTCAACATC+TGG 0.453394 5_3:-10417634 None:intergenic
AGATTACGACCTGTTAGCTC+TGG 0.456324 5_3:+10417384 Msa0797980:intron
ATTGATGACCACTGCTCCTA+TGG 0.465013 5_3:+10418843 Msa0797980:CDS
CTACCCTCAGCATCTACAAC+TGG 0.468514 5_3:-10419115 None:intergenic
AAATGGAGTCCAGAGCTAAC+AGG 0.469784 5_3:-10417393 None:intergenic
TGTAGATGCTGAGGGTAGAT+TGG 0.480195 5_3:+10419120 Msa0797980:CDS
CAAAGGAAGAAGAAATTGAA+GGG 0.482298 5_3:-10414564 None:intergenic
TCTCACCGCTAATTCCGTTC+CGG 0.495796 5_3:+10414775 Msa0797980:CDS
TAATCATGTTCCACGGGCTA+AGG 0.497927 5_3:+10419536 Msa0797980:three_prime_UTR
CCTAGCAGCATCCTCAAGAT+TGG 0.497947 5_3:-10418881 None:intergenic
GATTGCTGAGTAAGACCAAC+GGG 0.500361 5_3:+10418806 Msa0797980:CDS
CGGAAAGCGACGGCGGCGCG+TGG 0.521919 5_3:-10414689 None:intergenic
ATATCTATTGATAAAACTTG+TGG 0.525367 5_3:+10416562 Msa0797980:CDS
ACATACCGGAACGGAATTAG+CGG 0.526014 5_3:-10414780 None:intergenic
GAGTGGCGGAGGAGAGTGTA+GGG 0.527712 5_3:-10414649 None:intergenic
GTTGTATTAATCATGTTCCA+CGG 0.528897 5_3:+10419529 Msa0797980:three_prime_UTR
ACAAAGGAAGAAGAAATTGA+AGG 0.531134 5_3:-10414565 None:intergenic
ATTGAAAATAGGACGGGGAG+TGG 0.534343 5_3:-10414666 None:intergenic
GGAGTGGCGGAGGAGAGTGT+AGG 0.542338 5_3:-10414650 None:intergenic
TTGTATTAATCATGTTCCAC+GGG 0.546451 5_3:+10419530 Msa0797980:three_prime_UTR
GCGTGGATTGAAAATAGGAC+GGG 0.546985 5_3:-10414672 None:intergenic
GCGGAGGAGAGTGTAGGGAA+AGG 0.547075 5_3:-10414644 None:intergenic
GTGGTCTCGCGAACAACCAT+AGG 0.552213 5_3:-10418859 None:intergenic
AGCAGCATCCTCAAGATTGG+TGG 0.555993 5_3:-10418878 None:intergenic
CTTCCAGTTATCATCAATCA+CGG 0.558201 5_3:-10416507 None:intergenic
AAGACCAACGGGAAGGTGAT+CGG 0.559075 5_3:+10418817 Msa0797980:CDS
CGCGTGGATTGAAAATAGGA+CGG 0.574964 5_3:-10414673 None:intergenic
TCGCGAGACCACCAATCTTG+AGG 0.577555 5_3:+10418870 Msa0797980:CDS
TTCACCGATCACCTTCCCGT+TGG 0.578952 5_3:-10418821 None:intergenic
CCCACAACAACTGTGGATGA+AGG 0.580234 5_3:+10416325 Msa0797980:CDS
GAAAATAGGACGGGGAGTGG+CGG 0.582724 5_3:-10414663 None:intergenic
CCTTCCAGTTGTAGATGCTG+AGG 0.595431 5_3:+10419111 Msa0797980:CDS
CCAATCTTGAGGATGCTGCT+AGG 0.597922 5_3:+10418881 Msa0797980:CDS
TTCCAGTTATCATCAATCAC+GGG 0.598120 5_3:-10416506 None:intergenic
CAATGCTGGTTTCAGGTCAA+GGG 0.599754 5_3:+10417590 Msa0797980:intron
CACATTGATAAGGACCACCT+TGG 0.607291 5_3:+10419480 Msa0797980:three_prime_UTR
TCTTTGTCGCGGTACAACAC+AGG 0.611647 5_3:+10414429 Msa0797980:five_prime_UTR
GAGCGGAGGAGTGGAAGCAT+CGG 0.614909 5_3:-10414709 None:intergenic
CTTGAATTATCCTTAGCCCG+TGG 0.622195 5_3:-10419546 None:intergenic
CTTCCAGTTGTAGATGCTGA+GGG 0.623183 5_3:+10419112 Msa0797980:CDS
AAGGAAGAAGAAATTGAAGG+GGG 0.626210 5_3:-10414562 None:intergenic
CTTTGTCATAAAGTCACCGA+CGG 0.632801 5_3:-10416278 None:intergenic
AACAACAACAACTATATCTG+CGG 0.634104 5_3:+10414472 Msa0797980:five_prime_UTR
TCTGTTGTTTGTCTTTGTCG+CGG 0.635623 5_3:+10414418 None:intergenic
AAAGGAAGAAGAAATTGAAG+GGG 0.639177 5_3:-10414563 None:intergenic
GTGGAAGCATCGGAAAGCGA+CGG 0.640326 5_3:-10414699 None:intergenic
CGTGGATTGAAAATAGGACG+GGG 0.642145 5_3:-10414671 None:intergenic
ATATACTAGAGAAAATGGAT+AGG 0.645861 5_3:-10416543 None:intergenic
CCTCAGCATCTACAACTGGA+AGG 0.651284 5_3:-10419111 None:intergenic
GAAGCATCGGAAAGCGACGG+CGG 0.655395 5_3:-10414696 None:intergenic
AGTGAAGCCCACAACAACTG+TGG 0.656134 5_3:+10416318 Msa0797980:CDS
GCGAACAACCATAGGAGCAG+TGG 0.657026 5_3:-10418851 None:intergenic
GCTGAGTAAGACCAACGGGA+AGG 0.657142 5_3:+10418810 Msa0797980:CDS
AAGGTTGGGATTATCACTAG+AGG 0.659792 5_3:+10419229 Msa0797980:intron
TTTCAACATCATTATCACCA+AGG 0.662460 5_3:-10419497 None:intergenic
ACACAGGCAAGTGGAGAGTG+AGG 0.669862 5_3:+10414445 Msa0797980:five_prime_UTR
AGATTGCTGAGTAAGACCAA+CGG 0.671463 5_3:+10418805 Msa0797980:CDS
GATTATGGACCAGAAAACAA+AGG 0.694008 5_3:-10414581 None:intergenic
CAACATCATTATCACCAAGG+TGG 0.699176 5_3:-10419494 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGAATACAAAATTAAAT+TGG - chr5_3:10416159-10416178 None:intergenic 10.0%
!! TTTGTATTCTTATTATTATT+TGG + chr5_3:10416166-10416185 Msa0797980:intron 10.0%
!!! TAATTCTTTCTTCATATTTT+GGG - chr5_3:10415107-10415126 None:intergenic 15.0%
!! AATTTCAATTAAGTTAACAA+GGG - chr5_3:10415637-10415656 None:intergenic 15.0%
!! AAATTTCAATTAAGTTAACA+AGG - chr5_3:10415638-10415657 None:intergenic 15.0%
!!! TTTTGATTTGTTATTGATTT+AGG + chr5_3:10415846-10415865 Msa0797980:intron 15.0%
!!! AAAATTAAATTGGTTTGATT+TGG - chr5_3:10416149-10416168 None:intergenic 15.0%
!! AAATTAAAAATGCCAAAAAA+AGG - chr5_3:10417527-10417546 None:intergenic 15.0%
!!! TTGTTTTCACTATTTAATTA+AGG + chr5_3:10418961-10418980 Msa0797980:intron 15.0%
!!! TTGAATTAGAAGTAAAATTT+TGG + chr5_3:10419387-10419406 Msa0797980:three_prime_UTR 15.0%
!! TAAGAAAAGAAAAAACATAC+CGG - chr5_3:10414797-10414816 None:intergenic 20.0%
!! TAGCAATTTCTTGAAAAAAT+TGG + chr5_3:10414902-10414921 Msa0797980:intron 20.0%
!! AGCAATTTCTTGAAAAAATT+GGG + chr5_3:10414903-10414922 Msa0797980:intron 20.0%
!!! CTAATTCTTTCTTCATATTT+TGG - chr5_3:10415108-10415127 None:intergenic 20.0%
!! CAAAATATGAAGAAAGAATT+AGG + chr5_3:10415106-10415125 Msa0797980:intron 20.0%
!! ATTTCAATTAAGTTAACAAG+GGG - chr5_3:10415636-10415655 None:intergenic 20.0%
!!! TATTGAACTTTTGAGTTAAT+AGG - chr5_3:10415980-10415999 None:intergenic 20.0%
!! AATAGATATACTAGAGAAAA+TGG - chr5_3:10416551-10416570 None:intergenic 20.0%
!! ATATCTATTGATAAAACTTG+TGG + chr5_3:10416562-10416581 Msa0797980:CDS 20.0%
!!! TATTTAAGACAAACTGAATA+TGG - chr5_3:10416611-10416630 None:intergenic 20.0%
!! ACAATAAAGGAATGAATTAA+AGG - chr5_3:10416768-10416787 None:intergenic 20.0%
!!! ATCATGAAAATTATTTCTGA+AGG + chr5_3:10417230-10417249 Msa0797980:intron 20.0%
!! TTAAATCAATTTACCTGAAA+TGG - chr5_3:10417413-10417432 None:intergenic 20.0%
!! TATTGTGTTATAATACTTTC+TGG + chr5_3:10417703-10417722 Msa0797980:intron 20.0%
!!! TTGAAATTATGCTACTTTTT+TGG + chr5_3:10418071-10418090 Msa0797980:intron 20.0%
!!! GATAGTTTATAATTTGTCTT+GGG - chr5_3:10418375-10418394 None:intergenic 20.0%
!!! AGATAGTTTATAATTTGTCT+TGG - chr5_3:10418376-10418395 None:intergenic 20.0%
!! AATTATAAACTATCTATTGC+TGG + chr5_3:10418381-10418400 Msa0797980:intron 20.0%
!! AAATTAAATCATGGTAAATG+AGG - chr5_3:10418438-10418457 None:intergenic 20.0%
!! TCATTTACCATGATTTAATT+TGG + chr5_3:10418437-10418456 Msa0797980:intron 20.0%
!! AAATGTTTATGTTTCTTAGA+TGG + chr5_3:10418650-10418669 Msa0797980:intron 20.0%
!! TGATGAAAAATATTCAACAA+AGG - chr5_3:10419063-10419082 None:intergenic 20.0%
! ATTCAACTAGAAAGCTATTA+TGG + chr5_3:10414607-10414626 Msa0797980:exon 25.0%
! GGTTGAACTAACTTATAAAT+AGG + chr5_3:10415326-10415345 Msa0797980:intron 25.0%
! GGTAAAGTTGAGATAAATAA+TGG + chr5_3:10415405-10415424 Msa0797980:intron 25.0%
!! TTTTGTATCACACTACTATT+AGG + chr5_3:10415912-10415931 Msa0797980:intron 25.0%
!!! CTTTTGAGTTAATAGGTAAA+AGG - chr5_3:10415973-10415992 None:intergenic 25.0%
! ATATACTAGAGAAAATGGAT+AGG - chr5_3:10416546-10416565 None:intergenic 25.0%
!! ATATTTGTTGAACTGATTAG+CGG - chr5_3:10417063-10417082 None:intergenic 25.0%
! GTTCAACAAATATAGTTTAG+AGG + chr5_3:10417070-10417089 Msa0797980:intron 25.0%
!! TCTTATCTGTTTTCATTTGT+TGG + chr5_3:10417440-10417459 Msa0797980:intron 25.0%
! AAAATGCTGTAAATTTCTGA+AGG - chr5_3:10417483-10417502 None:intergenic 25.0%
!!! ATTTGTTTCTATTCCAAAGT+TGG + chr5_3:10417543-10417562 Msa0797980:intron 25.0%
! ATATGTATTGTTAGTGTACT+AGG - chr5_3:10417832-10417851 None:intergenic 25.0%
! TACACTAACAATACATATCT+TGG + chr5_3:10417834-10417853 Msa0797980:intron 25.0%
!!! TATGCTACTTTTTTGGTAAA+AGG + chr5_3:10418078-10418097 Msa0797980:intron 25.0%
!! TAAAAGGAATTTTACTGCAA+AGG + chr5_3:10418094-10418113 Msa0797980:intron 25.0%
!! AAAAGGAATTTTACTGCAAA+GGG + chr5_3:10418095-10418114 Msa0797980:intron 25.0%
! GATTGTTCCAAATTAAATCA+TGG - chr5_3:10418447-10418466 None:intergenic 25.0%
!! ACATGTTTCTATGATATGTT+TGG - chr5_3:10418603-10418622 None:intergenic 25.0%
! ACAAACATGAAAACAATGAA+AGG - chr5_3:10419181-10419200 None:intergenic 25.0%
!! CATTGTTTTCATGTTTGTAA+AGG + chr5_3:10419183-10419202 Msa0797980:intron 25.0%
!!! TGTTTTTATGTGATACATGA+AGG + chr5_3:10419210-10419229 Msa0797980:intron 25.0%
! GAAATCAAACAACAAATCTT+TGG - chr5_3:10419329-10419348 None:intergenic 25.0%
!!! TAGAAGTAAAATTTTGGCTT+AGG + chr5_3:10419393-10419412 Msa0797980:three_prime_UTR 25.0%
AACAACAACAACTATATCTG+CGG + chr5_3:10414472-10414491 Msa0797980:five_prime_UTR 30.0%
AAAGGAAGAAGAAATTGAAG+GGG - chr5_3:10414566-10414585 None:intergenic 30.0%
CAAAGGAAGAAGAAATTGAA+GGG - chr5_3:10414567-10414586 None:intergenic 30.0%
ACAAAGGAAGAAGAAATTGA+AGG - chr5_3:10414568-10414587 None:intergenic 30.0%
!!! TTTCTTCTTCCTTTGTTTTC+TGG + chr5_3:10414572-10414591 Msa0797980:five_prime_UTR 30.0%
! TTCTAGTTGAATTGCGATTA+TGG - chr5_3:10414599-10414618 None:intergenic 30.0%
AAAGAAAAAACATACCGGAA+CGG - chr5_3:10414792-10414811 None:intergenic 30.0%
CTTATCCTCACGTATAAATT+TGG + chr5_3:10414813-10414832 Msa0797980:intron 30.0%
!! ATTTGGTGTAGTTGATAACT+TGG + chr5_3:10414830-10414849 Msa0797980:intron 30.0%
!! TTTGGTGTAGTTGATAACTT+GGG + chr5_3:10414831-10414850 Msa0797980:intron 30.0%
! TATTCTATTGTTGCTTGTTG+AGG + chr5_3:10414971-10414990 Msa0797980:intron 30.0%
AAGACATCTGCTATAAACTA+GGG - chr5_3:10415174-10415193 None:intergenic 30.0%
TAAGACATCTGCTATAAACT+AGG - chr5_3:10415175-10415194 None:intergenic 30.0%
CGGATAAATAAACTAACTGA+TGG + chr5_3:10415273-10415292 Msa0797980:intron 30.0%
! TGGAGTATCTTTGTAATGTT+TGG + chr5_3:10415293-10415312 Msa0797980:intron 30.0%
GTAATGTTTGGTAAAGTAAG+CGG + chr5_3:10415305-10415324 Msa0797980:intron 30.0%
!! ACATCTCAAAAAGCACTATA+GGG - chr5_3:10415566-10415585 None:intergenic 30.0%
!! AACATCTCAAAAAGCACTAT+AGG - chr5_3:10415567-10415586 None:intergenic 30.0%
GTTAGATAAAAAGTAGCAGA+TGG - chr5_3:10415739-10415758 None:intergenic 30.0%
CCTGTAAATAGAGATTAGTA+CGG + chr5_3:10415885-10415904 Msa0797980:intron 30.0%
GGTAAAAGGAAGATAATAAG+AGG - chr5_3:10415959-10415978 None:intergenic 30.0%
!! ATATTTAGCCTTAGTCTTTG+AGG + chr5_3:10415997-10416016 Msa0797980:intron 30.0%
!! TTCCTCAAATTGGTTTGATT+TGG - chr5_3:10416105-10416124 None:intergenic 30.0%
AAATCAAACCAATTTGAGGA+AGG + chr5_3:10416104-10416123 Msa0797980:intron 30.0%
ATAATGTGCAGCCAAAAAAT+GGG + chr5_3:10416248-10416267 Msa0797980:intron 30.0%
! AATCTTTTCTTCCCTTCTTT+TGG + chr5_3:10416384-10416403 Msa0797980:intron 30.0%
! ATCTTTTCTTCCCTTCTTTT+GGG + chr5_3:10416385-10416404 Msa0797980:intron 30.0%
AAACTAACTACCCAAAAGAA+GGG - chr5_3:10416398-10416417 None:intergenic 30.0%
AAAACTAACTACCCAAAAGA+AGG - chr5_3:10416399-10416418 None:intergenic 30.0%
!! TTCTTTTGGGTAGTTAGTTT+TGG + chr5_3:10416398-10416417 Msa0797980:intron 30.0%
!!! CATTTATTTTGCAACAGCTT+TGG + chr5_3:10416451-10416470 Msa0797980:intron 30.0%
ATGGAAAGAGCAATGATATA+TGG - chr5_3:10416592-10416611 None:intergenic 30.0%
GTAGTTAAACAATGTTGTGA+TGG + chr5_3:10416698-10416717 Msa0797980:intron 30.0%
TTAAACAATGTTGTGATGGT+GGG + chr5_3:10416702-10416721 Msa0797980:intron 30.0%
TTCTTACTCAAATCAGAGTT+AGG - chr5_3:10416848-10416867 None:intergenic 30.0%
!!! TTTCTGTTTTTTCACGTTGT+CGG - chr5_3:10416888-10416907 None:intergenic 30.0%
AAATCGTCAGATTCAATTGT+GGG - chr5_3:10417108-10417127 None:intergenic 30.0%
AAAATCGTCAGATTCAATTG+TGG - chr5_3:10417109-10417128 None:intergenic 30.0%
! TTACAGCATTTTCATTTCAG+AGG + chr5_3:10417491-10417510 Msa0797980:intron 30.0%
!!! GGATACTATGAACCTTTTTT+TGG + chr5_3:10417512-10417531 Msa0797980:intron 30.0%
!! CAGCATTGCACATTTTATTT+CGG - chr5_3:10417578-10417597 None:intergenic 30.0%
TCCATTGCATATTTACGTTA+AGG + chr5_3:10417728-10417747 Msa0797980:intron 30.0%
TCCTTAACGTAAATATGCAA+TGG - chr5_3:10417732-10417751 None:intergenic 30.0%
GTATTAACAACACAAAGTTC+TGG - chr5_3:10417756-10417775 None:intergenic 30.0%
ACTTATTATTACCCAACAAG+AGG + chr5_3:10417774-10417793 Msa0797980:intron 30.0%
CTGCAAAATTTCCTATAGTT+GGG - chr5_3:10417874-10417893 None:intergenic 30.0%
ACTGCAAAATTTCCTATAGT+TGG - chr5_3:10417875-10417894 None:intergenic 30.0%
!!! TTACGCATTTTTGAAGTAGA+AGG + chr5_3:10417982-10418001 Msa0797980:intron 30.0%
GAAGGAACATGGTATATATT+TGG - chr5_3:10418134-10418153 None:intergenic 30.0%
!! ACAAGTTTTATGAAGGAACA+TGG - chr5_3:10418145-10418164 None:intergenic 30.0%
!! GTTGCTTACAAGTTTTATGA+AGG - chr5_3:10418152-10418171 None:intergenic 30.0%
AGAATATGTTCACAAGTTGT+GGG + chr5_3:10418246-10418265 Msa0797980:intron 30.0%
AAACCCACTCTTCAATAATA+TGG + chr5_3:10418469-10418488 Msa0797980:intron 30.0%
AACCCACTCTTCAATAATAT+GGG + chr5_3:10418470-10418489 Msa0797980:intron 30.0%
AACGTAAACATTACCATCTA+TGG - chr5_3:10418529-10418548 None:intergenic 30.0%
TAATGAATTAATCCCTACCT+AGG + chr5_3:10418724-10418743 Msa0797980:intron 30.0%
ATGACACGCATAAAATTCAA+CGG - chr5_3:10419007-10419026 None:intergenic 30.0%
! ATTTTTCATCAGATTGTTGC+TGG + chr5_3:10419072-10419091 Msa0797980:intron 30.0%
TTTATGTGATACATGAAGGT+TGG + chr5_3:10419214-10419233 Msa0797980:intron 30.0%
TTATGTGATACATGAAGGTT+GGG + chr5_3:10419215-10419234 Msa0797980:intron 30.0%
! AATCCTATCATGCTTTCTTT+TGG - chr5_3:10419294-10419313 None:intergenic 30.0%
TCCTTATCAATGTGAACATT+CGG - chr5_3:10419474-10419493 None:intergenic 30.0%
TTTCAACATCATTATCACCA+AGG - chr5_3:10419500-10419519 None:intergenic 30.0%
GTTGTATTAATCATGTTCCA+CGG + chr5_3:10419529-10419548 Msa0797980:three_prime_UTR 30.0%
TTGTATTAATCATGTTCCAC+GGG + chr5_3:10419530-10419549 Msa0797980:three_prime_UTR 30.0%
AAGGAAGAAGAAATTGAAGG+GGG - chr5_3:10414565-10414584 None:intergenic 35.0%
GATTATGGACCAGAAAACAA+AGG - chr5_3:10414584-10414603 None:intergenic 35.0%
!! ACGAAGCTTTGAAAAATGAG+CGG - chr5_3:10414729-10414748 None:intergenic 35.0%
CTACACCAAATTTATACGTG+AGG - chr5_3:10414821-10414840 None:intergenic 35.0%
!! TAGTTGATAACTTGGGAGTT+AGG + chr5_3:10414838-10414857 Msa0797980:intron 35.0%
!! GTGAAGCATTTCAACCATTT+TGG - chr5_3:10415013-10415032 None:intergenic 35.0%
AGACATCTGCTATAAACTAG+GGG - chr5_3:10415173-10415192 None:intergenic 35.0%
ACAGTCAAAGTAGAGTTGTT+TGG + chr5_3:10415211-10415230 Msa0797980:intron 35.0%
GCTGATAAGTTAGATGATAG+CGG + chr5_3:10415253-10415272 Msa0797980:intron 35.0%
AAAATTGCTATAAGCTCGTG+AGG + chr5_3:10415452-10415471 Msa0797980:intron 35.0%
TACAGTATCTCTTGACTCTT+AGG + chr5_3:10415797-10415816 Msa0797980:intron 35.0%
CCGTACTAATCTCTATTTAC+AGG - chr5_3:10415888-10415907 None:intergenic 35.0%
AGGCCATCATCAATAATACT+CGG + chr5_3:10415932-10415951 Msa0797980:intron 35.0%
!! TATCCGACTGTTTCTAATAG+AGG + chr5_3:10416056-10416075 Msa0797980:intron 35.0%
CTTCCTCTATTAGAAACAGT+CGG - chr5_3:10416062-10416081 None:intergenic 35.0%
AGCCAAATCAAACCAATTTG+AGG + chr5_3:10416100-10416119 Msa0797980:intron 35.0%
ACACATGTTGTGTCAAACTA+GGG - chr5_3:10416222-10416241 None:intergenic 35.0%
AACACATGTTGTGTCAAACT+AGG - chr5_3:10416223-10416242 None:intergenic 35.0%
CATAATGTGCAGCCAAAAAA+TGG + chr5_3:10416247-10416266 Msa0797980:intron 35.0%
TAATGTGCAGCCAAAAAATG+GGG + chr5_3:10416249-10416268 Msa0797980:intron 35.0%
! ACCTTGTTGAAGTCTCATTT+TGG + chr5_3:10416358-10416377 Msa0797980:intron 35.0%
! CCTTGTTGAAGTCTCATTTT+GGG + chr5_3:10416359-10416378 Msa0797980:intron 35.0%
!!! TTTTGGGTAGTTAGTTTTGG+TGG + chr5_3:10416401-10416420 Msa0797980:intron 35.0%
TTCCAGTTATCATCAATCAC+GGG - chr5_3:10416509-10416528 None:intergenic 35.0%
CTTCCAGTTATCATCAATCA+CGG - chr5_3:10416510-10416529 None:intergenic 35.0%
GTTAAACAATGTTGTGATGG+TGG + chr5_3:10416701-10416720 Msa0797980:intron 35.0%
AAGACACCTGCTATATTATG+CGG + chr5_3:10416789-10416808 Msa0797980:intron 35.0%
!!! CGGCTTTGGATTTTTAACAA+AGG + chr5_3:10416809-10416828 Msa0797980:intron 35.0%
!! ACGTTGTCGGTTTCTTAAAA+CGG - chr5_3:10416875-10416894 None:intergenic 35.0%
TTTAACAGAATCTTAGCCAG+CGG - chr5_3:10416928-10416947 None:intergenic 35.0%
AAAACATGCAGTATGCATAG+AGG - chr5_3:10416975-10416994 None:intergenic 35.0%
CGAGCTATACTTTCATTTAG+AGG + chr5_3:10417033-10417052 Msa0797980:intron 35.0%
GCATTTGTGAAGACATTCAA+AGG - chr5_3:10417134-10417153 None:intergenic 35.0%
GAAGGTTGTTTATGCTTTGT+AGG + chr5_3:10417248-10417267 Msa0797980:intron 35.0%
GTTGTTTATGCTTTGTAGGT+TGG + chr5_3:10417252-10417271 Msa0797980:intron 35.0%
! ATGCTGTAAATTTCTGAAGG+TGG - chr5_3:10417480-10417499 None:intergenic 35.0%
CGAAATAAAATGTGCAATGC+TGG + chr5_3:10417576-10417595 Msa0797980:intron 35.0%
TCAGTAAAACTCCTCTTGTT+GGG - chr5_3:10417788-10417807 None:intergenic 35.0%
! GTTTTACTGAGCTGATGTTT+TGG + chr5_3:10417798-10417817 Msa0797980:intron 35.0%
AGTGGTAACTATTGTGAAAG+AGG - chr5_3:10418034-10418053 None:intergenic 35.0%
CTTTCACAATAGTTACCACT+TGG + chr5_3:10418034-10418053 Msa0797980:intron 35.0%
AACTTGTAAGCAACTTCTCA+AGG + chr5_3:10418158-10418177 Msa0797980:intron 35.0%
AGCCATATCTTATCCAATGT+GGG - chr5_3:10418224-10418243 None:intergenic 35.0%
AAGCCATATCTTATCCAATG+TGG - chr5_3:10418225-10418244 None:intergenic 35.0%
GAGAATATGTTCACAAGTTG+TGG + chr5_3:10418245-10418264 Msa0797980:intron 35.0%
GAAAACCTCACCTTACAAAT+CGG + chr5_3:10418268-10418287 Msa0797980:intron 35.0%
!! ACCTTACAAATCGGTTTGTA+GGG + chr5_3:10418277-10418296 Msa0797980:intron 35.0%
AAACTATCTATTGCTGGTGT+AGG + chr5_3:10418387-10418406 Msa0797980:intron 35.0%
CACCCATATTATTGAAGAGT+GGG - chr5_3:10418475-10418494 None:intergenic 35.0%
TTAATTGCATGCTCCATAGA+TGG + chr5_3:10418513-10418532 Msa0797980:intron 35.0%
TCATAGAAACATGTTCAGCA+CGG + chr5_3:10418609-10418628 Msa0797980:intron 35.0%
TTCAAAATGAACAGACACCA+AGG - chr5_3:10418922-10418941 None:intergenic 35.0%
GCATAAAATTCAACGGTTTG+AGG - chr5_3:10419000-10419019 None:intergenic 35.0%
CCAAAGATAACAGAAGAAAG+GGG - chr5_3:10419153-10419172 None:intergenic 35.0%
CCCAAAGATAACAGAAGAAA+GGG - chr5_3:10419154-10419173 None:intergenic 35.0%
CCCTTTCTTCTGTTATCTTT+GGG + chr5_3:10419151-10419170 Msa0797980:intron 35.0%
ACCCAAAGATAACAGAAGAA+AGG - chr5_3:10419155-10419174 None:intergenic 35.0%
TCCGAATGTTCACATTGATA+AGG + chr5_3:10419470-10419489 Msa0797980:three_prime_UTR 35.0%
!! AAATTGAAGGGGGTTTTGGT+GGG - chr5_3:10414555-10414574 None:intergenic 40.0%
! GAAGAAATTGAAGGGGGTTT+TGG - chr5_3:10414559-10414578 None:intergenic 40.0%
!! AAGCTTTGAAAAATGAGCGG+AGG - chr5_3:10414726-10414745 None:intergenic 40.0%
!! GCTCATTTTTCAAAGCTTCG+TGG + chr5_3:10414728-10414747 Msa0797980:CDS 40.0%
! AGAGTGTTAGCAGCAAAAAG+CGG - chr5_3:10414758-10414777 None:intergenic 40.0%
! TCTATTGTTGCTTGTTGAGG+AGG + chr5_3:10414974-10414993 Msa0797980:intron 40.0%
! GTAGAGTGTTTGTGCCAAAA+TGG + chr5_3:10414996-10415015 Msa0797980:intron 40.0%
TCACTTTGCAATTCTCCCAA+AGG + chr5_3:10415029-10415048 Msa0797980:intron 40.0%
CACTTTGCAATTCTCCCAAA+GGG + chr5_3:10415030-10415049 Msa0797980:intron 40.0%
ATACAAGCTATCGTCCCTTT+GGG - chr5_3:10415047-10415066 None:intergenic 40.0%
AATACAAGCTATCGTCCCTT+TGG - chr5_3:10415048-10415067 None:intergenic 40.0%
GAATTAGGCTCTGTTTAGCA+AGG + chr5_3:10415121-10415140 Msa0797980:intron 40.0%
TCTGCTATAAACTAGGGGTT+CGG - chr5_3:10415168-10415187 None:intergenic 40.0%
TCATCTAACTTATCAGCTCG+TGG - chr5_3:10415250-10415269 None:intergenic 40.0%
TTCCTCAAGCAAGATTGCAT+CGG + chr5_3:10415383-10415402 Msa0797980:intron 40.0%
ACTATAGGGTCTGTTTGGTA+AGG - chr5_3:10415552-10415571 None:intergenic 40.0%
! AAAGCACTATAGGGTCTGTT+TGG - chr5_3:10415557-10415576 None:intergenic 40.0%
CAGATGGTGAATAAACTAGC+AGG - chr5_3:10415723-10415742 None:intergenic 40.0%
GGTCCGAGTATTATTGATGA+TGG - chr5_3:10415938-10415957 None:intergenic 40.0%
ATGTCACTCCTCAAAGACTA+AGG - chr5_3:10416008-10416027 None:intergenic 40.0%
!! CGACTGTTTCTAATAGAGGA+AGG + chr5_3:10416060-10416079 Msa0797980:intron 40.0%
AGAGGAAGGTAGTTCCTATT+TGG + chr5_3:10416074-10416093 Msa0797980:intron 40.0%
GAGGAAGGTAGTTCCTATTT+GGG + chr5_3:10416075-10416094 Msa0797980:intron 40.0%
AGGAAGGTAGTTCCTATTTG+GGG + chr5_3:10416076-10416095 Msa0797980:intron 40.0%
!! TTGATTTGGCTACCCCAAAT+AGG - chr5_3:10416091-10416110 None:intergenic 40.0%
AGGAACTACCTTCCTCAAAT+TGG - chr5_3:10416115-10416134 None:intergenic 40.0%
TGAGGAAGGTAGTTCCTATT+TGG + chr5_3:10416118-10416137 Msa0797980:intron 40.0%
GAGGAAGGTAGTTCCTATTT+GGG + chr5_3:10416075-10416094 Msa0797980:intron 40.0%
AGGAAGGTAGTTCCTATTTG+GGG + chr5_3:10416076-10416095 Msa0797980:intron 40.0%
!! TTGATTTGGCTACCCCAAAT+AGG - chr5_3:10416091-10416110 None:intergenic 40.0%
CTTTGTCATAAAGTCACCGA+CGG - chr5_3:10416281-10416300 None:intergenic 40.0%
CCCAAAATGAGACTTCAACA+AGG - chr5_3:10416362-10416381 None:intergenic 40.0%
CTTGTTGAGCACAGAATAAC+TGG + chr5_3:10416479-10416498 Msa0797980:CDS 40.0%
! TTCCCGTGATTGATGATAAC+TGG + chr5_3:10416504-10416523 Msa0797980:CDS 40.0%
! AGGACAGCAGATTTTGAATG+AGG - chr5_3:10416748-10416767 None:intergenic 40.0%
AGCAGGTGTCTTGACAATAA+AGG - chr5_3:10416781-10416800 None:intergenic 40.0%
AAAACTTCAGTAAATGCCGC+TGG + chr5_3:10416909-10416928 Msa0797980:intron 40.0%
TGCAGTTAGCACAATATTGC+AGG + chr5_3:10417200-10417219 Msa0797980:intron 40.0%
!! AAATGTGCAATGCTGGTTTC+AGG + chr5_3:10417583-10417602 Msa0797980:intron 40.0%
TTCCAGATGTTGACAGTACT+TGG + chr5_3:10417632-10417651 Msa0797980:CDS 40.0%
! TTCCAAGTACTGTCAACATC+TGG - chr5_3:10417637-10417656 None:intergenic 40.0%
CTCAGTAAAACTCCTCTTGT+TGG - chr5_3:10417789-10417808 None:intergenic 40.0%
TTTACCTGTGTCCCAACTAT+AGG + chr5_3:10417860-10417879 Msa0797980:intron 40.0%
ATTTCCTATAGTTGGGACAC+AGG - chr5_3:10417867-10417886 None:intergenic 40.0%
TACCACTTGGTTGCTCATTA+TGG + chr5_3:10418047-10418066 Msa0797980:intron 40.0%
AACCATAATGAGCAACCAAG+TGG - chr5_3:10418052-10418071 None:intergenic 40.0%
GTCCCACATTGGATAAGATA+TGG + chr5_3:10418219-10418238 Msa0797980:intron 40.0%
!! ACAAACCGATTTGTAAGGTG+AGG - chr5_3:10418276-10418295 None:intergenic 40.0%
!! CACCTTACAAATCGGTTTGT+AGG + chr5_3:10418276-10418295 Msa0797980:intron 40.0%
!! ACCCTACAAACCGATTTGTA+AGG - chr5_3:10418281-10418300 None:intergenic 40.0%
CCACCCATATTATTGAAGAG+TGG - chr5_3:10418476-10418495 None:intergenic 40.0%
CCACTCTTCAATAATATGGG+TGG + chr5_3:10418473-10418492 Msa0797980:intron 40.0%
AATCCCTACCTAGGTCTTAA+AGG + chr5_3:10418733-10418752 Msa0797980:intron 40.0%
!! CAAATCCACCTTTAAGACCT+AGG - chr5_3:10418744-10418763 None:intergenic 40.0%
AGATTGCTGAGTAAGACCAA+CGG + chr5_3:10418805-10418824 Msa0797980:CDS 40.0%
! GGTTCTTCTATCCTTTTCCT+TGG + chr5_3:10418902-10418921 Msa0797980:intron 40.0%
ATGAACAGACACCAAGGAAA+AGG - chr5_3:10418916-10418935 None:intergenic 40.0%
CCCCTTTCTTCTGTTATCTT+TGG + chr5_3:10419150-10419169 Msa0797980:intron 40.0%
AAGGTTGGGATTATCACTAG+AGG + chr5_3:10419229-10419248 Msa0797980:intron 40.0%
! CAGCCAAAAGAAAGCATGAT+AGG + chr5_3:10419288-10419307 Msa0797980:exon 40.0%
CAACATCATTATCACCAAGG+TGG - chr5_3:10419497-10419516 None:intergenic 40.0%
!! GAAATTGAAGGGGGTTTTGG+TGG - chr5_3:10414556-10414575 None:intergenic 45.0%
ATTGAAAATAGGACGGGGAG+TGG - chr5_3:10414669-10414688 None:intergenic 45.0%
! CGTGGATTGAAAATAGGACG+GGG - chr5_3:10414674-10414693 None:intergenic 45.0%
! GCGTGGATTGAAAATAGGAC+GGG - chr5_3:10414675-10414694 None:intergenic 45.0%
! CGCGTGGATTGAAAATAGGA+CGG - chr5_3:10414676-10414695 None:intergenic 45.0%
TTGAAAAATGAGCGGAGGAG+TGG - chr5_3:10414721-10414740 None:intergenic 45.0%
AGTGTTAGCAGCAAAAAGCG+GGG - chr5_3:10414756-10414775 None:intergenic 45.0%
GAGTGTTAGCAGCAAAAAGC+GGG - chr5_3:10414757-10414776 None:intergenic 45.0%
ACATACCGGAACGGAATTAG+CGG - chr5_3:10414783-10414802 None:intergenic 45.0%
TCCTCAAGCAAGATTGCATC+GGG + chr5_3:10415384-10415403 Msa0797980:intron 45.0%
ATAAGCTCGTGAGGAACTGA+TGG + chr5_3:10415461-10415480 Msa0797980:intron 45.0%
!!! ACGGTGTAGACCCCATTTTT+TGG - chr5_3:10416262-10416281 None:intergenic 45.0%
AAAAATGGGGTCTACACCGT+CGG + chr5_3:10416262-10416281 Msa0797980:CDS 45.0%
CCTTCATCCACAGTTGTTGT+GGG - chr5_3:10416328-10416347 None:intergenic 45.0%
ACCTTCATCCACAGTTGTTG+TGG - chr5_3:10416329-10416348 None:intergenic 45.0%
TGAGGAAAAGTTACGCTGAG+AGG - chr5_3:10416730-10416749 None:intergenic 45.0%
CCAAAGCCGCATAATATAGC+AGG - chr5_3:10416798-10416817 None:intergenic 45.0%
CCTGCTATATTATGCGGCTT+TGG + chr5_3:10416795-10416814 Msa0797980:intron 45.0%
CGTCAGATTCAATTGTGGGA+AGG - chr5_3:10417104-10417123 None:intergenic 45.0%
AGATTACGACCTGTTAGCTC+TGG + chr5_3:10417384-10417403 Msa0797980:intron 45.0%
AAATGGAGTCCAGAGCTAAC+AGG - chr5_3:10417396-10417415 None:intergenic 45.0%
!! TTAGCTCTGGACTCCATTTC+AGG + chr5_3:10417397-10417416 Msa0797980:CDS 45.0%
TCGGCTTAGAACTCCAACTT+TGG - chr5_3:10417559-10417578 None:intergenic 45.0%
!! CAATGCTGGTTTCAGGTCAA+GGG + chr5_3:10417590-10417609 Msa0797980:intron 45.0%
!! TTGACTGAGCTTGTTGGAAG+GGG - chr5_3:10417916-10417935 None:intergenic 45.0%
!! CTTGACTGAGCTTGTTGGAA+GGG - chr5_3:10417917-10417936 None:intergenic 45.0%
!! ACTTGACTGAGCTTGTTGGA+AGG - chr5_3:10417918-10417937 None:intergenic 45.0%
AAGCACTTGACTGAGCTTGT+TGG - chr5_3:10417922-10417941 None:intergenic 45.0%
TCTGTTGAGAAGTCCCACAT+TGG + chr5_3:10418208-10418227 Msa0797980:intron 45.0%
! TCGGTTTGTAGGGTTGAGTT+AGG + chr5_3:10418287-10418306 Msa0797980:intron 45.0%
CGGTTTGTAGGGTTGAGTTA+GGG + chr5_3:10418288-10418307 Msa0797980:intron 45.0%
TCATGGTAAATGAGGCAGCA+CGG - chr5_3:10418430-10418449 None:intergenic 45.0%
!! CCACCTTTAAGACCTAGGTA+GGG - chr5_3:10418739-10418758 None:intergenic 45.0%
!! TCCACCTTTAAGACCTAGGT+AGG - chr5_3:10418740-10418759 None:intergenic 45.0%
GATTGCTGAGTAAGACCAAC+GGG + chr5_3:10418806-10418825 Msa0797980:CDS 45.0%
! ATTGATGACCACTGCTCCTA+TGG + chr5_3:10418843-10418862 Msa0797980:CDS 45.0%
CTTCCAGTTGTAGATGCTGA+GGG + chr5_3:10419112-10419131 Msa0797980:CDS 45.0%
TGTAGATGCTGAGGGTAGAT+TGG + chr5_3:10419120-10419139 Msa0797980:CDS 45.0%
CACATTGATAAGGACCACCT+TGG + chr5_3:10419480-10419499 Msa0797980:three_prime_UTR 45.0%
! TAATCATGTTCCACGGGCTA+AGG + chr5_3:10419536-10419555 Msa0797980:three_prime_UTR 45.0%
CTTGAATTATCCTTAGCCCG+TGG - chr5_3:10419549-10419568 None:intergenic 45.0%
!! AAATATAAAATGATATAAAA+AGG - chr5_3:10415681-10415700 None:intergenic 5.0%
TCTTTGTCGCGGTACAACAC+AGG + chr5_3:10414429-10414448 Msa0797980:five_prime_UTR 50.0%
TCTCACCGCTAATTCCGTTC+CGG + chr5_3:10414775-10414794 Msa0797980:CDS 50.0%
TAGGCTCTGTTTAGCAAGGC+CGG + chr5_3:10415125-10415144 Msa0797980:intron 50.0%
GGTTCGGCTTTGCTAACTAG+GGG - chr5_3:10415152-10415171 None:intergenic 50.0%
GGGTTCGGCTTTGCTAACTA+GGG - chr5_3:10415153-10415172 None:intergenic 50.0%
ACCCGATGCAATCTTGCTTG+AGG - chr5_3:10415388-10415407 None:intergenic 50.0%
AGTGAAGCCCACAACAACTG+TGG + chr5_3:10416318-10416337 Msa0797980:CDS 50.0%
CCCACAACAACTGTGGATGA+AGG + chr5_3:10416325-10416344 Msa0797980:CDS 50.0%
!! GCAATGCTGGTTTCAGGTCA+AGG + chr5_3:10417589-10417608 Msa0797980:intron 50.0%
!! TGACTGAGCTTGTTGGAAGG+GGG - chr5_3:10417915-10417934 None:intergenic 50.0%
GTTGAGTTAGGGCTAACCCA+AGG + chr5_3:10418299-10418318 Msa0797980:intron 50.0%
AACACACGTCCATCACGCTT+AGG - chr5_3:10418345-10418364 None:intergenic 50.0%
ATGGTAAATGAGGCAGCACG+GGG - chr5_3:10418428-10418447 None:intergenic 50.0%
CATGGTAAATGAGGCAGCAC+GGG - chr5_3:10418429-10418448 None:intergenic 50.0%
CCCTACCTAGGTCTTAAAGG+TGG + chr5_3:10418736-10418755 Msa0797980:intron 50.0%
AAGACCAACGGGAAGGTGAT+CGG + chr5_3:10418817-10418836 Msa0797980:CDS 50.0%
AGCAGCATCCTCAAGATTGG+TGG - chr5_3:10418881-10418900 None:intergenic 50.0%
CCTAGCAGCATCCTCAAGAT+TGG - chr5_3:10418884-10418903 None:intergenic 50.0%
CCAATCTTGAGGATGCTGCT+AGG + chr5_3:10418881-10418900 Msa0797980:CDS 50.0%
CCTCAGCATCTACAACTGGA+AGG - chr5_3:10419114-10419133 None:intergenic 50.0%
CCTTCCAGTTGTAGATGCTG+AGG + chr5_3:10419111-10419130 Msa0797980:CDS 50.0%
CTACCCTCAGCATCTACAAC+TGG - chr5_3:10419118-10419137 None:intergenic 50.0%
ACACAGGCAAGTGGAGAGTG+AGG + chr5_3:10414445-10414464 Msa0797980:five_prime_UTR 55.0%
GAAAATAGGACGGGGAGTGG+CGG - chr5_3:10414666-10414685 None:intergenic 55.0%
! GCGGCGCGTGGATTGAAAAT+AGG - chr5_3:10414680-10414699 None:intergenic 55.0%
!! GTGGAAGCATCGGAAAGCGA+CGG - chr5_3:10414702-10414721 None:intergenic 55.0%
GGCTTTGCTAACTAGGGGTC+CGG - chr5_3:10415147-10415166 None:intergenic 55.0%
GGGGTTCGGCTTTGCTAACT+AGG - chr5_3:10415154-10415173 None:intergenic 55.0%
TGTTGGAAGGGGGAGGGATA+GGG - chr5_3:10417905-10417924 None:intergenic 55.0%
TTGTTGGAAGGGGGAGGGAT+AGG - chr5_3:10417906-10417925 None:intergenic 55.0%
!! TGAGCTTGTTGGAAGGGGGA+GGG - chr5_3:10417911-10417930 None:intergenic 55.0%
GACAGCTGGAGTGTGACCTT+GGG - chr5_3:10418318-10418337 None:intergenic 55.0%
CTGTCCAGTCCTAAGCGTGA+TGG + chr5_3:10418333-10418352 Msa0797980:intron 55.0%
ACGTCCATCACGCTTAGGAC+TGG - chr5_3:10418340-10418359 None:intergenic 55.0%
GCTGAGTAAGACCAACGGGA+AGG + chr5_3:10418810-10418829 Msa0797980:CDS 55.0%
TTCACCGATCACCTTCCCGT+TGG - chr5_3:10418824-10418843 None:intergenic 55.0%
GCGAACAACCATAGGAGCAG+TGG - chr5_3:10418854-10418873 None:intergenic 55.0%
GTGGTCTCGCGAACAACCAT+AGG - chr5_3:10418862-10418881 None:intergenic 55.0%
TCGCGAGACCACCAATCTTG+AGG + chr5_3:10418870-10418889 Msa0797980:CDS 55.0%
CGCGGTACAACACAGGCAAG+TGG + chr5_3:10414436-10414455 Msa0797980:five_prime_UTR 60.0%
! GCGGAGGAGAGTGTAGGGAA+AGG - chr5_3:10414647-10414666 None:intergenic 60.0%
! GAGTGGCGGAGGAGAGTGTA+GGG - chr5_3:10414652-10414671 None:intergenic 60.0%
!! GAAGCATCGGAAAGCGACGG+CGG - chr5_3:10414699-10414718 None:intergenic 60.0%
! GAGCGGAGGAGTGGAAGCAT+CGG - chr5_3:10414712-10414731 None:intergenic 60.0%
!! CTGAGCTTGTTGGAAGGGGG+AGG - chr5_3:10417912-10417931 None:intergenic 60.0%
GGACAGCTGGAGTGTGACCT+TGG - chr5_3:10418319-10418338 None:intergenic 60.0%
CACGCTTAGGACTGGACAGC+TGG - chr5_3:10418332-10418351 None:intergenic 60.0%
GTAAATGAGGCAGCACGGGG+AGG - chr5_3:10418425-10418444 None:intergenic 60.0%
! GGAGTGGCGGAGGAGAGTGT+AGG - chr5_3:10414653-10414672 None:intergenic 65.0%
AATAGGACGGGGAGTGGCGG+AGG - chr5_3:10414663-10414682 None:intergenic 65.0%
! CGGAAAGCGACGGCGGCGCG+TGG - chr5_3:10414692-10414711 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 10414421 10419597 10414421 ID=Msa0797980;Name=Msa0797980
chr5_3 mRNA 10414421 10419597 10414421 ID=Msa0797980-mRNA-1;Parent=Msa0797980;Name=Msa0797980-mRNA-1;_AED=0.09;_eAED=0.09;_QI=205|0.85|0.75|1|0.71|0.75|8|291|248
chr5_3 exon 10414421 10414796 10414421 ID=Msa0797980-mRNA-1:exon:4373;Parent=Msa0797980-mRNA-1
chr5_3 exon 10416259 10416346 10416259 ID=Msa0797980-mRNA-1:exon:4374;Parent=Msa0797980-mRNA-1
chr5_3 exon 10416468 10416620 10416468 ID=Msa0797980-mRNA-1:exon:4375;Parent=Msa0797980-mRNA-1
chr5_3 exon 10417386 10417418 10417386 ID=Msa0797980-mRNA-1:exon:4376;Parent=Msa0797980-mRNA-1
chr5_3 exon 10417605 10417657 10417605 ID=Msa0797980-mRNA-1:exon:4377;Parent=Msa0797980-mRNA-1
chr5_3 exon 10418787 10418902 10418787 ID=Msa0797980-mRNA-1:exon:4378;Parent=Msa0797980-mRNA-1
chr5_3 exon 10419084 10419141 10419084 ID=Msa0797980-mRNA-1:exon:4379;Parent=Msa0797980-mRNA-1
chr5_3 exon 10419232 10419597 10419232 ID=Msa0797980-mRNA-1:exon:4380;Parent=Msa0797980-mRNA-1
chr5_3 five_prime_UTR 10414421 10414625 10414421 ID=Msa0797980-mRNA-1:five_prime_utr;Parent=Msa0797980-mRNA-1
chr5_3 CDS 10414626 10414796 10414626 ID=Msa0797980-mRNA-1:cds;Parent=Msa0797980-mRNA-1
chr5_3 CDS 10416259 10416346 10416259 ID=Msa0797980-mRNA-1:cds;Parent=Msa0797980-mRNA-1
chr5_3 CDS 10416468 10416620 10416468 ID=Msa0797980-mRNA-1:cds;Parent=Msa0797980-mRNA-1
chr5_3 CDS 10417386 10417418 10417386 ID=Msa0797980-mRNA-1:cds;Parent=Msa0797980-mRNA-1
chr5_3 CDS 10417605 10417657 10417605 ID=Msa0797980-mRNA-1:cds;Parent=Msa0797980-mRNA-1
chr5_3 CDS 10418787 10418902 10418787 ID=Msa0797980-mRNA-1:cds;Parent=Msa0797980-mRNA-1
chr5_3 CDS 10419084 10419141 10419084 ID=Msa0797980-mRNA-1:cds;Parent=Msa0797980-mRNA-1
chr5_3 CDS 10419232 10419306 10419232 ID=Msa0797980-mRNA-1:cds;Parent=Msa0797980-mRNA-1
chr5_3 three_prime_UTR 10419307 10419597 10419307 ID=Msa0797980-mRNA-1:three_prime_utr;Parent=Msa0797980-mRNA-1
Gene Sequence

>Msa0797980

ATGGACTCGCTCACTCTTCCTTTCCCTACACTCTCCTCCGCCACTCCCCGTCCTATTTTCAATCCACGCGCCGCCGTCGCTTTCCGATGCTTCCACTCCTCCGCTCATTTTTCAAAGCTTCGTGGCTCCCCGCTTTTTGCTGCTAACACTCTCACCGCTAATTCCGTTCCGCCAAAAAATGGGGTCTACACCGTCGGTGACTTTATGACAAAGAAAGATGAGTTACATACAGTGAAGCCCACAACAACTGTGGATGAAGCTTTGGATTCTCTTGTTGAGCACAGAATAACTGGTTTTCCCGTGATTGATGATAACTGGAAGCTAGTGAGTTATGCCTATCCATTTTCTCTAGTATATCTATTGATAAAACTTGTGGTTTTCCATATATCATTGCTCTTTCCATATTCAGTTTATTACGACCTGTTAGCTCTGGACTCCATTTCAGGTCAAGGGCAAACAGATAACAGCTTGTTTCCAGATGTTGACAGTACTTGGAAAACTTTCAATGAAGTTCAGAGATTGCTGAGTAAGACCAACGGGAAGGTGATCGGTGAATTGATGACCACTGCTCCTATGGTTGTTCGCGAGACCACCAATCTTGAGGATGCTGCTAGATTGTTGCTGGAAACAAAATTTCGACGCCTTCCAGTTGTAGATGCTGAGGGTAGATTGGTTGGGATTATCACTAGAGGAAATGTTGTAAGAGCTGCGCTTCAAATGAAACGAGACAGCCAAAAGAAAGCATGA

Protein sequence

>Msa0797980

MDSLTLPFPTLSSATPRPIFNPRAAVAFRCFHSSAHFSKLRGSPLFAANTLTANSVPPKNGVYTVGDFMTKKDELHTVKPTTTVDEALDSLVEHRITGFPVIDDNWKLVSYAYPFSLVYLLIKLVVFHISLLFPYSVYYDLLALDSISGQGQTDNSLFPDVDSTWKTFNEVQRLLSKTNGKVIGELMTTAPMVVRETTNLEDAARLLLETKFRRLPVVDAEGRLVGIITRGNVVRAALQMKRDSQKKA*