AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0850480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0850480 MtrunA17_Chr5g0425711 94.987 379 19 0 1 379 1 379 0.0 755
Msa0850480 MtrunA17_Chr3g0115661 71.965 346 87 4 30 373 24 361 0.0 515
Msa0850480 MtrunA17_Chr8g0382441 65.075 335 111 3 44 376 32 362 2.10e-157 447
Msa0850480 MtrunA17_Chr4g0056481 52.410 332 136 2 68 377 57 388 2.00e-124 364
Msa0850480 MtrunA17_Chr4g0018441 54.878 328 126 2 72 377 59 386 9.78e-122 357
Msa0850480 MtrunA17_Chr3g0079281 53.191 329 128 3 69 374 62 387 5.33e-119 350
Msa0850480 MtrunA17_Chr3g0126491 51.220 287 129 1 97 372 69 355 1.31e-102 307
Msa0850480 MtrunA17_Chr8g0347141 48.432 287 135 3 97 371 25 310 6.00e-97 291
Msa0850480 MtrunA17_Chr4g0018781 42.045 88 50 1 88 174 21 108 2.19e-13 65.9
Msa0850480 MtrunA17_Chr4g0018791 48.387 62 31 1 254 314 2 63 8.65e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0850480 AT1G78090.1 59.740 385 128 6 1 373 1 370 8.36e-156 443
Msa0850480 AT5G10100.3 62.275 334 120 2 46 375 37 368 5.12e-151 431
Msa0850480 AT5G10100.1 62.275 334 120 2 46 375 48 379 6.23e-151 431
Msa0850480 AT5G65140.1 61.254 351 130 3 24 371 20 367 6.89e-151 431
Msa0850480 AT4G39770.1 63.551 321 112 2 56 374 30 347 1.58e-150 429
Msa0850480 AT2G22190.1 60.870 345 131 2 28 372 10 350 1.40e-149 427
Msa0850480 AT1G78090.2 60.108 371 121 6 1 359 1 356 1.43e-149 427
Msa0850480 AT1G35910.1 63.363 333 110 4 51 375 39 367 3.62e-149 426
Msa0850480 AT1G22210.1 63.782 312 103 3 69 373 9 317 1.27e-145 416
Msa0850480 AT4G39770.2 64.379 306 104 2 56 359 30 332 1.34e-144 413
Msa0850480 AT2G22190.2 61.446 332 124 2 28 359 10 337 1.76e-144 414
Msa0850480 AT5G10100.2 62.579 318 113 2 46 359 37 352 5.70e-144 412
Msa0850480 AT5G10100.4 57.485 334 116 3 46 375 48 359 8.86e-132 382
Msa0850480 AT5G65140.3 58.104 327 130 4 6 328 1 324 3.18e-129 374
Msa0850480 AT5G51460.2 55.452 321 126 4 69 372 62 382 1.73e-121 357
Msa0850480 AT5G51460.4 55.452 321 126 4 69 372 62 382 1.73e-121 357
Msa0850480 AT4G22590.1 54.180 323 129 3 71 374 50 372 1.43e-120 354
Msa0850480 AT5G51460.1 55.280 322 126 4 69 372 62 383 1.05e-119 352
Msa0850480 AT5G51460.5 55.280 322 126 4 69 372 62 383 1.05e-119 352
Msa0850480 AT5G51460.3 55.280 322 126 4 69 372 62 383 1.05e-119 352
Msa0850480 AT4G12430.1 54.037 322 135 2 68 376 44 365 2.90e-117 345
Msa0850480 AT5G65140.2 59.155 284 110 3 24 304 20 300 8.03e-113 332

Find 103 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCCCTTGTCCCATTTAA+TGG 0.107672 5_4:+39680346 None:intergenic
AAATTCGACCAACCATTAAA+TGG 0.184228 5_4:-39680358 Msa0850480:CDS
AACTTCAGTGTCTGAATTAA+TGG 0.186430 5_4:-39681881 Msa0850480:CDS
TTTATGCCTCATTTGCAATA+TGG 0.223415 5_4:-39679456 Msa0850480:three_prime_UTR
TTGACACCGACCCAAGAATT+TGG 0.244483 5_4:-39679679 Msa0850480:three_prime_UTR
GGCATCCCTTGTTTGAAAAT+AGG 0.253122 5_4:-39679638 Msa0850480:three_prime_UTR
TTACTCATGTAGGCTTTATC+TGG 0.261967 5_4:+39681378 None:intergenic
AAGCCATGGGATGGATATTA+AGG 0.269464 5_4:-39681049 Msa0850480:CDS
AGGAATCTATAAATGAGTTT+AGG 0.278275 5_4:-39679705 Msa0850480:three_prime_UTR
CCTTGTGTTAGCTTTAGTTT+TGG 0.279314 5_4:+39680395 None:intergenic
AATTCAGACACTGAAGTTCT+TGG 0.288315 5_4:+39681886 None:intergenic
TTAGTGCTTCTCCTATTTGT+TGG 0.289846 5_4:+39681024 None:intergenic
GGAATCTATAAATGAGTTTA+GGG 0.305631 5_4:-39679704 Msa0850480:three_prime_UTR
GTGACTTTCCCAACATATTC+TGG 0.318648 5_4:+39681971 None:intergenic
GAGAAAACGAAGTGTGTTCC+AGG 0.327309 5_4:-39680711 Msa0850480:CDS
TTATGCCTCATTTGCAATAT+GGG 0.331313 5_4:-39679455 Msa0850480:three_prime_UTR
CGCAATAGGGGCCAAGGGTG+TGG 0.335378 5_4:-39679955 Msa0850480:CDS
TAAAGCCTACATGAGTAAAA+AGG 0.339761 5_4:-39681373 Msa0850480:intron
CTACCCCTTGACCAAATTCT+TGG 0.346499 5_4:+39679668 None:intergenic
GGCTTACAGTCCAATGAGTT+TGG 0.362955 5_4:+39681701 None:intergenic
AAACAATCTCATTAAGCCTT+TGG 0.363708 5_4:-39681827 Msa0850480:CDS
TTATCTGGATCTGCTACAAT+TGG 0.368355 5_4:+39681393 None:intergenic
CAAATAATGTACAATACAAA+TGG 0.375691 5_4:-39681459 Msa0850480:CDS
AATGTATTTCCAATCTATAT+TGG 0.376405 5_4:-39680157 Msa0850480:CDS
CTTGAATTTCTTACCTCAGA+TGG 0.386100 5_4:+39679877 None:intergenic
TGTAGCTATTTAGCTTTGTA+AGG 0.388676 5_4:-39681095 Msa0850480:intron
GCTATTTAGCTTTGTAAGGT+TGG 0.390975 5_4:-39681091 Msa0850480:CDS
GATTGTGAATGAGAGGTTAA+TGG 0.392429 5_4:-39681944 Msa0850480:CDS
TTTCCCACAGCCATTGTTAG+TGG 0.400255 5_4:-39681224 Msa0850480:CDS
GAATTAATGGCTTTGTTTGG+TGG 0.404929 5_4:-39681868 Msa0850480:CDS
TTGCCAATTTCAACTTGAAA+AGG 0.409018 5_4:-39679364 Msa0850480:three_prime_UTR
TCTGAATTAATGGCTTTGTT+TGG 0.409233 5_4:-39681871 Msa0850480:CDS
CCCTTGTCCCATTTAATGGT+TGG 0.411248 5_4:+39680350 None:intergenic
AATTAATGGCTTTGTTTGGT+GGG 0.420794 5_4:-39681867 Msa0850480:CDS
TATTTAGAGTTGGGCACCAT+TGG 0.421897 5_4:-39680450 Msa0850480:intron
GGGTCAGGTTTATAAGATCT+TGG 0.424468 5_4:-39680736 Msa0850480:intron
GAGAAGAAGAACAAAGAGAG+AGG 0.440385 5_4:+39682063 None:intergenic
TATCTGGATCTGCTACAATT+GGG 0.442252 5_4:+39681394 None:intergenic
GCAATAGGGGCCAAGGGTGT+GGG 0.454198 5_4:-39679954 Msa0850480:CDS
ATATTAAGGGTCCAACAAAT+AGG 0.455858 5_4:-39681035 Msa0850480:CDS
CGATCGTCACCAATATAGAT+TGG 0.456578 5_4:+39680148 None:intergenic
AACCGATGAAGATGCTTTCA+AGG 0.459255 5_4:-39680125 Msa0850480:intron
TGGTCAAGGGGTAGTTCAAA+TGG 0.461231 5_4:-39679659 Msa0850480:three_prime_UTR
ATAGAGAAGAACAGAGAGAT+GGG 0.461260 5_4:+39682091 None:intergenic
TACCCCTTGACCAAATTCTT+GGG 0.470345 5_4:+39679669 None:intergenic
TCTTGGTAAAACATTAGAGT+TGG 0.472981 5_4:+39681903 None:intergenic
AAAATCGTGACCAAACTCAT+TGG 0.474132 5_4:-39681711 Msa0850480:CDS
GCTACGAACCTCATTGATCA+TGG 0.476130 5_4:+39680861 None:intergenic
GATAGAGAAGAACAGAGAGA+TGG 0.479405 5_4:+39682090 None:intergenic
ATGACTAACCAGAATATGTT+GGG 0.482279 5_4:-39681979 Msa0850480:CDS
AATTCGACCAACCATTAAAT+GGG 0.483720 5_4:-39680357 Msa0850480:CDS
TTATACTATGCTGGAAGCCA+TGG 0.484718 5_4:-39681063 Msa0850480:CDS
CCATTAAATGGGACAAGGGA+AGG 0.493371 5_4:-39680346 Msa0850480:CDS
AATGACTAACCAGAATATGT+TGG 0.502586 5_4:-39681980 Msa0850480:CDS
TTGGCTGAATTATACTATGC+TGG 0.505769 5_4:-39681072 Msa0850480:CDS
AAATAATGTACAATACAAAT+GGG 0.510120 5_4:-39681458 Msa0850480:CDS
TTAGATGAGAGTGACATTGA+AGG 0.514001 5_4:-39681261 Msa0850480:intron
AATGTCCCATATTGCAAATG+AGG 0.515183 5_4:+39679450 None:intergenic
GAAGTGTGTTCCAGGGGCTA+TGG 0.519970 5_4:-39680703 Msa0850480:CDS
AGCCATGGGATGGATATTAA+GGG 0.535930 5_4:-39681048 Msa0850480:CDS
TACCTTGAAAGCATCTTCAT+CGG 0.538497 5_4:+39680123 None:intergenic
AACACAAGGGAGAAAAGTGT+TGG 0.542726 5_4:-39680381 Msa0850480:CDS
AGTAGGAGAAGAAGCTCTCA+TGG 0.543615 5_4:+39681753 None:intergenic
CTCACAAGTTGTAGAGAGCT+AGG 0.543818 5_4:-39679725 Msa0850480:exon
TTATACATTGAAACAAGAAA+AGG 0.544195 5_4:+39679537 None:intergenic
TTGAACATGTTCAAAGCAGA+AGG 0.546219 5_4:+39681483 None:intergenic
CACACGTTTGCATGCGCATG+CGG 0.547592 5_4:-39679497 Msa0850480:three_prime_UTR
GACCCTTAATATCCATCCCA+TGG 0.547681 5_4:+39681046 None:intergenic
GTGTGTTCCAGGGGCTATGG+TGG 0.549508 5_4:-39680700 Msa0850480:CDS
TCTTCCACTAACAATGGCTG+TGG 0.554269 5_4:+39681220 None:intergenic
ATACAAGAATCCCACACCCT+TGG 0.561032 5_4:+39679944 None:intergenic
AGAAGAAGAACAAAGAGAGA+GGG 0.561584 5_4:+39682064 None:intergenic
ATCTGGATCTGCTACAATTG+GGG 0.562431 5_4:+39681395 None:intergenic
AAGCTTACTTGTTCAGCCAA+TGG 0.567677 5_4:+39680434 None:intergenic
CATTAAATGGGACAAGGGAA+GGG 0.571676 5_4:-39680345 Msa0850480:CDS
ACATGTTCAAAGCAGAAGGA+TGG 0.573560 5_4:+39681487 None:intergenic
TGATCATTATCATCTTCCAA+AGG 0.579315 5_4:+39681811 None:intergenic
ATGGGCAAGAATTCACTAGC+AGG 0.580507 5_4:+39680880 None:intergenic
GATTCGTGTCTGGTTCGAGT+AGG 0.581250 5_4:+39681736 None:intergenic
CTATGCTGGAAGCCATGGGA+TGG 0.581523 5_4:-39681058 Msa0850480:CDS
CCTTGACCAAATTCTTGGGT+CGG 0.585466 5_4:+39679673 None:intergenic
CCAAAACTAAAGCTAACACA+AGG 0.588195 5_4:-39680395 Msa0850480:CDS
CGACCCAAGAATTTGGTCAA+GGG 0.600225 5_4:-39679672 Msa0850480:three_prime_UTR
CTACGAACCTCATTGATCAT+GGG 0.600560 5_4:+39680862 None:intergenic
TCAGGTTTATAAGATCTTGG+TGG 0.601263 5_4:-39680733 Msa0850480:intron
TATACTATGCTGGAAGCCAT+GGG 0.609558 5_4:-39681062 Msa0850480:CDS
ACCAACCATTAAATGGGACA+AGG 0.627155 5_4:-39680351 Msa0850480:CDS
CACTTTGCAAGATCCATCTG+AGG 0.628755 5_4:-39679890 Msa0850480:intron
TAAGCATCTTCCACTAACAA+TGG 0.635138 5_4:+39681214 None:intergenic
AGAAAACGAAGTGTGTTCCA+GGG 0.637437 5_4:-39680710 Msa0850480:CDS
ATTTCAGGGTAATAATGATG+AGG 0.638286 5_4:-39680914 Msa0850480:intron
CTTCCACTAACAATGGCTGT+GGG 0.639958 5_4:+39681221 None:intergenic
GACCCAAGAATTTGGTCAAG+GGG 0.641032 5_4:-39679671 Msa0850480:three_prime_UTR
ATTCTTGCCCATGATCAATG+AGG 0.645083 5_4:-39680869 Msa0850480:intron
CCGACCCAAGAATTTGGTCA+AGG 0.645146 5_4:-39679673 Msa0850480:three_prime_UTR
TATTGTACTTAACGTACGTG+TGG 0.645388 5_4:-39679410 Msa0850480:three_prime_UTR
GAAGATGATAATGATCACAA+AGG 0.653543 5_4:-39681805 Msa0850480:CDS
CACGTGTGATTGTGAATGAG+AGG 0.660978 5_4:-39681951 Msa0850480:CDS
GAGCAACTAAAGTTAACGCG+TGG 0.664842 5_4:-39681783 Msa0850480:CDS
GAAAACGAAGTGTGTTCCAG+GGG 0.667596 5_4:-39680709 Msa0850480:CDS
CCAACCATTAAATGGGACAA+GGG 0.680428 5_4:-39680350 Msa0850480:CDS
CAAAACTAAAGCTAACACAA+GGG 0.690741 5_4:-39680394 Msa0850480:CDS
TAGTGGAAGATGCTTAGACA+AGG 0.695626 5_4:-39681207 Msa0850480:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAATAAAATAAATT+AGG + chr5_4:39680697-39680716 None:intergenic 0.0%
!!! TTTTATTTTATTTTTATATT+TGG - chr5_4:39680703-39680722 Msa0850480:CDS 0.0%
!!! TTTATTTTATTTTTATATTT+GGG - chr5_4:39680704-39680723 Msa0850480:CDS 0.0%
!! AATTAATTCCATTAATAAAT+TGG - chr5_4:39681204-39681223 Msa0850480:intron 10.0%
!!! TAATTTTTATAAAGTTAGTA+AGG + chr5_4:39681374-39681393 None:intergenic 10.0%
!! AATAAAAATGTTAATATATG+TGG + chr5_4:39681412-39681431 None:intergenic 10.0%
!!! TTCATTTAAATTTTGTATAT+AGG - chr5_4:39681661-39681680 Msa0850480:intron 10.0%
!!! TTCCATAATTTTAATTTTTA+GGG - chr5_4:39681863-39681882 Msa0850480:CDS 10.0%
!! AAATAATGTACAATACAAAT+GGG - chr5_4:39680002-39680021 Msa0850480:intron 15.0%
!!! TTTAAAGTATTTCTATACTT+AGG - chr5_4:39680870-39680889 Msa0850480:CDS 15.0%
!!! ATTTTGTTTTATTTAGAGTT+GGG - chr5_4:39681001-39681020 Msa0850480:intron 15.0%
!! TATTTGTACCAATTTATTAA+TGG + chr5_4:39681215-39681234 None:intergenic 15.0%
!! AATTTGGATATGAATAATAT+AGG - chr5_4:39681477-39681496 Msa0850480:CDS 15.0%
!!! TTTAAATTTTGTATATAGGT+TGG - chr5_4:39681665-39681684 Msa0850480:intron 15.0%
!!! GTTCCATAATTTTAATTTTT+AGG - chr5_4:39681862-39681881 Msa0850480:CDS 15.0%
!! GTTATGATTCTAAATTATGT+CGG - chr5_4:39679818-39679837 Msa0850480:intron 20.0%
!! CAAATAATGTACAATACAAA+TGG - chr5_4:39680001-39680020 Msa0850480:intron 20.0%
!! ATTTCATCCATTATTATTTC+AGG - chr5_4:39680531-39680550 Msa0850480:intron 20.0%
!! TTTCATCCATTATTATTTCA+GGG - chr5_4:39680532-39680551 Msa0850480:intron 20.0%
!! TTATTACCCTGAAATAATAA+TGG + chr5_4:39680541-39680560 None:intergenic 20.0%
!! ATGGTGTAACTAAAAAAATT+TGG + chr5_4:39680646-39680665 None:intergenic 20.0%
!! AAATAAAATAAATTAGGCAC+AGG + chr5_4:39680691-39680710 None:intergenic 20.0%
!!! TTTATTTTTATATTTGGGTC+AGG - chr5_4:39680709-39680728 Msa0850480:CDS 20.0%
!!! ATAACAAAGTTTCTAAAACA+TGG - chr5_4:39680974-39680993 Msa0850480:intron 20.0%
!!! CATTTTGTTTTATTTAGAGT+TGG - chr5_4:39681000-39681019 Msa0850480:intron 20.0%
!! AATGTATTTCCAATCTATAT+TGG - chr5_4:39681303-39681322 Msa0850480:intron 20.0%
!!! TATTTCCTATTTTCAAACAA+GGG + chr5_4:39681830-39681849 None:intergenic 20.0%
!! GTCCCTAAAAATTAAAATTA+TGG + chr5_4:39681868-39681887 None:intergenic 20.0%
!! AAAGAAAAAGAGAATCTATT+TGG + chr5_4:39681899-39681918 None:intergenic 20.0%
!! TTATACATTGAAACAAGAAA+AGG + chr5_4:39681926-39681945 None:intergenic 20.0%
!!! TTTTTGGTGTGTAAGTAATA+AGG + chr5_4:39679783-39679802 None:intergenic 25.0%
! GCAAGTTAGAATTATGATTA+CGG - chr5_4:39679895-39679914 Msa0850480:CDS 25.0%
!! ATAGTTTTTCTTGACTATGA+TGG - chr5_4:39680034-39680053 Msa0850480:intron 25.0%
! GTGTAACTAAAAAAATTTGG+TGG + chr5_4:39680643-39680662 None:intergenic 25.0%
! ATAAAACACGTTAATGATGA+TGG - chr5_4:39680918-39680937 Msa0850480:intron 25.0%
! TAAAACACGTTAATGATGAT+GGG - chr5_4:39680919-39680938 Msa0850480:intron 25.0%
! AGGAATCTATAAATGAGTTT+AGG - chr5_4:39681755-39681774 Msa0850480:CDS 25.0%
! GGAATCTATAAATGAGTTTA+GGG - chr5_4:39681756-39681775 Msa0850480:CDS 25.0%
!! CTATTTCCTATTTTCAAACA+AGG + chr5_4:39681831-39681850 None:intergenic 25.0%
AATGACTAACCAGAATATGT+TGG - chr5_4:39679480-39679499 Msa0850480:three_prime_UTR 30.0%
ATGACTAACCAGAATATGTT+GGG - chr5_4:39679481-39679500 Msa0850480:three_prime_UTR 30.0%
TCTTGGTAAAACATTAGAGT+TGG + chr5_4:39679560-39679579 None:intergenic 30.0%
AACTTCAGTGTCTGAATTAA+TGG - chr5_4:39679579-39679598 Msa0850480:three_prime_UTR 30.0%
!! TCTGAATTAATGGCTTTGTT+TGG - chr5_4:39679589-39679608 Msa0850480:three_prime_UTR 30.0%
!! AATTAATGGCTTTGTTTGGT+GGG - chr5_4:39679593-39679612 Msa0850480:three_prime_UTR 30.0%
!!! TAATGAGATTGTTTTTGTGC+TGG + chr5_4:39679627-39679646 None:intergenic 30.0%
AAACAATCTCATTAAGCCTT+TGG - chr5_4:39679633-39679652 Msa0850480:three_prime_UTR 30.0%
TGATCATTATCATCTTCCAA+AGG + chr5_4:39679652-39679671 None:intergenic 30.0%
! GAAGATGATAATGATCACAA+AGG - chr5_4:39679655-39679674 Msa0850480:three_prime_UTR 30.0%
!!! CTAGTCAAACAGTCTTTTTT+TGG + chr5_4:39679799-39679818 None:intergenic 30.0%
TGCTATACTACAGATAAATG+TGG + chr5_4:39679844-39679863 None:intergenic 30.0%
GTTAGAATTATGATTACGGT+TGG - chr5_4:39679899-39679918 Msa0850480:CDS 30.0%
TAAAGCCTACATGAGTAAAA+AGG - chr5_4:39680087-39680106 Msa0850480:intron 30.0%
! ACAAACCTTTTTACTCATGT+AGG + chr5_4:39680095-39680114 None:intergenic 30.0%
! TTTTCACTAACGTTTGATTC+TGG - chr5_4:39680120-39680139 Msa0850480:intron 30.0%
!! TGTAGCTATTTAGCTTTGTA+AGG - chr5_4:39680365-39680384 Msa0850480:CDS 30.0%
ATATTAAGGGTCCAACAAAT+AGG - chr5_4:39680425-39680444 Msa0850480:CDS 30.0%
ATTTCAGGGTAATAATGATG+AGG - chr5_4:39680546-39680565 Msa0850480:intron 30.0%
!!! CTTGTGTTAGCTTTAGTTTT+GGG + chr5_4:39681067-39681086 None:intergenic 30.0%
CAAAACTAAAGCTAACACAA+GGG - chr5_4:39681066-39681085 Msa0850480:CDS 30.0%
AAATTCGACCAACCATTAAA+TGG - chr5_4:39681102-39681121 Msa0850480:intron 30.0%
AATTCGACCAACCATTAAAT+GGG - chr5_4:39681103-39681122 Msa0850480:intron 30.0%
! TAATATAGGTTTTGCGCAAT+AGG - chr5_4:39681491-39681510 Msa0850480:CDS 30.0%
! AATATAGGTTTTGCGCAATA+GGG - chr5_4:39681492-39681511 Msa0850480:CDS 30.0%
!! TATAGGTTGGACAATTTTTG+CGG - chr5_4:39681678-39681697 Msa0850480:intron 30.0%
TTTATGCCTCATTTGCAATA+TGG - chr5_4:39682004-39682023 Msa0850480:five_prime_UTR 30.0%
TTATGCCTCATTTGCAATAT+GGG - chr5_4:39682005-39682024 Msa0850480:five_prime_UTR 30.0%
TTGCCAATTTCAACTTGAAA+AGG - chr5_4:39682096-39682115 Msa0850480:five_prime_UTR 30.0%
ATAGAGAAGAACAGAGAGAT+GGG + chr5_4:39679372-39679391 None:intergenic 35.0%
AGAAGAAGAACAAAGAGAGA+GGG + chr5_4:39679399-39679418 None:intergenic 35.0%
GATTGTGAATGAGAGGTTAA+TGG - chr5_4:39679516-39679535 Msa0850480:three_prime_UTR 35.0%
AATTCAGACACTGAAGTTCT+TGG + chr5_4:39679577-39679596 None:intergenic 35.0%
!! GAATTAATGGCTTTGTTTGG+TGG - chr5_4:39679592-39679611 Msa0850480:three_prime_UTR 35.0%
AAAATCGTGACCAAACTCAT+TGG - chr5_4:39679749-39679768 Msa0850480:CDS 35.0%
TTGAACATGTTCAAAGCAGA+AGG + chr5_4:39679980-39679999 None:intergenic 35.0%
TATCTGGATCTGCTACAATT+GGG + chr5_4:39680069-39680088 None:intergenic 35.0%
TTATCTGGATCTGCTACAAT+TGG + chr5_4:39680070-39680089 None:intergenic 35.0%
! TTACTCATGTAGGCTTTATC+TGG + chr5_4:39680085-39680104 None:intergenic 35.0%
TTAGATGAGAGTGACATTGA+AGG - chr5_4:39680199-39680218 Msa0850480:intron 35.0%
TAAGCATCTTCCACTAACAA+TGG + chr5_4:39680249-39680268 None:intergenic 35.0%
!! GCTATTTAGCTTTGTAAGGT+TGG - chr5_4:39680369-39680388 Msa0850480:CDS 35.0%
TTGGCTGAATTATACTATGC+TGG - chr5_4:39680388-39680407 Msa0850480:CDS 35.0%
TTAGTGCTTCTCCTATTTGT+TGG + chr5_4:39680439-39680458 None:intergenic 35.0%
CTCTATCCAAATTATTGCGA+CGG - chr5_4:39680477-39680496 Msa0850480:intron 35.0%
TAATCTCCGTCGCAATAATT+TGG + chr5_4:39680486-39680505 None:intergenic 35.0%
TTAGTTACACCATTCCCATT+AGG - chr5_4:39680653-39680672 Msa0850480:CDS 35.0%
GGTAAAATCCCATACCTAAT+GGG + chr5_4:39680670-39680689 None:intergenic 35.0%
AGGTAAAATCCCATACCTAA+TGG + chr5_4:39680671-39680690 None:intergenic 35.0%
TCAGGTTTATAAGATCTTGG+TGG - chr5_4:39680727-39680746 Msa0850480:CDS 35.0%
!!! CCTTGTGTTAGCTTTAGTTT+TGG + chr5_4:39681068-39681087 None:intergenic 35.0%
CCAAAACTAAAGCTAACACA+AGG - chr5_4:39681065-39681084 Msa0850480:CDS 35.0%
! GAATTTTTGCTAGAGTCACT+TGG - chr5_4:39681143-39681162 Msa0850480:intron 35.0%
!! TACCTTGAAAGCATCTTCAT+CGG + chr5_4:39681340-39681359 None:intergenic 35.0%
! GCTATGCTAACTTGTCAATT+TGG - chr5_4:39681461-39681480 Msa0850480:CDS 35.0%
! ATATAGGTTTTGCGCAATAG+GGG - chr5_4:39681493-39681512 Msa0850480:CDS 35.0%
CTTGAATTTCTTACCTCAGA+TGG + chr5_4:39681586-39681605 None:intergenic 35.0%
AATGTCCCATATTGCAAATG+AGG + chr5_4:39682013-39682032 None:intergenic 35.0%
TATTGTACTTAACGTACGTG+TGG - chr5_4:39682050-39682069 Msa0850480:five_prime_UTR 35.0%
GATAGAGAAGAACAGAGAGA+TGG + chr5_4:39679373-39679392 None:intergenic 40.0%
GAGAAGAAGAACAAAGAGAG+AGG + chr5_4:39679400-39679419 None:intergenic 40.0%
GTGACTTTCCCAACATATTC+TGG + chr5_4:39679492-39679511 None:intergenic 40.0%
!! ACGATTTTCTGATTCGTGTC+TGG + chr5_4:39679737-39679756 None:intergenic 40.0%
ACAGACAAATGTGACTGATG+AGG - chr5_4:39679866-39679885 Msa0850480:intron 40.0%
ACATGTTCAAAGCAGAAGGA+TGG + chr5_4:39679976-39679995 None:intergenic 40.0%
ATCTGGATCTGCTACAATTG+GGG + chr5_4:39680068-39680087 None:intergenic 40.0%
TAGTGGAAGATGCTTAGACA+AGG - chr5_4:39680253-39680272 Msa0850480:intron 40.0%
TTATACTATGCTGGAAGCCA+TGG - chr5_4:39680397-39680416 Msa0850480:CDS 40.0%
TATACTATGCTGGAAGCCAT+GGG - chr5_4:39680398-39680417 Msa0850480:CDS 40.0%
AAGCCATGGGATGGATATTA+AGG - chr5_4:39680411-39680430 Msa0850480:CDS 40.0%
AGCCATGGGATGGATATTAA+GGG - chr5_4:39680412-39680431 Msa0850480:CDS 40.0%
ATTCTTGCCCATGATCAATG+AGG - chr5_4:39680591-39680610 Msa0850480:intron 40.0%
CTACGAACCTCATTGATCAT+GGG + chr5_4:39680601-39680620 None:intergenic 40.0%
TACACCATTCCCATTAGGTA+TGG - chr5_4:39680658-39680677 Msa0850480:CDS 40.0%
ACACCATTCCCATTAGGTAT+GGG - chr5_4:39680659-39680678 Msa0850480:CDS 40.0%
AATCCCATACCTAATGGGAA+TGG + chr5_4:39680665-39680684 None:intergenic 40.0%
GGGTCAGGTTTATAAGATCT+TGG - chr5_4:39680724-39680743 Msa0850480:CDS 40.0%
AGAAAACGAAGTGTGTTCCA+GGG - chr5_4:39680750-39680769 Msa0850480:intron 40.0%
! TTTTCGCAACGTTGACGAAA+AGG - chr5_4:39680811-39680830 Msa0850480:intron 40.0%
CGTTGACGAAAAGGTAACAA+TGG - chr5_4:39680820-39680839 Msa0850480:intron 40.0%
! TATTTAGAGTTGGGCACCAT+TGG - chr5_4:39681010-39681029 Msa0850480:intron 40.0%
AAGCTTACTTGTTCAGCCAA+TGG + chr5_4:39681029-39681048 None:intergenic 40.0%
! AACACAAGGGAGAAAAGTGT+TGG - chr5_4:39681079-39681098 Msa0850480:CDS 40.0%
ACCAACCATTAAATGGGACA+AGG - chr5_4:39681109-39681128 Msa0850480:intron 40.0%
CCAACCATTAAATGGGACAA+GGG - chr5_4:39681110-39681129 Msa0850480:intron 40.0%
CATTAAATGGGACAAGGGAA+GGG - chr5_4:39681115-39681134 Msa0850480:intron 40.0%
CGATCGTCACCAATATAGAT+TGG + chr5_4:39681315-39681334 None:intergenic 40.0%
AACCGATGAAGATGCTTTCA+AGG - chr5_4:39681335-39681354 Msa0850480:intron 40.0%
! TGGACAATTTTTGCGGCATT+TGG - chr5_4:39681685-39681704 Msa0850480:intron 40.0%
! ACAATTTTTGCGGCATTTGG+TGG - chr5_4:39681688-39681707 Msa0850480:intron 40.0%
TACCCCTTGACCAAATTCTT+GGG + chr5_4:39681794-39681813 None:intergenic 40.0%
! GGCATCCCTTGTTTGAAAAT+AGG - chr5_4:39681822-39681841 Msa0850480:CDS 40.0%
CACGTGTGATTGTGAATGAG+AGG - chr5_4:39679509-39679528 Msa0850480:three_prime_UTR 45.0%
!!! GCTTTGTTTGGTGGGCTTTT+AGG - chr5_4:39679601-39679620 Msa0850480:three_prime_UTR 45.0%
GAGCAACTAAAGTTAACGCG+TGG - chr5_4:39679677-39679696 Msa0850480:three_prime_UTR 45.0%
AGTAGGAGAAGAAGCTCTCA+TGG + chr5_4:39679710-39679729 None:intergenic 45.0%
GGCTTACAGTCCAATGAGTT+TGG + chr5_4:39679762-39679781 None:intergenic 45.0%
TTTCCCACAGCCATTGTTAG+TGG - chr5_4:39680236-39680255 Msa0850480:intron 45.0%
CTTCCACTAACAATGGCTGT+GGG + chr5_4:39680242-39680261 None:intergenic 45.0%
TCTTCCACTAACAATGGCTG+TGG + chr5_4:39680243-39680262 None:intergenic 45.0%
GACCCTTAATATCCATCCCA+TGG + chr5_4:39680417-39680436 None:intergenic 45.0%
ATGGGCAAGAATTCACTAGC+AGG + chr5_4:39680583-39680602 None:intergenic 45.0%
GCTACGAACCTCATTGATCA+TGG + chr5_4:39680602-39680621 None:intergenic 45.0%
GAGAAAACGAAGTGTGTTCC+AGG - chr5_4:39680749-39680768 Msa0850480:intron 45.0%
GAAAACGAAGTGTGTTCCAG+GGG - chr5_4:39680751-39680770 Msa0850480:intron 45.0%
! TTATTTTCCACCATAGCCCC+TGG + chr5_4:39680770-39680789 None:intergenic 45.0%
CCCTTGTCCCATTTAATGGT+TGG + chr5_4:39681113-39681132 None:intergenic 45.0%
CCTTCCCTTGTCCCATTTAA+TGG + chr5_4:39681117-39681136 None:intergenic 45.0%
CCATTAAATGGGACAAGGGA+AGG - chr5_4:39681114-39681133 Msa0850480:intron 45.0%
ATACAAGAATCCCACACCCT+TGG + chr5_4:39681519-39681538 None:intergenic 45.0%
CACTTTGCAAGATCCATCTG+AGG - chr5_4:39681570-39681589 Msa0850480:intron 45.0%
!! TTTTGCGGCATTTGGTGGAT+TGG - chr5_4:39681693-39681712 Msa0850480:intron 45.0%
CTCACAAGTTGTAGAGAGCT+AGG - chr5_4:39681735-39681754 Msa0850480:CDS 45.0%
TTGACACCGACCCAAGAATT+TGG - chr5_4:39681781-39681800 Msa0850480:CDS 45.0%
CCTTGACCAAATTCTTGGGT+CGG + chr5_4:39681790-39681809 None:intergenic 45.0%
CGACCCAAGAATTTGGTCAA+GGG - chr5_4:39681788-39681807 Msa0850480:CDS 45.0%
GACCCAAGAATTTGGTCAAG+GGG - chr5_4:39681789-39681808 Msa0850480:CDS 45.0%
CTACCCCTTGACCAAATTCT+TGG + chr5_4:39681795-39681814 None:intergenic 45.0%
TGGTCAAGGGGTAGTTCAAA+TGG - chr5_4:39681801-39681820 Msa0850480:CDS 45.0%
!!! TATTTTATTTTTTAATATCT+AGG - chr5_4:39681264-39681283 Msa0850480:intron 5.0%
! GATTCGTGTCTGGTTCGAGT+AGG + chr5_4:39679727-39679746 None:intergenic 50.0%
! TTTTGCGCAATAGGGGCCAA+GGG - chr5_4:39681500-39681519 Msa0850480:intron 50.0%
CCGACCCAAGAATTTGGTCA+AGG - chr5_4:39681787-39681806 Msa0850480:CDS 50.0%
CTATGCTGGAAGCCATGGGA+TGG - chr5_4:39680402-39680421 Msa0850480:CDS 55.0%
GAAGTGTGTTCCAGGGGCTA+TGG - chr5_4:39680757-39680776 Msa0850480:intron 55.0%
! GTTTTGCGCAATAGGGGCCA+AGG - chr5_4:39681499-39681518 Msa0850480:intron 55.0%
CACACGTTTGCATGCGCATG+CGG - chr5_4:39681963-39681982 Msa0850480:CDS 55.0%
GTGTGTTCCAGGGGCTATGG+TGG - chr5_4:39680760-39680779 Msa0850480:intron 60.0%
! GCAATAGGGGCCAAGGGTGT+GGG - chr5_4:39681506-39681525 Msa0850480:intron 60.0%
CGCAATAGGGGCCAAGGGTG+TGG - chr5_4:39681505-39681524 Msa0850480:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 39679363 39682119 39679363 ID=Msa0850480;Name=Msa0850480
chr5_4 mRNA 39679363 39682119 39679363 ID=Msa0850480-mRNA-1;Parent=Msa0850480;Name=Msa0850480-mRNA-1;_AED=0.13;_eAED=0.13;_QI=118|1|1|1|1|1|10|371|379
chr5_4 exon 39679363 39679799 39679363 ID=Msa0850480-mRNA-1:exon:12606;Parent=Msa0850480-mRNA-1
chr5_4 exon 39679891 39679983 39679891 ID=Msa0850480-mRNA-1:exon:12605;Parent=Msa0850480-mRNA-1
chr5_4 exon 39680126 39680196 39680126 ID=Msa0850480-mRNA-1:exon:12604;Parent=Msa0850480-mRNA-1
chr5_4 exon 39680318 39680465 39680318 ID=Msa0850480-mRNA-1:exon:12603;Parent=Msa0850480-mRNA-1
chr5_4 exon 39680650 39680751 39680650 ID=Msa0850480-mRNA-1:exon:12602;Parent=Msa0850480-mRNA-1
chr5_4 exon 39680870 39680929 39680870 ID=Msa0850480-mRNA-1:exon:12601;Parent=Msa0850480-mRNA-1
chr5_4 exon 39681020 39681112 39681020 ID=Msa0850480-mRNA-1:exon:12600;Parent=Msa0850480-mRNA-1
chr5_4 exon 39681208 39681279 39681208 ID=Msa0850480-mRNA-1:exon:12599;Parent=Msa0850480-mRNA-1
chr5_4 exon 39681374 39681514 39681374 ID=Msa0850480-mRNA-1:exon:12598;Parent=Msa0850480-mRNA-1
chr5_4 exon 39681708 39682119 39681708 ID=Msa0850480-mRNA-1:exon:12597;Parent=Msa0850480-mRNA-1
chr5_4 five_prime_UTR 39682002 39682119 39682002 ID=Msa0850480-mRNA-1:five_prime_utr;Parent=Msa0850480-mRNA-1
chr5_4 CDS 39681708 39682001 39681708 ID=Msa0850480-mRNA-1:cds;Parent=Msa0850480-mRNA-1
chr5_4 CDS 39681374 39681514 39681374 ID=Msa0850480-mRNA-1:cds;Parent=Msa0850480-mRNA-1
chr5_4 CDS 39681208 39681279 39681208 ID=Msa0850480-mRNA-1:cds;Parent=Msa0850480-mRNA-1
chr5_4 CDS 39681020 39681112 39681020 ID=Msa0850480-mRNA-1:cds;Parent=Msa0850480-mRNA-1
chr5_4 CDS 39680870 39680929 39680870 ID=Msa0850480-mRNA-1:cds;Parent=Msa0850480-mRNA-1
chr5_4 CDS 39680650 39680751 39680650 ID=Msa0850480-mRNA-1:cds;Parent=Msa0850480-mRNA-1
chr5_4 CDS 39680318 39680465 39680318 ID=Msa0850480-mRNA-1:cds;Parent=Msa0850480-mRNA-1
chr5_4 CDS 39680126 39680196 39680126 ID=Msa0850480-mRNA-1:cds;Parent=Msa0850480-mRNA-1
chr5_4 CDS 39679891 39679983 39679891 ID=Msa0850480-mRNA-1:cds;Parent=Msa0850480-mRNA-1
chr5_4 CDS 39679734 39679799 39679734 ID=Msa0850480-mRNA-1:cds;Parent=Msa0850480-mRNA-1
chr5_4 three_prime_UTR 39679363 39679733 39679363 ID=Msa0850480-mRNA-1:three_prime_utr;Parent=Msa0850480-mRNA-1
Gene Sequence

>Msa0850480

ATGACTAACCAGAATATGTTGGGAAAGTCACGTGTGATTGTGAATGAGAGGTTAATGGAGTTAGCAATGTCTATTTCCAACTCTAATGTTTTACCAAGAACTTCAGTGTCTGAATTAATGGCTTTGTTTGGTGGGCTTTTAGGCCAGCACAAAAACAATCTCATTAAGCCTTTGGAAGATGATAATGATCACAAAGGAGCAACTAAAGTTAACGCGTGGATCGATTCCATGAGAGCTTCTTCTCCTACTCGAACCAGACACGAATCAGAAAATCGTGACCAAACTCATTGGACTCTTTTCCATCCTTCTGCTTTGAACATGTTCAATCAAATAATGTACAATACAAATGGGAAACAAATTATAGTTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTAGCAGATCCAGATAAAGCCTACATGAGTAAAAAGATGAGAGTGACATTGAAGGACATAGCAAGACATTTTCCCACAGCCATTGTTAGTGGAAGATGCTTAGACAAGCTATTTAGCTTTGTAAGGTTGGCTGAATTATACTATGCTGGAAGCCATGGGATGGATATTAAGGGTCCAACAAATAGGAGAAGCACTAAAAAAGGTAATAATGATGAGGTACTTTTGCAGCCTGCTAGTGAATTCTTGCCCATGATCAATGAGGTTTATAAGATCTTGGTGGAGAAAACGAAGTGTGTTCCAGGGGCTATGGTGGAAAATAACAAATTTTGTTTGTCTGTACATTTTCGCAACGTTGACGAAAAGAGTTGGGCACCATTGGCTGAACAAGTAAGCTTAGTGCTGAATGATTACCCAAAACTAAAGCTAACACAAGGGAGAAAAGTGTTGGAAATTCGACCAACCATTAAATGGGACAAGGGAAGGGCTCTTGAATTTTTGCTAGAGTCACTTGGATTTGCAAATTCTAAGAATGTATTTCCAATCTATATTGGTGACGATCGAACCGATGAAGATGCTTTCAAGGTTTTGCGCAATAGGGGCCAAGGGTGTGGGATTCTTGTATCTAAAATTTCAAAAGAAACTAATGCTTCTTACACTTTGCAAGATCCATCTGAGGTTGGACAATTTTTGCGGCATTTGGTGGATTGGAAAAGAACAAGTTCTCGTTCTCACAAGTTGTAG

Protein sequence

>Msa0850480

MTNQNMLGKSRVIVNERLMELAMSISNSNVLPRTSVSELMALFGGLLGQHKNNLIKPLEDDNDHKGATKVNAWIDSMRASSPTRTRHESENRDQTHWTLFHPSALNMFNQIMYNTNGKQIIVFLDYDGTLSPIVADPDKAYMSKKMRVTLKDIARHFPTAIVSGRCLDKLFSFVRLAELYYAGSHGMDIKGPTNRRSTKKGNNDEVLLQPASEFLPMINEVYKILVEKTKCVPGAMVENNKFCLSVHFRNVDEKSWAPLAEQVSLVLNDYPKLKLTQGRKVLEIRPTIKWDKGRALEFLLESLGFANSKNVFPIYIGDDRTDEDAFKVLRNRGQGCGILVSKISKETNASYTLQDPSEVGQFLRHLVDWKRTSSRSHKL*