AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0826360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0826360 MtrunA17_Chr5g0447941 97.756 312 7 0 1 312 1 312 0.0 629
Msa0826360 MtrunA17_Chr5g0447951 97.436 312 8 0 1 312 1 312 0.0 628
Msa0826360 MtrunA17_Chr5g0447961 97.436 312 8 0 1 312 1 312 0.0 628
Msa0826360 MtrunA17_Chr3g0121001 68.182 308 97 1 6 312 7 314 1.27e-162 455
Msa0826360 MtrunA17_Chr1g0173621 62.951 305 110 3 1 302 1 305 6.63e-138 392
Msa0826360 MtrunA17_Chr6g0479981 50.165 303 144 5 1 300 1 299 1.06e-96 288
Msa0826360 MtrunA17_Chr6g0480011 49.677 310 137 8 1 300 1 301 2.42e-96 287
Msa0826360 MtrunA17_Chr6g0480021 48.366 306 124 7 19 311 16 300 1.17e-92 277
Msa0826360 MtrunA17_Chr8g0368921 42.958 284 159 2 19 300 15 297 9.81e-76 234
Msa0826360 MtrunA17_Chr4g0018921 41.404 285 162 4 18 300 12 293 8.22e-73 227
Msa0826360 MtrunA17_Chr7g0239701 43.015 272 143 3 49 311 47 315 4.05e-71 223
Msa0826360 MtrunA17_Chr8g0368931 42.708 288 154 4 19 302 15 295 7.97e-70 219
Msa0826360 MtrunA17_Chr4g0009531 42.761 297 153 6 19 310 15 299 4.24e-66 209
Msa0826360 MtrunA17_Chr4g0009581 41.639 305 150 6 19 312 16 303 1.40e-63 203
Msa0826360 MtrunA17_Chr4g0036261 58.750 160 65 1 139 297 1 160 2.23e-60 191
Msa0826360 MtrunA17_Chr4g0036051 39.088 307 172 6 15 310 6 308 1.76e-59 192
Msa0826360 MtrunA17_Chr7g0243551 38.321 274 161 5 20 292 23 289 4.85e-58 188
Msa0826360 MtrunA17_Chr4g0036301 52.941 170 70 3 151 311 1 169 2.85e-51 167
Msa0826360 MtrunA17_Chr4g0036321 52.353 170 71 3 151 311 1 169 8.80e-50 163
Msa0826360 MtrunA17_Chr4g0009621 42.922 219 113 2 82 300 1 207 5.88e-44 150
Msa0826360 MtrunA17_Chr6g0479811 46.018 113 56 2 191 300 1 111 3.66e-26 100
Msa0826360 MtrunA17_Chr4g0036291 51.111 90 42 2 20 107 17 106 3.79e-24 94.7
Msa0826360 MtrunA17_Chr4g0036311 44.037 109 56 3 1 107 1 106 1.91e-23 92.8
Msa0826360 MtrunA17_Chr4g0036251 47.222 108 48 3 1 107 1 100 2.46e-23 92.4
Msa0826360 MtrunA17_Chr6g0479791 49.412 85 32 3 237 311 18 101 1.34e-16 74.3
Msa0826360 MtrunA17_Chr3g0095421 25.836 329 160 13 15 285 42 344 1.65e-16 79.3
Msa0826360 MtrunA17_Chr7g0222171 24.739 287 162 9 41 292 43 310 3.55e-11 63.2
Msa0826360 MtrunA17_Chr1g0204651 22.977 309 169 10 24 290 29 310 6.20e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0826360 AT1G59960.1 53.571 308 132 6 1 300 1 305 7.53e-113 330
Msa0826360 AT1G59950.1 55.903 288 117 5 20 300 15 299 7.99e-106 311
Msa0826360 AT2G37770.2 44.406 286 148 4 19 300 15 293 4.43e-78 241
Msa0826360 AT2G37790.1 43.007 286 152 4 19 300 15 293 3.04e-76 236
Msa0826360 AT5G62420.1 43.662 284 154 4 20 300 14 294 2.00e-74 231
Msa0826360 AT5G01670.1 41.901 284 156 6 19 300 23 299 2.48e-72 226
Msa0826360 AT2G37760.4 42.268 291 141 5 19 299 15 288 6.55e-72 224
Msa0826360 AT2G37760.3 42.268 291 141 5 19 299 15 288 6.55e-72 224
Msa0826360 AT2G37760.5 42.708 288 138 5 19 296 15 285 5.89e-71 222
Msa0826360 AT2G37760.2 42.069 290 141 5 19 298 15 287 4.79e-70 220
Msa0826360 AT2G37760.1 42.069 290 141 5 19 298 15 287 4.79e-70 220
Msa0826360 AT3G53880.1 41.696 283 160 3 19 300 15 293 1.89e-69 219
Msa0826360 AT2G21260.1 39.384 292 162 6 15 295 6 293 1.92e-67 213
Msa0826360 AT3G53880.2 41.786 280 152 4 19 294 15 287 4.57e-67 213
Msa0826360 AT5G01670.2 38.264 311 156 7 19 300 23 326 2.00e-66 212
Msa0826360 AT2G21250.1 38.111 307 175 6 15 310 6 308 3.57e-66 210
Msa0826360 AT2G37760.6 41.700 247 123 4 62 298 6 241 1.64e-57 186
Msa0826360 AT2G37760.7 41.700 247 123 4 62 298 6 241 1.64e-57 186
Msa0826360 AT2G37770.1 47.208 197 94 3 19 212 15 204 3.76e-54 178
Msa0826360 AT2G21250.2 42.381 210 110 5 15 217 6 211 2.30e-48 162
Msa0826360 AT2G21260.2 35.909 220 128 6 87 295 8 225 1.79e-41 144
Msa0826360 AT1G06690.1 26.990 289 155 9 35 285 85 355 2.78e-19 87.8
Msa0826360 AT5G53580.1 24.648 284 159 10 44 289 80 346 5.02e-15 75.1
Msa0826360 AT1G60680.1 27.215 316 163 16 15 285 14 307 2.17e-13 70.5
Msa0826360 AT1G60750.1 25.177 282 161 11 44 300 50 306 8.25e-11 62.4

Find 72 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCAAAGATACGCAAATTT+TGG 0.172677 5_3:+66709386 None:intergenic
TGCTTGCACCTTTCCTCAAC+GGG 0.292412 5_3:+66709554 None:intergenic
TGGACTTGTACTTGATTCAT+TGG 0.300645 5_3:-66709951 Msa0826360:CDS
ATAACTTGGAGAAAATAAAA+TGG 0.308072 5_3:+66709139 None:intergenic
ATTGGAAATGTAAACTTTCC+AGG 0.315067 5_3:+66709913 None:intergenic
GTGTCTATAACCTTGTTTGA+TGG 0.333209 5_3:+66710395 None:intergenic
CATTTGATGTGAAGGGTGTT+TGG 0.341777 5_3:-66709870 Msa0826360:CDS
TCATTCTCCATAACTTCATT+TGG 0.362803 5_3:+66709526 None:intergenic
TCTTTCTTACATGTGAAGTC+AGG 0.371382 5_3:+66710441 None:intergenic
CTTGGACTCACTAAAGCTAT+TGG 0.375778 5_3:-66709823 Msa0826360:CDS
AAAATTTGCGTATCTTTGAT+TGG 0.382837 5_3:-66709384 Msa0826360:CDS
AGTCCGGGCTTGGTTGGTCC+AGG 0.391423 5_3:+66709304 None:intergenic
TTTGATACTGCTGCTGCATA+TGG 0.396016 5_3:-66710372 Msa0826360:CDS
AACACTACCCATGTTGTTGT+TGG 0.397673 5_3:+66710536 None:intergenic
TTGCACAAATTTCTCTAAGA+TGG 0.398611 5_3:-66709465 Msa0826360:CDS
ATTTGATGTGAAGGGTGTTT+GGG 0.409991 5_3:-66709869 Msa0826360:CDS
ATCATAGAGGTCATTGAGTC+CGG 0.411816 5_3:+66709288 None:intergenic
TCTTTCCTTATCATAGCTCT+TGG 0.419142 5_3:+66709414 None:intergenic
AAGAGATCTGCCACATCAAT+TGG 0.421446 5_3:+66709895 None:intergenic
TTGAAAGAGGCAATTGAACT+TGG 0.422526 5_3:-66710324 Msa0826360:CDS
TGTTCCCAAGAGCTATGATA+AGG 0.425757 5_3:-66709419 Msa0826360:CDS
CAAACACCCTTCACATCAAA+TGG 0.432538 5_3:+66709871 None:intergenic
CTTTCCTTATCATAGCTCTT+GGG 0.433848 5_3:+66709415 None:intergenic
GAGGTCATTGAGTCCGGGCT+TGG 0.446240 5_3:+66709294 None:intergenic
CAGGGGACCAAATGAAGTTA+TGG 0.449659 5_3:-66709533 Msa0826360:CDS
AAGCAAAATCGTTTGATCCC+TGG 0.455139 5_3:-66709322 Msa0826360:CDS
CGTTGAGGAAAGGTGCAAGC+AGG 0.464952 5_3:-66709552 Msa0826360:CDS
AAAGTTTAGAAGTAACAAAA+AGG 0.467615 5_3:+66710283 None:intergenic
GACTCTTCAACTAGACTACT+TGG 0.469433 5_3:-66709971 Msa0826360:CDS
CTGCTTGCACCTTTCCTCAA+CGG 0.474588 5_3:+66709553 None:intergenic
ATCCCTGGACCAACCAAGCC+CGG 0.482612 5_3:-66709307 Msa0826360:CDS
AAGTTTCAAGCTTTCCTCCA+TGG 0.483539 5_3:+66709843 None:intergenic
TATGGCTCAGAACAAGCTCT+TGG 0.491850 5_3:-66710354 Msa0826360:CDS
ATGGAGGAAAGCTTGAAACT+TGG 0.498400 5_3:-66709841 Msa0826360:CDS
TCTTGGAGAGGCTTTGAAAG+AGG 0.506147 5_3:-66710337 Msa0826360:CDS
TGACTTACTTGATTGACTGC+TGG 0.506233 5_3:+66709742 None:intergenic
CTTTCTTACATGTGAAGTCA+GGG 0.506502 5_3:+66710442 None:intergenic
CAATTGAAGATGCCTGTAGT+TGG 0.517264 5_3:-66710477 Msa0826360:CDS
GTGTTTGTAAGAACCTTTGT+TGG 0.534052 5_3:+66710507 None:intergenic
GCTGATCCCATTCCAACTAC+AGG 0.540084 5_3:+66710465 None:intergenic
AAAGAGATTGCAGATGCTCA+TGG 0.540234 5_3:-66709496 Msa0826360:CDS
GTCCGGGCTTGGTTGGTCCA+GGG 0.541777 5_3:+66709305 None:intergenic
AATACTACTATGAAATAACT+TGG 0.542284 5_3:+66709125 None:intergenic
GAAGATGCCTGTAGTTGGAA+TGG 0.546457 5_3:-66710472 Msa0826360:CDS
TCATTGAGTCCGGGCTTGGT+TGG 0.547327 5_3:+66709298 None:intergenic
GTTGAGGAAAGGTGCAAGCA+GGG 0.550606 5_3:-66709551 Msa0826360:CDS
TCTATATTTAGTCATCATAG+AGG 0.553846 5_3:+66709275 None:intergenic
TGGCCACTTAGTTCTCAGCC+TGG 0.559322 5_3:-66709931 Msa0826360:CDS
AAGATGCCTGTAGTTGGAAT+GGG 0.562876 5_3:-66710471 Msa0826360:CDS
GAAGGGTGTTTGGGAATCCA+TGG 0.563941 5_3:-66709860 Msa0826360:CDS
TCTCTTGCCATTTGATGTGA+AGG 0.569789 5_3:-66709878 Msa0826360:CDS
TCATAGAGGTCATTGAGTCC+GGG 0.574712 5_3:+66709289 None:intergenic
AGGTGGAGATGAACCTTGCA+TGG 0.584406 5_3:-66709636 Msa0826360:CDS
ATCATTGAAGCCATCAAACA+AGG 0.587661 5_3:-66710405 Msa0826360:CDS
CTAAGATGGCTATATGAACA+AGG 0.588672 5_3:-66709451 Msa0826360:CDS
TAGTGTTGAAATTCCAACAA+AGG 0.595790 5_3:-66710520 Msa0826360:CDS
TTCTCAATCCAACAACAACA+TGG 0.599916 5_3:-66710544 Msa0826360:exon
AAATTGATTATTTAAAACAA+CGG 0.602105 5_3:+66709163 None:intergenic
GTTTACATTTCCAATTGATG+TGG 0.608506 5_3:-66709905 Msa0826360:CDS
TTTCTTACATGTGAAGTCAG+GGG 0.620409 5_3:+66710443 None:intergenic
ATGTTGTTGTTGGATTGAGA+AGG 0.624157 5_3:+66710546 None:intergenic
AGAGCAGGAATAACAAGATG+AGG 0.624425 5_3:+66710243 None:intergenic
TTGAGGAAAGGTGCAAGCAG+GGG 0.624444 5_3:-66709550 Msa0826360:CDS
CAGGAATAACAAGATGAGGA+TGG 0.629084 5_3:+66710247 None:intergenic
CTCTTGCCATTTGATGTGAA+GGG 0.629600 5_3:-66709877 Msa0826360:CDS
TTTCCTCAACGGGGAAAATG+CGG 0.632608 5_3:+66709564 None:intergenic
CTCAGAACAAGCTCTTGGAG+AGG 0.635937 5_3:-66710349 Msa0826360:CDS
TTTCCAGGCTGAGAACTAAG+TGG 0.647166 5_3:+66709928 None:intergenic
TCTCAATCCAACAACAACAT+GGG 0.679881 5_3:-66710543 Msa0826360:exon
GGGTGTTTGGGAATCCATGG+AGG 0.706988 5_3:-66709857 Msa0826360:CDS
ATTGACTGCTGGAAGAACAG+TGG 0.720759 5_3:+66709753 None:intergenic
GCTTGCACCTTTCCTCAACG+GGG 0.723595 5_3:+66709555 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTGATTATTTAAAACAA+CGG + chr5_3:66710540-66710559 None:intergenic 10.0%
!!! AAATTGATTATTTAAAACAA+CGG + chr5_3:66710540-66710559 None:intergenic 10.0%
!! AAAGTTTAGAAGTAACAAAA+AGG + chr5_3:66709420-66709439 None:intergenic 20.0%
!!! TTTTTGTTACTTCTAAACTT+TGG - chr5_3:66709419-66709438 Msa0826360:CDS 20.0%
!!! TTTTGTTACTTCTAAACTTT+GGG - chr5_3:66709420-66709439 Msa0826360:CDS 20.0%
!! CAATGAACTCATATATTTAT+AGG - chr5_3:66710044-66710063 Msa0826360:intron 20.0%
!!! TAATTTTGAAGCAAACTTAA+AGG + chr5_3:66710468-66710487 None:intergenic 20.0%
!! ATAACTTGGAGAAAATAAAA+TGG + chr5_3:66710564-66710583 None:intergenic 20.0%
!! AATACTACTATGAAATAACT+TGG + chr5_3:66710578-66710597 None:intergenic 20.0%
!! AAAGTTTAGAAGTAACAAAA+AGG + chr5_3:66709420-66709439 None:intergenic 20.0%
!!! TTTTTGTTACTTCTAAACTT+TGG - chr5_3:66709419-66709438 Msa0826360:CDS 20.0%
!!! TTTTGTTACTTCTAAACTTT+GGG - chr5_3:66709420-66709439 Msa0826360:CDS 20.0%
!! CAATGAACTCATATATTTAT+AGG - chr5_3:66710044-66710063 Msa0826360:intron 20.0%
!!! TAATTTTGAAGCAAACTTAA+AGG + chr5_3:66710468-66710487 None:intergenic 20.0%
!! ATAACTTGGAGAAAATAAAA+TGG + chr5_3:66710564-66710583 None:intergenic 20.0%
!! AATACTACTATGAAATAACT+TGG + chr5_3:66710578-66710597 None:intergenic 20.0%
! CAAGAAGTTAATCAAAACTT+AGG + chr5_3:66709993-66710012 None:intergenic 25.0%
! TGAACTCATATATTTATAGG+TGG - chr5_3:66710047-66710066 Msa0826360:intron 25.0%
!! AATCAAAGATACGCAAATTT+TGG + chr5_3:66710317-66710336 None:intergenic 25.0%
! AAAATTTGCGTATCTTTGAT+TGG - chr5_3:66710316-66710335 Msa0826360:CDS 25.0%
! TCTATATTTAGTCATCATAG+AGG + chr5_3:66710428-66710447 None:intergenic 25.0%
! CAAGAAGTTAATCAAAACTT+AGG + chr5_3:66709993-66710012 None:intergenic 25.0%
! TGAACTCATATATTTATAGG+TGG - chr5_3:66710047-66710066 Msa0826360:intron 25.0%
!! AATCAAAGATACGCAAATTT+TGG + chr5_3:66710317-66710336 None:intergenic 25.0%
! AAAATTTGCGTATCTTTGAT+TGG - chr5_3:66710316-66710335 Msa0826360:CDS 25.0%
! TCTATATTTAGTCATCATAG+AGG + chr5_3:66710428-66710447 None:intergenic 25.0%
! TAGTGTTGAAATTCCAACAA+AGG - chr5_3:66709180-66709199 Msa0826360:three_prime_UTR 30.0%
ATTGGAAATGTAAACTTTCC+AGG + chr5_3:66709790-66709809 None:intergenic 30.0%
GTTTACATTTCCAATTGATG+TGG - chr5_3:66709795-66709814 Msa0826360:CDS 30.0%
TCATTCTCCATAACTTCATT+TGG + chr5_3:66710177-66710196 None:intergenic 30.0%
! TTGCACAAATTTCTCTAAGA+TGG - chr5_3:66710235-66710254 Msa0826360:CDS 30.0%
! TAGTGTTGAAATTCCAACAA+AGG - chr5_3:66709180-66709199 Msa0826360:three_prime_UTR 30.0%
ATTGGAAATGTAAACTTTCC+AGG + chr5_3:66709790-66709809 None:intergenic 30.0%
GTTTACATTTCCAATTGATG+TGG - chr5_3:66709795-66709814 Msa0826360:CDS 30.0%
TCATTCTCCATAACTTCATT+TGG + chr5_3:66710177-66710196 None:intergenic 30.0%
! TTGCACAAATTTCTCTAAGA+TGG - chr5_3:66710235-66710254 Msa0826360:CDS 30.0%
! ATGTTGTTGTTGGATTGAGA+AGG + chr5_3:66709157-66709176 None:intergenic 35.0%
TTCTCAATCCAACAACAACA+TGG - chr5_3:66709156-66709175 Msa0826360:three_prime_UTR 35.0%
TCTCAATCCAACAACAACAT+GGG - chr5_3:66709157-66709176 Msa0826360:three_prime_UTR 35.0%
GTGTTTGTAAGAACCTTTGT+TGG + chr5_3:66709196-66709215 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG + chr5_3:66709260-66709279 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG + chr5_3:66709261-66709280 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG + chr5_3:66709262-66709281 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG - chr5_3:66709295-66709314 Msa0826360:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG + chr5_3:66709308-66709327 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG - chr5_3:66709376-66709395 Msa0826360:CDS 35.0%
!! TTGAGAGATTTTTGAAGAGC+AGG + chr5_3:66709475-66709494 None:intergenic 35.0%
!! ATGATTTGTTGATTTCGTGC+AGG - chr5_3:66709707-66709726 Msa0826360:intron 35.0%
TGGACTTGTACTTGATTCAT+TGG - chr5_3:66709749-66709768 Msa0826360:intron 35.0%
!! ATTTGATGTGAAGGGTGTTT+GGG - chr5_3:66709831-66709850 Msa0826360:CDS 35.0%
CTAAGATGGCTATATGAACA+AGG - chr5_3:66710249-66710268 Msa0826360:CDS 35.0%
CTTTCCTTATCATAGCTCTT+GGG + chr5_3:66710288-66710307 None:intergenic 35.0%
TCTTTCCTTATCATAGCTCT+TGG + chr5_3:66710289-66710308 None:intergenic 35.0%
!!! ATACTTGTTGCTTTTGAGCT+TGG - chr5_3:66710509-66710528 Msa0826360:CDS 35.0%
! ATGTTGTTGTTGGATTGAGA+AGG + chr5_3:66709157-66709176 None:intergenic 35.0%
TTCTCAATCCAACAACAACA+TGG - chr5_3:66709156-66709175 Msa0826360:three_prime_UTR 35.0%
TCTCAATCCAACAACAACAT+GGG - chr5_3:66709157-66709176 Msa0826360:three_prime_UTR 35.0%
GTGTTTGTAAGAACCTTTGT+TGG + chr5_3:66709196-66709215 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG + chr5_3:66709260-66709279 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG + chr5_3:66709261-66709280 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG + chr5_3:66709262-66709281 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG - chr5_3:66709295-66709314 Msa0826360:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG + chr5_3:66709308-66709327 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG - chr5_3:66709376-66709395 Msa0826360:CDS 35.0%
!! TTGAGAGATTTTTGAAGAGC+AGG + chr5_3:66709475-66709494 None:intergenic 35.0%
!! ATGATTTGTTGATTTCGTGC+AGG - chr5_3:66709707-66709726 Msa0826360:intron 35.0%
TGGACTTGTACTTGATTCAT+TGG - chr5_3:66709749-66709768 Msa0826360:intron 35.0%
!! ATTTGATGTGAAGGGTGTTT+GGG - chr5_3:66709831-66709850 Msa0826360:CDS 35.0%
CTAAGATGGCTATATGAACA+AGG - chr5_3:66710249-66710268 Msa0826360:CDS 35.0%
CTTTCCTTATCATAGCTCTT+GGG + chr5_3:66710288-66710307 None:intergenic 35.0%
TCTTTCCTTATCATAGCTCT+TGG + chr5_3:66710289-66710308 None:intergenic 35.0%
!!! ATACTTGTTGCTTTTGAGCT+TGG - chr5_3:66710509-66710528 Msa0826360:CDS 35.0%
AACACTACCCATGTTGTTGT+TGG + chr5_3:66709167-66709186 None:intergenic 40.0%
CAATTGAAGATGCCTGTAGT+TGG - chr5_3:66709223-66709242 Msa0826360:three_prime_UTR 40.0%
AAGATGCCTGTAGTTGGAAT+GGG - chr5_3:66709229-66709248 Msa0826360:three_prime_UTR 40.0%
TTTGATACTGCTGCTGCATA+TGG - chr5_3:66709328-66709347 Msa0826360:CDS 40.0%
CAGGAATAACAAGATGAGGA+TGG + chr5_3:66709456-66709475 None:intergenic 40.0%
AGAGCAGGAATAACAAGATG+AGG + chr5_3:66709460-66709479 None:intergenic 40.0%
GACTCTTCAACTAGACTACT+TGG - chr5_3:66709729-66709748 Msa0826360:intron 40.0%
AAGAGATCTGCCACATCAAT+TGG + chr5_3:66709808-66709827 None:intergenic 40.0%
! TCTCTTGCCATTTGATGTGA+AGG - chr5_3:66709822-66709841 Msa0826360:CDS 40.0%
! CTCTTGCCATTTGATGTGAA+GGG - chr5_3:66709823-66709842 Msa0826360:CDS 40.0%
CAAACACCCTTCACATCAAA+TGG + chr5_3:66709832-66709851 None:intergenic 40.0%
!! CATTTGATGTGAAGGGTGTT+TGG - chr5_3:66709830-66709849 Msa0826360:CDS 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG + chr5_3:66709860-66709879 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG - chr5_3:66709859-66709878 Msa0826360:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG - chr5_3:66709877-66709896 Msa0826360:CDS 40.0%
TGACTTACTTGATTGACTGC+TGG + chr5_3:66709961-66709980 None:intergenic 40.0%
AAAGAGATTGCAGATGCTCA+TGG - chr5_3:66710204-66710223 Msa0826360:intron 40.0%
TGTTCCCAAGAGCTATGATA+AGG - chr5_3:66710281-66710300 Msa0826360:CDS 40.0%
AAGCAAAATCGTTTGATCCC+TGG - chr5_3:66710378-66710397 Msa0826360:CDS 40.0%
ATCATAGAGGTCATTGAGTC+CGG + chr5_3:66710415-66710434 None:intergenic 40.0%
AACACTACCCATGTTGTTGT+TGG + chr5_3:66709167-66709186 None:intergenic 40.0%
CAATTGAAGATGCCTGTAGT+TGG - chr5_3:66709223-66709242 Msa0826360:three_prime_UTR 40.0%
AAGATGCCTGTAGTTGGAAT+GGG - chr5_3:66709229-66709248 Msa0826360:three_prime_UTR 40.0%
TTTGATACTGCTGCTGCATA+TGG - chr5_3:66709328-66709347 Msa0826360:CDS 40.0%
CAGGAATAACAAGATGAGGA+TGG + chr5_3:66709456-66709475 None:intergenic 40.0%
AGAGCAGGAATAACAAGATG+AGG + chr5_3:66709460-66709479 None:intergenic 40.0%
GACTCTTCAACTAGACTACT+TGG - chr5_3:66709729-66709748 Msa0826360:intron 40.0%
AAGAGATCTGCCACATCAAT+TGG + chr5_3:66709808-66709827 None:intergenic 40.0%
! TCTCTTGCCATTTGATGTGA+AGG - chr5_3:66709822-66709841 Msa0826360:CDS 40.0%
! CTCTTGCCATTTGATGTGAA+GGG - chr5_3:66709823-66709842 Msa0826360:CDS 40.0%
CAAACACCCTTCACATCAAA+TGG + chr5_3:66709832-66709851 None:intergenic 40.0%
!! CATTTGATGTGAAGGGTGTT+TGG - chr5_3:66709830-66709849 Msa0826360:CDS 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG + chr5_3:66709860-66709879 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG - chr5_3:66709859-66709878 Msa0826360:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG - chr5_3:66709877-66709896 Msa0826360:CDS 40.0%
TGACTTACTTGATTGACTGC+TGG + chr5_3:66709961-66709980 None:intergenic 40.0%
AAAGAGATTGCAGATGCTCA+TGG - chr5_3:66710204-66710223 Msa0826360:intron 40.0%
TGTTCCCAAGAGCTATGATA+AGG - chr5_3:66710281-66710300 Msa0826360:CDS 40.0%
AAGCAAAATCGTTTGATCCC+TGG - chr5_3:66710378-66710397 Msa0826360:CDS 40.0%
ATCATAGAGGTCATTGAGTC+CGG + chr5_3:66710415-66710434 None:intergenic 40.0%
GAAGATGCCTGTAGTTGGAA+TGG - chr5_3:66709228-66709247 Msa0826360:three_prime_UTR 45.0%
TATGGCTCAGAACAAGCTCT+TGG - chr5_3:66709346-66709365 Msa0826360:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG - chr5_3:66709363-66709382 Msa0826360:CDS 45.0%
TTTCCAGGCTGAGAACTAAG+TGG + chr5_3:66709775-66709794 None:intergenic 45.0%
ATTGACTGCTGGAAGAACAG+TGG + chr5_3:66709950-66709969 None:intergenic 45.0%
! GCTTCTTTTGTTGCCATGCA+AGG + chr5_3:66710080-66710099 None:intergenic 45.0%
! AGAGAGTTTTGCAACGCACA+CGG - chr5_3:66710102-66710121 Msa0826360:intron 45.0%
TTTCCTCAACGGGGAAAATG+CGG + chr5_3:66710139-66710158 None:intergenic 45.0%
CAGGGGACCAAATGAAGTTA+TGG - chr5_3:66710167-66710186 Msa0826360:intron 45.0%
TCATAGAGGTCATTGAGTCC+GGG + chr5_3:66710414-66710433 None:intergenic 45.0%
GAAGATGCCTGTAGTTGGAA+TGG - chr5_3:66709228-66709247 Msa0826360:three_prime_UTR 45.0%
TATGGCTCAGAACAAGCTCT+TGG - chr5_3:66709346-66709365 Msa0826360:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG - chr5_3:66709363-66709382 Msa0826360:CDS 45.0%
TTTCCAGGCTGAGAACTAAG+TGG + chr5_3:66709775-66709794 None:intergenic 45.0%
ATTGACTGCTGGAAGAACAG+TGG + chr5_3:66709950-66709969 None:intergenic 45.0%
! GCTTCTTTTGTTGCCATGCA+AGG + chr5_3:66710080-66710099 None:intergenic 45.0%
! AGAGAGTTTTGCAACGCACA+CGG - chr5_3:66710102-66710121 Msa0826360:intron 45.0%
TTTCCTCAACGGGGAAAATG+CGG + chr5_3:66710139-66710158 None:intergenic 45.0%
CAGGGGACCAAATGAAGTTA+TGG - chr5_3:66710167-66710186 Msa0826360:intron 45.0%
TCATAGAGGTCATTGAGTCC+GGG + chr5_3:66710414-66710433 None:intergenic 45.0%
GCTGATCCCATTCCAACTAC+AGG + chr5_3:66709238-66709257 None:intergenic 50.0%
CTCAGAACAAGCTCTTGGAG+AGG - chr5_3:66709351-66709370 Msa0826360:CDS 50.0%
!! GAAGGGTGTTTGGGAATCCA+TGG - chr5_3:66709840-66709859 Msa0826360:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG - chr5_3:66710064-66710083 Msa0826360:intron 50.0%
! TAACCGCATTTTCCCCGTTG+AGG - chr5_3:66710133-66710152 Msa0826360:intron 50.0%
! GCATTTTCCCCGTTGAGGAA+AGG - chr5_3:66710138-66710157 Msa0826360:intron 50.0%
TGCTTGCACCTTTCCTCAAC+GGG + chr5_3:66710149-66710168 None:intergenic 50.0%
CTGCTTGCACCTTTCCTCAA+CGG + chr5_3:66710150-66710169 None:intergenic 50.0%
! GTTGAGGAAAGGTGCAAGCA+GGG - chr5_3:66710149-66710168 Msa0826360:intron 50.0%
! TTGAGGAAAGGTGCAAGCAG+GGG - chr5_3:66710150-66710169 Msa0826360:intron 50.0%
GCTGATCCCATTCCAACTAC+AGG + chr5_3:66709238-66709257 None:intergenic 50.0%
CTCAGAACAAGCTCTTGGAG+AGG - chr5_3:66709351-66709370 Msa0826360:CDS 50.0%
!! GAAGGGTGTTTGGGAATCCA+TGG - chr5_3:66709840-66709859 Msa0826360:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG - chr5_3:66710064-66710083 Msa0826360:intron 50.0%
! TAACCGCATTTTCCCCGTTG+AGG - chr5_3:66710133-66710152 Msa0826360:intron 50.0%
! GCATTTTCCCCGTTGAGGAA+AGG - chr5_3:66710138-66710157 Msa0826360:intron 50.0%
TGCTTGCACCTTTCCTCAAC+GGG + chr5_3:66710149-66710168 None:intergenic 50.0%
CTGCTTGCACCTTTCCTCAA+CGG + chr5_3:66710150-66710169 None:intergenic 50.0%
! GTTGAGGAAAGGTGCAAGCA+GGG - chr5_3:66710149-66710168 Msa0826360:intron 50.0%
! TTGAGGAAAGGTGCAAGCAG+GGG - chr5_3:66710150-66710169 Msa0826360:intron 50.0%
! TGGCCACTTAGTTCTCAGCC+TGG - chr5_3:66709769-66709788 Msa0826360:CDS 55.0%
GGGTGTTTGGGAATCCATGG+AGG - chr5_3:66709843-66709862 Msa0826360:CDS 55.0%
GCTTGCACCTTTCCTCAACG+GGG + chr5_3:66710148-66710167 None:intergenic 55.0%
! CGTTGAGGAAAGGTGCAAGC+AGG - chr5_3:66710148-66710167 Msa0826360:intron 55.0%
! TCATTGAGTCCGGGCTTGGT+TGG + chr5_3:66710405-66710424 None:intergenic 55.0%
! TGGCCACTTAGTTCTCAGCC+TGG - chr5_3:66709769-66709788 Msa0826360:CDS 55.0%
GGGTGTTTGGGAATCCATGG+AGG - chr5_3:66709843-66709862 Msa0826360:CDS 55.0%
GCTTGCACCTTTCCTCAACG+GGG + chr5_3:66710148-66710167 None:intergenic 55.0%
! CGTTGAGGAAAGGTGCAAGC+AGG - chr5_3:66710148-66710167 Msa0826360:intron 55.0%
! TCATTGAGTCCGGGCTTGGT+TGG + chr5_3:66710405-66710424 None:intergenic 55.0%
ATCCCTGGACCAACCAAGCC+CGG - chr5_3:66710393-66710412 Msa0826360:CDS 60.0%
GAGGTCATTGAGTCCGGGCT+TGG + chr5_3:66710409-66710428 None:intergenic 60.0%
ATCCCTGGACCAACCAAGCC+CGG - chr5_3:66710393-66710412 Msa0826360:CDS 60.0%
GAGGTCATTGAGTCCGGGCT+TGG + chr5_3:66710409-66710428 None:intergenic 60.0%
! GTCCGGGCTTGGTTGGTCCA+GGG + chr5_3:66710398-66710417 None:intergenic 65.0%
! AGTCCGGGCTTGGTTGGTCC+AGG + chr5_3:66710399-66710418 None:intergenic 65.0%
! GTCCGGGCTTGGTTGGTCCA+GGG + chr5_3:66710398-66710417 None:intergenic 65.0%
! AGTCCGGGCTTGGTTGGTCC+AGG + chr5_3:66710399-66710418 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 66709118 66710604 66709118 ID=Msa0826360;Name=Msa0826360
chr5_3 mRNA 66709118 66710604 66709118 ID=Msa0826360-mRNA-1;Parent=Msa0826360;Name=Msa0826360-mRNA-1;_AED=0.04;_eAED=0.04;_QI=57|1|1|1|1|1|3|164|312
chr5_3 exon 66709118 66709656 66709118 ID=Msa0826360-mRNA-1:exon:20981;Parent=Msa0826360-mRNA-1
chr5_3 exon 66709750 66709993 66709750 ID=Msa0826360-mRNA-1:exon:20980;Parent=Msa0826360-mRNA-1
chr5_3 exon 66710228 66710604 66710228 ID=Msa0826360-mRNA-1:exon:20979;Parent=Msa0826360-mRNA-1
chr5_3 five_prime_UTR 66710548 66710604 66710548 ID=Msa0826360-mRNA-1:five_prime_utr;Parent=Msa0826360-mRNA-1
chr5_3 CDS 66710228 66710547 66710228 ID=Msa0826360-mRNA-1:cds;Parent=Msa0826360-mRNA-1
chr5_3 CDS 66709750 66709993 66709750 ID=Msa0826360-mRNA-1:cds;Parent=Msa0826360-mRNA-1
chr5_3 CDS 66709282 66709656 66709282 ID=Msa0826360-mRNA-1:cds;Parent=Msa0826360-mRNA-1
chr5_3 three_prime_UTR 66709118 66709281 66709118 ID=Msa0826360-mRNA-1:three_prime_utr;Parent=Msa0826360-mRNA-1
Gene Sequence

>Msa0826360

ATGGGTAGTGTTGAAATTCCAACAAAGGTTCTTACAAACACATCTAGTCAATTGAAGATGCCTGTAGTTGGAATGGGATCAGCCCCTGACTTCACATGTAAGAAAGACACAAAAGATGCAATCATTGAAGCCATCAAACAAGGTTATAGACACTTTGATACTGCTGCTGCATATGGCTCAGAACAAGCTCTTGGAGAGGCTTTGAAAGAGGCAATTGAACTTGGTCTTGTCACTAGAGATGACCTTTTTGTTACTTCTAAACTTTGGGTTACTGAAAACCATCCTCATCTTGTTATTCCTGCTCTTCAAAAATCTCTCAAGACTCTTCAACTAGACTACTTGGACTTGTACTTGATTCATTGGCCACTTAGTTCTCAGCCTGGAAAGTTTACATTTCCAATTGATGTGGCAGATCTCTTGCCATTTGATGTGAAGGGTGTTTGGGAATCCATGGAGGAAAGCTTGAAACTTGGACTCACTAAAGCTATTGGAGTTAGTAACTTCTCTGTCAAGAAACTTGAAAATCTTCTCTCTGTTGCCACTGTTCTTCCAGCAGTCAATCAAGTGGAGATGAACCTTGCATGGCAACAAAAGAAGCTTAGAGAGTTTTGCAACGCACACGGAATAGTGTTAACCGCATTTTCCCCGTTGAGGAAAGGTGCAAGCAGGGGACCAAATGAAGTTATGGAGAATGATATGCTTAAAGAGATTGCAGATGCTCATGGAAAGTCTGTTGCACAAATTTCTCTAAGATGGCTATATGAACAAGGAGTTACTTTTGTTCCCAAGAGCTATGATAAGGAAAGAATGAGCCAAAATTTGCGTATCTTTGATTGGTCATTAACAAAAGAAGATCATGAGAAAATTGCTCAAATTAAGCAAAATCGTTTGATCCCTGGACCAACCAAGCCCGGACTCAATGACCTCTATGATGACTAA

Protein sequence

>Msa0826360

MGSVEIPTKVLTNTSSQLKMPVVGMGSAPDFTCKKDTKDAIIEAIKQGYRHFDTAAAYGSEQALGEALKEAIELGLVTRDDLFVTSKLWVTENHPHLVIPALQKSLKTLQLDYLDLYLIHWPLSSQPGKFTFPIDVADLLPFDVKGVWESMEESLKLGLTKAIGVSNFSVKKLENLLSVATVLPAVNQVEMNLAWQQKKLREFCNAHGIVLTAFSPLRKGASRGPNEVMENDMLKEIADAHGKSVAQISLRWLYEQGVTFVPKSYDKERMSQNLRIFDWSLTKEDHEKIAQIKQNRLIPGPTKPGLNDLYDD*