Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525530 | AES72264.1 | 89.399 | 283 | 30 | 0 | 1 | 283 | 16 | 298 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525530 | sp|G4N286|RED1_MAGO7 | 32.222 | 270 | 176 | 5 | 17 | 283 | 10 | 275 | 1.36e-40 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525530 | G7J4E1 | 89.399 | 283 | 30 | 0 | 1 | 283 | 16 | 298 | 0.0 | 530 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024330 | Msa0525530 | 0.812723 | 3.673629e-51 | -8.615850e-47 |
| Msa0065190 | Msa0525530 | 0.817201 | 3.728872e-52 | -8.615850e-47 |
| Msa0163410 | Msa0525530 | 0.802785 | 4.756778e-49 | -8.615850e-47 |
| Msa0379090 | Msa0525530 | 0.802883 | 4.542157e-49 | -8.615850e-47 |
| Msa0525530 | Msa0565930 | 0.813479 | 2.507145e-51 | -8.615850e-47 |
| Msa0525530 | Msa0598680 | 0.817505 | 3.184451e-52 | -8.615850e-47 |
| Msa0525530 | Msa0760730 | 0.807082 | 6.012725e-50 | -8.615850e-47 |
| Msa0525530 | Msa0851870 | 0.804839 | 1.781434e-49 | -8.615850e-47 |
| Msa0525530 | Msa1029010 | 0.803060 | 4.173891e-49 | -8.615850e-47 |
| Msa0525530 | Msa1182950 | 0.814324 | 1.632330e-51 | -8.615850e-47 |
| Msa0525530 | Msa1292700 | 0.809225 | 2.102534e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525530 | MtrunA17_Chr3g0124471 | 89.399 | 283 | 30 | 0 | 1 | 283 | 16 | 298 | 0.0 | 530 |
| Msa0525530 | MtrunA17_Chr3g0124481 | 91.901 | 284 | 23 | 0 | 1 | 284 | 1 | 284 | 0.0 | 522 |
| Msa0525530 | MtrunA17_Chr4g0054341 | 47.015 | 268 | 139 | 2 | 13 | 278 | 4 | 270 | 1.16e-85 | 257 |
| Msa0525530 | MtrunA17_Chr3g0122901 | 33.505 | 194 | 122 | 3 | 8 | 195 | 72 | 264 | 1.75e-23 | 97.8 |
| Msa0525530 | MtrunA17_Chr4g0028921 | 36.041 | 197 | 111 | 7 | 15 | 198 | 15 | 209 | 6.11e-23 | 95.1 |
| Msa0525530 | MtrunA17_Chr4g0028911 | 35.025 | 197 | 113 | 7 | 15 | 198 | 15 | 209 | 1.47e-21 | 91.7 |
| Msa0525530 | MtrunA17_Chr1g0171831 | 32.195 | 205 | 119 | 7 | 9 | 195 | 12 | 214 | 2.95e-19 | 85.1 |
| Msa0525530 | MtrunA17_Chr8g0386201 | 29.502 | 261 | 161 | 10 | 15 | 263 | 49 | 298 | 2.53e-18 | 83.6 |
| Msa0525530 | MtrunA17_Chr7g0249571 | 28.881 | 277 | 154 | 11 | 2 | 267 | 31 | 275 | 4.87e-17 | 79.7 |
| Msa0525530 | MtrunA17_Chr4g0026001 | 32.086 | 187 | 105 | 5 | 15 | 188 | 18 | 195 | 1.06e-16 | 78.2 |
| Msa0525530 | MtrunA17_Chr4g0025971 | 31.667 | 180 | 115 | 4 | 15 | 188 | 18 | 195 | 1.50e-16 | 77.8 |
| Msa0525530 | MtrunA17_Chr4g0025981 | 29.444 | 180 | 119 | 4 | 15 | 188 | 45 | 222 | 8.45e-16 | 76.3 |
| Msa0525530 | MtrunA17_Chr3g0123251 | 30.808 | 198 | 113 | 7 | 17 | 197 | 57 | 247 | 9.68e-16 | 75.9 |
| Msa0525530 | MtrunA17_Chr7g0267011 | 30.769 | 182 | 120 | 4 | 15 | 191 | 12 | 192 | 1.52e-15 | 73.6 |
| Msa0525530 | MtrunA17_Chr7g0272961 | 30.198 | 202 | 116 | 7 | 11 | 191 | 33 | 230 | 5.52e-14 | 70.9 |
| Msa0525530 | MtrunA17_Chr7g0270451 | 30.151 | 199 | 130 | 6 | 15 | 208 | 10 | 204 | 8.17e-14 | 69.7 |
| Msa0525530 | MtrunA17_Chr4g0076931 | 32.275 | 189 | 117 | 6 | 16 | 195 | 11 | 197 | 9.39e-14 | 69.3 |
| Msa0525530 | MtrunA17_Chr2g0287951 | 32.967 | 182 | 108 | 4 | 16 | 188 | 38 | 214 | 1.43e-13 | 69.7 |
| Msa0525530 | MtrunA17_Chr4g0044131 | 29.032 | 186 | 126 | 3 | 15 | 195 | 12 | 196 | 4.89e-13 | 67.8 |
| Msa0525530 | MtrunA17_Chr4g0033091 | 29.798 | 198 | 126 | 6 | 9 | 195 | 22 | 217 | 6.51e-13 | 67.0 |
| Msa0525530 | MtrunA17_Chr7g0244061 | 29.947 | 187 | 124 | 3 | 15 | 195 | 33 | 218 | 2.84e-12 | 65.9 |
| Msa0525530 | MtrunA17_Chr7g0268591 | 27.184 | 206 | 140 | 5 | 15 | 213 | 37 | 239 | 3.27e-12 | 65.5 |
| Msa0525530 | MtrunA17_Chr6g0459261 | 27.604 | 192 | 125 | 6 | 12 | 193 | 26 | 213 | 2.19e-11 | 63.2 |
| Msa0525530 | MtrunA17_Chr7g0239511 | 30.709 | 127 | 87 | 1 | 66 | 191 | 75 | 201 | 4.88e-11 | 62.0 |
| Msa0525530 | MtrunA17_Chr7g0239501 | 33.028 | 109 | 73 | 0 | 85 | 193 | 95 | 203 | 8.55e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525530 | AT5G10050.1 | 66.912 | 272 | 90 | 0 | 11 | 282 | 5 | 276 | 1.24e-142 | 402 |
| Msa0525530 | AT5G65205.1 | 65.683 | 271 | 93 | 0 | 11 | 281 | 6 | 276 | 5.09e-141 | 399 |
| Msa0525530 | AT3G03330.1 | 27.985 | 268 | 159 | 6 | 15 | 270 | 45 | 290 | 4.00e-22 | 94.4 |
| Msa0525530 | AT5G50700.1 | 30.851 | 188 | 120 | 5 | 15 | 195 | 49 | 233 | 2.08e-21 | 92.8 |
| Msa0525530 | AT5G50600.1 | 30.851 | 188 | 120 | 5 | 15 | 195 | 49 | 233 | 2.08e-21 | 92.8 |
| Msa0525530 | AT2G17845.1 | 33.831 | 201 | 117 | 7 | 10 | 195 | 46 | 245 | 6.89e-19 | 85.1 |
| Msa0525530 | AT1G10310.1 | 32.843 | 204 | 124 | 6 | 16 | 209 | 20 | 220 | 8.02e-19 | 84.0 |
| Msa0525530 | AT3G55310.1 | 33.333 | 198 | 119 | 6 | 10 | 195 | 16 | 212 | 2.65e-18 | 83.2 |
| Msa0525530 | AT1G24360.1 | 32.990 | 194 | 123 | 4 | 8 | 195 | 71 | 263 | 6.50e-18 | 82.4 |
| Msa0525530 | AT1G62610.2 | 31.658 | 199 | 122 | 6 | 10 | 195 | 12 | 209 | 8.16e-18 | 81.6 |
| Msa0525530 | AT1G62610.1 | 31.658 | 199 | 122 | 6 | 10 | 195 | 13 | 210 | 8.87e-18 | 81.6 |
| Msa0525530 | AT1G62610.4 | 31.658 | 199 | 122 | 6 | 10 | 195 | 18 | 215 | 9.22e-18 | 81.6 |
| Msa0525530 | AT1G62610.3 | 31.658 | 199 | 122 | 6 | 10 | 195 | 14 | 211 | 9.46e-18 | 81.6 |
| Msa0525530 | AT1G63380.3 | 30.653 | 199 | 124 | 6 | 10 | 195 | 14 | 211 | 1.58e-17 | 80.9 |
| Msa0525530 | AT1G63380.4 | 30.653 | 199 | 124 | 6 | 10 | 195 | 18 | 215 | 1.62e-17 | 80.9 |
| Msa0525530 | AT1G63380.2 | 30.653 | 199 | 124 | 6 | 10 | 195 | 21 | 218 | 1.73e-17 | 80.9 |
| Msa0525530 | AT1G63380.1 | 30.653 | 199 | 124 | 6 | 10 | 195 | 16 | 213 | 1.76e-17 | 80.9 |
| Msa0525530 | AT3G55290.1 | 32.323 | 198 | 121 | 6 | 10 | 195 | 17 | 213 | 2.99e-17 | 80.1 |
| Msa0525530 | AT3G55290.2 | 32.323 | 198 | 121 | 6 | 10 | 195 | 16 | 212 | 3.01e-17 | 80.1 |
| Msa0525530 | AT3G47360.1 | 29.000 | 200 | 128 | 6 | 5 | 195 | 39 | 233 | 9.72e-17 | 79.0 |
| Msa0525530 | AT5G50590.1 | 30.332 | 211 | 135 | 7 | 15 | 218 | 49 | 254 | 2.60e-16 | 77.8 |
| Msa0525530 | AT5G50690.1 | 30.332 | 211 | 135 | 7 | 15 | 218 | 49 | 254 | 2.60e-16 | 77.8 |
| Msa0525530 | AT5G50590.2 | 31.937 | 191 | 118 | 7 | 15 | 198 | 49 | 234 | 8.04e-16 | 75.5 |
| Msa0525530 | AT5G50690.2 | 31.937 | 191 | 118 | 7 | 15 | 198 | 49 | 234 | 8.04e-16 | 75.5 |
| Msa0525530 | AT1G52340.1 | 31.019 | 216 | 134 | 6 | 15 | 218 | 22 | 234 | 1.43e-15 | 75.5 |
| Msa0525530 | AT1G54870.1 | 31.863 | 204 | 118 | 6 | 5 | 191 | 73 | 272 | 2.52e-15 | 75.5 |
| Msa0525530 | AT1G54870.2 | 31.863 | 204 | 118 | 6 | 5 | 191 | 75 | 274 | 2.65e-15 | 75.5 |
| Msa0525530 | AT3G46170.1 | 30.808 | 198 | 124 | 7 | 10 | 195 | 25 | 221 | 6.67e-15 | 73.6 |
| Msa0525530 | AT3G05260.1 | 30.526 | 190 | 115 | 4 | 15 | 191 | 41 | 226 | 1.65e-14 | 72.4 |
| Msa0525530 | AT3G47350.1 | 27.895 | 190 | 123 | 6 | 15 | 195 | 48 | 232 | 2.01e-14 | 72.4 |
| Msa0525530 | AT1G67730.1 | 29.353 | 201 | 108 | 6 | 17 | 195 | 55 | 243 | 2.08e-14 | 72.4 |
| Msa0525530 | AT3G03350.1 | 41.176 | 85 | 50 | 0 | 109 | 193 | 182 | 266 | 3.19e-14 | 71.6 |
| Msa0525530 | AT5G50770.1 | 30.851 | 188 | 120 | 5 | 15 | 195 | 49 | 233 | 3.50e-14 | 72.0 |
| Msa0525530 | AT3G03350.2 | 41.176 | 85 | 50 | 0 | 109 | 193 | 268 | 352 | 4.42e-14 | 72.0 |
| Msa0525530 | AT3G47350.2 | 27.895 | 190 | 123 | 6 | 15 | 195 | 48 | 232 | 4.67e-14 | 71.6 |
| Msa0525530 | AT2G47130.1 | 30.612 | 196 | 127 | 5 | 6 | 195 | 2 | 194 | 2.89e-13 | 68.6 |
| Msa0525530 | AT4G03140.1 | 28.495 | 186 | 124 | 4 | 15 | 194 | 82 | 264 | 1.13e-12 | 67.8 |
| Msa0525530 | AT3G26770.1 | 25.604 | 207 | 139 | 6 | 15 | 211 | 45 | 246 | 1.15e-12 | 67.4 |
| Msa0525530 | AT3G51680.1 | 31.100 | 209 | 129 | 5 | 1 | 195 | 20 | 227 | 1.37e-12 | 67.0 |
| Msa0525530 | AT3G29250.3 | 29.648 | 199 | 131 | 5 | 3 | 195 | 35 | 230 | 2.56e-12 | 66.2 |
| Msa0525530 | AT3G29260.1 | 30.348 | 201 | 126 | 6 | 11 | 205 | 7 | 199 | 3.88e-12 | 65.5 |
| Msa0525530 | AT3G29250.2 | 29.592 | 196 | 129 | 5 | 6 | 195 | 2 | 194 | 8.22e-12 | 64.3 |
| Msa0525530 | AT3G29250.1 | 29.843 | 191 | 125 | 5 | 11 | 195 | 45 | 232 | 1.07e-11 | 64.7 |
| Msa0525530 | AT4G10020.1 | 26.482 | 253 | 157 | 10 | 15 | 254 | 51 | 287 | 1.32e-11 | 64.7 |
| Msa0525530 | AT4G20760.1 | 26.667 | 225 | 133 | 10 | 15 | 212 | 45 | 264 | 1.66e-11 | 63.9 |
| Msa0525530 | AT4G20760.2 | 26.667 | 225 | 133 | 10 | 15 | 212 | 65 | 284 | 1.81e-11 | 63.9 |
| Msa0525530 | AT5G51030.1 | 33.784 | 148 | 88 | 6 | 12 | 152 | 36 | 180 | 3.07e-11 | 63.2 |
| Msa0525530 | AT3G06060.1 | 29.944 | 177 | 118 | 3 | 17 | 188 | 43 | 218 | 4.30e-11 | 62.8 |
| Msa0525530 | AT3G06060.2 | 29.944 | 177 | 118 | 3 | 17 | 188 | 60 | 235 | 4.86e-11 | 62.8 |
Find 95 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTGGAACTTGGAAATTT+TGG | 0.076726 | 3_4:+79063531 | Msa0525530:intron |
| ACCCGTGCTGTCTATCTTTA+TGG | 0.108696 | 3_4:+79063875 | Msa0525530:three_prime_UTR |
| AGTTCTTGAAGAAAGAATTT+AGG | 0.187004 | 3_4:-79060729 | None:intergenic |
| ACGTTTGATACTAACGTATT+TGG | 0.203077 | 3_4:+79060894 | Msa0525530:CDS |
| GTACAAAGAATGATAAATTT+AGG | 0.233092 | 3_4:-79064027 | None:intergenic |
| AATAATGTTCTAGATAAATT+TGG | 0.248184 | 3_4:+79060789 | Msa0525530:CDS |
| CGTTAGTATCAAACGTGTTT+TGG | 0.252956 | 3_4:-79060887 | None:intergenic |
| ATGCTTTGACAGATACATTA+AGG | 0.281542 | 3_4:+79061669 | Msa0525530:CDS |
| GTTCTTGAAGAAAGAATTTA+GGG | 0.282188 | 3_4:-79060728 | None:intergenic |
| GATCTTCTCCATTGTGTATA+GGG | 0.297309 | 3_4:-79060547 | None:intergenic |
| ACGTTCAACCATGGCGGATT+TGG | 0.307727 | 3_4:+79060698 | Msa0525530:CDS |
| TGATCTTCTCCATTGTGTAT+AGG | 0.311318 | 3_4:-79060548 | None:intergenic |
| ATATCGGGGAATGTCTTGTT+AGG | 0.336576 | 3_4:+79063940 | Msa0525530:three_prime_UTR |
| AAGTCAAATATTGGAAATTC+CGG | 0.338697 | 3_4:+79063588 | Msa0525530:CDS |
| TCACATGGCAACTAGGAAAC+AGG | 0.363828 | 3_4:+79061562 | Msa0525530:CDS |
| AGTGTTGCTGGGTTGGCATC+TGG | 0.375364 | 3_4:+79061605 | Msa0525530:CDS |
| AAATTGTACTCCACTTTGAT+AGG | 0.376924 | 3_4:+79063912 | Msa0525530:three_prime_UTR |
| CTCTAACACAGAGAGGTAAA+TGG | 0.378798 | 3_4:-79063815 | None:intergenic |
| CTCCGGCATGCGGTTGTAGA+TGG | 0.385536 | 3_4:-79063616 | None:intergenic |
| TCTCGGATTGCCGCTTCAAA+TGG | 0.399494 | 3_4:-79063654 | None:intergenic |
| GGAGCTGTGAAGTCAAATAT+TGG | 0.400907 | 3_4:+79063579 | Msa0525530:CDS |
| GTTAACGTTGGAAGTGTTGC+TGG | 0.406103 | 3_4:+79061593 | Msa0525530:CDS |
| CTGGGTTGGCATCTGGACCT+TGG | 0.422583 | 3_4:+79061612 | Msa0525530:CDS |
| CAGCCATGACAGTAGAATAA+TGG | 0.425148 | 3_4:-79063785 | None:intergenic |
| GGTTGCAGCGGAGGAGGTAT+AGG | 0.425422 | 3_4:+79060615 | Msa0525530:CDS |
| ATATTTGACTTCACAGCTCC+AGG | 0.429584 | 3_4:-79063576 | None:intergenic |
| ACTTTGATAGGAGATAATAT+CGG | 0.430979 | 3_4:+79063924 | Msa0525530:three_prime_UTR |
| CGTTTAGCAAACTCGTCTGT+AGG | 0.435097 | 3_4:-79063711 | None:intergenic |
| GCACCGTAGCTGCTGTCCTT+AGG | 0.465314 | 3_4:+79063733 | Msa0525530:CDS |
| AACTCTGTTCACGCTTTCAT+CGG | 0.468082 | 3_4:-79060763 | None:intergenic |
| GTTTAGCAAACTCGTCTGTA+GGG | 0.475638 | 3_4:-79063710 | None:intergenic |
| CGTTGGAAGTGTTGCTGGGT+TGG | 0.478666 | 3_4:+79061598 | Msa0525530:CDS |
| CTTTGATAGGAGATAATATC+GGG | 0.481313 | 3_4:+79063925 | Msa0525530:three_prime_UTR |
| TCAACAAACAGATTGGAACT+TGG | 0.486654 | 3_4:+79063522 | Msa0525530:intron |
| ATGCAGGTGGTTTCTTCCTA+AGG | 0.489801 | 3_4:-79063749 | None:intergenic |
| AAACCAGTGGTTCTCATCAC+AGG | 0.491991 | 3_4:+79060594 | Msa0525530:CDS |
| ACAATGAAGTTGCAACATCA+TGG | 0.498618 | 3_4:-79064001 | None:intergenic |
| TTGGCATCTGGACCTTGGAA+TGG | 0.498857 | 3_4:+79061617 | Msa0525530:CDS |
| GTTGTTTGTGAATGTAACAA+TGG | 0.501868 | 3_4:-79060520 | None:intergenic |
| ATCACAGGTTGCAGCGGAGG+AGG | 0.503558 | 3_4:+79060609 | Msa0525530:CDS |
| AGGAACCATGAGAATGGTCC+AGG | 0.505024 | 3_4:+79061529 | Msa0525530:intron |
| TTTGCAGCTGTTAGCTGCGA+AGG | 0.507590 | 3_4:-79060655 | None:intergenic |
| TAGTTCCTCACATGGCAACT+AGG | 0.516282 | 3_4:+79061555 | Msa0525530:CDS |
| GCAAAGTGGTTGCAACCAGC+AGG | 0.517343 | 3_4:+79060673 | Msa0525530:CDS |
| CTTCCTAAGGACAGCAGCTA+CGG | 0.519587 | 3_4:-79063736 | None:intergenic |
| GCGGTTGTAGATGGCTATGC+CGG | 0.519784 | 3_4:-79063607 | None:intergenic |
| TTGTTTGTGAATGTAACAAT+GGG | 0.519832 | 3_4:-79060519 | None:intergenic |
| CTATGCTAGCTAGACTTGGC+TGG | 0.527735 | 3_4:+79060473 | Msa0525530:five_prime_UTR |
| CTCATCACAGGTTGCAGCGG+AGG | 0.528829 | 3_4:+79060606 | Msa0525530:CDS |
| TATCGGGGAATGTCTTGTTA+GGG | 0.530722 | 3_4:+79063941 | Msa0525530:three_prime_UTR |
| CAGGCTATGCTAGCTAGACT+TGG | 0.531268 | 3_4:+79060469 | None:intergenic |
| CCATGTGAGGAACTACAGCC+TGG | 0.541278 | 3_4:-79061547 | None:intergenic |
| AACGCTGGTGTTCTTTGTGT+GGG | 0.556188 | 3_4:+79060834 | Msa0525530:CDS |
| CATGGTTGAACGTGACCTGC+TGG | 0.557065 | 3_4:-79060688 | None:intergenic |
| TAACGCTGGTGTTCTTTGTG+TGG | 0.562477 | 3_4:+79060833 | Msa0525530:CDS |
| CAATGAAGTTGCAACATCAT+GGG | 0.562902 | 3_4:-79064000 | None:intergenic |
| CAACCTGTGATGAGAACCAC+TGG | 0.563963 | 3_4:-79060597 | None:intergenic |
| TGGCCATTATTCTACTGTCA+TGG | 0.567137 | 3_4:+79063782 | Msa0525530:CDS |
| CCACCTGCATGGTTCTCGTA+TGG | 0.567655 | 3_4:+79063762 | Msa0525530:CDS |
| TGTTTCCTAGTTGCCATGTG+AGG | 0.571163 | 3_4:-79061560 | None:intergenic |
| GATATTATCTCCTATCAAAG+TGG | 0.575218 | 3_4:-79063922 | None:intergenic |
| GAGAGCGGAACTTCAGCAAG+TGG | 0.579771 | 3_4:-79060858 | None:intergenic |
| TGGCCATACGAGAACCATGC+AGG | 0.580164 | 3_4:-79063765 | None:intergenic |
| CCAGGCTGTAGTTCCTCACA+TGG | 0.580243 | 3_4:+79061547 | Msa0525530:CDS |
| GAGAAAATAGAGCTCTCTCT+CGG | 0.580696 | 3_4:-79063671 | None:intergenic |
| CGCAGCTAACAGCTGCAAAG+TGG | 0.582001 | 3_4:+79060659 | Msa0525530:CDS |
| CTCCATAAAGATAGACAGCA+CGG | 0.586157 | 3_4:-79063877 | None:intergenic |
| TTAACGTTGGAAGTGTTGCT+GGG | 0.587244 | 3_4:+79061594 | Msa0525530:CDS |
| CACATGGCAACTAGGAAACA+GGG | 0.588117 | 3_4:+79061563 | Msa0525530:CDS |
| GATGTTGTGAATGTTCTCCC+TGG | 0.591417 | 3_4:+79063558 | Msa0525530:CDS |
| ATGTGCAGGAACCATGAGAA+TGG | 0.591626 | 3_4:+79061523 | Msa0525530:intron |
| GCACTGTAAGCACCATTCCA+AGG | 0.593829 | 3_4:-79061629 | None:intergenic |
| CAGGGAAAGATTGTTAACGT+TGG | 0.595293 | 3_4:+79061581 | Msa0525530:CDS |
| TTTAGCAAACTCGTCTGTAG+GGG | 0.599552 | 3_4:-79063709 | None:intergenic |
| TATTTGACTTCACAGCTCCA+GGG | 0.603014 | 3_4:-79063575 | None:intergenic |
| CAAAGAATGATAAATTTAGG+AGG | 0.603486 | 3_4:-79064024 | None:intergenic |
| GATGTTCTTGTAAATAACGC+TGG | 0.609735 | 3_4:+79060819 | Msa0525530:CDS |
| TACAGCCTGGACCATTCTCA+TGG | 0.615109 | 3_4:-79061534 | None:intergenic |
| ACTATTCAAACCATTTGAAG+CGG | 0.616573 | 3_4:+79063644 | Msa0525530:CDS |
| AGCCATCTACAACCGCATGC+CGG | 0.618672 | 3_4:+79063614 | Msa0525530:CDS |
| GGTTTGAATAGTTTCCACTC+CGG | 0.618933 | 3_4:-79063633 | None:intergenic |
| ATAGTTTCCACTCCGGCATG+CGG | 0.621048 | 3_4:-79063626 | None:intergenic |
| TTAGGAAGAAACCACCTGCA+TGG | 0.623601 | 3_4:+79063751 | Msa0525530:CDS |
| TCAAGAAGATTCAAAACCAG+TGG | 0.624130 | 3_4:+79060581 | Msa0525530:CDS |
| GTCTTGATCCAAATCCGCCA+TGG | 0.629951 | 3_4:-79060706 | None:intergenic |
| CAACAACACCCTATACACAA+TGG | 0.636258 | 3_4:+79060539 | Msa0525530:exon |
| GTTCTCATCACAGGTTGCAG+CGG | 0.636969 | 3_4:+79060603 | Msa0525530:CDS |
| AGAGCGGAACTTCAGCAAGT+GGG | 0.638323 | 3_4:-79060857 | None:intergenic |
| TCCATAAAGATAGACAGCAC+GGG | 0.643776 | 3_4:-79063876 | None:intergenic |
| TCTACAACCGCATGCCGGAG+TGG | 0.644601 | 3_4:+79063619 | Msa0525530:CDS |
| CAGCAGGTCACGTTCAACCA+TGG | 0.654260 | 3_4:+79060689 | Msa0525530:CDS |
| AGAAAGTCTCTAACACAGAG+AGG | 0.683130 | 3_4:-79063822 | None:intergenic |
| CAGGTCACGTTCAACCATGG+CGG | 0.709328 | 3_4:+79060692 | Msa0525530:CDS |
| CCATACGAGAACCATGCAGG+TGG | 0.716141 | 3_4:-79063762 | None:intergenic |
| TTTGATAGGAGATAATATCG+GGG | 0.748100 | 3_4:+79063926 | Msa0525530:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTCTCAAAATTTAAT+CGG | + | chr3_4:79061232-79061251 | Msa0525530:intron | 10.0% |
| !!! | AATAATGTTCTAGATAAATT+TGG | + | chr3_4:79060789-79060808 | Msa0525530:CDS | 15.0% |
| !! | TATTTATCAATGTTGTTAAT+AGG | + | chr3_4:79061460-79061479 | Msa0525530:intron | 15.0% |
| !!! | TTTCAAACTTGTTTTAATTT+TGG | + | chr3_4:79061700-79061719 | Msa0525530:intron | 15.0% |
| !! | AAGTTAATTGAGTTTATTAA+CGG | + | chr3_4:79062747-79062766 | Msa0525530:intron | 15.0% |
| !! | ACTATATTCATATTCATATT+AGG | + | chr3_4:79063357-79063376 | Msa0525530:intron | 15.0% |
| !!! | TATTATTTTATTTTGTGCAT+TGG | + | chr3_4:79064060-79064079 | Msa0525530:three_prime_UTR | 15.0% |
| !!! | TTAATTCTAGTTTTGTTTGT+TGG | + | chr3_4:79061014-79061033 | Msa0525530:intron | 20.0% |
| !!! | ATTGAAGTTTCTTTTGTTTT+GGG | - | chr3_4:79061356-79061375 | None:intergenic | 20.0% |
| !! | AAGAACCAAAAAATACATTT+CGG | - | chr3_4:79062051-79062070 | None:intergenic | 20.0% |
| !! | TCATGCAATTACATTAAAAA+AGG | - | chr3_4:79062100-79062119 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTATCTTCTTCAT+AGG | - | chr3_4:79062364-79062383 | None:intergenic | 20.0% |
| !! | TATGAAGAAGATAAAAGAAA+AGG | + | chr3_4:79062363-79062382 | Msa0525530:intron | 20.0% |
| !! | ATGAAGAAGATAAAAGAAAA+GGG | + | chr3_4:79062364-79062383 | Msa0525530:intron | 20.0% |
| !!! | TTTTTTTATGCAGTATACTT+TGG | - | chr3_4:79062526-79062545 | None:intergenic | 20.0% |
| !! | GCAACTACAAAATTAAATAA+TGG | - | chr3_4:79063454-79063473 | None:intergenic | 20.0% |
| !! | ATAAAGGAAAAAAGTCAATT+TGG | - | chr3_4:79063480-79063499 | None:intergenic | 20.0% |
| !! | GTACAAAGAATGATAAATTT+AGG | - | chr3_4:79064030-79064049 | None:intergenic | 20.0% |
| !!! | GTTTTAAACTTCTTCATTTG+TGG | - | chr3_4:79060500-79060519 | None:intergenic | 25.0% |
| ! | TTGTTTGTGAATGTAACAAT+GGG | - | chr3_4:79060522-79060541 | None:intergenic | 25.0% |
| ! | GTTCTTGAAGAAAGAATTTA+GGG | - | chr3_4:79060731-79060750 | None:intergenic | 25.0% |
| ! | AGTTCTTGAAGAAAGAATTT+AGG | - | chr3_4:79060732-79060751 | None:intergenic | 25.0% |
| !!! | TTCTTTTGAAGAATGAGAAT+GGG | + | chr3_4:79061095-79061114 | Msa0525530:intron | 25.0% |
| ! | TGTATTCAGTTCATTTATGT+TGG | + | chr3_4:79061325-79061344 | Msa0525530:intron | 25.0% |
| !!! | CATTGAAGTTTCTTTTGTTT+TGG | - | chr3_4:79061357-79061376 | None:intergenic | 25.0% |
| ! | TTTGAATCAAATGAACCATA+TGG | + | chr3_4:79061737-79061756 | Msa0525530:intron | 25.0% |
| ! | AGATTTCTATAACTTCCATA+TGG | - | chr3_4:79061755-79061774 | None:intergenic | 25.0% |
| !! | TCGGTTCAAAATATTGTTTT+TGG | - | chr3_4:79062032-79062051 | None:intergenic | 25.0% |
| !!! | TTGAACCGAAATGTATTTTT+TGG | + | chr3_4:79062043-79062062 | Msa0525530:intron | 25.0% |
| ! | TTGGAGTTCTTAATCTATAT+TGG | + | chr3_4:79062180-79062199 | Msa0525530:intron | 25.0% |
| ! | TGGAGTTCTTAATCTATATT+GGG | + | chr3_4:79062181-79062200 | Msa0525530:intron | 25.0% |
| !! | TACCTGTTTTCATGTTTAAT+TGG | + | chr3_4:79062238-79062257 | Msa0525530:intron | 25.0% |
| ! | ATAGATTTCTACCTATTGAT+TGG | + | chr3_4:79062283-79062302 | Msa0525530:intron | 25.0% |
| !!! | TTCTTTTTTAGCCAATCAAT+AGG | - | chr3_4:79062297-79062316 | None:intergenic | 25.0% |
| !! | TTGGCTAAAAAAGAAGTATA+TGG | + | chr3_4:79062302-79062321 | Msa0525530:intron | 25.0% |
| ! | AATTGAGTTTATTAACGGTT+CGG | + | chr3_4:79062752-79062771 | Msa0525530:intron | 25.0% |
| ! | GTTAACCGTTATCAAAATAA+TGG | + | chr3_4:79062783-79062802 | Msa0525530:intron | 25.0% |
| ! | ATCAAATTAACACATTGATC+CGG | - | chr3_4:79062979-79062998 | None:intergenic | 25.0% |
| ! | TGAAATGAAATAGTTCATGA+TGG | + | chr3_4:79063083-79063102 | Msa0525530:intron | 25.0% |
| ! | TGAACTATTTCATAAGTGAA+AGG | - | chr3_4:79063187-79063206 | None:intergenic | 25.0% |
| ! | ACTTATGAAATAGTTCATGA+TGG | + | chr3_4:79063190-79063209 | Msa0525530:intron | 25.0% |
| ! | TATTAGGTATTACAGTACTA+AGG | + | chr3_4:79063373-79063392 | Msa0525530:intron | 25.0% |
| !!! | GTTATTTTCAACAAACAGAT+TGG | + | chr3_4:79063515-79063534 | Msa0525530:intron | 25.0% |
| ! | AAGTCAAATATTGGAAATTC+CGG | + | chr3_4:79063588-79063607 | Msa0525530:CDS | 25.0% |
| ! | ACTTTGATAGGAGATAATAT+CGG | + | chr3_4:79063924-79063943 | Msa0525530:three_prime_UTR | 25.0% |
| ! | CAAAGAATGATAAATTTAGG+AGG | - | chr3_4:79064027-79064046 | None:intergenic | 25.0% |
| GTTGTTTGTGAATGTAACAA+TGG | - | chr3_4:79060523-79060542 | None:intergenic | 30.0% | |
| ACGTTTGATACTAACGTATT+TGG | + | chr3_4:79060894-79060913 | Msa0525530:CDS | 30.0% | |
| TTGATACTAACGTATTTGGT+TGG | + | chr3_4:79060898-79060917 | Msa0525530:intron | 30.0% | |
| ! | TTTGTTTGTTGGATTGATGT+TGG | + | chr3_4:79061025-79061044 | Msa0525530:intron | 30.0% |
| !! | GTTCTTTTGAAGAATGAGAA+TGG | + | chr3_4:79061094-79061113 | Msa0525530:intron | 30.0% |
| TCAGTTCATTTATGTTGGTA+TGG | + | chr3_4:79061330-79061349 | Msa0525530:intron | 30.0% | |
| TTACTAGTACCAAGTACAAT+TGG | + | chr3_4:79061418-79061437 | Msa0525530:intron | 30.0% | |
| TACTAGTACCAAGTACAATT+GGG | + | chr3_4:79061419-79061438 | Msa0525530:intron | 30.0% | |
| ATGCTTTGACAGATACATTA+AGG | + | chr3_4:79061669-79061688 | Msa0525530:CDS | 30.0% | |
| !! | TAGAGATTTTTGCTTTGTTG+TGG | + | chr3_4:79061786-79061805 | Msa0525530:intron | 30.0% |
| ACTATTTCAACAATTCGGTT+CGG | - | chr3_4:79061914-79061933 | None:intergenic | 30.0% | |
| ACCGAATTGTTGAAATAGTT+TGG | + | chr3_4:79061915-79061934 | Msa0525530:intron | 30.0% | |
| CCCAAACTATTTCAACAATT+CGG | - | chr3_4:79061919-79061938 | None:intergenic | 30.0% | |
| CCGAATTGTTGAAATAGTTT+GGG | + | chr3_4:79061916-79061935 | Msa0525530:intron | 30.0% | |
| TCAGTTCGTAGGTAATAAAA+TGG | - | chr3_4:79062008-79062027 | None:intergenic | 30.0% | |
| GTTGTTTACAAATGTTGTGA+TGG | + | chr3_4:79062145-79062164 | Msa0525530:intron | 30.0% | |
| ! | AAATGTTGTGATGGAATTTG+AGG | + | chr3_4:79062154-79062173 | Msa0525530:intron | 30.0% |
| ATCTATATTGGGCACAATAT+AGG | + | chr3_4:79062192-79062211 | Msa0525530:intron | 30.0% | |
| GTCCAATTAAACATGAAAAC+AGG | - | chr3_4:79062243-79062262 | None:intergenic | 30.0% | |
| !!! | TACTTTTTCTCTTTCAGACT+TGG | + | chr3_4:79062448-79062467 | Msa0525530:intron | 30.0% |
| !! | ACTTTTTCTCTTTCAGACTT+GGG | + | chr3_4:79062449-79062468 | Msa0525530:intron | 30.0% |
| !!! | CCGATCCATTATTTTGATAA+CGG | - | chr3_4:79062791-79062810 | None:intergenic | 30.0% |
| !! | CCGTTATCAAAATAATGGAT+CGG | + | chr3_4:79062788-79062807 | Msa0525530:intron | 30.0% |
| !!! | TGAAATGGTTCGGTTAATTT+TGG | + | chr3_4:79062823-79062842 | Msa0525530:intron | 30.0% |
| ACTTAAACCAGTGATTTCTA+GGG | - | chr3_4:79062885-79062904 | None:intergenic | 30.0% | |
| AACTTAAACCAGTGATTTCT+AGG | - | chr3_4:79062886-79062905 | None:intergenic | 30.0% | |
| ! | TTGATGAAAGTGTAATCTAG+CGG | + | chr3_4:79062994-79063013 | Msa0525530:intron | 30.0% |
| !! | TACTCATAAAGTACTGTGTA+GGG | - | chr3_4:79063031-79063050 | None:intergenic | 30.0% |
| !! | TTACTCATAAAGTACTGTGT+AGG | - | chr3_4:79063032-79063051 | None:intergenic | 30.0% |
| !!! | TGTTTTTTGCAATGTTCACT+TGG | - | chr3_4:79063058-79063077 | None:intergenic | 30.0% |
| !! | TGTTTAGAAGTATCAGATTG+AGG | + | chr3_4:79063324-79063343 | Msa0525530:intron | 30.0% |
| CAACAACATGTAAGACATAA+AGG | - | chr3_4:79063496-79063515 | None:intergenic | 30.0% | |
| ! | AGATTGGAACTTGGAAATTT+TGG | + | chr3_4:79063531-79063550 | Msa0525530:intron | 30.0% |
| ACTATTCAAACCATTTGAAG+CGG | + | chr3_4:79063644-79063663 | Msa0525530:CDS | 30.0% | |
| AAATTGTACTCCACTTTGAT+AGG | + | chr3_4:79063912-79063931 | Msa0525530:three_prime_UTR | 30.0% | |
| GATATTATCTCCTATCAAAG+TGG | - | chr3_4:79063925-79063944 | None:intergenic | 30.0% | |
| CTTTGATAGGAGATAATATC+GGG | + | chr3_4:79063925-79063944 | Msa0525530:three_prime_UTR | 30.0% | |
| TTTGATAGGAGATAATATCG+GGG | + | chr3_4:79063926-79063945 | Msa0525530:three_prime_UTR | 30.0% | |
| GATCTTCTCCATTGTGTATA+GGG | - | chr3_4:79060550-79060569 | None:intergenic | 35.0% | |
| TGATCTTCTCCATTGTGTAT+AGG | - | chr3_4:79060551-79060570 | None:intergenic | 35.0% | |
| TCAAGAAGATTCAAAACCAG+TGG | + | chr3_4:79060581-79060600 | Msa0525530:CDS | 35.0% | |
| GATGTTCTTGTAAATAACGC+TGG | + | chr3_4:79060819-79060838 | Msa0525530:CDS | 35.0% | |
| ! | CGTTAGTATCAAACGTGTTT+TGG | - | chr3_4:79060890-79060909 | None:intergenic | 35.0% |
| GAAGTTGAAAAGTAGTTGTC+TGG | + | chr3_4:79061051-79061070 | Msa0525530:intron | 35.0% | |
| !!! | AAAGTAGTTGTCTGGCTTTT+TGG | + | chr3_4:79061059-79061078 | Msa0525530:intron | 35.0% |
| ! | AATGGGTTTGATGCTCAAAA+AGG | + | chr3_4:79061112-79061131 | Msa0525530:intron | 35.0% |
| ATGGGTTTGATGCTCAAAAA+GGG | + | chr3_4:79061113-79061132 | Msa0525530:intron | 35.0% | |
| TGTTTACACCCAATTGTACT+TGG | - | chr3_4:79061430-79061449 | None:intergenic | 35.0% | |
| GTACAATTGGGTGTAAACAA+AGG | + | chr3_4:79061431-79061450 | Msa0525530:intron | 35.0% | |
| TGAAGGAAACCTTGGTTTAA+CGG | + | chr3_4:79061815-79061834 | Msa0525530:intron | 35.0% | |
| CATGTCAACAGAAATCACTA+GGG | + | chr3_4:79061855-79061874 | Msa0525530:intron | 35.0% | |
| ATGTCAACAGAAATCACTAG+GGG | + | chr3_4:79061856-79061875 | Msa0525530:intron | 35.0% | |
| ! | AAGTTTGGTTCAGTTTGGTT+CGG | - | chr3_4:79061972-79061991 | None:intergenic | 35.0% |
| ACCAAACTGAACCAAACTTA+TGG | + | chr3_4:79061973-79061992 | Msa0525530:intron | 35.0% | |
| ! | ACCATAAGTTTGGTTCAGTT+TGG | - | chr3_4:79061977-79061996 | None:intergenic | 35.0% |
| ACTGAACCAAACTTATGGTT+CGG | + | chr3_4:79061978-79061997 | Msa0525530:intron | 35.0% | |
| !!! | TTGTTTTTGGTTCAGTTCGT+AGG | - | chr3_4:79062019-79062038 | None:intergenic | 35.0% |
| ! | TCGAAGATTTTTGCAACACT+TGG | + | chr3_4:79062123-79062142 | Msa0525530:intron | 35.0% |
| TTAATTGGACTGTGCTTAGT+CGG | + | chr3_4:79062253-79062272 | Msa0525530:intron | 35.0% | |
| AGTACATGTTTAGTCCAGTT+CGG | - | chr3_4:79062592-79062611 | None:intergenic | 35.0% | |
| TATCAAACTGCCTAGAAACA+TGG | + | chr3_4:79062705-79062724 | Msa0525530:intron | 35.0% | |
| GAACCATTAACCATGTTTCT+AGG | - | chr3_4:79062718-79062737 | None:intergenic | 35.0% | |
| !! | AGTTTATTAACGGTTCGGTT+CGG | + | chr3_4:79062757-79062776 | Msa0525530:intron | 35.0% |
| ! | TAATGGATCGGTTCAAGAAT+TGG | + | chr3_4:79062800-79062819 | Msa0525530:intron | 35.0% |
| CAAGAATTGGTGAAATGGTT+CGG | + | chr3_4:79062813-79062832 | Msa0525530:intron | 35.0% | |
| !! | CGGTTAATTTTGGTCCAATT+CGG | + | chr3_4:79062833-79062852 | Msa0525530:intron | 35.0% |
| !! | AATTTTGGTCCAATTCGGTT+TGG | + | chr3_4:79062838-79062857 | Msa0525530:intron | 35.0% |
| ! | CTTAAACCAGTGATTTCTAG+GGG | - | chr3_4:79062884-79062903 | None:intergenic | 35.0% |
| !! | CTTTTAGAGATAGTCTGATC+CGG | + | chr3_4:79062957-79062976 | Msa0525530:intron | 35.0% |
| TTAGATGCCTTTCACTTTCA+AGG | + | chr3_4:79063284-79063303 | Msa0525530:intron | 35.0% | |
| GTTTAGTCCTTGAAAGTGAA+AGG | - | chr3_4:79063294-79063313 | None:intergenic | 35.0% | |
| GATGCAACAATACACCATTT+GGG | + | chr3_4:79063409-79063428 | Msa0525530:intron | 35.0% | |
| ! | ACAATACACCATTTGGGATT+TGG | + | chr3_4:79063415-79063434 | Msa0525530:intron | 35.0% |
| TCAACAAACAGATTGGAACT+TGG | + | chr3_4:79063522-79063541 | Msa0525530:intron | 35.0% | |
| CAATGAAGTTGCAACATCAT+GGG | - | chr3_4:79064003-79064022 | None:intergenic | 35.0% | |
| ACAATGAAGTTGCAACATCA+TGG | - | chr3_4:79064004-79064023 | None:intergenic | 35.0% | |
| CAACAACACCCTATACACAA+TGG | + | chr3_4:79060539-79060558 | Msa0525530:exon | 40.0% | |
| AACTCTGTTCACGCTTTCAT+CGG | - | chr3_4:79060766-79060785 | None:intergenic | 40.0% | |
| AAGCACAAATACTCGGATAC+TGG | - | chr3_4:79061263-79061282 | None:intergenic | 40.0% | |
| TCCGAGTATTTGTGCTTCAT+AGG | + | chr3_4:79061266-79061285 | Msa0525530:intron | 40.0% | |
| CCCTATGAAGCACAAATACT+CGG | - | chr3_4:79061270-79061289 | None:intergenic | 40.0% | |
| CCGAGTATTTGTGCTTCATA+GGG | + | chr3_4:79061267-79061286 | Msa0525530:intron | 40.0% | |
| ATATCACTCCATACATGTGC+AGG | + | chr3_4:79061509-79061528 | Msa0525530:intron | 40.0% | |
| CAGGGAAAGATTGTTAACGT+TGG | + | chr3_4:79061581-79061600 | Msa0525530:CDS | 40.0% | |
| !! | TTAACGTTGGAAGTGTTGCT+GGG | + | chr3_4:79061594-79061613 | Msa0525530:CDS | 40.0% |
| ACTGTAACACCGTTAAACCA+AGG | - | chr3_4:79061827-79061846 | None:intergenic | 40.0% | |
| CCTAGTGATTTCTGTTGACA+TGG | - | chr3_4:79061857-79061876 | None:intergenic | 40.0% | |
| CCATGTCAACAGAAATCACT+AGG | + | chr3_4:79061854-79061873 | Msa0525530:intron | 40.0% | |
| ! | AAACCGAACCGTTTAAGGTT+TGG | + | chr3_4:79061940-79061959 | Msa0525530:intron | 40.0% |
| GTTCCAAACCTTAAACGGTT+CGG | - | chr3_4:79061946-79061965 | None:intergenic | 40.0% | |
| GGTTCGTTCCAAACCTTAAA+CGG | - | chr3_4:79061951-79061970 | None:intergenic | 40.0% | |
| GGTTAACCGAACCATAAGTT+TGG | - | chr3_4:79061987-79062006 | None:intergenic | 40.0% | |
| TTGTTATGCTTACACCGAAC+TGG | + | chr3_4:79062575-79062594 | Msa0525530:intron | 40.0% | |
| ! | ACACGCGTTCTGTTCATTTT+AGG | - | chr3_4:79062685-79062704 | None:intergenic | 40.0% |
| CTGCCTAGAAACATGGTTAA+TGG | + | chr3_4:79062712-79062731 | Msa0525530:intron | 40.0% | |
| CGGTTCAAGAATTGGTGAAA+TGG | + | chr3_4:79062808-79062827 | Msa0525530:intron | 40.0% | |
| AACCAAGAACCAAACCGAAT+TGG | - | chr3_4:79062850-79062869 | None:intergenic | 40.0% | |
| AAGTGTAATCTAGCGGAGTT+TGG | + | chr3_4:79063001-79063020 | Msa0525530:intron | 40.0% | |
| ! | ACAGTACTAAGGCCAAGTTT+TGG | + | chr3_4:79063384-79063403 | Msa0525530:intron | 40.0% |
| TTGTTGCATCCACCAAAACT+TGG | - | chr3_4:79063399-79063418 | None:intergenic | 40.0% | |
| GGATGCAACAATACACCATT+TGG | + | chr3_4:79063408-79063427 | Msa0525530:intron | 40.0% | |
| ! | ATACACCATTTGGGATTTGG+TGG | + | chr3_4:79063418-79063437 | Msa0525530:intron | 40.0% |
| ! | TATTTGACTTCACAGCTCCA+GGG | - | chr3_4:79063578-79063597 | None:intergenic | 40.0% |
| ! | ATATTTGACTTCACAGCTCC+AGG | - | chr3_4:79063579-79063598 | None:intergenic | 40.0% |
| GGAGCTGTGAAGTCAAATAT+TGG | + | chr3_4:79063579-79063598 | Msa0525530:CDS | 40.0% | |
| GGTTTGAATAGTTTCCACTC+CGG | - | chr3_4:79063636-79063655 | None:intergenic | 40.0% | |
| GAGAAAATAGAGCTCTCTCT+CGG | - | chr3_4:79063674-79063693 | None:intergenic | 40.0% | |
| ! | AGAGAGAGCTCTATTTTCTC+AGG | + | chr3_4:79063674-79063693 | Msa0525530:CDS | 40.0% |
| ! | GAGAGAGCTCTATTTTCTCA+GGG | + | chr3_4:79063675-79063694 | Msa0525530:CDS | 40.0% |
| ! | AGAGAGCTCTATTTTCTCAG+GGG | + | chr3_4:79063676-79063695 | Msa0525530:CDS | 40.0% |
| TTTAGCAAACTCGTCTGTAG+GGG | - | chr3_4:79063712-79063731 | None:intergenic | 40.0% | |
| GTTTAGCAAACTCGTCTGTA+GGG | - | chr3_4:79063713-79063732 | None:intergenic | 40.0% | |
| TGGCCATTATTCTACTGTCA+TGG | + | chr3_4:79063782-79063801 | Msa0525530:CDS | 40.0% | |
| CAGCCATGACAGTAGAATAA+TGG | - | chr3_4:79063788-79063807 | None:intergenic | 40.0% | |
| CTCTAACACAGAGAGGTAAA+TGG | - | chr3_4:79063818-79063837 | None:intergenic | 40.0% | |
| AGAAAGTCTCTAACACAGAG+AGG | - | chr3_4:79063825-79063844 | None:intergenic | 40.0% | |
| TCCATAAAGATAGACAGCAC+GGG | - | chr3_4:79063879-79063898 | None:intergenic | 40.0% | |
| CTCCATAAAGATAGACAGCA+CGG | - | chr3_4:79063880-79063899 | None:intergenic | 40.0% | |
| ! | ATATCGGGGAATGTCTTGTT+AGG | + | chr3_4:79063940-79063959 | Msa0525530:three_prime_UTR | 40.0% |
| ! | TATCGGGGAATGTCTTGTTA+GGG | + | chr3_4:79063941-79063960 | Msa0525530:three_prime_UTR | 40.0% |
| AAACCAGTGGTTCTCATCAC+AGG | + | chr3_4:79060594-79060613 | Msa0525530:CDS | 45.0% | |
| TAACGCTGGTGTTCTTTGTG+TGG | + | chr3_4:79060833-79060852 | Msa0525530:CDS | 45.0% | |
| AACGCTGGTGTTCTTTGTGT+GGG | + | chr3_4:79060834-79060853 | Msa0525530:CDS | 45.0% | |
| !! | GTGTTTTGGATTGCAGAGAG+CGG | - | chr3_4:79060876-79060895 | None:intergenic | 45.0% |
| GCGCAGACAATTCTGTTTGA+AGG | + | chr3_4:79061152-79061171 | Msa0525530:intron | 45.0% | |
| GTCGAACACTGACACATGTT+GGG | - | chr3_4:79061190-79061209 | None:intergenic | 45.0% | |
| TGTCGAACACTGACACATGT+TGG | - | chr3_4:79061191-79061210 | None:intergenic | 45.0% | |
| TCATGGTTCCTGCACATGTA+TGG | - | chr3_4:79061520-79061539 | None:intergenic | 45.0% | |
| ATGTGCAGGAACCATGAGAA+TGG | + | chr3_4:79061523-79061542 | Msa0525530:intron | 45.0% | |
| TAGTTCCTCACATGGCAACT+AGG | + | chr3_4:79061555-79061574 | Msa0525530:CDS | 45.0% | |
| TGTTTCCTAGTTGCCATGTG+AGG | - | chr3_4:79061563-79061582 | None:intergenic | 45.0% | |
| TCACATGGCAACTAGGAAAC+AGG | + | chr3_4:79061562-79061581 | Msa0525530:CDS | 45.0% | |
| CACATGGCAACTAGGAAACA+GGG | + | chr3_4:79061563-79061582 | Msa0525530:CDS | 45.0% | |
| !! | GTTAACGTTGGAAGTGTTGC+TGG | + | chr3_4:79061593-79061612 | Msa0525530:CDS | 45.0% |
| ! | CTTTGTTGTGGTGTACGTGA+AGG | + | chr3_4:79061798-79061817 | Msa0525530:intron | 45.0% |
| TCAACAGAAATCACTAGGGG+TGG | + | chr3_4:79061859-79061878 | Msa0525530:intron | 45.0% | |
| CAACAGAAATCACTAGGGGT+GGG | + | chr3_4:79061860-79061879 | Msa0525530:intron | 45.0% | |
| TGGGAAAACCGAACCGTTTA+AGG | + | chr3_4:79061935-79061954 | Msa0525530:intron | 45.0% | |
| ! | GTGATGGAATTTGAGGCACT+TGG | + | chr3_4:79062161-79062180 | Msa0525530:intron | 45.0% |
| !! | GTCCAATTCGGTTTGGTTCT+TGG | + | chr3_4:79062845-79062864 | Msa0525530:intron | 45.0% |
| ! | AACCAGTGATTTCTAGGGGT+GGG | - | chr3_4:79062880-79062899 | None:intergenic | 45.0% |
| ! | AAACCAGTGATTTCTAGGGG+TGG | - | chr3_4:79062881-79062900 | None:intergenic | 45.0% |
| GTATCAGATTGAGGCTCTAC+TGG | + | chr3_4:79063333-79063352 | Msa0525530:intron | 45.0% | |
| !! | GTACTAAGGCCAAGTTTTGG+TGG | + | chr3_4:79063387-79063406 | Msa0525530:intron | 45.0% |
| GATGTTGTGAATGTTCTCCC+TGG | + | chr3_4:79063558-79063577 | Msa0525530:CDS | 45.0% | |
| CGTTTAGCAAACTCGTCTGT+AGG | - | chr3_4:79063714-79063733 | None:intergenic | 45.0% | |
| ATGCAGGTGGTTTCTTCCTA+AGG | - | chr3_4:79063752-79063771 | None:intergenic | 45.0% | |
| TTAGGAAGAAACCACCTGCA+TGG | + | chr3_4:79063751-79063770 | Msa0525530:CDS | 45.0% | |
| ACCCGTGCTGTCTATCTTTA+TGG | + | chr3_4:79063875-79063894 | Msa0525530:three_prime_UTR | 45.0% | |
| CTATGCTAGCTAGACTTGGC+TGG | + | chr3_4:79060473-79060492 | Msa0525530:five_prime_UTR | 50.0% | |
| CAACCTGTGATGAGAACCAC+TGG | - | chr3_4:79060600-79060619 | None:intergenic | 50.0% | |
| GTTCTCATCACAGGTTGCAG+CGG | + | chr3_4:79060603-79060622 | Msa0525530:CDS | 50.0% | |
| TTTGCAGCTGTTAGCTGCGA+AGG | - | chr3_4:79060658-79060677 | None:intergenic | 50.0% | |
| !! | ACGTTCAACCATGGCGGATT+TGG | + | chr3_4:79060698-79060717 | Msa0525530:CDS | 50.0% |
| GTCTTGATCCAAATCCGCCA+TGG | - | chr3_4:79060709-79060728 | None:intergenic | 50.0% | |
| AGAGCGGAACTTCAGCAAGT+GGG | - | chr3_4:79060860-79060879 | None:intergenic | 50.0% | |
| ! | TTCTGTTTGAAGGCGTGTCC+CGG | + | chr3_4:79061162-79061181 | Msa0525530:intron | 50.0% |
| AGGAACCATGAGAATGGTCC+AGG | + | chr3_4:79061529-79061548 | Msa0525530:intron | 50.0% | |
| TACAGCCTGGACCATTCTCA+TGG | - | chr3_4:79061537-79061556 | None:intergenic | 50.0% | |
| TTGGCATCTGGACCTTGGAA+TGG | + | chr3_4:79061617-79061636 | Msa0525530:CDS | 50.0% | |
| GCACTGTAAGCACCATTCCA+AGG | - | chr3_4:79061632-79061651 | None:intergenic | 50.0% | |
| GGTGTACGTGAAGGAAACCT+TGG | + | chr3_4:79061807-79061826 | Msa0525530:intron | 50.0% | |
| !! | ACCATTTGGGATTTGGTGGC+TGG | + | chr3_4:79063422-79063441 | Msa0525530:intron | 50.0% |
| TCCAGCCACCAAATCCCAAA+TGG | - | chr3_4:79063426-79063445 | None:intergenic | 50.0% | |
| ATAGTTTCCACTCCGGCATG+CGG | - | chr3_4:79063629-79063648 | None:intergenic | 50.0% | |
| ! | TCTCGGATTGCCGCTTCAAA+TGG | - | chr3_4:79063657-79063676 | None:intergenic | 50.0% |
| CTTCCTAAGGACAGCAGCTA+CGG | - | chr3_4:79063739-79063758 | None:intergenic | 50.0% | |
| CGCAGCTAACAGCTGCAAAG+TGG | + | chr3_4:79060659-79060678 | Msa0525530:CDS | 55.0% | |
| GCAAAGTGGTTGCAACCAGC+AGG | + | chr3_4:79060673-79060692 | Msa0525530:CDS | 55.0% | |
| CATGGTTGAACGTGACCTGC+TGG | - | chr3_4:79060691-79060710 | None:intergenic | 55.0% | |
| CAGCAGGTCACGTTCAACCA+TGG | + | chr3_4:79060689-79060708 | Msa0525530:CDS | 55.0% | |
| CAGGTCACGTTCAACCATGG+CGG | + | chr3_4:79060692-79060711 | Msa0525530:CDS | 55.0% | |
| GAGAGCGGAACTTCAGCAAG+TGG | - | chr3_4:79060861-79060880 | None:intergenic | 55.0% | |
| ACTGACACATGTTGGGCACC+GGG | - | chr3_4:79061183-79061202 | None:intergenic | 55.0% | |
| CACTGACACATGTTGGGCAC+CGG | - | chr3_4:79061184-79061203 | None:intergenic | 55.0% | |
| CCATGTGAGGAACTACAGCC+TGG | - | chr3_4:79061550-79061569 | None:intergenic | 55.0% | |
| CCAGGCTGTAGTTCCTCACA+TGG | + | chr3_4:79061547-79061566 | Msa0525530:CDS | 55.0% | |
| !! | CGTTGGAAGTGTTGCTGGGT+TGG | + | chr3_4:79061598-79061617 | Msa0525530:CDS | 55.0% |
| !! | AGTGTTGCTGGGTTGGCATC+TGG | + | chr3_4:79061605-79061624 | Msa0525530:CDS | 55.0% |
| GAAATCACTAGGGGTGGGCA+TGG | + | chr3_4:79061865-79061884 | Msa0525530:intron | 55.0% | |
| TGCCCACCCCTAGAAATCAC+TGG | + | chr3_4:79062875-79062894 | Msa0525530:intron | 55.0% | |
| GCGGTTGTAGATGGCTATGC+CGG | - | chr3_4:79063610-79063629 | None:intergenic | 55.0% | |
| AGCCATCTACAACCGCATGC+CGG | + | chr3_4:79063614-79063633 | Msa0525530:CDS | 55.0% | |
| CCATACGAGAACCATGCAGG+TGG | - | chr3_4:79063765-79063784 | None:intergenic | 55.0% | |
| CCACCTGCATGGTTCTCGTA+TGG | + | chr3_4:79063762-79063781 | Msa0525530:CDS | 55.0% | |
| TGGCCATACGAGAACCATGC+AGG | - | chr3_4:79063768-79063787 | None:intergenic | 55.0% | |
| CTCATCACAGGTTGCAGCGG+AGG | + | chr3_4:79060606-79060625 | Msa0525530:CDS | 60.0% | |
| ATCACAGGTTGCAGCGGAGG+AGG | + | chr3_4:79060609-79060628 | Msa0525530:CDS | 60.0% | |
| ! | GGTTGCAGCGGAGGAGGTAT+AGG | + | chr3_4:79060615-79060634 | Msa0525530:CDS | 60.0% |
| !! | CTGGGTTGGCATCTGGACCT+TGG | + | chr3_4:79061612-79061631 | Msa0525530:CDS | 60.0% |
| CACTAGGGGTGGGCATGGTT+TGG | + | chr3_4:79061870-79061889 | Msa0525530:intron | 60.0% | |
| CTCCGGCATGCGGTTGTAGA+TGG | - | chr3_4:79063619-79063638 | None:intergenic | 60.0% | |
| TCTACAACCGCATGCCGGAG+TGG | + | chr3_4:79063619-79063638 | Msa0525530:CDS | 60.0% | |
| GCACCGTAGCTGCTGTCCTT+AGG | + | chr3_4:79063733-79063752 | Msa0525530:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 79060471 | 79064111 | 79060471 | ID=Msa0525530;Name=Msa0525530 |
| chr3_4 | mRNA | 79060471 | 79064111 | 79060471 | ID=Msa0525530-mRNA-1;Parent=Msa0525530;Name=Msa0525530-mRNA-1;_AED=0.23;_eAED=0.23;_QI=87|1|1|1|1|1|3|242|284 |
| chr3_4 | exon | 79060471 | 79060915 | 79060471 | ID=Msa0525530-mRNA-1:exon:23625;Parent=Msa0525530-mRNA-1 |
| chr3_4 | exon | 79061531 | 79061690 | 79061531 | ID=Msa0525530-mRNA-1:exon:23626;Parent=Msa0525530-mRNA-1 |
| chr3_4 | exon | 79063533 | 79064111 | 79063533 | ID=Msa0525530-mRNA-1:exon:23627;Parent=Msa0525530-mRNA-1 |
| chr3_4 | five_prime_UTR | 79060471 | 79060557 | 79060471 | ID=Msa0525530-mRNA-1:five_prime_utr;Parent=Msa0525530-mRNA-1 |
| chr3_4 | CDS | 79060558 | 79060915 | 79060558 | ID=Msa0525530-mRNA-1:cds;Parent=Msa0525530-mRNA-1 |
| chr3_4 | CDS | 79061531 | 79061690 | 79061531 | ID=Msa0525530-mRNA-1:cds;Parent=Msa0525530-mRNA-1 |
| chr3_4 | CDS | 79063533 | 79063869 | 79063533 | ID=Msa0525530-mRNA-1:cds;Parent=Msa0525530-mRNA-1 |
| chr3_4 | three_prime_UTR | 79063870 | 79064111 | 79063870 | ID=Msa0525530-mRNA-1:three_prime_utr;Parent=Msa0525530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
