AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0024330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0024330 MtrunA17_Chr1g0178361 97.712 306 6 1 1 306 1 305 0.0 608
Msa0024330 MtrunA17_Chr4g0017941 69.231 247 74 1 60 306 68 312 1.41e-124 358
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0024330 AT5G06130.2 68.874 302 88 3 10 306 15 315 6.03e-144 408
Msa0024330 AT5G06130.1 77.155 232 52 1 75 306 1 231 1.39e-129 368
Msa0024330 AT5G61670.2 69.880 249 73 1 58 306 61 307 8.15e-125 359
Msa0024330 AT5G61670.1 69.880 249 73 1 58 306 61 307 8.15e-125 359

Find 80 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACAAAATCTTTCTTCTTA+TGG 0.172110 1_1:+46777532 Msa0024330:CDS
ATATCTGCAATAATTGTATT+TGG 0.197063 1_1:+46778457 Msa0024330:CDS
ATGGCAGCTGGAGCTGAAAT+TGG 0.211679 1_1:+46779698 Msa0024330:intron
GGAATAGATGATGGAATTTC+CGG 0.218058 1_1:-46778065 None:intergenic
TTTGAACATTAATCCGATTT+CGG 0.296746 1_1:+46780194 Msa0024330:CDS
TTTCCAGCACCAGAGCAATT+TGG 0.301546 1_1:-46780267 None:intergenic
TTTAAAAGGGGCAAAGAAAA+TGG 0.310012 1_1:-46777232 None:intergenic
AATTATATTCAGTGTCAATA+TGG 0.322985 1_1:-46780643 None:intergenic
TGCATTTGCCTTTGCAACTA+AGG 0.340206 1_1:+46779760 Msa0024330:CDS
TAACTTTGGTGTGATTTCAT+TGG 0.363903 1_1:-46777328 None:intergenic
AGAGAAAGTATTCATTGGTT+TGG 0.367720 1_1:-46777166 None:intergenic
GGCAAATTGTTTGTCCTTGA+AGG 0.375190 1_1:+46776973 None:intergenic
CCCGAAAAGGATGCCACAAT+TGG 0.377796 1_1:-46779923 None:intergenic
TGTCCAACCTGCCTTTGCAC+TGG 0.394247 1_1:+46780400 Msa0024330:CDS
ATTAATCCGATTTCGGCATC+TGG 0.402233 1_1:+46780201 Msa0024330:CDS
CTATTGTCTGTTGTGTTGTT+CGG 0.403463 1_1:+46777065 Msa0024330:five_prime_UTR
GAAGGAGAGAAAGTATTCAT+TGG 0.405939 1_1:-46777171 None:intergenic
TTGAAGAAGCTCTATCTAAC+AGG 0.406814 1_1:+46778424 Msa0024330:CDS
ACAAAATCCTGAACCGTCTC+TGG 0.410773 1_1:-46777464 None:intergenic
TAGAATCATTGTATTGTGAA+TGG 0.414621 1_1:-46777124 None:intergenic
TGAAGGGCCAGAGACGGTTC+AGG 0.418010 1_1:+46777457 Msa0024330:CDS
TTTGGACACCTTGTCGTTGT+AGG 0.425866 1_1:-46780249 None:intergenic
CTCACCACATGAGGAAGAAA+AGG 0.428649 1_1:-46778086 None:intergenic
ATGGAACTAGGACAGAATTC+TGG 0.437091 1_1:-46780624 None:intergenic
GAAGTACCAGATGCCGAAAT+CGG 0.441052 1_1:-46780207 None:intergenic
TTCAGTACTGATGTTAATTG+AGG 0.445259 1_1:+46779964 Msa0024330:CDS
TGTCCAAATTGCTCTGGTGC+TGG 0.448257 1_1:+46780264 Msa0024330:CDS
TAGAGCTTCTTCAAAGTGTT+GGG 0.450361 1_1:-46778415 None:intergenic
CTGGAGCTGAAATTGGGTAT+AGG 0.452466 1_1:+46779705 Msa0024330:CDS
AGTCAAATGGATCAATTCTC+AGG 0.456133 1_1:-46780447 None:intergenic
AATCTTTCTTCTTATGGAAG+AGG 0.457917 1_1:+46777538 Msa0024330:CDS
TGCTCTTCTCCACAGGATGC+AGG 0.457995 1_1:+46777303 Msa0024330:CDS
TGCAAGTATTGCCTTGGAAC+TGG 0.458275 1_1:+46780019 Msa0024330:CDS
TACTTCTGTTAGACCCCTGC+AGG 0.461988 1_1:+46780224 Msa0024330:CDS
CATGTAAAGAATTAGTCAAA+TGG 0.467029 1_1:-46780460 None:intergenic
ATAGAGCTTCTTCAAAGTGT+TGG 0.477201 1_1:-46778416 None:intergenic
CTGCAATAATTGTATTTGGC+GGG 0.477772 1_1:+46778461 Msa0024330:CDS
AGCTATGAATGGTGGAAAGT+GGG 0.478179 1_1:-46777097 None:intergenic
TTTATGGATAGTGTCCTTCA+AGG 0.478667 1_1:-46776987 None:intergenic
CAGGTTACTTGGCTTGCGCT+CGG 0.481171 1_1:+46780151 Msa0024330:intron
GTCCAACCTGCCTTTGCACT+GGG 0.482552 1_1:+46780401 Msa0024330:CDS
GCCAACTGCTCCACCCGAAA+AGG 0.487934 1_1:-46779936 None:intergenic
TGGCAGCTGGAGCTGAAATT+GGG 0.494726 1_1:+46779699 Msa0024330:intron
GGAAGAAAAGGAATAGATGA+TGG 0.501221 1_1:-46778074 None:intergenic
TAGCTATGAATGGTGGAAAG+TGG 0.506702 1_1:-46777098 None:intergenic
TTGTCGTTGTAGGAACCTGC+AGG 0.508146 1_1:-46780239 None:intergenic
TATAGGTGGTACGTCATATG+AGG 0.517667 1_1:+46779722 Msa0024330:CDS
AAAGGTAGAATTGTGGAGGA+AGG 0.517842 1_1:-46777189 None:intergenic
CCGAAAAGGATGCCACAATT+GGG 0.520908 1_1:-46779922 None:intergenic
ACAAGGTGCAAGTATTGCCT+TGG 0.523158 1_1:+46780013 Msa0024330:CDS
TGCGCTCGGTGTTCCACAAG+TGG 0.528281 1_1:+46780165 Msa0024330:CDS
AATTGCGTGCTCTTCTCCAC+AGG 0.533626 1_1:+46777296 Msa0024330:CDS
ACAAGGTGTCCAAATTGCTC+TGG 0.537901 1_1:+46780258 Msa0024330:CDS
GTTCAAACATACACCACTTG+TGG 0.537962 1_1:-46780178 None:intergenic
ACAACAGACAATAGCAGCTA+AGG 0.549190 1_1:-46777056 None:intergenic
CTTCATCCCAGTGCAAAGGC+AGG 0.549940 1_1:-46780407 None:intergenic
AAATTGCTCTGGTGCTGGAA+AGG 0.553692 1_1:+46780269 Msa0024330:CDS
GGAAGATGCAAATGAGATGC+CGG 0.556353 1_1:+46778046 Msa0024330:CDS
TCTGCAATAATTGTATTTGG+CGG 0.560108 1_1:+46778460 Msa0024330:CDS
GGAGATTGCGTGTGCAGCAG+CGG 0.563072 1_1:+46777985 Msa0024330:CDS
ATAGCATACCTTAGTTGCAA+AGG 0.566228 1_1:-46779768 None:intergenic
TGAAGGGAAAGGTAGAATTG+TGG 0.569401 1_1:-46777196 None:intergenic
ATCCCAGTGCAAAGGCAGGT+TGG 0.571963 1_1:-46780403 None:intergenic
TGTCGTTGTAGGAACCTGCA+GGG 0.577519 1_1:-46780238 None:intergenic
TGAATGGAATTAGCTATGAA+TGG 0.579328 1_1:-46777108 None:intergenic
AACTAGGACAGAATTCTGGC+AGG 0.584086 1_1:-46780620 None:intergenic
TTCAGTGTCAATATGGAACT+AGG 0.585120 1_1:-46780636 None:intergenic
CATTATTGAAGGGCCAGAGA+CGG 0.585450 1_1:+46777451 Msa0024330:CDS
CAGTCAAGTTGACCCAATTG+TGG 0.589524 1_1:+46779910 Msa0024330:intron
CCTTTGCACTGGGATGAAGA+TGG 0.608589 1_1:+46780411 Msa0024330:CDS
TCATTGGAGCCTGCATCCTG+TGG 0.609087 1_1:-46777312 None:intergenic
GAGCTGAAATTGGGTATAGG+TGG 0.611943 1_1:+46779708 Msa0024330:CDS
AGGGAAAGGTAGAATTGTGG+AGG 0.616825 1_1:-46777193 None:intergenic
TGGCGGGCTTATTGCACCGA+CGG 0.621713 1_1:+46778477 Msa0024330:CDS
CCATCTTCATCCCAGTGCAA+AGG 0.623251 1_1:-46780411 None:intergenic
TTGAGCAACAAGAGAAAACA+AGG 0.624269 1_1:+46779996 Msa0024330:CDS
ATGGAATTAGCTATGAATGG+TGG 0.629375 1_1:-46777105 None:intergenic
GTAGAAACATACCAGTTCCA+AGG 0.632023 1_1:-46780030 None:intergenic
GTCGTTGTAGGAACCTGCAG+GGG 0.684640 1_1:-46780237 None:intergenic
TGCAGGTTCCTACAACGACA+AGG 0.684689 1_1:+46780241 Msa0024330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAAAAAATACTTTTTTTA+TGG - chr1_1:46777006-46777025 None:intergenic 10.0%
!!! ATATTAAATCCTTATTTTAA+TGG + chr1_1:46779679-46779698 Msa0024330:intron 10.0%
!!! TAAATTAATACTAAATTTTG+AGG - chr1_1:46780542-46780561 None:intergenic 10.0%
!! AAACAAAATAAAAATGAATA+AGG + chr1_1:46780567-46780586 Msa0024330:three_prime_UTR 10.0%
!! TTAACTTAGAAAAAGAAAAT+TGG - chr1_1:46777272-46777291 None:intergenic 15.0%
!!! AATTTTCTTTTTCTAAGTTA+AGG + chr1_1:46777271-46777290 Msa0024330:CDS 15.0%
!!! TTAGTTTTTTTTTGCTTATT+GGG + chr1_1:46777348-46777367 Msa0024330:intron 15.0%
!!! TTTTGAATAACTTATGAAAA+CGG - chr1_1:46777837-46777856 None:intergenic 15.0%
!!! AATTGTGACAATTTAAATTT+TGG + chr1_1:46778878-46778897 Msa0024330:intron 15.0%
!!! ATTGTGACAATTTAAATTTT+GGG + chr1_1:46778879-46778898 Msa0024330:intron 15.0%
!! ATTATAGAAAATAGCATAAA+GGG - chr1_1:46779008-46779027 None:intergenic 15.0%
!! AATTATAGAAAATAGCATAA+AGG - chr1_1:46779009-46779028 None:intergenic 15.0%
!!! ATAAAAAGTTTTTGAAATCA+AGG - chr1_1:46779099-46779118 None:intergenic 15.0%
!!! TTTGAAGAATTTAAAATTCT+AGG + chr1_1:46779345-46779364 Msa0024330:intron 15.0%
!!! TTATTTACCTTTAATTTAAG+TGG + chr1_1:46779571-46779590 Msa0024330:intron 15.0%
!!! ATATGTGTTTTTTTTTGTTT+AGG + chr1_1:46780372-46780391 Msa0024330:intron 15.0%
!! ATAAAAATGAATAAGGAATT+AGG + chr1_1:46780574-46780593 Msa0024330:three_prime_UTR 15.0%
!! AAGCAAAAAAAAACTAACTT+TGG - chr1_1:46777345-46777364 None:intergenic 20.0%
!!! GTTAGTTTTTTTTTGCTTAT+TGG + chr1_1:46777347-46777366 Msa0024330:intron 20.0%
!!! GTCAATTTTCATTCATATTA+TGG + chr1_1:46777601-46777620 Msa0024330:intron 20.0%
!! AACTTACTATAAGATATAAG+CGG - chr1_1:46777916-46777935 None:intergenic 20.0%
!! TAGTTTAAATAAGACACTTA+AGG + chr1_1:46778210-46778229 Msa0024330:intron 20.0%
!! ATATCTGCAATAATTGTATT+TGG + chr1_1:46778457-46778476 Msa0024330:CDS 20.0%
!! TTATTATCTCTATTTGTCAT+AGG + chr1_1:46778579-46778598 Msa0024330:intron 20.0%
!! AACATAGTGATACTTAATAA+GGG - chr1_1:46778624-46778643 None:intergenic 20.0%
!! TAACATAGTGATACTTAATA+AGG - chr1_1:46778625-46778644 None:intergenic 20.0%
!!! TTCTTATCATTTAAGATGAA+AGG - chr1_1:46778829-46778848 None:intergenic 20.0%
!! TTCATCTTAAATGATAAGAA+TGG + chr1_1:46778829-46778848 Msa0024330:intron 20.0%
!! TAAATGATAAGAATGGATAA+AGG + chr1_1:46778836-46778855 Msa0024330:intron 20.0%
!! AAATGATAAGAATGGATAAA+GGG + chr1_1:46778837-46778856 Msa0024330:intron 20.0%
!!! TTGTGACAATTTAAATTTTG+GGG + chr1_1:46778880-46778899 Msa0024330:intron 20.0%
!!! ACACTTATCTTTTAATCATT+TGG - chr1_1:46778975-46778994 None:intergenic 20.0%
!! ATTAGTAGTACATAAAGTAT+AGG + chr1_1:46779026-46779045 Msa0024330:intron 20.0%
!!! ATGTTAGTGATTAATTTGTT+AGG + chr1_1:46779133-46779152 Msa0024330:intron 20.0%
!! ATTTCTTTCTTTCTGATAAA+CGG - chr1_1:46779824-46779843 None:intergenic 20.0%
!!! AAATTTGTAATTTTATGGAC+AGG + chr1_1:46780132-46780151 Msa0024330:intron 20.0%
!! AATTAAACAGTTGCATATAT+CGG - chr1_1:46780314-46780333 None:intergenic 20.0%
!!! ATTAATACTAAATTTTGAGG+TGG - chr1_1:46780539-46780558 None:intergenic 20.0%
!! AATTATATTCAGTGTCAATA+TGG - chr1_1:46780646-46780665 None:intergenic 20.0%
! TAGAATCATTGTATTGTGAA+TGG - chr1_1:46777127-46777146 None:intergenic 25.0%
!!! TGGTTTTACTACCTTTAAAA+GGG - chr1_1:46777248-46777267 None:intergenic 25.0%
!!! TTGGTTTTACTACCTTTAAA+AGG - chr1_1:46777249-46777268 None:intergenic 25.0%
! CTTAGAAAAAGAAAATTGGT+TGG - chr1_1:46777268-46777287 None:intergenic 25.0%
! CAAAATTTAAACTTTGCAAC+TGG + chr1_1:46777387-46777406 Msa0024330:intron 25.0%
! CAACAAAATCTTTCTTCTTA+TGG + chr1_1:46777532-46777551 Msa0024330:CDS 25.0%
! TGACACTATTTAATGAACTA+TGG - chr1_1:46777585-46777604 None:intergenic 25.0%
!! GTTTTCATGTAACTTATAAG+CGG + chr1_1:46777736-46777755 Msa0024330:intron 25.0%
!! TTGTTTGGATTGACTTATTT+CGG - chr1_1:46777892-46777911 None:intergenic 25.0%
! AGTACTTAAAGATATTGGTA+TGG - chr1_1:46778162-46778181 None:intergenic 25.0%
! TCTTCAGTACTTAAAGATAT+TGG - chr1_1:46778167-46778186 None:intergenic 25.0%
! TTTGATAGATGAGAAACAAA+AGG - chr1_1:46778317-46778336 None:intergenic 25.0%
! TAAGACAATAAAATTACCGT+CGG - chr1_1:46778496-46778515 None:intergenic 25.0%
! ATACTTAATAAGGGTAACAA+AGG - chr1_1:46778615-46778634 None:intergenic 25.0%
! CACTATGTTAAGTTTAAATC+TGG + chr1_1:46778635-46778654 Msa0024330:intron 25.0%
!! ATCTTTTAATCATTTGGTCT+TGG - chr1_1:46778969-46778988 None:intergenic 25.0%
! GTAAATAAATGTGAGTGAAT+AGG - chr1_1:46779559-46779578 None:intergenic 25.0%
!! TTTGAAATGAATGTAGATCA+TGG - chr1_1:46779660-46779679 None:intergenic 25.0%
!! CAATTCTAGAAAGAATAGAA+AGG - chr1_1:46780101-46780120 None:intergenic 25.0%
! TTTGAACATTAATCCGATTT+CGG + chr1_1:46780194-46780213 Msa0024330:CDS 25.0%
! CATGTAAAGAATTAGTCAAA+TGG - chr1_1:46780463-46780482 None:intergenic 25.0%
TGAATGGAATTAGCTATGAA+TGG - chr1_1:46777111-46777130 None:intergenic 30.0%
!! AGAGAAAGTATTCATTGGTT+TGG - chr1_1:46777169-46777188 None:intergenic 30.0%
TTTAAAAGGGGCAAAGAAAA+TGG - chr1_1:46777235-46777254 None:intergenic 30.0%
! ATTTTCTTTGCCCCTTTTAA+AGG + chr1_1:46777234-46777253 Msa0024330:CDS 30.0%
!! GGTTTTACTACCTTTAAAAG+GGG - chr1_1:46777247-46777266 None:intergenic 30.0%
! TAACTTTGGTGTGATTTCAT+TGG - chr1_1:46777331-46777350 None:intergenic 30.0%
! AGCAACTTTTGCATTATTGA+AGG + chr1_1:46777440-46777459 Msa0024330:intron 30.0%
! GCAACTTTTGCATTATTGAA+GGG + chr1_1:46777441-46777460 Msa0024330:intron 30.0%
AATCTTTCTTCTTATGGAAG+AGG + chr1_1:46777538-46777557 Msa0024330:CDS 30.0%
!! CTTATTTTCATAAGTACTCC+AGG - chr1_1:46777776-46777795 None:intergenic 30.0%
TGACTAATGAGAAATGAGTA+TGG + chr1_1:46777955-46777974 Msa0024330:intron 30.0%
CCAATAGCTTAATCAAAACA+AGG - chr1_1:46778120-46778139 None:intergenic 30.0%
!!! CCTTGTTTTGATTAAGCTAT+TGG + chr1_1:46778117-46778136 Msa0024330:intron 30.0%
! TTAACTAATTCCGTGCTTTT+CGG + chr1_1:46778379-46778398 Msa0024330:intron 30.0%
TCTGCAATAATTGTATTTGG+CGG + chr1_1:46778460-46778479 Msa0024330:CDS 30.0%
AACAGACACTCAAGTAATTT+AGG - chr1_1:46778548-46778567 None:intergenic 30.0%
TGTTAAGTTTAAATCTGGCT+TGG + chr1_1:46778640-46778659 Msa0024330:intron 30.0%
!!! TTTAAATCTGGCTTGGATTT+TGG + chr1_1:46778647-46778666 Msa0024330:intron 30.0%
TAAAGTGAGAATTAAACCCA+AGG - chr1_1:46778688-46778707 None:intergenic 30.0%
! GATAAAAGTATGAGTGAACA+TGG - chr1_1:46778711-46778730 None:intergenic 30.0%
!! TTAATCATTTGGTCTTGGAA+AGG - chr1_1:46778964-46778983 None:intergenic 30.0%
TAGGAACTTTGTAAAATGAG+AGG + chr1_1:46779045-46779064 Msa0024330:intron 30.0%
AGGAACTTTGTAAAATGAGA+GGG + chr1_1:46779046-46779065 Msa0024330:intron 30.0%
!! AAAGAATTTGTTAGCACAGT+AGG + chr1_1:46779161-46779180 Msa0024330:intron 30.0%
!! AAGAATTTGTTAGCACAGTA+GGG + chr1_1:46779162-46779181 Msa0024330:intron 30.0%
!! ACTCTAAAGGAGTATTAAGA+AGG - chr1_1:46779205-46779224 None:intergenic 30.0%
! AGAAATCTTAAGAGTGTGTT+TGG + chr1_1:46779304-46779323 Msa0024330:intron 30.0%
GAGGAAATGTAATGTTATGA+GGG - chr1_1:46779396-46779415 None:intergenic 30.0%
TGAGGAAATGTAATGTTATG+AGG - chr1_1:46779397-46779416 None:intergenic 30.0%
TACGAGACCACTTAAATTAA+AGG - chr1_1:46779581-46779600 None:intergenic 30.0%
!! TTCAGTACTGATGTTAATTG+AGG + chr1_1:46779964-46779983 Msa0024330:CDS 30.0%
! AATTTTATGGACAGGTTACT+TGG + chr1_1:46780140-46780159 Msa0024330:intron 30.0%
! CTATTGTCTGTTGTGTTGTT+CGG + chr1_1:46777065-46777084 Msa0024330:five_prime_UTR 35.0%
ATGGAATTAGCTATGAATGG+TGG - chr1_1:46777108-46777127 None:intergenic 35.0%
!! GAAGGAGAGAAAGTATTCAT+TGG - chr1_1:46777174-46777193 None:intergenic 35.0%
!! TTTTTGGTATGTGAAGGGAA+AGG - chr1_1:46777210-46777229 None:intergenic 35.0%
!!! TGGAGTTTTTGGTATGTGAA+GGG - chr1_1:46777215-46777234 None:intergenic 35.0%
!!! ATGGAGTTTTTGGTATGTGA+AGG - chr1_1:46777216-46777235 None:intergenic 35.0%
! GGCAAAGAAAATGGAGTTTT+TGG - chr1_1:46777226-46777245 None:intergenic 35.0%
! TAAGATATAAGCGGCTTGTT+TGG - chr1_1:46777907-46777926 None:intergenic 35.0%
TAATGAGAAATGAGTATGGC+AGG + chr1_1:46777959-46777978 Msa0024330:intron 35.0%
! ACAAAGAGCTTTTAGTGAAG+AGG + chr1_1:46778019-46778038 Msa0024330:CDS 35.0%
! CAAAGAGCTTTTAGTGAAGA+GGG + chr1_1:46778020-46778039 Msa0024330:CDS 35.0%
!! GGAATAGATGATGGAATTTC+CGG - chr1_1:46778068-46778087 None:intergenic 35.0%
GGAAGAAAAGGAATAGATGA+TGG - chr1_1:46778077-46778096 None:intergenic 35.0%
! TATTCCTTTTCTTCCTCATG+TGG + chr1_1:46778082-46778101 Msa0024330:CDS 35.0%
!!! GTTTTAAAACTCACCACATG+AGG - chr1_1:46778098-46778117 None:intergenic 35.0%
!! GTATTCGAAATGAGAGCATT+TGG + chr1_1:46778345-46778364 Msa0024330:intron 35.0%
! TAGAGCTTCTTCAAAGTGTT+GGG - chr1_1:46778418-46778437 None:intergenic 35.0%
ATAGAGCTTCTTCAAAGTGT+TGG - chr1_1:46778419-46778438 None:intergenic 35.0%
TTGAAGAAGCTCTATCTAAC+AGG + chr1_1:46778424-46778443 Msa0024330:CDS 35.0%
CTGCAATAATTGTATTTGGC+GGG + chr1_1:46778461-46778480 Msa0024330:CDS 35.0%
GCATTTCACTATTGATCCTT+GGG + chr1_1:46778669-46778688 Msa0024330:intron 35.0%
AATCAGCAGCAAACTATAGT+AGG - chr1_1:46778744-46778763 None:intergenic 35.0%
AACTTTGTAAAATGAGAGGG+TGG + chr1_1:46779049-46779068 Msa0024330:intron 35.0%
!! AGAATTTGTTAGCACAGTAG+GGG + chr1_1:46779163-46779182 Msa0024330:intron 35.0%
!! CTAAAGGAGTATTAAGAAGG+AGG - chr1_1:46779202-46779221 None:intergenic 35.0%
TGTGTTTGGATGAGGTAATT+TGG + chr1_1:46779318-46779337 Msa0024330:intron 35.0%
GAGGGAATTCAAATACTTAG+AGG - chr1_1:46779378-46779397 None:intergenic 35.0%
GGGAATGTAATGTAATGTTG+AGG - chr1_1:46779415-46779434 None:intergenic 35.0%
GAATTCCATTGTTTGGATGA+GGG - chr1_1:46779435-46779454 None:intergenic 35.0%
TGAATTCCATTGTTTGGATG+AGG - chr1_1:46779436-46779455 None:intergenic 35.0%
TTGAGGTGAATTCCATTGTT+TGG - chr1_1:46779442-46779461 None:intergenic 35.0%
GAGGGAATTCAAATACTTTG+AGG - chr1_1:46779459-46779478 None:intergenic 35.0%
GAGGGAATGTAATGTTATGA+GGG - chr1_1:46779477-46779496 None:intergenic 35.0%
TGAGGGAATGTAATGTTATG+AGG - chr1_1:46779478-46779497 None:intergenic 35.0%
!!! ATCCTTATTTTAATGGCAGC+TGG + chr1_1:46779686-46779705 Msa0024330:intron 35.0%
ATAGCATACCTTAGTTGCAA+AGG - chr1_1:46779771-46779790 None:intergenic 35.0%
! ATGCCTGATCACAATTTGTT+TGG + chr1_1:46779877-46779896 Msa0024330:intron 35.0%
GAACCAAACAAATTGTGATC+AGG - chr1_1:46779883-46779902 None:intergenic 35.0%
TTGAGCAACAAGAGAAAACA+AGG + chr1_1:46779996-46780015 Msa0024330:CDS 35.0%
TTTCTACACTGAAGTTGAAC+TGG + chr1_1:46780046-46780065 Msa0024330:intron 35.0%
GCATATATCGGCAACAATTA+GGG - chr1_1:46780302-46780321 None:intergenic 35.0%
TGCATATATCGGCAACAATT+AGG - chr1_1:46780303-46780322 None:intergenic 35.0%
AGTCAAATGGATCAATTCTC+AGG - chr1_1:46780450-46780469 None:intergenic 35.0%
TTCAGTGTCAATATGGAACT+AGG - chr1_1:46780639-46780658 None:intergenic 35.0%
ACAACAGACAATAGCAGCTA+AGG - chr1_1:46777059-46777078 None:intergenic 40.0%
! AGCTATGAATGGTGGAAAGT+GGG - chr1_1:46777100-46777119 None:intergenic 40.0%
! TAGCTATGAATGGTGGAAAG+TGG - chr1_1:46777101-46777120 None:intergenic 40.0%
AAAGGTAGAATTGTGGAGGA+AGG - chr1_1:46777192-46777211 None:intergenic 40.0%
TGAAGGGAAAGGTAGAATTG+TGG - chr1_1:46777199-46777218 None:intergenic 40.0%
! TCAGGATTTTGTTCAGATGC+AGG + chr1_1:46777475-46777494 Msa0024330:CDS 40.0%
AGAAATGAGTATGGCAGGTT+AGG + chr1_1:46777964-46777983 Msa0024330:intron 40.0%
CTACTTCAATCCGAAAAGCA+CGG - chr1_1:46778392-46778411 None:intergenic 40.0%
GGCATTTCACTATTGATCCT+TGG + chr1_1:46778668-46778687 Msa0024330:intron 40.0%
! TGGGGTGCAAGTTTAGTTTA+AGG + chr1_1:46778898-46778917 Msa0024330:intron 40.0%
!! ATCATTTGGTCTTGGAAAGG+AGG - chr1_1:46778961-46778980 None:intergenic 40.0%
TTTCATAAATCAGACCCCGA+AGG - chr1_1:46779252-46779271 None:intergenic 40.0%
! CTTAAGAGTGTGTTTGGATG+AGG + chr1_1:46779310-46779329 Msa0024330:intron 40.0%
ACATTCCCTCATCCAAACAA+TGG + chr1_1:46779427-46779446 Msa0024330:intron 40.0%
CTCCAGCTGCCATTAAAATA+AGG - chr1_1:46779691-46779710 None:intergenic 40.0%
TATAGGTGGTACGTCATATG+AGG + chr1_1:46779722-46779741 Msa0024330:CDS 40.0%
TGCATTTGCCTTTGCAACTA+AGG + chr1_1:46779760-46779779 Msa0024330:CDS 40.0%
GTAGAAACATACCAGTTCCA+AGG - chr1_1:46780033-46780052 None:intergenic 40.0%
GTTCAAACATACACCACTTG+TGG - chr1_1:46780181-46780200 None:intergenic 40.0%
ATTAATCCGATTTCGGCATC+TGG + chr1_1:46780201-46780220 Msa0024330:CDS 40.0%
! AGACTTGCATTTTGTTGCTC+TGG + chr1_1:46780496-46780515 Msa0024330:three_prime_UTR 40.0%
ATGGAACTAGGACAGAATTC+TGG - chr1_1:46780627-46780646 None:intergenic 40.0%
AGGGAAAGGTAGAATTGTGG+AGG - chr1_1:46777196-46777215 None:intergenic 45.0%
CATTATTGAAGGGCCAGAGA+CGG + chr1_1:46777451-46777470 Msa0024330:CDS 45.0%
ACAAAATCCTGAACCGTCTC+TGG - chr1_1:46777467-46777486 None:intergenic 45.0%
! TTTTGTTCAGATGCAGGTGC+AGG + chr1_1:46777481-46777500 Msa0024330:CDS 45.0%
! AGCTTTTAGTGAAGAGGGAG+AGG + chr1_1:46778025-46778044 Msa0024330:CDS 45.0%
GGAAGATGCAAATGAGATGC+CGG + chr1_1:46778046-46778065 Msa0024330:CDS 45.0%
CTCACCACATGAGGAAGAAA+AGG - chr1_1:46778089-46778108 None:intergenic 45.0%
AGTATTAAGAAGGAGGACCC+AGG - chr1_1:46779195-46779214 None:intergenic 45.0%
!! TGGATGGGGGAATGTTTTGA+GGG - chr1_1:46779495-46779514 None:intergenic 45.0%
! TTGGATGGGGGAATGTTTTG+AGG - chr1_1:46779496-46779515 None:intergenic 45.0%
CTTAGAGTGTGTTTGGATGG+GGG - chr1_1:46779508-46779527 None:intergenic 45.0%
CCTTAGAGTGTGTTTGGATG+GGG - chr1_1:46779509-46779528 None:intergenic 45.0%
CCCTTAGAGTGTGTTTGGAT+GGG - chr1_1:46779510-46779529 None:intergenic 45.0%
CCCATCCAAACACACTCTAA+GGG + chr1_1:46779507-46779526 Msa0024330:intron 45.0%
ACCCTTAGAGTGTGTTTGGA+TGG - chr1_1:46779511-46779530 None:intergenic 45.0%
CTTCACCCTTAGAGTGTGTT+TGG - chr1_1:46779515-46779534 None:intergenic 45.0%
CTGGAGCTGAAATTGGGTAT+AGG + chr1_1:46779705-46779724 Msa0024330:CDS 45.0%
GAGCTGAAATTGGGTATAGG+TGG + chr1_1:46779708-46779727 Msa0024330:CDS 45.0%
CACAATTGGGTCAACTTGAC+TGG - chr1_1:46779912-46779931 None:intergenic 45.0%
!! CAGTCAAGTTGACCCAATTG+TGG + chr1_1:46779910-46779929 Msa0024330:intron 45.0%
CCGAAAAGGATGCCACAATT+GGG - chr1_1:46779925-46779944 None:intergenic 45.0%
! CCCAATTGTGGCATCCTTTT+CGG + chr1_1:46779922-46779941 Msa0024330:CDS 45.0%
! CCAATTGTGGCATCCTTTTC+GGG + chr1_1:46779923-46779942 Msa0024330:CDS 45.0%
! ACAAGGTGCAAGTATTGCCT+TGG + chr1_1:46780013-46780032 Msa0024330:CDS 45.0%
! TGCAAGTATTGCCTTGGAAC+TGG + chr1_1:46780019-46780038 Msa0024330:CDS 45.0%
! GAAGTACCAGATGCCGAAAT+CGG - chr1_1:46780210-46780229 None:intergenic 45.0%
TTTGGACACCTTGTCGTTGT+AGG - chr1_1:46780252-46780271 None:intergenic 45.0%
! ACAAGGTGTCCAAATTGCTC+TGG + chr1_1:46780258-46780277 Msa0024330:CDS 45.0%
TTTCCAGCACCAGAGCAATT+TGG - chr1_1:46780270-46780289 None:intergenic 45.0%
! AAATTGCTCTGGTGCTGGAA+AGG + chr1_1:46780269-46780288 Msa0024330:CDS 45.0%
AACTAGGACAGAATTCTGGC+AGG - chr1_1:46780623-46780642 None:intergenic 45.0%
!!! AAAACTTTTTATTTTTTTAT+AGG + chr1_1:46779107-46779126 Msa0024330:intron 5.0%
!!! TTATAAAATTTGTAATTTTA+TGG + chr1_1:46780127-46780146 Msa0024330:intron 5.0%
AATTGCGTGCTCTTCTCCAC+AGG + chr1_1:46777296-46777315 Msa0024330:CDS 50.0%
! GCGGTTTTCGTAAGCTATCC+TGG + chr1_1:46777755-46777774 Msa0024330:intron 50.0%
CACAGTAGGGGTCAAAACCT+GGG + chr1_1:46779175-46779194 Msa0024330:intron 50.0%
!! GGTATCGGTTGGGACTCTAA+AGG - chr1_1:46779218-46779237 None:intergenic 50.0%
CCCCATCCAAACACACTCTA+AGG + chr1_1:46779506-46779525 Msa0024330:intron 50.0%
ATGGCAGCTGGAGCTGAAAT+TGG + chr1_1:46779698-46779717 Msa0024330:intron 50.0%
TGGCAGCTGGAGCTGAAATT+GGG + chr1_1:46779699-46779718 Msa0024330:intron 50.0%
CCCGAAAAGGATGCCACAAT+TGG - chr1_1:46779926-46779945 None:intergenic 50.0%
!! ATTGTGGCATCCTTTTCGGG+TGG + chr1_1:46779926-46779945 Msa0024330:CDS 50.0%
TACTTCTGTTAGACCCCTGC+AGG + chr1_1:46780224-46780243 Msa0024330:CDS 50.0%
TGTCGTTGTAGGAACCTGCA+GGG - chr1_1:46780241-46780260 None:intergenic 50.0%
TTGTCGTTGTAGGAACCTGC+AGG - chr1_1:46780242-46780261 None:intergenic 50.0%
TGCAGGTTCCTACAACGACA+AGG + chr1_1:46780241-46780260 Msa0024330:CDS 50.0%
TGTCCAAATTGCTCTGGTGC+TGG + chr1_1:46780264-46780283 Msa0024330:CDS 50.0%
CCATCTTCATCCCAGTGCAA+AGG - chr1_1:46780414-46780433 None:intergenic 50.0%
CCTTTGCACTGGGATGAAGA+TGG + chr1_1:46780411-46780430 Msa0024330:CDS 50.0%
TGCTCTTCTCCACAGGATGC+AGG + chr1_1:46777303-46777322 Msa0024330:CDS 55.0%
TCATTGGAGCCTGCATCCTG+TGG - chr1_1:46777315-46777334 None:intergenic 55.0%
GCACAGTAGGGGTCAAAACC+TGG + chr1_1:46779174-46779193 Msa0024330:intron 55.0%
AAGGTGTACCCCAGCGGTAT+CGG - chr1_1:46779233-46779252 None:intergenic 55.0%
ATACCGCTGGGGTACACCTT+CGG + chr1_1:46779233-46779252 Msa0024330:intron 55.0%
!!! TCCTTTTCGGGTGGAGCAGT+TGG + chr1_1:46779935-46779954 Msa0024330:CDS 55.0%
!! CAGGTTACTTGGCTTGCGCT+CGG + chr1_1:46780151-46780170 Msa0024330:intron 55.0%
GTCGTTGTAGGAACCTGCAG+GGG - chr1_1:46780240-46780259 None:intergenic 55.0%
TGTCCAACCTGCCTTTGCAC+TGG + chr1_1:46780400-46780419 Msa0024330:CDS 55.0%
GTCCAACCTGCCTTTGCACT+GGG + chr1_1:46780401-46780420 Msa0024330:CDS 55.0%
ATCCCAGTGCAAAGGCAGGT+TGG - chr1_1:46780406-46780425 None:intergenic 55.0%
CTTCATCCCAGTGCAAAGGC+AGG - chr1_1:46780410-46780429 None:intergenic 55.0%
TGAAGGGCCAGAGACGGTTC+AGG + chr1_1:46777457-46777476 Msa0024330:CDS 60.0%
GGAGATTGCGTGTGCAGCAG+CGG + chr1_1:46777985-46778004 Msa0024330:CDS 60.0%
!! TGGCGGGCTTATTGCACCGA+CGG + chr1_1:46778477-46778496 Msa0024330:CDS 60.0%
AGAGTCCCAACCGATACCGC+TGG + chr1_1:46779220-46779239 Msa0024330:intron 60.0%
GAGTCCCAACCGATACCGCT+GGG + chr1_1:46779221-46779240 Msa0024330:intron 60.0%
AGTCCCAACCGATACCGCTG+GGG + chr1_1:46779222-46779241 Msa0024330:intron 60.0%
!! GTACCCCAGCGGTATCGGTT+GGG - chr1_1:46779228-46779247 None:intergenic 60.0%
!! TGTACCCCAGCGGTATCGGT+TGG - chr1_1:46779229-46779248 None:intergenic 60.0%
TACCGCTGGGGTACACCTTC+GGG + chr1_1:46779234-46779253 Msa0024330:intron 60.0%
GCCAACTGCTCCACCCGAAA+AGG - chr1_1:46779939-46779958 None:intergenic 60.0%
!! TGCGCTCGGTGTTCCACAAG+TGG + chr1_1:46780165-46780184 Msa0024330:CDS 60.0%
ACCGCTGGGGTACACCTTCG+GGG + chr1_1:46779235-46779254 Msa0024330:intron 65.0%
! ACCCCGAAGGTGTACCCCAG+CGG - chr1_1:46779239-46779258 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 46776988 46780695 46776988 ID=Msa0024330;Name=Msa0024330
chr1_1 mRNA 46776988 46780695 46776988 ID=Msa0024330-mRNA-1;Parent=Msa0024330;Name=Msa0024330-mRNA-1;_AED=0.10;_eAED=0.10;_QI=186|1|1|1|1|1|8|224|306
chr1_1 exon 46776988 46777346 46776988 ID=Msa0024330-mRNA-1:exon:13275;Parent=Msa0024330-mRNA-1
chr1_1 exon 46777442 46777559 46777442 ID=Msa0024330-mRNA-1:exon:13276;Parent=Msa0024330-mRNA-1
chr1_1 exon 46777981 46778103 46777981 ID=Msa0024330-mRNA-1:exon:13277;Parent=Msa0024330-mRNA-1
chr1_1 exon 46778412 46778498 46778412 ID=Msa0024330-mRNA-1:exon:13278;Parent=Msa0024330-mRNA-1
chr1_1 exon 46779705 46779781 46779705 ID=Msa0024330-mRNA-1:exon:13279;Parent=Msa0024330-mRNA-1
chr1_1 exon 46779913 46780040 46779913 ID=Msa0024330-mRNA-1:exon:13280;Parent=Msa0024330-mRNA-1
chr1_1 exon 46780154 46780290 46780154 ID=Msa0024330-mRNA-1:exon:13281;Parent=Msa0024330-mRNA-1
chr1_1 exon 46780394 46780695 46780394 ID=Msa0024330-mRNA-1:exon:13282;Parent=Msa0024330-mRNA-1
chr1_1 five_prime_UTR 46776988 46777173 46776988 ID=Msa0024330-mRNA-1:five_prime_utr;Parent=Msa0024330-mRNA-1
chr1_1 CDS 46777174 46777346 46777174 ID=Msa0024330-mRNA-1:cds;Parent=Msa0024330-mRNA-1
chr1_1 CDS 46777442 46777559 46777442 ID=Msa0024330-mRNA-1:cds;Parent=Msa0024330-mRNA-1
chr1_1 CDS 46777981 46778103 46777981 ID=Msa0024330-mRNA-1:cds;Parent=Msa0024330-mRNA-1
chr1_1 CDS 46778412 46778498 46778412 ID=Msa0024330-mRNA-1:cds;Parent=Msa0024330-mRNA-1
chr1_1 CDS 46779705 46779781 46779705 ID=Msa0024330-mRNA-1:cds;Parent=Msa0024330-mRNA-1
chr1_1 CDS 46779913 46780040 46779913 ID=Msa0024330-mRNA-1:cds;Parent=Msa0024330-mRNA-1
chr1_1 CDS 46780154 46780290 46780154 ID=Msa0024330-mRNA-1:cds;Parent=Msa0024330-mRNA-1
chr1_1 CDS 46780394 46780471 46780394 ID=Msa0024330-mRNA-1:cds;Parent=Msa0024330-mRNA-1
chr1_1 three_prime_UTR 46780472 46780695 46780472 ID=Msa0024330-mRNA-1:three_prime_utr;Parent=Msa0024330-mRNA-1
Gene Sequence

>Msa0024330

ATGAATACTTTCTCTCCTTCCTCCACAATTCTACCTTTCCCTTCACATACCAAAAACTCCATTTTCTTTGCCCCTTTTAAAGGTAGTAAAACCAACCAATTTTCTTTTTCTAAGTTAAGGATAATTGCGTGCTCTTCTCCACAGGATGCAGGCTCCAATGAAATCACACCAAACAACTTTTGCATTATTGAAGGGCCAGAGACGGTTCAGGATTTTGTTCAGATGCAGGTGCAGGAAATTCAAGATAATATAAAGAGTAGACGCAACAAAATCTTTCTTCTTATGGAAGAGGTTAGGAGATTGCGTGTGCAGCAGCGGCTAAGAAGTATACAAAGAGCTTTTAGTGAAGAGGGAGAGGAAGATGCAAATGAGATGCCGGAAATTCCATCATCTATTCCTTTTCTTCCTCATGTGACACCCAACACTTTGAAGAAGCTCTATCTAACAGGCGCATCATTCATATCTGCAATAATTGTATTTGGCGGGCTTATTGCACCGACGCTGGAGCTGAAATTGGGTATAGGTGGTACGTCATATGAGGATTTCATAAGAAGCTTGCATTTGCCTTTGCAACTAAGTCAAGTTGACCCAATTGTGGCATCCTTTTCGGGTGGAGCAGTTGGCGTGATTTCAGTACTGATGTTAATTGAGGCTAATAATGTTGAGCAACAAGAGAAAACAAGGTGCAAGTATTGCCTTGGAACTGGTTACTTGGCTTGCGCTCGGTGTTCCACAAGTGGTGTATGTTTGAACATTAATCCGATTTCGGCATCTGGTACTTCTGTTAGACCCCTGCAGGTTCCTACAACGACAAGGTGTCCAAATTGCTCTGGTGCTGGAAAGGTTATGTGTCCAACCTGCCTTTGCACTGGGATGAAGATGGCAAGTGAACATGACCTGAGAATTGATCCATTTGACTAA

Protein sequence

>Msa0024330

MNTFSPSSTILPFPSHTKNSIFFAPFKGSKTNQFSFSKLRIIACSSPQDAGSNEITPNNFCIIEGPETVQDFVQMQVQEIQDNIKSRRNKIFLLMEEVRRLRVQQRLRSIQRAFSEEGEEDANEMPEIPSSIPFLPHVTPNTLKKLYLTGASFISAIIVFGGLIAPTLELKLGIGGTSYEDFIRSLHLPLQLSQVDPIVASFSGGAVGVISVLMLIEANNVEQQEKTRCKYCLGTGYLACARCSTSGVCLNINPISASGTSVRPLQVPTTTRCPNCSGAGKVMCPTCLCTGMKMASEHDLRIDPFD*