AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0163410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163410 MtrunA17_Chr1g0178361 97.712 306 6 1 1 306 1 305 0.0 608
Msa0163410 MtrunA17_Chr4g0017941 69.231 247 74 1 60 306 68 312 1.41e-124 358
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163410 AT5G06130.2 68.874 302 88 3 10 306 15 315 6.03e-144 408
Msa0163410 AT5G06130.1 77.155 232 52 1 75 306 1 231 1.39e-129 368
Msa0163410 AT5G61670.2 69.880 249 73 1 58 306 61 307 8.15e-125 359
Msa0163410 AT5G61670.1 69.880 249 73 1 58 306 61 307 8.15e-125 359

Find 80 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACAAAATCTTTCTTCTTA+TGG 0.172110 1_4:+41567702 Msa0163410:CDS
ATATCTGCAATAATTGTATT+TGG 0.197063 1_4:+41568627 Msa0163410:CDS
ATGGCAGCTGGAGCTGAAAT+TGG 0.211679 1_4:+41569868 Msa0163410:intron
GGAATAGATGATGGAATTTC+CGG 0.218058 1_4:-41568235 None:intergenic
TTTGAACATTAATCCGATTT+CGG 0.296746 1_4:+41570364 Msa0163410:CDS
TTTCCAGCACCAGAGCAATT+TGG 0.301546 1_4:-41570437 None:intergenic
TTTAAAAGGGGCAAAGAAAA+TGG 0.310012 1_4:-41567402 None:intergenic
AATTATATTCAGTGTCAATA+TGG 0.322985 1_4:-41570813 None:intergenic
TGCATTTGCCTTTGCAACTA+AGG 0.340206 1_4:+41569930 Msa0163410:CDS
TAACTTTGGTGTGATTTCAT+TGG 0.363903 1_4:-41567498 None:intergenic
AGAGAAAGTATTCATTGGTT+TGG 0.367720 1_4:-41567336 None:intergenic
GGCAAATTGTTTGTCCTTGA+AGG 0.375190 1_4:+41567143 None:intergenic
CCCGAAAAGGATGCCACAAT+TGG 0.377796 1_4:-41570093 None:intergenic
TGTCCAACCTGCCTTTGCAC+TGG 0.394247 1_4:+41570570 Msa0163410:CDS
ATTAATCCGATTTCGGCATC+TGG 0.402233 1_4:+41570371 Msa0163410:CDS
CTATTGTCTGTTGTGTTGTT+CGG 0.403463 1_4:+41567235 Msa0163410:five_prime_UTR
GAAGGAGAGAAAGTATTCAT+TGG 0.405939 1_4:-41567341 None:intergenic
TTGAAGAAGCTCTATCTAAC+AGG 0.406814 1_4:+41568594 Msa0163410:CDS
ACAAAATCCTGAACCGTCTC+TGG 0.410773 1_4:-41567634 None:intergenic
TAGAATCATTGTATTGTGAA+TGG 0.414621 1_4:-41567294 None:intergenic
TGAAGGGCCAGAGACGGTTC+AGG 0.418010 1_4:+41567627 Msa0163410:CDS
TTTGGACACCTTGTCGTTGT+AGG 0.425866 1_4:-41570419 None:intergenic
CTCACCACATGAGGAAGAAA+AGG 0.428649 1_4:-41568256 None:intergenic
ATGGAACTAGGACAGAATTC+TGG 0.437091 1_4:-41570794 None:intergenic
GAAGTACCAGATGCCGAAAT+CGG 0.441052 1_4:-41570377 None:intergenic
TTCAGTACTGATGTTAATTG+AGG 0.445259 1_4:+41570134 Msa0163410:CDS
TGTCCAAATTGCTCTGGTGC+TGG 0.448257 1_4:+41570434 Msa0163410:CDS
TAGAGCTTCTTCAAAGTGTT+GGG 0.450361 1_4:-41568585 None:intergenic
CTGGAGCTGAAATTGGGTAT+AGG 0.452466 1_4:+41569875 Msa0163410:CDS
AGTCAAATGGATCAATTCTC+AGG 0.456133 1_4:-41570617 None:intergenic
AATCTTTCTTCTTATGGAAG+AGG 0.457917 1_4:+41567708 Msa0163410:CDS
TGCTCTTCTCCACAGGATGC+AGG 0.457995 1_4:+41567473 Msa0163410:CDS
TGCAAGTATTGCCTTGGAAC+TGG 0.458275 1_4:+41570189 Msa0163410:CDS
TACTTCTGTTAGACCCCTGC+AGG 0.461988 1_4:+41570394 Msa0163410:CDS
CATGTAAAGAATTAGTCAAA+TGG 0.467029 1_4:-41570630 None:intergenic
ATAGAGCTTCTTCAAAGTGT+TGG 0.477201 1_4:-41568586 None:intergenic
CTGCAATAATTGTATTTGGC+GGG 0.477772 1_4:+41568631 Msa0163410:CDS
AGCTATGAATGGTGGAAAGT+GGG 0.478179 1_4:-41567267 None:intergenic
TTTATGGATAGTGTCCTTCA+AGG 0.478667 1_4:-41567157 None:intergenic
CAGGTTACTTGGCTTGCGCT+CGG 0.481171 1_4:+41570321 Msa0163410:intron
GTCCAACCTGCCTTTGCACT+GGG 0.482552 1_4:+41570571 Msa0163410:CDS
GCCAACTGCTCCACCCGAAA+AGG 0.487934 1_4:-41570106 None:intergenic
TGGCAGCTGGAGCTGAAATT+GGG 0.494726 1_4:+41569869 Msa0163410:intron
GGAAGAAAAGGAATAGATGA+TGG 0.501221 1_4:-41568244 None:intergenic
TAGCTATGAATGGTGGAAAG+TGG 0.506702 1_4:-41567268 None:intergenic
TTGTCGTTGTAGGAACCTGC+AGG 0.508146 1_4:-41570409 None:intergenic
TATAGGTGGTACGTCATATG+AGG 0.517667 1_4:+41569892 Msa0163410:CDS
AAAGGTAGAATTGTGGAGGA+AGG 0.517842 1_4:-41567359 None:intergenic
CCGAAAAGGATGCCACAATT+GGG 0.520908 1_4:-41570092 None:intergenic
ACAAGGTGCAAGTATTGCCT+TGG 0.523158 1_4:+41570183 Msa0163410:CDS
TGCGCTCGGTGTTCCACAAG+TGG 0.528281 1_4:+41570335 Msa0163410:CDS
AATTGCGTGCTCTTCTCCAC+AGG 0.533626 1_4:+41567466 Msa0163410:CDS
ACAAGGTGTCCAAATTGCTC+TGG 0.537901 1_4:+41570428 Msa0163410:CDS
GTTCAAACATACACCACTTG+TGG 0.537962 1_4:-41570348 None:intergenic
ACAACAGACAATAGCAGCTA+AGG 0.549190 1_4:-41567226 None:intergenic
CTTCATCCCAGTGCAAAGGC+AGG 0.549940 1_4:-41570577 None:intergenic
AAATTGCTCTGGTGCTGGAA+AGG 0.553692 1_4:+41570439 Msa0163410:CDS
GGAAGATGCAAATGAGATGC+CGG 0.556353 1_4:+41568216 Msa0163410:CDS
TCTGCAATAATTGTATTTGG+CGG 0.560108 1_4:+41568630 Msa0163410:CDS
GGAGATTGCGTGTGCAGCAG+CGG 0.563072 1_4:+41568155 Msa0163410:CDS
ATAGCATACCTTAGTTGCAA+AGG 0.566228 1_4:-41569938 None:intergenic
TGAAGGGAAAGGTAGAATTG+TGG 0.569401 1_4:-41567366 None:intergenic
ATCCCAGTGCAAAGGCAGGT+TGG 0.571963 1_4:-41570573 None:intergenic
TGTCGTTGTAGGAACCTGCA+GGG 0.577519 1_4:-41570408 None:intergenic
TGAATGGAATTAGCTATGAA+TGG 0.579328 1_4:-41567278 None:intergenic
AACTAGGACAGAATTCTGGC+AGG 0.584086 1_4:-41570790 None:intergenic
TTCAGTGTCAATATGGAACT+AGG 0.585120 1_4:-41570806 None:intergenic
CATTATTGAAGGGCCAGAGA+CGG 0.585450 1_4:+41567621 Msa0163410:CDS
CAGTCAAGTTGACCCAATTG+TGG 0.589524 1_4:+41570080 Msa0163410:intron
CCTTTGCACTGGGATGAAGA+TGG 0.608589 1_4:+41570581 Msa0163410:CDS
TCATTGGAGCCTGCATCCTG+TGG 0.609087 1_4:-41567482 None:intergenic
GAGCTGAAATTGGGTATAGG+TGG 0.611943 1_4:+41569878 Msa0163410:CDS
AGGGAAAGGTAGAATTGTGG+AGG 0.616825 1_4:-41567363 None:intergenic
TGGCGGGCTTATTGCACCGA+CGG 0.621713 1_4:+41568647 Msa0163410:CDS
CCATCTTCATCCCAGTGCAA+AGG 0.623251 1_4:-41570581 None:intergenic
TTGAGCAACAAGAGAAAACA+AGG 0.624269 1_4:+41570166 Msa0163410:CDS
ATGGAATTAGCTATGAATGG+TGG 0.629375 1_4:-41567275 None:intergenic
GTAGAAACATACCAGTTCCA+AGG 0.632023 1_4:-41570200 None:intergenic
GTCGTTGTAGGAACCTGCAG+GGG 0.684640 1_4:-41570407 None:intergenic
TGCAGGTTCCTACAACGACA+AGG 0.684689 1_4:+41570411 Msa0163410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAAAAAATACTTTTTTTA+TGG - chr1_4:41567176-41567195 None:intergenic 10.0%
!!! ATATTAAATCCTTATTTTAA+TGG + chr1_4:41569849-41569868 Msa0163410:intron 10.0%
!!! TAAATTAATACTAAATTTTG+AGG - chr1_4:41570712-41570731 None:intergenic 10.0%
!! AAACAAAATAAAAATGAATA+AGG + chr1_4:41570737-41570756 Msa0163410:three_prime_UTR 10.0%
!! TTAACTTAGAAAAAGAAAAT+TGG - chr1_4:41567442-41567461 None:intergenic 15.0%
!!! AATTTTCTTTTTCTAAGTTA+AGG + chr1_4:41567441-41567460 Msa0163410:CDS 15.0%
!!! TTAGTTTTTTTTTGCTTATT+GGG + chr1_4:41567518-41567537 Msa0163410:intron 15.0%
!!! TTTTGAATAACTTATGAAAA+CGG - chr1_4:41568007-41568026 None:intergenic 15.0%
!!! AATTGTGACAATTTAAATTT+TGG + chr1_4:41569048-41569067 Msa0163410:intron 15.0%
!!! ATTGTGACAATTTAAATTTT+GGG + chr1_4:41569049-41569068 Msa0163410:intron 15.0%
!! ATTATAGAAAATAGCATAAA+GGG - chr1_4:41569178-41569197 None:intergenic 15.0%
!! AATTATAGAAAATAGCATAA+AGG - chr1_4:41569179-41569198 None:intergenic 15.0%
!!! ATAAAAAGTTTTTGAAATCA+AGG - chr1_4:41569269-41569288 None:intergenic 15.0%
!!! TTTGAAGAATTTAAAATTCT+AGG + chr1_4:41569515-41569534 Msa0163410:intron 15.0%
!!! TTATTTACCTTTAATTTAAG+TGG + chr1_4:41569741-41569760 Msa0163410:intron 15.0%
!!! ATATGTGTTTTTTTTTGTTT+AGG + chr1_4:41570542-41570561 Msa0163410:intron 15.0%
!! ATAAAAATGAATAAGGAATT+AGG + chr1_4:41570744-41570763 Msa0163410:three_prime_UTR 15.0%
!! AAGCAAAAAAAAACTAACTT+TGG - chr1_4:41567515-41567534 None:intergenic 20.0%
!!! GTTAGTTTTTTTTTGCTTAT+TGG + chr1_4:41567517-41567536 Msa0163410:intron 20.0%
!!! GTCAATTTTCATTCATATTA+TGG + chr1_4:41567771-41567790 Msa0163410:intron 20.0%
!! AACTTACTATAAGATATAAG+CGG - chr1_4:41568086-41568105 None:intergenic 20.0%
!! TAGTTTAAATAAGACACTTA+AGG + chr1_4:41568380-41568399 Msa0163410:intron 20.0%
!! ATATCTGCAATAATTGTATT+TGG + chr1_4:41568627-41568646 Msa0163410:CDS 20.0%
!! TTATTATCTCTATTTGTCAT+AGG + chr1_4:41568749-41568768 Msa0163410:intron 20.0%
!! AACATAGTGATACTTAATAA+GGG - chr1_4:41568794-41568813 None:intergenic 20.0%
!! TAACATAGTGATACTTAATA+AGG - chr1_4:41568795-41568814 None:intergenic 20.0%
!!! TTCTTATCATTTAAGATGAA+AGG - chr1_4:41568999-41569018 None:intergenic 20.0%
!! TTCATCTTAAATGATAAGAA+TGG + chr1_4:41568999-41569018 Msa0163410:intron 20.0%
!! TAAATGATAAGAATGGATAA+AGG + chr1_4:41569006-41569025 Msa0163410:intron 20.0%
!! AAATGATAAGAATGGATAAA+GGG + chr1_4:41569007-41569026 Msa0163410:intron 20.0%
!!! TTGTGACAATTTAAATTTTG+GGG + chr1_4:41569050-41569069 Msa0163410:intron 20.0%
!!! ACACTTATCTTTTAATCATT+TGG - chr1_4:41569145-41569164 None:intergenic 20.0%
!! ATTAGTAGTACATAAAGTAT+AGG + chr1_4:41569196-41569215 Msa0163410:intron 20.0%
!!! ATGTTAGTGATTAATTTGTT+AGG + chr1_4:41569303-41569322 Msa0163410:intron 20.0%
!! ATTTCTTTCTTTCTGATAAA+CGG - chr1_4:41569994-41570013 None:intergenic 20.0%
!!! AAATTTGTAATTTTATGGAC+AGG + chr1_4:41570302-41570321 Msa0163410:intron 20.0%
!! AATTAAACAGTTGCATATAT+CGG - chr1_4:41570484-41570503 None:intergenic 20.0%
!!! ATTAATACTAAATTTTGAGG+TGG - chr1_4:41570709-41570728 None:intergenic 20.0%
!! AATTATATTCAGTGTCAATA+TGG - chr1_4:41570816-41570835 None:intergenic 20.0%
! TAGAATCATTGTATTGTGAA+TGG - chr1_4:41567297-41567316 None:intergenic 25.0%
!!! TGGTTTTACTACCTTTAAAA+GGG - chr1_4:41567418-41567437 None:intergenic 25.0%
!!! TTGGTTTTACTACCTTTAAA+AGG - chr1_4:41567419-41567438 None:intergenic 25.0%
! CTTAGAAAAAGAAAATTGGT+TGG - chr1_4:41567438-41567457 None:intergenic 25.0%
! CAAAATTTAAACTTTGCAAC+TGG + chr1_4:41567557-41567576 Msa0163410:intron 25.0%
! CAACAAAATCTTTCTTCTTA+TGG + chr1_4:41567702-41567721 Msa0163410:CDS 25.0%
! TGACACTATTTAATGAACTA+TGG - chr1_4:41567755-41567774 None:intergenic 25.0%
!! GTTTTCATGTAACTTATAAG+CGG + chr1_4:41567906-41567925 Msa0163410:intron 25.0%
!! TTGTTTGGATTGACTTATTT+CGG - chr1_4:41568062-41568081 None:intergenic 25.0%
! AGTACTTAAAGATATTGGTA+TGG - chr1_4:41568332-41568351 None:intergenic 25.0%
! TCTTCAGTACTTAAAGATAT+TGG - chr1_4:41568337-41568356 None:intergenic 25.0%
! TTTGATAGATGAGAAACAAA+AGG - chr1_4:41568487-41568506 None:intergenic 25.0%
! TAAGACAATAAAATTACCGT+CGG - chr1_4:41568666-41568685 None:intergenic 25.0%
! ATACTTAATAAGGGTAACAA+AGG - chr1_4:41568785-41568804 None:intergenic 25.0%
! CACTATGTTAAGTTTAAATC+TGG + chr1_4:41568805-41568824 Msa0163410:intron 25.0%
!! ATCTTTTAATCATTTGGTCT+TGG - chr1_4:41569139-41569158 None:intergenic 25.0%
! GTAAATAAATGTGAGTGAAT+AGG - chr1_4:41569729-41569748 None:intergenic 25.0%
!! TTTGAAATGAATGTAGATCA+TGG - chr1_4:41569830-41569849 None:intergenic 25.0%
!! CAATTCTAGAAAGAATAGAA+AGG - chr1_4:41570271-41570290 None:intergenic 25.0%
! TTTGAACATTAATCCGATTT+CGG + chr1_4:41570364-41570383 Msa0163410:CDS 25.0%
! CATGTAAAGAATTAGTCAAA+TGG - chr1_4:41570633-41570652 None:intergenic 25.0%
TGAATGGAATTAGCTATGAA+TGG - chr1_4:41567281-41567300 None:intergenic 30.0%
!! AGAGAAAGTATTCATTGGTT+TGG - chr1_4:41567339-41567358 None:intergenic 30.0%
TTTAAAAGGGGCAAAGAAAA+TGG - chr1_4:41567405-41567424 None:intergenic 30.0%
! ATTTTCTTTGCCCCTTTTAA+AGG + chr1_4:41567404-41567423 Msa0163410:CDS 30.0%
!! GGTTTTACTACCTTTAAAAG+GGG - chr1_4:41567417-41567436 None:intergenic 30.0%
! TAACTTTGGTGTGATTTCAT+TGG - chr1_4:41567501-41567520 None:intergenic 30.0%
! AGCAACTTTTGCATTATTGA+AGG + chr1_4:41567610-41567629 Msa0163410:intron 30.0%
! GCAACTTTTGCATTATTGAA+GGG + chr1_4:41567611-41567630 Msa0163410:intron 30.0%
AATCTTTCTTCTTATGGAAG+AGG + chr1_4:41567708-41567727 Msa0163410:CDS 30.0%
!! CTTATTTTCATAAGTACTCC+AGG - chr1_4:41567946-41567965 None:intergenic 30.0%
TGACTAATGAGAAATGAGTA+TGG + chr1_4:41568125-41568144 Msa0163410:intron 30.0%
CCAATAGCTTAATCAAAACA+AGG - chr1_4:41568290-41568309 None:intergenic 30.0%
!!! CCTTGTTTTGATTAAGCTAT+TGG + chr1_4:41568287-41568306 Msa0163410:intron 30.0%
! TTAACTAATTCCGTGCTTTT+CGG + chr1_4:41568549-41568568 Msa0163410:intron 30.0%
TCTGCAATAATTGTATTTGG+CGG + chr1_4:41568630-41568649 Msa0163410:CDS 30.0%
AACAGACACTCAAGTAATTT+AGG - chr1_4:41568718-41568737 None:intergenic 30.0%
TGTTAAGTTTAAATCTGGCT+TGG + chr1_4:41568810-41568829 Msa0163410:intron 30.0%
!!! TTTAAATCTGGCTTGGATTT+TGG + chr1_4:41568817-41568836 Msa0163410:intron 30.0%
TAAAGTGAGAATTAAACCCA+AGG - chr1_4:41568858-41568877 None:intergenic 30.0%
! GATAAAAGTATGAGTGAACA+TGG - chr1_4:41568881-41568900 None:intergenic 30.0%
!! TTAATCATTTGGTCTTGGAA+AGG - chr1_4:41569134-41569153 None:intergenic 30.0%
TAGGAACTTTGTAAAATGAG+AGG + chr1_4:41569215-41569234 Msa0163410:intron 30.0%
AGGAACTTTGTAAAATGAGA+GGG + chr1_4:41569216-41569235 Msa0163410:intron 30.0%
!! AAAGAATTTGTTAGCACAGT+AGG + chr1_4:41569331-41569350 Msa0163410:intron 30.0%
!! AAGAATTTGTTAGCACAGTA+GGG + chr1_4:41569332-41569351 Msa0163410:intron 30.0%
!! ACTCTAAAGGAGTATTAAGA+AGG - chr1_4:41569375-41569394 None:intergenic 30.0%
! AGAAATCTTAAGAGTGTGTT+TGG + chr1_4:41569474-41569493 Msa0163410:intron 30.0%
GAGGAAATGTAATGTTATGA+GGG - chr1_4:41569566-41569585 None:intergenic 30.0%
TGAGGAAATGTAATGTTATG+AGG - chr1_4:41569567-41569586 None:intergenic 30.0%
TACGAGACCACTTAAATTAA+AGG - chr1_4:41569751-41569770 None:intergenic 30.0%
!! TTCAGTACTGATGTTAATTG+AGG + chr1_4:41570134-41570153 Msa0163410:CDS 30.0%
! AATTTTATGGACAGGTTACT+TGG + chr1_4:41570310-41570329 Msa0163410:intron 30.0%
! CTATTGTCTGTTGTGTTGTT+CGG + chr1_4:41567235-41567254 Msa0163410:five_prime_UTR 35.0%
ATGGAATTAGCTATGAATGG+TGG - chr1_4:41567278-41567297 None:intergenic 35.0%
!! GAAGGAGAGAAAGTATTCAT+TGG - chr1_4:41567344-41567363 None:intergenic 35.0%
!! TTTTTGGTATGTGAAGGGAA+AGG - chr1_4:41567380-41567399 None:intergenic 35.0%
!!! TGGAGTTTTTGGTATGTGAA+GGG - chr1_4:41567385-41567404 None:intergenic 35.0%
!!! ATGGAGTTTTTGGTATGTGA+AGG - chr1_4:41567386-41567405 None:intergenic 35.0%
! GGCAAAGAAAATGGAGTTTT+TGG - chr1_4:41567396-41567415 None:intergenic 35.0%
! TAAGATATAAGCGGCTTGTT+TGG - chr1_4:41568077-41568096 None:intergenic 35.0%
TAATGAGAAATGAGTATGGC+AGG + chr1_4:41568129-41568148 Msa0163410:intron 35.0%
! ACAAAGAGCTTTTAGTGAAG+AGG + chr1_4:41568189-41568208 Msa0163410:CDS 35.0%
! CAAAGAGCTTTTAGTGAAGA+GGG + chr1_4:41568190-41568209 Msa0163410:CDS 35.0%
!! GGAATAGATGATGGAATTTC+CGG - chr1_4:41568238-41568257 None:intergenic 35.0%
GGAAGAAAAGGAATAGATGA+TGG - chr1_4:41568247-41568266 None:intergenic 35.0%
! TATTCCTTTTCTTCCTCATG+TGG + chr1_4:41568252-41568271 Msa0163410:CDS 35.0%
!!! GTTTTAAAACTCACCACATG+AGG - chr1_4:41568268-41568287 None:intergenic 35.0%
!! GTATTCGAAATGAGAGCATT+TGG + chr1_4:41568515-41568534 Msa0163410:intron 35.0%
! TAGAGCTTCTTCAAAGTGTT+GGG - chr1_4:41568588-41568607 None:intergenic 35.0%
ATAGAGCTTCTTCAAAGTGT+TGG - chr1_4:41568589-41568608 None:intergenic 35.0%
TTGAAGAAGCTCTATCTAAC+AGG + chr1_4:41568594-41568613 Msa0163410:CDS 35.0%
CTGCAATAATTGTATTTGGC+GGG + chr1_4:41568631-41568650 Msa0163410:CDS 35.0%
GCATTTCACTATTGATCCTT+GGG + chr1_4:41568839-41568858 Msa0163410:intron 35.0%
AATCAGCAGCAAACTATAGT+AGG - chr1_4:41568914-41568933 None:intergenic 35.0%
AACTTTGTAAAATGAGAGGG+TGG + chr1_4:41569219-41569238 Msa0163410:intron 35.0%
!! AGAATTTGTTAGCACAGTAG+GGG + chr1_4:41569333-41569352 Msa0163410:intron 35.0%
!! CTAAAGGAGTATTAAGAAGG+AGG - chr1_4:41569372-41569391 None:intergenic 35.0%
TGTGTTTGGATGAGGTAATT+TGG + chr1_4:41569488-41569507 Msa0163410:intron 35.0%
GAGGGAATTCAAATACTTAG+AGG - chr1_4:41569548-41569567 None:intergenic 35.0%
GGGAATGTAATGTAATGTTG+AGG - chr1_4:41569585-41569604 None:intergenic 35.0%
GAATTCCATTGTTTGGATGA+GGG - chr1_4:41569605-41569624 None:intergenic 35.0%
TGAATTCCATTGTTTGGATG+AGG - chr1_4:41569606-41569625 None:intergenic 35.0%
TTGAGGTGAATTCCATTGTT+TGG - chr1_4:41569612-41569631 None:intergenic 35.0%
GAGGGAATTCAAATACTTTG+AGG - chr1_4:41569629-41569648 None:intergenic 35.0%
GAGGGAATGTAATGTTATGA+GGG - chr1_4:41569647-41569666 None:intergenic 35.0%
TGAGGGAATGTAATGTTATG+AGG - chr1_4:41569648-41569667 None:intergenic 35.0%
!!! ATCCTTATTTTAATGGCAGC+TGG + chr1_4:41569856-41569875 Msa0163410:intron 35.0%
ATAGCATACCTTAGTTGCAA+AGG - chr1_4:41569941-41569960 None:intergenic 35.0%
! ATGCCTGATCACAATTTGTT+TGG + chr1_4:41570047-41570066 Msa0163410:intron 35.0%
GAACCAAACAAATTGTGATC+AGG - chr1_4:41570053-41570072 None:intergenic 35.0%
TTGAGCAACAAGAGAAAACA+AGG + chr1_4:41570166-41570185 Msa0163410:CDS 35.0%
TTTCTACACTGAAGTTGAAC+TGG + chr1_4:41570216-41570235 Msa0163410:intron 35.0%
GCATATATCGGCAACAATTA+GGG - chr1_4:41570472-41570491 None:intergenic 35.0%
TGCATATATCGGCAACAATT+AGG - chr1_4:41570473-41570492 None:intergenic 35.0%
AGTCAAATGGATCAATTCTC+AGG - chr1_4:41570620-41570639 None:intergenic 35.0%
TTCAGTGTCAATATGGAACT+AGG - chr1_4:41570809-41570828 None:intergenic 35.0%
ACAACAGACAATAGCAGCTA+AGG - chr1_4:41567229-41567248 None:intergenic 40.0%
! AGCTATGAATGGTGGAAAGT+GGG - chr1_4:41567270-41567289 None:intergenic 40.0%
! TAGCTATGAATGGTGGAAAG+TGG - chr1_4:41567271-41567290 None:intergenic 40.0%
AAAGGTAGAATTGTGGAGGA+AGG - chr1_4:41567362-41567381 None:intergenic 40.0%
TGAAGGGAAAGGTAGAATTG+TGG - chr1_4:41567369-41567388 None:intergenic 40.0%
! TCAGGATTTTGTTCAGATGC+AGG + chr1_4:41567645-41567664 Msa0163410:CDS 40.0%
AGAAATGAGTATGGCAGGTT+AGG + chr1_4:41568134-41568153 Msa0163410:intron 40.0%
CTACTTCAATCCGAAAAGCA+CGG - chr1_4:41568562-41568581 None:intergenic 40.0%
GGCATTTCACTATTGATCCT+TGG + chr1_4:41568838-41568857 Msa0163410:intron 40.0%
! TGGGGTGCAAGTTTAGTTTA+AGG + chr1_4:41569068-41569087 Msa0163410:intron 40.0%
!! ATCATTTGGTCTTGGAAAGG+AGG - chr1_4:41569131-41569150 None:intergenic 40.0%
TTTCATAAATCAGACCCCGA+AGG - chr1_4:41569422-41569441 None:intergenic 40.0%
! CTTAAGAGTGTGTTTGGATG+AGG + chr1_4:41569480-41569499 Msa0163410:intron 40.0%
ACATTCCCTCATCCAAACAA+TGG + chr1_4:41569597-41569616 Msa0163410:intron 40.0%
CTCCAGCTGCCATTAAAATA+AGG - chr1_4:41569861-41569880 None:intergenic 40.0%
TATAGGTGGTACGTCATATG+AGG + chr1_4:41569892-41569911 Msa0163410:CDS 40.0%
TGCATTTGCCTTTGCAACTA+AGG + chr1_4:41569930-41569949 Msa0163410:CDS 40.0%
GTAGAAACATACCAGTTCCA+AGG - chr1_4:41570203-41570222 None:intergenic 40.0%
GTTCAAACATACACCACTTG+TGG - chr1_4:41570351-41570370 None:intergenic 40.0%
ATTAATCCGATTTCGGCATC+TGG + chr1_4:41570371-41570390 Msa0163410:CDS 40.0%
! AGACTTGCATTTTGTTGCTC+TGG + chr1_4:41570666-41570685 Msa0163410:three_prime_UTR 40.0%
ATGGAACTAGGACAGAATTC+TGG - chr1_4:41570797-41570816 None:intergenic 40.0%
AGGGAAAGGTAGAATTGTGG+AGG - chr1_4:41567366-41567385 None:intergenic 45.0%
CATTATTGAAGGGCCAGAGA+CGG + chr1_4:41567621-41567640 Msa0163410:CDS 45.0%
ACAAAATCCTGAACCGTCTC+TGG - chr1_4:41567637-41567656 None:intergenic 45.0%
! TTTTGTTCAGATGCAGGTGC+AGG + chr1_4:41567651-41567670 Msa0163410:CDS 45.0%
! AGCTTTTAGTGAAGAGGGAG+AGG + chr1_4:41568195-41568214 Msa0163410:CDS 45.0%
GGAAGATGCAAATGAGATGC+CGG + chr1_4:41568216-41568235 Msa0163410:CDS 45.0%
CTCACCACATGAGGAAGAAA+AGG - chr1_4:41568259-41568278 None:intergenic 45.0%
AGTATTAAGAAGGAGGACCC+AGG - chr1_4:41569365-41569384 None:intergenic 45.0%
!! TGGATGGGGGAATGTTTTGA+GGG - chr1_4:41569665-41569684 None:intergenic 45.0%
! TTGGATGGGGGAATGTTTTG+AGG - chr1_4:41569666-41569685 None:intergenic 45.0%
CTTAGAGTGTGTTTGGATGG+GGG - chr1_4:41569678-41569697 None:intergenic 45.0%
CCTTAGAGTGTGTTTGGATG+GGG - chr1_4:41569679-41569698 None:intergenic 45.0%
CCCTTAGAGTGTGTTTGGAT+GGG - chr1_4:41569680-41569699 None:intergenic 45.0%
CCCATCCAAACACACTCTAA+GGG + chr1_4:41569677-41569696 Msa0163410:intron 45.0%
ACCCTTAGAGTGTGTTTGGA+TGG - chr1_4:41569681-41569700 None:intergenic 45.0%
CTTCACCCTTAGAGTGTGTT+TGG - chr1_4:41569685-41569704 None:intergenic 45.0%
CTGGAGCTGAAATTGGGTAT+AGG + chr1_4:41569875-41569894 Msa0163410:CDS 45.0%
GAGCTGAAATTGGGTATAGG+TGG + chr1_4:41569878-41569897 Msa0163410:CDS 45.0%
CACAATTGGGTCAACTTGAC+TGG - chr1_4:41570082-41570101 None:intergenic 45.0%
!! CAGTCAAGTTGACCCAATTG+TGG + chr1_4:41570080-41570099 Msa0163410:intron 45.0%
CCGAAAAGGATGCCACAATT+GGG - chr1_4:41570095-41570114 None:intergenic 45.0%
! CCCAATTGTGGCATCCTTTT+CGG + chr1_4:41570092-41570111 Msa0163410:CDS 45.0%
! CCAATTGTGGCATCCTTTTC+GGG + chr1_4:41570093-41570112 Msa0163410:CDS 45.0%
! ACAAGGTGCAAGTATTGCCT+TGG + chr1_4:41570183-41570202 Msa0163410:CDS 45.0%
! TGCAAGTATTGCCTTGGAAC+TGG + chr1_4:41570189-41570208 Msa0163410:CDS 45.0%
! GAAGTACCAGATGCCGAAAT+CGG - chr1_4:41570380-41570399 None:intergenic 45.0%
TTTGGACACCTTGTCGTTGT+AGG - chr1_4:41570422-41570441 None:intergenic 45.0%
! ACAAGGTGTCCAAATTGCTC+TGG + chr1_4:41570428-41570447 Msa0163410:CDS 45.0%
TTTCCAGCACCAGAGCAATT+TGG - chr1_4:41570440-41570459 None:intergenic 45.0%
! AAATTGCTCTGGTGCTGGAA+AGG + chr1_4:41570439-41570458 Msa0163410:CDS 45.0%
AACTAGGACAGAATTCTGGC+AGG - chr1_4:41570793-41570812 None:intergenic 45.0%
!!! AAAACTTTTTATTTTTTTAT+AGG + chr1_4:41569277-41569296 Msa0163410:intron 5.0%
!!! TTATAAAATTTGTAATTTTA+TGG + chr1_4:41570297-41570316 Msa0163410:intron 5.0%
AATTGCGTGCTCTTCTCCAC+AGG + chr1_4:41567466-41567485 Msa0163410:CDS 50.0%
! GCGGTTTTCGTAAGCTATCC+TGG + chr1_4:41567925-41567944 Msa0163410:intron 50.0%
CACAGTAGGGGTCAAAACCT+GGG + chr1_4:41569345-41569364 Msa0163410:intron 50.0%
!! GGTATCGGTTGGGACTCTAA+AGG - chr1_4:41569388-41569407 None:intergenic 50.0%
CCCCATCCAAACACACTCTA+AGG + chr1_4:41569676-41569695 Msa0163410:intron 50.0%
ATGGCAGCTGGAGCTGAAAT+TGG + chr1_4:41569868-41569887 Msa0163410:intron 50.0%
TGGCAGCTGGAGCTGAAATT+GGG + chr1_4:41569869-41569888 Msa0163410:intron 50.0%
CCCGAAAAGGATGCCACAAT+TGG - chr1_4:41570096-41570115 None:intergenic 50.0%
!! ATTGTGGCATCCTTTTCGGG+TGG + chr1_4:41570096-41570115 Msa0163410:CDS 50.0%
TACTTCTGTTAGACCCCTGC+AGG + chr1_4:41570394-41570413 Msa0163410:CDS 50.0%
TGTCGTTGTAGGAACCTGCA+GGG - chr1_4:41570411-41570430 None:intergenic 50.0%
TTGTCGTTGTAGGAACCTGC+AGG - chr1_4:41570412-41570431 None:intergenic 50.0%
TGCAGGTTCCTACAACGACA+AGG + chr1_4:41570411-41570430 Msa0163410:CDS 50.0%
TGTCCAAATTGCTCTGGTGC+TGG + chr1_4:41570434-41570453 Msa0163410:CDS 50.0%
CCATCTTCATCCCAGTGCAA+AGG - chr1_4:41570584-41570603 None:intergenic 50.0%
CCTTTGCACTGGGATGAAGA+TGG + chr1_4:41570581-41570600 Msa0163410:CDS 50.0%
TGCTCTTCTCCACAGGATGC+AGG + chr1_4:41567473-41567492 Msa0163410:CDS 55.0%
TCATTGGAGCCTGCATCCTG+TGG - chr1_4:41567485-41567504 None:intergenic 55.0%
GCACAGTAGGGGTCAAAACC+TGG + chr1_4:41569344-41569363 Msa0163410:intron 55.0%
AAGGTGTACCCCAGCGGTAT+CGG - chr1_4:41569403-41569422 None:intergenic 55.0%
ATACCGCTGGGGTACACCTT+CGG + chr1_4:41569403-41569422 Msa0163410:intron 55.0%
!!! TCCTTTTCGGGTGGAGCAGT+TGG + chr1_4:41570105-41570124 Msa0163410:CDS 55.0%
!! CAGGTTACTTGGCTTGCGCT+CGG + chr1_4:41570321-41570340 Msa0163410:intron 55.0%
GTCGTTGTAGGAACCTGCAG+GGG - chr1_4:41570410-41570429 None:intergenic 55.0%
TGTCCAACCTGCCTTTGCAC+TGG + chr1_4:41570570-41570589 Msa0163410:CDS 55.0%
GTCCAACCTGCCTTTGCACT+GGG + chr1_4:41570571-41570590 Msa0163410:CDS 55.0%
ATCCCAGTGCAAAGGCAGGT+TGG - chr1_4:41570576-41570595 None:intergenic 55.0%
CTTCATCCCAGTGCAAAGGC+AGG - chr1_4:41570580-41570599 None:intergenic 55.0%
TGAAGGGCCAGAGACGGTTC+AGG + chr1_4:41567627-41567646 Msa0163410:CDS 60.0%
GGAGATTGCGTGTGCAGCAG+CGG + chr1_4:41568155-41568174 Msa0163410:CDS 60.0%
!! TGGCGGGCTTATTGCACCGA+CGG + chr1_4:41568647-41568666 Msa0163410:CDS 60.0%
AGAGTCCCAACCGATACCGC+TGG + chr1_4:41569390-41569409 Msa0163410:intron 60.0%
GAGTCCCAACCGATACCGCT+GGG + chr1_4:41569391-41569410 Msa0163410:intron 60.0%
AGTCCCAACCGATACCGCTG+GGG + chr1_4:41569392-41569411 Msa0163410:intron 60.0%
!! GTACCCCAGCGGTATCGGTT+GGG - chr1_4:41569398-41569417 None:intergenic 60.0%
!! TGTACCCCAGCGGTATCGGT+TGG - chr1_4:41569399-41569418 None:intergenic 60.0%
TACCGCTGGGGTACACCTTC+GGG + chr1_4:41569404-41569423 Msa0163410:intron 60.0%
GCCAACTGCTCCACCCGAAA+AGG - chr1_4:41570109-41570128 None:intergenic 60.0%
!! TGCGCTCGGTGTTCCACAAG+TGG + chr1_4:41570335-41570354 Msa0163410:CDS 60.0%
ACCGCTGGGGTACACCTTCG+GGG + chr1_4:41569405-41569424 Msa0163410:intron 65.0%
! ACCCCGAAGGTGTACCCCAG+CGG - chr1_4:41569409-41569428 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 41567158 41570865 41567158 ID=Msa0163410;Name=Msa0163410
chr1_4 mRNA 41567158 41570865 41567158 ID=Msa0163410-mRNA-1;Parent=Msa0163410;Name=Msa0163410-mRNA-1;_AED=0.10;_eAED=0.10;_QI=186|1|1|1|1|1|8|224|306
chr1_4 exon 41567158 41567516 41567158 ID=Msa0163410-mRNA-1:exon:11948;Parent=Msa0163410-mRNA-1
chr1_4 exon 41567612 41567729 41567612 ID=Msa0163410-mRNA-1:exon:11949;Parent=Msa0163410-mRNA-1
chr1_4 exon 41568151 41568273 41568151 ID=Msa0163410-mRNA-1:exon:11950;Parent=Msa0163410-mRNA-1
chr1_4 exon 41568582 41568668 41568582 ID=Msa0163410-mRNA-1:exon:11951;Parent=Msa0163410-mRNA-1
chr1_4 exon 41569875 41569951 41569875 ID=Msa0163410-mRNA-1:exon:11952;Parent=Msa0163410-mRNA-1
chr1_4 exon 41570083 41570210 41570083 ID=Msa0163410-mRNA-1:exon:11953;Parent=Msa0163410-mRNA-1
chr1_4 exon 41570324 41570460 41570324 ID=Msa0163410-mRNA-1:exon:11954;Parent=Msa0163410-mRNA-1
chr1_4 exon 41570564 41570865 41570564 ID=Msa0163410-mRNA-1:exon:11955;Parent=Msa0163410-mRNA-1
chr1_4 five_prime_UTR 41567158 41567343 41567158 ID=Msa0163410-mRNA-1:five_prime_utr;Parent=Msa0163410-mRNA-1
chr1_4 CDS 41567344 41567516 41567344 ID=Msa0163410-mRNA-1:cds;Parent=Msa0163410-mRNA-1
chr1_4 CDS 41567612 41567729 41567612 ID=Msa0163410-mRNA-1:cds;Parent=Msa0163410-mRNA-1
chr1_4 CDS 41568151 41568273 41568151 ID=Msa0163410-mRNA-1:cds;Parent=Msa0163410-mRNA-1
chr1_4 CDS 41568582 41568668 41568582 ID=Msa0163410-mRNA-1:cds;Parent=Msa0163410-mRNA-1
chr1_4 CDS 41569875 41569951 41569875 ID=Msa0163410-mRNA-1:cds;Parent=Msa0163410-mRNA-1
chr1_4 CDS 41570083 41570210 41570083 ID=Msa0163410-mRNA-1:cds;Parent=Msa0163410-mRNA-1
chr1_4 CDS 41570324 41570460 41570324 ID=Msa0163410-mRNA-1:cds;Parent=Msa0163410-mRNA-1
chr1_4 CDS 41570564 41570641 41570564 ID=Msa0163410-mRNA-1:cds;Parent=Msa0163410-mRNA-1
chr1_4 three_prime_UTR 41570642 41570865 41570642 ID=Msa0163410-mRNA-1:three_prime_utr;Parent=Msa0163410-mRNA-1
Gene Sequence

>Msa0163410

ATGAATACTTTCTCTCCTTCCTCCACAATTCTACCTTTCCCTTCACATACCAAAAACTCCATTTTCTTTGCCCCTTTTAAAGGTAGTAAAACCAACCAATTTTCTTTTTCTAAGTTAAGGATAATTGCGTGCTCTTCTCCACAGGATGCAGGCTCCAATGAAATCACACCAAACAACTTTTGCATTATTGAAGGGCCAGAGACGGTTCAGGATTTTGTTCAGATGCAGGTGCAGGAAATTCAAGATAATATAAAGAGTAGACGCAACAAAATCTTTCTTCTTATGGAAGAGGTTAGGAGATTGCGTGTGCAGCAGCGGCTAAGAAGTATACAAAGAGCTTTTAGTGAAGAGGGAGAGGAAGATGCAAATGAGATGCCGGAAATTCCATCATCTATTCCTTTTCTTCCTCATGTGACACCCAACACTTTGAAGAAGCTCTATCTAACAGGCGCATCATTCATATCTGCAATAATTGTATTTGGCGGGCTTATTGCACCGACGCTGGAGCTGAAATTGGGTATAGGTGGTACGTCATATGAGGATTTCATAAGAAGCTTGCATTTGCCTTTGCAACTAAGTCAAGTTGACCCAATTGTGGCATCCTTTTCGGGTGGAGCAGTTGGCGTGATTTCAGTACTGATGTTAATTGAGGCTAATAATGTTGAGCAACAAGAGAAAACAAGGTGCAAGTATTGCCTTGGAACTGGTTACTTGGCTTGCGCTCGGTGTTCCACAAGTGGTGTATGTTTGAACATTAATCCGATTTCGGCATCTGGTACTTCTGTTAGACCCCTGCAGGTTCCTACAACGACAAGGTGTCCAAATTGCTCTGGTGCTGGAAAGGTTATGTGTCCAACCTGCCTTTGCACTGGGATGAAGATGGCAAGTGAACATGACCTGAGAATTGATCCATTTGACTAA

Protein sequence

>Msa0163410

MNTFSPSSTILPFPSHTKNSIFFAPFKGSKTNQFSFSKLRIIACSSPQDAGSNEITPNNFCIIEGPETVQDFVQMQVQEIQDNIKSRRNKIFLLMEEVRRLRVQQRLRSIQRAFSEEGEEDANEMPEIPSSIPFLPHVTPNTLKKLYLTGASFISAIIVFGGLIAPTLELKLGIGGTSYEDFIRSLHLPLQLSQVDPIVASFSGGAVGVISVLMLIEANNVEQQEKTRCKYCLGTGYLACARCSTSGVCLNINPISASGTSVRPLQVPTTTRCPNCSGAGKVMCPTCLCTGMKMASEHDLRIDPFD*