AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0851870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0851870 MtrunA17_Chr5g0428201 98.708 542 6 1 1 541 1 542 0.0 1099
Msa0851870 MtrunA17_Chr3g0141051 80.483 538 95 3 1 538 1 528 0.0 890
Msa0851870 MtrunA17_Chr4g0049411 66.865 504 162 4 36 538 27 526 0.0 657
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0851870 AT1G58290.1 76.234 547 116 7 1 539 1 541 0.0 790
Msa0851870 AT1G09940.1 72.110 545 131 7 1 539 1 530 0.0 774
Msa0851870 AT2G31250.1 64.731 465 150 6 79 539 70 524 0.0 584

Find 125 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAATATCCTTACCCTTAA+AGG 0.099622 5_4:-42465522 Msa0851870:three_prime_UTR
GATTCTTTCTCAAGCCTTTA+AGG 0.101786 5_4:+42465508 None:intergenic
TGAGAAATGTTTAGGTAAAA+TGG 0.148078 5_4:-42465834 Msa0851870:CDS
AAGAAGAAGAACAGCATTTA+AGG 0.152889 5_4:+42468185 None:intergenic
TTCCAACCATTAAGAAATTA+AGG 0.165771 5_4:-42465889 Msa0851870:CDS
CGCTTCATCTTCTGATGTTT+TGG 0.184621 5_4:-42468071 Msa0851870:CDS
ACGCAATCACCGTCGGTAAA+AGG 0.192964 5_4:-42466507 Msa0851870:CDS
ATAAGCCCTTAATTTCTTAA+TGG 0.214661 5_4:+42465883 None:intergenic
TGAAACTGAGGTTTCTGTTT+TGG 0.219895 5_4:-42465642 Msa0851870:CDS
TTCAATCGGAATTAGTAAAT+TGG 0.222150 5_4:-42465323 Msa0851870:three_prime_UTR
GGGCTTATGCTGAAAGATTA+AGG 0.231515 5_4:-42465868 Msa0851870:CDS
TAGTTTCTATGGTGCTAAAT+TGG 0.244077 5_4:-42468218 Msa0851870:CDS
AGGAGCAGCATTGTCGTTAT+TGG 0.244642 5_4:-42467388 Msa0851870:CDS
TTAGGCTCTATTTATGAGTT+TGG 0.261273 5_4:+42465360 None:intergenic
TGAAAGAGGCACACACATTT+AGG 0.297746 5_4:+42465342 None:intergenic
GCTGTTTCAACTAGTTTCTA+TGG 0.301919 5_4:-42468229 Msa0851870:CDS
GCTGAACTTGAGAAATGTTT+AGG 0.304091 5_4:-42465842 Msa0851870:CDS
GCTCTAGGCCATTCTGCTTC+TGG 0.309364 5_4:+42467316 None:intergenic
AGTTATTGGAGCTGGCAAAA+TGG 0.324891 5_4:-42466371 Msa0851870:CDS
TCCTTTAGCAAGCGAAGAAA+TGG 0.328100 5_4:-42466125 Msa0851870:CDS
ATATATCTCCATTCGGTTGC+AGG 0.334402 5_4:+42467240 None:intergenic
GTTATTGGAGCTGGCAAAAT+GGG 0.335933 5_4:-42466370 Msa0851870:CDS
AAAGCAGGACAAGGAGTTAA+TGG 0.352248 5_4:-42466562 Msa0851870:CDS
TCCAACCATTAAGAAATTAA+GGG 0.367076 5_4:-42465888 Msa0851870:CDS
GGAGCAGCATTGTCGTTATT+GGG 0.368509 5_4:-42467387 Msa0851870:CDS
ATTCTTTCTCAAGCCTTTAA+GGG 0.368639 5_4:+42465509 None:intergenic
GATAATTTACAAACCCCTTT+CGG 0.370528 5_4:-42466239 Msa0851870:CDS
GAGAAATGTTTAGGTAAAAT+GGG 0.376514 5_4:-42465833 Msa0851870:CDS
AGTGATCATCGGCGAAGAAT+CGG 0.380975 5_4:-42465948 Msa0851870:CDS
AATGCAAGAATGCTAGTTAT+TGG 0.382486 5_4:-42466385 Msa0851870:CDS
CAACATCATTTATTTCTTCA+CGG 0.384102 5_4:+42466263 None:intergenic
CGATGATCTTGAGTCTGTTA+AGG 0.386630 5_4:-42466047 Msa0851870:CDS
TCTAAGCCTATCCTCTTTGT+TGG 0.386815 5_4:+42465988 None:intergenic
GGTCTTGATTCTCTTGTAAT+GGG 0.391946 5_4:-42466622 Msa0851870:CDS
GACCTGCTGATACTTCAAAA+AGG 0.396196 5_4:+42466641 None:intergenic
GGCTTATGCTGAAAGATTAA+GGG 0.398014 5_4:-42465867 Msa0851870:CDS
GACAATAATATTAGTAAGGT+TGG 0.400439 5_4:+42468272 None:intergenic
GCCCTTAATTTCTTAATGGT+TGG 0.403046 5_4:+42465887 None:intergenic
GGACAAGGAGTTAATGGCTT+TGG 0.405221 5_4:-42466556 Msa0851870:CDS
AGGTCTTGATTCTCTTGTAA+TGG 0.410658 5_4:-42466623 Msa0851870:CDS
TTCTCAAGCCTTTAAGGGTA+AGG 0.416845 5_4:+42465514 None:intergenic
ATCAAACATTTGGTTGCAAA+AGG 0.420709 5_4:-42466337 Msa0851870:CDS
TAAGGTTGGTATTTGTTACT+TGG 0.421595 5_4:+42468286 None:intergenic
GAAGCTTGTGATCAAACATT+TGG 0.426546 5_4:-42466347 Msa0851870:CDS
GTGATCATCGGCGAAGAATC+GGG 0.429361 5_4:-42465947 Msa0851870:CDS
ACACATGAACCTACGTTTCT+CGG 0.431304 5_4:+42466070 None:intergenic
AGTGTAATAATCAATGAAAA+TGG 0.434534 5_4:+42465565 None:intergenic
TCGGAAATGCTCGAATGTAT+TGG 0.438087 5_4:-42466220 Msa0851870:CDS
CCCATTTCTTCGCTTGCTAA+AGG 0.439472 5_4:+42466124 None:intergenic
ACCGGCTGCAATGTTGGTCT+CGG 0.439980 5_4:+42466477 None:intergenic
GTGTATATTGTACAAAATAG+AGG 0.440797 5_4:-42465394 Msa0851870:three_prime_UTR
CGCAATCACCGTCGGTAAAA+GGG 0.440824 5_4:-42466506 Msa0851870:CDS
AGCTGTGGATGATCTTAGTA+AGG 0.441939 5_4:-42465783 Msa0851870:CDS
GCTAAAACTATGTATGTGTT+TGG 0.443288 5_4:+42468310 None:intergenic
CTTAGACAATAATATTAGTA+AGG 0.445803 5_4:+42468268 None:intergenic
AATCGGGACAATTTGAAGCT+TGG 0.456577 5_4:-42465931 Msa0851870:CDS
TTACTAATTCCGATTGAAAG+AGG 0.457239 5_4:+42465328 None:intergenic
AGGCCATTCTGCTTCTGGTA+TGG 0.459415 5_4:+42467321 None:intergenic
GGCTCTATTTATGAGTTTGG+AGG 0.474943 5_4:+42465363 None:intergenic
GGAGCAGAAGATTAGAGCTA+AGG 0.475137 5_4:-42465621 Msa0851870:CDS
CAATGTTGATGATCTTAAAG+AGG 0.478016 5_4:-42466020 Msa0851870:CDS
AATTGGTTCAACACAATTGT+GGG 0.479202 5_4:-42465306 Msa0851870:three_prime_UTR
AACTGCACCGGCTGCAATGT+TGG 0.481393 5_4:+42466471 None:intergenic
CTGCAATGTTGGTCTCGGTT+CGG 0.486737 5_4:+42466482 None:intergenic
ATGTGTGTGCCTCTTTCAAT+CGG 0.487399 5_4:-42465337 Msa0851870:three_prime_UTR
ATTGTGAATAAAATGCTTCA+TGG 0.487727 5_4:-42465758 Msa0851870:CDS
ACATTCGAGCATTTCCGAAA+GGG 0.488912 5_4:+42466225 None:intergenic
CAAAGCTCACCAATGGCTCT+AGG 0.509555 5_4:+42467301 None:intergenic
CCTTTAGCAAGCGAAGAAAT+GGG 0.509769 5_4:-42466124 Msa0851870:CDS
CGGTGCAGTTTCTGTTAGCT+CGG 0.512744 5_4:-42466458 Msa0851870:CDS
AAATTGGTTCAACACAATTG+TGG 0.514071 5_4:-42465307 Msa0851870:three_prime_UTR
TAAATGAGTAGTAACATAAG+AGG 0.515917 5_4:+42468150 None:intergenic
GCAGAATGGCCTAGAGCCAT+TGG 0.516082 5_4:-42467310 Msa0851870:CDS
GATTCTCTTGTAATGGGAGA+AGG 0.520460 5_4:-42466616 Msa0851870:CDS
TACTTTGACAGCTCTGATGC+AGG 0.523941 5_4:+42466700 None:intergenic
CATTCTTGCATTGCCATGTG+AGG 0.524732 5_4:+42466396 None:intergenic
TTGCCATGTGAGGCTTGATC+AGG 0.526089 5_4:+42466406 None:intergenic
TCACATCTCAAATGTTGCAT+TGG 0.531540 5_4:+42465734 None:intergenic
GTAGTTGTTAATCGAACTGA+AGG 0.532592 5_4:-42466301 Msa0851870:CDS
CGACAACATATATCTCCATT+CGG 0.533183 5_4:+42467233 None:intergenic
CAACTTGTTTGACTTGTGCA+AGG 0.546113 5_4:+42466587 None:intergenic
CATTCGAGCATTTCCGAAAG+GGG 0.550182 5_4:+42466226 None:intergenic
GCAGAAGATTAGAGCTAAGG+TGG 0.550559 5_4:-42465618 Msa0851870:CDS
GTCAAACAAGTTGTGAAAGC+AGG 0.553805 5_4:-42466577 Msa0851870:CDS
ATGCAACATTTGAGATGTGA+TGG 0.556625 5_4:-42465731 Msa0851870:CDS
TCAAACATTTGGTTGCAAAA+GGG 0.561106 5_4:-42466336 Msa0851870:CDS
GGATAGGCTTAGAAAAGCAA+TGG 0.563807 5_4:-42465978 Msa0851870:CDS
TGATGATCTTAAAGAGGTTG+TGG 0.565478 5_4:-42466014 Msa0851870:CDS
AGAATGCTAGTTATTGGAGC+TGG 0.568228 5_4:-42466379 Msa0851870:CDS
TGTACAAAATAGAGGAGTTG+TGG 0.577839 5_4:-42465386 Msa0851870:three_prime_UTR
AATGTTTAGTCTTGAAACTG+AGG 0.579905 5_4:-42465654 Msa0851870:CDS
CAAGTTGTGAAAGCAGGACA+AGG 0.580921 5_4:-42466571 Msa0851870:CDS
ACCGAGACCAACATTGCAGC+CGG 0.581151 5_4:-42466478 Msa0851870:CDS
TTGCCATACCAGAAGCAGAA+TGG 0.581580 5_4:-42467324 Msa0851870:CDS
GCTGTGGATGATCTTAGTAA+GGG 0.582592 5_4:-42465782 Msa0851870:CDS
TACATTCGAGCATTTCCGAA+AGG 0.590437 5_4:+42466224 None:intergenic
GAACAGCATTTAAGGAACAA+AGG 0.591818 5_4:+42468193 None:intergenic
CAACAGGATATACAAAGGAA+AGG 0.593342 5_4:-42467408 Msa0851870:intron
TCTGAGCACCTGCAACCGAA+TGG 0.595913 5_4:-42467248 Msa0851870:CDS
TTGATCAGGTAACTTCATCA+AGG 0.596661 5_4:+42466420 None:intergenic
GTGTCAAAGAAGTCACTGAA+TGG 0.597620 5_4:-42467192 Msa0851870:CDS
TGGCTGCCAACAAAGAGGAT+AGG 0.597993 5_4:-42465994 Msa0851870:CDS
GATGTGATGGGAGTGATAGT+AGG 0.608822 5_4:-42465718 Msa0851870:CDS
TTCAAGCACGCAATCACCGT+CGG 0.609589 5_4:-42466514 Msa0851870:CDS
ATGGAAGCACAAGTGATCAT+CGG 0.609797 5_4:-42465959 Msa0851870:CDS
CAGTGACTTCTTTGACACCA+CGG 0.610814 5_4:+42467197 None:intergenic
GTGTCATATTAATCTTACTG+TGG 0.617221 5_4:+42465587 None:intergenic
CTGTGGATGATCTTAGTAAG+GGG 0.621235 5_4:-42465781 Msa0851870:CDS
TTACCTGATCAAGCCTCACA+TGG 0.622088 5_4:-42466409 Msa0851870:CDS
CAGATTACAAAGCTCACCAA+TGG 0.622987 5_4:+42467294 None:intergenic
TTATTGGAGCTGGCAAAATG+GGG 0.640758 5_4:-42466369 Msa0851870:CDS
ATTTCTGTTCCGAGAAACGT+AGG 0.641352 5_4:-42466079 Msa0851870:CDS
ACAGATTTAGCATTATCACT+AGG 0.641571 5_4:+42468043 None:intergenic
TCTAAGTACACTAATTACAA+TGG 0.646392 5_4:-42468251 Msa0851870:exon
GAACAGAAATATCTACGAAG+AGG 0.658579 5_4:+42466092 None:intergenic
CGAGCTAACAGAAACTGCAC+CGG 0.659200 5_4:+42466459 None:intergenic
GGTTGTGGCTGCCAACAAAG+AGG 0.660035 5_4:-42465999 Msa0851870:CDS
AAATGATGTGGCAAAAGATG+TGG 0.662446 5_4:+42468356 None:intergenic
ACTTTCAACAGGATATACAA+AGG 0.666271 5_4:-42467413 Msa0851870:intron
GGCTTTGGTAGAAACATCAG+TGG 0.667204 5_4:-42466541 Msa0851870:CDS
TGCAACATTTGAGATGTGAT+GGG 0.668284 5_4:-42465730 Msa0851870:CDS
AAATGAATAATGAAATGATG+TGG 0.671437 5_4:+42468344 None:intergenic
GTCGCACTTTCTCAGCACCG+TGG 0.705085 5_4:-42467214 Msa0851870:CDS
TTAGCAAGCGAAGAAATGGG+AGG 0.728387 5_4:-42466121 Msa0851870:CDS
TAGTTGTTAATCGAACTGAA+GGG 0.734798 5_4:-42466300 Msa0851870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTTTGTTAATAATGAA+TGG - chr5_4:42465690-42465709 Msa0851870:CDS 15.0%
!! AATACATGTTTAATTATGTT+TGG - chr5_4:42465801-42465820 Msa0851870:CDS 15.0%
!!! TTTTCAAAATCATTGTTAAT+TGG + chr5_4:42465881-42465900 None:intergenic 15.0%
!! ATACTCTTAATGAATTTATA+TGG + chr5_4:42466064-42466083 None:intergenic 15.0%
!! AAATGAATAATGAAATGATG+TGG + chr5_4:42465314-42465333 None:intergenic 20.0%
!! CTTAGACAATAATATTAGTA+AGG + chr5_4:42465390-42465409 None:intergenic 20.0%
!!! ACTACTCATTTATCATTTTT+TGG - chr5_4:42465516-42465535 Msa0851870:three_prime_UTR 20.0%
!! TAACAAAAAAACATTCAAAG+AGG + chr5_4:42465682-42465701 None:intergenic 20.0%
!! TAATGAATGGTTCAATTATA+TGG - chr5_4:42465703-42465722 Msa0851870:CDS 20.0%
!! GATGGTTAATGAATATAATA+AGG - chr5_4:42465826-42465845 Msa0851870:CDS 20.0%
!! AATTAAACACATGAAAGTTA+TGG - chr5_4:42465969-42465988 Msa0851870:CDS 20.0%
!! GAATTTATATGGATATAACA+AGG + chr5_4:42466053-42466072 None:intergenic 20.0%
!! TAAATATCTACGTATATGTT+TGG - chr5_4:42466536-42466555 Msa0851870:CDS 20.0%
!! ATAGAAATAGATTATGCATT+AGG - chr5_4:42466670-42466689 Msa0851870:CDS 20.0%
!!! TCTATTGTATTGATACATAT+TGG - chr5_4:42466892-42466911 Msa0851870:intron 20.0%
!!! ACATTTTCTTTCAAAATCAA+AGG + chr5_4:42467501-42467520 None:intergenic 20.0%
!!! GATTTTGAAAGAAAATGTTA+AGG - chr5_4:42467503-42467522 Msa0851870:intron 20.0%
!! AGTGTAATAATCAATGAAAA+TGG + chr5_4:42468093-42468112 None:intergenic 20.0%
! GACAATAATATTAGTAAGGT+TGG + chr5_4:42465386-42465405 None:intergenic 25.0%
! TCTAAGTACACTAATTACAA+TGG - chr5_4:42465404-42465423 Msa0851870:three_prime_UTR 25.0%
! TAAATGAGTAGTAACATAAG+AGG + chr5_4:42465508-42465527 None:intergenic 25.0%
! ATGGTTCAATTATATGGTTA+AGG - chr5_4:42465709-42465728 Msa0851870:CDS 25.0%
! AATTATATGGTTAAGGTTAG+TGG - chr5_4:42465716-42465735 Msa0851870:CDS 25.0%
! GTTTAATTATGTTTGGTAGA+TGG - chr5_4:42465808-42465827 Msa0851870:CDS 25.0%
!! TTATGAAATTGACTTTCAAC+AGG - chr5_4:42466231-42466250 Msa0851870:CDS 25.0%
! AGAAAAAAATGAACCTACAT+TGG + chr5_4:42466493-42466512 None:intergenic 25.0%
! ACTTATAGCTTATACGAAAA+CGG - chr5_4:42466623-42466642 Msa0851870:CDS 25.0%
! AAACAAATTGAGTGTATGTT+TGG + chr5_4:42466852-42466871 None:intergenic 25.0%
!!! TCTATTTTTGCTATACAACA+AGG - chr5_4:42466978-42466997 Msa0851870:intron 25.0%
!! CAACATCATTTATTTCTTCA+CGG + chr5_4:42467395-42467414 None:intergenic 25.0%
! TTCCAACCATTAAGAAATTA+AGG - chr5_4:42467766-42467785 Msa0851870:intron 25.0%
! TCCAACCATTAAGAAATTAA+GGG - chr5_4:42467767-42467786 Msa0851870:intron 25.0%
! ATAAGCCCTTAATTTCTTAA+TGG + chr5_4:42467775-42467794 None:intergenic 25.0%
! TGAGAAATGTTTAGGTAAAA+TGG - chr5_4:42467821-42467840 Msa0851870:intron 25.0%
! GAGAAATGTTTAGGTAAAAT+GGG - chr5_4:42467822-42467841 Msa0851870:intron 25.0%
! ATTGTGAATAAAATGCTTCA+TGG - chr5_4:42467897-42467916 Msa0851870:intron 25.0%
! ATAACCAGAAAAACAAACAA+AGG + chr5_4:42468210-42468229 None:intergenic 25.0%
! GTGTATATTGTACAAAATAG+AGG - chr5_4:42468261-42468280 Msa0851870:five_prime_UTR 25.0%
! TTCAATCGGAATTAGTAAAT+TGG - chr5_4:42468332-42468351 Msa0851870:five_prime_UTR 25.0%
GCTAAAACTATGTATGTGTT+TGG + chr5_4:42465348-42465367 None:intergenic 30.0%
!! TAAGGTTGGTATTTGTTACT+TGG + chr5_4:42465372-42465391 None:intergenic 30.0%
! TAGTTTCTATGGTGCTAAAT+TGG - chr5_4:42465437-42465456 Msa0851870:three_prime_UTR 30.0%
AAGAAGAAGAACAGCATTTA+AGG + chr5_4:42465473-42465492 None:intergenic 30.0%
!! AAAAAGAGCTTTGTTCAAAG+AGG - chr5_4:42465546-42465565 Msa0851870:three_prime_UTR 30.0%
ACAGATTTAGCATTATCACT+AGG + chr5_4:42465615-42465634 None:intergenic 30.0%
! AATCGTTAACCAAGATTTTC+AGG - chr5_4:42465899-42465918 Msa0851870:CDS 30.0%
TACGTTTGATCACAAATTTG+TGG - chr5_4:42465924-42465943 Msa0851870:CDS 30.0%
GATCACAAATTTGTGGTTAA+TGG - chr5_4:42465931-42465950 Msa0851870:CDS 30.0%
ACTTTCAACAGGATATACAA+AGG - chr5_4:42466242-42466261 Msa0851870:CDS 30.0%
AATGCAAGAATGCTAGTTAT+TGG - chr5_4:42467270-42467289 Msa0851870:CDS 30.0%
ATCAAACATTTGGTTGCAAA+AGG - chr5_4:42467318-42467337 Msa0851870:CDS 30.0%
TCAAACATTTGGTTGCAAAA+GGG - chr5_4:42467319-42467338 Msa0851870:CDS 30.0%
TAGTTGTTAATCGAACTGAA+GGG - chr5_4:42467355-42467374 Msa0851870:CDS 30.0%
GATAATTTACAAACCCCTTT+CGG - chr5_4:42467416-42467435 Msa0851870:intron 30.0%
!! CAATGTTGATGATCTTAAAG+AGG - chr5_4:42467635-42467654 Msa0851870:intron 30.0%
!! AATGTTTAGTCTTGAAACTG+AGG - chr5_4:42468001-42468020 Msa0851870:intron 30.0%
GTGTCATATTAATCTTACTG+TGG + chr5_4:42468071-42468090 None:intergenic 30.0%
ATGAATATCCTTACCCTTAA+AGG - chr5_4:42468133-42468152 Msa0851870:CDS 30.0%
ATTCTTTCTCAAGCCTTTAA+GGG + chr5_4:42468149-42468168 None:intergenic 30.0%
TTAGGCTCTATTTATGAGTT+TGG + chr5_4:42468298-42468317 None:intergenic 30.0%
TTACTAATTCCGATTGAAAG+AGG + chr5_4:42468330-42468349 None:intergenic 30.0%
! AAATTGGTTCAACACAATTG+TGG - chr5_4:42468348-42468367 Msa0851870:five_prime_UTR 30.0%
! AATTGGTTCAACACAATTGT+GGG - chr5_4:42468349-42468368 Msa0851870:five_prime_UTR 30.0%
AAATGATGTGGCAAAAGATG+TGG + chr5_4:42465302-42465321 None:intergenic 35.0%
!!! GTATGTGTTTGGTTTTTGTG+TGG + chr5_4:42465337-42465356 None:intergenic 35.0%
! GCTGTTTCAACTAGTTTCTA+TGG - chr5_4:42465426-42465445 Msa0851870:three_prime_UTR 35.0%
GAACAGCATTTAAGGAACAA+AGG + chr5_4:42465465-42465484 None:intergenic 35.0%
AAACGTACACCTGAAAATCT+TGG + chr5_4:42465911-42465930 None:intergenic 35.0%
! ATCGTGATTAGTTATGTTCG+TGG - chr5_4:42466007-42466026 Msa0851870:CDS 35.0%
TCGTCGATGACTAATATCTA+CGG + chr5_4:42466147-42466166 None:intergenic 35.0%
CAACAGGATATACAAAGGAA+AGG - chr5_4:42466247-42466266 Msa0851870:CDS 35.0%
CGACAACATATATCTCCATT+CGG + chr5_4:42466425-42466444 None:intergenic 35.0%
TGCAAGAATTAGTGCATGAT+TGG - chr5_4:42466762-42466781 Msa0851870:intron 35.0%
GACGGTGTATATTTGGATTT+CGG + chr5_4:42466826-42466845 None:intergenic 35.0%
TTGGATTGACGGTGTATATT+TGG + chr5_4:42466833-42466852 None:intergenic 35.0%
TGAGTGTATGTTTGGATTGA+CGG + chr5_4:42466844-42466863 None:intergenic 35.0%
!!! ATTCTTGTTTTGCAGACAAG+TGG - chr5_4:42466928-42466947 Msa0851870:intron 35.0%
AGGTCTTGATTCTCTTGTAA+TGG - chr5_4:42467032-42467051 Msa0851870:intron 35.0%
GGTCTTGATTCTCTTGTAAT+GGG - chr5_4:42467033-42467052 Msa0851870:intron 35.0%
TTGATCAGGTAACTTCATCA+AGG + chr5_4:42467238-42467257 None:intergenic 35.0%
GAAGCTTGTGATCAAACATT+TGG - chr5_4:42467308-42467327 Msa0851870:CDS 35.0%
! TGCAAAAGGGTGTAAAAAGA+TGG - chr5_4:42467332-42467351 Msa0851870:CDS 35.0%
GTAGTTGTTAATCGAACTGA+AGG - chr5_4:42467354-42467373 Msa0851870:CDS 35.0%
GAACAGAAATATCTACGAAG+AGG + chr5_4:42467566-42467585 None:intergenic 35.0%
TGATGATCTTAAAGAGGTTG+TGG - chr5_4:42467641-42467660 Msa0851870:intron 35.0%
GCCCTTAATTTCTTAATGGT+TGG + chr5_4:42467771-42467790 None:intergenic 35.0%
GGCTTATGCTGAAAGATTAA+GGG - chr5_4:42467788-42467807 Msa0851870:intron 35.0%
GCTGAACTTGAGAAATGTTT+AGG - chr5_4:42467813-42467832 Msa0851870:intron 35.0%
TAAGAAGACACAAAAAGCTG+TGG - chr5_4:42467857-42467876 Msa0851870:intron 35.0%
TCACATCTCAAATGTTGCAT+TGG + chr5_4:42467924-42467943 None:intergenic 35.0%
! ATGCAACATTTGAGATGTGA+TGG - chr5_4:42467924-42467943 Msa0851870:intron 35.0%
! TGCAACATTTGAGATGTGAT+GGG - chr5_4:42467925-42467944 Msa0851870:intron 35.0%
! TGAAACTGAGGTTTCTGTTT+TGG - chr5_4:42468013-42468032 Msa0851870:CDS 35.0%
GATTCTTTCTCAAGCCTTTA+AGG + chr5_4:42468150-42468169 None:intergenic 35.0%
!! GTCTCCTTTGTTTGTTTTTC+TGG - chr5_4:42468203-42468222 Msa0851870:CDS 35.0%
TGTACAAAATAGAGGAGTTG+TGG - chr5_4:42468269-42468288 Msa0851870:five_prime_UTR 35.0%
! CGCTTCATCTTCTGATGTTT+TGG - chr5_4:42465584-42465603 Msa0851870:exon 40.0%
CAGATTACAAAGCTCACCAA+TGG + chr5_4:42466364-42466383 None:intergenic 40.0%
ATATATCTCCATTCGGTTGC+AGG + chr5_4:42466418-42466437 None:intergenic 40.0%
GTGTCAAAGAAGTCACTGAA+TGG - chr5_4:42466463-42466482 Msa0851870:CDS 40.0%
ACTGAATGGATGTCCAATGT+AGG - chr5_4:42466477-42466496 Msa0851870:CDS 40.0%
CACTAATTCTTGCACGAACT+CGG + chr5_4:42466756-42466775 None:intergenic 40.0%
TTAGTGCATGATTGGAACCA+CGG - chr5_4:42466770-42466789 Msa0851870:intron 40.0%
!!! CACCTTTTTGAAGTATCAGC+AGG - chr5_4:42467012-42467031 Msa0851870:intron 40.0%
GACCTGCTGATACTTCAAAA+AGG + chr5_4:42467017-42467036 None:intergenic 40.0%
! GATTCTCTTGTAATGGGAGA+AGG - chr5_4:42467039-42467058 Msa0851870:intron 40.0%
!! CAACTTGTTTGACTTGTGCA+AGG + chr5_4:42467071-42467090 None:intergenic 40.0%
GTCAAACAAGTTGTGAAAGC+AGG - chr5_4:42467078-42467097 Msa0851870:intron 40.0%
AAAGCAGGACAAGGAGTTAA+TGG - chr5_4:42467093-42467112 Msa0851870:intron 40.0%
AGAATGCTAGTTATTGGAGC+TGG - chr5_4:42467276-42467295 Msa0851870:CDS 40.0%
AGTTATTGGAGCTGGCAAAA+TGG - chr5_4:42467284-42467303 Msa0851870:CDS 40.0%
GTTATTGGAGCTGGCAAAAT+GGG - chr5_4:42467285-42467304 Msa0851870:CDS 40.0%
TTATTGGAGCTGGCAAAATG+GGG - chr5_4:42467286-42467305 Msa0851870:CDS 40.0%
ACATTCGAGCATTTCCGAAA+GGG + chr5_4:42467433-42467452 None:intergenic 40.0%
TACATTCGAGCATTTCCGAA+AGG + chr5_4:42467434-42467453 None:intergenic 40.0%
TCGGAAATGCTCGAATGTAT+TGG - chr5_4:42467435-42467454 Msa0851870:intron 40.0%
TCCTTTAGCAAGCGAAGAAA+TGG - chr5_4:42467530-42467549 Msa0851870:intron 40.0%
CCTTTAGCAAGCGAAGAAAT+GGG - chr5_4:42467531-42467550 Msa0851870:intron 40.0%
ATTTCTGTTCCGAGAAACGT+AGG - chr5_4:42467576-42467595 Msa0851870:intron 40.0%
ACACATGAACCTACGTTTCT+CGG + chr5_4:42467588-42467607 None:intergenic 40.0%
CGATGATCTTGAGTCTGTTA+AGG - chr5_4:42467608-42467627 Msa0851870:intron 40.0%
TCTAAGCCTATCCTCTTTGT+TGG + chr5_4:42467670-42467689 None:intergenic 40.0%
GGATAGGCTTAGAAAAGCAA+TGG - chr5_4:42467677-42467696 Msa0851870:intron 40.0%
! ATGGAAGCACAAGTGATCAT+CGG - chr5_4:42467696-42467715 Msa0851870:intron 40.0%
! AATCGGGACAATTTGAAGCT+TGG - chr5_4:42467724-42467743 Msa0851870:intron 40.0%
GGGCTTATGCTGAAAGATTA+AGG - chr5_4:42467787-42467806 Msa0851870:intron 40.0%
AGCTGTGGATGATCTTAGTA+AGG - chr5_4:42467872-42467891 Msa0851870:intron 40.0%
GCTGTGGATGATCTTAGTAA+GGG - chr5_4:42467873-42467892 Msa0851870:intron 40.0%
CTGTGGATGATCTTAGTAAG+GGG - chr5_4:42467874-42467893 Msa0851870:intron 40.0%
! TTCTCAAGCCTTTAAGGGTA+AGG + chr5_4:42468144-42468163 None:intergenic 40.0%
GGCTCTATTTATGAGTTTGG+AGG + chr5_4:42468295-42468314 None:intergenic 40.0%
! TGAAAGAGGCACACACATTT+AGG + chr5_4:42468316-42468335 None:intergenic 40.0%
ATGTGTGTGCCTCTTTCAAT+CGG - chr5_4:42468318-42468337 Msa0851870:five_prime_UTR 40.0%
AGGAGCAGCATTGTCGTTAT+TGG - chr5_4:42466267-42466286 Msa0851870:CDS 45.0%
GGAGCAGCATTGTCGTTATT+GGG - chr5_4:42466268-42466287 Msa0851870:CDS 45.0%
TTGCCATACCAGAAGCAGAA+TGG - chr5_4:42466331-42466350 Msa0851870:CDS 45.0%
CAGTGACTTCTTTGACACCA+CGG + chr5_4:42466461-42466480 None:intergenic 45.0%
TTGTAGCTTCACACTTACCG+TGG + chr5_4:42466790-42466809 None:intergenic 45.0%
! TACTTTGACAGCTCTGATGC+AGG + chr5_4:42466958-42466977 None:intergenic 45.0%
CAAGTTGTGAAAGCAGGACA+AGG - chr5_4:42467084-42467103 Msa0851870:intron 45.0%
GGACAAGGAGTTAATGGCTT+TGG - chr5_4:42467099-42467118 Msa0851870:intron 45.0%
! GGCTTTGGTAGAAACATCAG+TGG - chr5_4:42467114-42467133 Msa0851870:intron 45.0%
TTACCTGATCAAGCCTCACA+TGG - chr5_4:42467246-42467265 Msa0851870:CDS 45.0%
CATTCTTGCATTGCCATGTG+AGG + chr5_4:42467262-42467281 None:intergenic 45.0%
CATTCGAGCATTTCCGAAAG+GGG + chr5_4:42467432-42467451 None:intergenic 45.0%
! CCCATTTCTTCGCTTGCTAA+AGG + chr5_4:42467534-42467553 None:intergenic 45.0%
TTAGCAAGCGAAGAAATGGG+AGG - chr5_4:42467534-42467553 Msa0851870:intron 45.0%
AGTGATCATCGGCGAAGAAT+CGG - chr5_4:42467707-42467726 Msa0851870:intron 45.0%
! GATGTGATGGGAGTGATAGT+AGG - chr5_4:42467937-42467956 Msa0851870:intron 45.0%
GGAGCAGAAGATTAGAGCTA+AGG - chr5_4:42468034-42468053 Msa0851870:CDS 45.0%
GCAGAAGATTAGAGCTAAGG+TGG - chr5_4:42468037-42468056 Msa0851870:CDS 45.0%
!!! TTTTTTTTATAATAATTTGT+TGG - chr5_4:42465765-42465784 Msa0851870:CDS 5.0%
! AGTTTTTCGCGCACATCGAC+TGG + chr5_4:42466312-42466331 None:intergenic 50.0%
AGGCCATTCTGCTTCTGGTA+TGG + chr5_4:42466337-42466356 None:intergenic 50.0%
CAAAGCTCACCAATGGCTCT+AGG + chr5_4:42466357-42466376 None:intergenic 50.0%
TTCAAGCACGCAATCACCGT+CGG - chr5_4:42467141-42467160 Msa0851870:intron 50.0%
ACGCAATCACCGTCGGTAAA+AGG - chr5_4:42467148-42467167 Msa0851870:intron 50.0%
CGCAATCACCGTCGGTAAAA+GGG - chr5_4:42467149-42467168 Msa0851870:intron 50.0%
! CTGCAATGTTGGTCTCGGTT+CGG + chr5_4:42467176-42467195 None:intergenic 50.0%
CGAGCTAACAGAAACTGCAC+CGG + chr5_4:42467199-42467218 None:intergenic 50.0%
CGGTGCAGTTTCTGTTAGCT+CGG - chr5_4:42467197-42467216 Msa0851870:CDS 50.0%
TTGCCATGTGAGGCTTGATC+AGG + chr5_4:42467252-42467271 None:intergenic 50.0%
TGGCTGCCAACAAAGAGGAT+AGG - chr5_4:42467661-42467680 Msa0851870:intron 50.0%
GTGATCATCGGCGAAGAATC+GGG - chr5_4:42467708-42467727 Msa0851870:intron 50.0%
! GCTCTAGGCCATTCTGCTTC+TGG + chr5_4:42466342-42466361 None:intergenic 55.0%
GCAGAATGGCCTAGAGCCAT+TGG - chr5_4:42466345-42466364 Msa0851870:CDS 55.0%
TCTGAGCACCTGCAACCGAA+TGG - chr5_4:42466407-42466426 Msa0851870:CDS 55.0%
! GGTTCGGACCCTTTTACCGA+CGG + chr5_4:42467160-42467179 None:intergenic 55.0%
ACCGAGACCAACATTGCAGC+CGG - chr5_4:42467177-42467196 Msa0851870:intron 55.0%
! ACCGGCTGCAATGTTGGTCT+CGG + chr5_4:42467181-42467200 None:intergenic 55.0%
!! AACTGCACCGGCTGCAATGT+TGG + chr5_4:42467187-42467206 None:intergenic 55.0%
GGTTGTGGCTGCCAACAAAG+AGG - chr5_4:42467656-42467675 Msa0851870:intron 55.0%
GTCGCACTTTCTCAGCACCG+TGG - chr5_4:42466441-42466460 Msa0851870:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 42465298 42468379 42465298 ID=Msa0851870;Name=Msa0851870
chr5_4 mRNA 42465298 42468379 42465298 ID=Msa0851870-mRNA-1;Parent=Msa0851870;Name=Msa0851870-mRNA-1;_AED=0.03;_eAED=0.03;_QI=125|1|1|1|1|1|3|303|541
chr5_4 exon 42465298 42466734 42465298 ID=Msa0851870-mRNA-1:exon:13473;Parent=Msa0851870-mRNA-1
chr5_4 exon 42467183 42467424 42467183 ID=Msa0851870-mRNA-1:exon:13472;Parent=Msa0851870-mRNA-1
chr5_4 exon 42468005 42468379 42468005 ID=Msa0851870-mRNA-1:exon:13471;Parent=Msa0851870-mRNA-1
chr5_4 five_prime_UTR 42468255 42468379 42468255 ID=Msa0851870-mRNA-1:five_prime_utr;Parent=Msa0851870-mRNA-1
chr5_4 CDS 42468005 42468254 42468005 ID=Msa0851870-mRNA-1:cds;Parent=Msa0851870-mRNA-1
chr5_4 CDS 42467183 42467424 42467183 ID=Msa0851870-mRNA-1:cds;Parent=Msa0851870-mRNA-1
chr5_4 CDS 42465601 42466734 42465601 ID=Msa0851870-mRNA-1:cds;Parent=Msa0851870-mRNA-1
chr5_4 three_prime_UTR 42465298 42465600 42465298 ID=Msa0851870-mRNA-1:three_prime_utr;Parent=Msa0851870-mRNA-1
Gene Sequence

>Msa0851870

ATGGCTGTTTCAACTAGTTTCTATGGTGCTAAATTGGAACCTTTGTTCCTTAAATGCTGTTCTTCTTCTTCAACATCATCATCCTCTTATGTTACTACTCATTTATCATTTTTTGGTAGTAACAAAAAGAGCTTTGTTCAAAGAGGTTCAATTCGTTGTGACGCTTCATCTTCTGATGTTTTGGTTGATCCTAGTGATAATGCTAAATCTGTTTCTGCACTACAACAGCTTAAAGCTTCTGCAACTGATAGATATACAAAGGAAAGGAGCAGCATTGTCGTTATTGGGCTAAGTATTCATACTACACCAGTCGATGTGCGCGAAAAACTTGCCATACCAGAAGCAGAATGGCCTAGAGCCATTGGTGAGCTTTGTAATCTGAATCATATTGAAGAAGCAGCAGTTCTGAGCACCTGCAACCGAATGGAGATATATGTTGTCGCACTTTCTCAGCACCGTGGTGTCAAAGAAGTCACTGAATGGATGTCCAATACAAGTGGTATACCTGCATCAGAGCTGTCAAAGTATCTATTTTTGCTATACAACAAGGATGCAACACAACACCTTTTTGAAGTATCAGCAGGTCTTGATTCTCTTGTAATGGGAGAAGGTCAAATCCTTGCACAAGTCAAACAAGTTGTGAAAGCAGGACAAGGAGTTAATGGCTTTGGTAGAAACATCAGTGGTCTATTCAAGCACGCAATCACCGTCGGTAAAAGGGTCCGAACCGAGACCAACATTGCAGCCGGTGCAGTTTCTGTTAGCTCGGCTGCAGTCGAATTAGCCTTGATGAAGTTACCTGATCAAGCCTCACATGGCAATGCAAGAATGCTAGTTATTGGAGCTGGCAAAATGGGGAAGCTTGTGATCAAACATTTGGTTGCAAAAGGGTGTAAAAAGATGGTAGTTGTTAATCGAACTGAAGGGAGAGTTGCAGCAATCCGTGAAGAAATAAATGATGTTGAGATAATTTACAAACCCCTTTCGGAAATGCTCGAATGTATTGGTGAAGCAGATGTTGTTTTCACAAGCACTGCATCAGAGAATCCTTTGATTTTGAAAGAAAATGTTAAGGAACTTCCTTTAGCAAGCGAAGAAATGGGAGGAAAACGCCTCTTCGTAGATATTTCTGTTCCGAGAAACGTAGGTTCATGTGTCGATGATCTTGAGTCTGTTAAGGTTTACAATGTTGATGATCTTAAAGAGGTTGTGGCTGCCAACAAAGAGGATAGGCTTAGAAAAGCAATGGAAGCACAAGTGATCATCGGCGAAGAATCGGGACAATTTGAAGCTTGGAGAGACTCATTAGAAACTGTTCCAACCATTAAGAAATTAAGGGCTTATGCTGAAAGATTAAGGGTTGCTGAACTTGAGAAATGTTTAGGTAAAATGGGTGATGATATAAATAAGAAGACACAAAAAGCTGTGGATGATCTTAGTAAGGGGATTGTGAATAAAATGCTTCATGGTCCAATGCAACATTTGAGATGTGATGGGAGTGATAGTAGGACTTTGAGTGAGACACTTGAGAATATGCATGCTTTGAACAGAATGTTTAGTCTTGAAACTGAGGTTTCTGTTTTGGAGCAGAAGATTAGAGCTAAGGTGGAGCAAAAACCACAGTAA

Protein sequence

>Msa0851870

MAVSTSFYGAKLEPLFLKCCSSSSTSSSSYVTTHLSFFGSNKKSFVQRGSIRCDASSSDVLVDPSDNAKSVSALQQLKASATDRYTKERSSIVVIGLSIHTTPVDVREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSNTSGIPASELSKYLFLLYNKDATQHLFEVSAGLDSLVMGEGQILAQVKQVVKAGQGVNGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPDQASHGNARMLVIGAGKMGKLVIKHLVAKGCKKMVVVNRTEGRVAAIREEINDVEIIYKPLSEMLECIGEADVVFTSTASENPLILKENVKELPLASEEMGGKRLFVDISVPRNVGSCVDDLESVKVYNVDDLKEVVAANKEDRLRKAMEAQVIIGEESGQFEAWRDSLETVPTIKKLRAYAERLRVAELEKCLGKMGDDINKKTQKAVDDLSKGIVNKMLHGPMQHLRCDGSDSRTLSETLENMHALNRMFSLETEVSVLEQKIRAKVEQKPQ*