AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0565930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0565930 MtrunA17_Chr8g0380461 96.726 336 10 1 1 336 1 335 0.0 664
Msa0565930 MtrunA17_Chr7g0269121 41.860 86 50 0 224 309 75 160 9.74e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0565930 AT1G55480.1 68.944 322 89 5 21 336 19 335 3.43e-145 413
Msa0565930 AT1G02910.2 39.535 86 52 0 224 309 82 167 2.49e-11 64.7
Msa0565930 AT1G02910.1 39.535 86 52 0 224 309 82 167 2.55e-11 64.7

Find 85 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAAGAAGCTCTGAATTC+TGG 0.219177 4_1:-66815235 Msa0565930:CDS
TTCAATAATGGATCGAATTC+CGG 0.233768 4_1:+66815076 None:intergenic
AATGCCATCAAATCAATATT+TGG 0.237285 4_1:-66815016 Msa0565930:CDS
TGCTGATTTACGTAGTTAAA+TGG 0.237863 4_1:-66814595 Msa0565930:three_prime_UTR
TATTCCAAATATTGATTTGA+TGG 0.245252 4_1:+66815012 None:intergenic
TATGGAATCAAATTTGTAAA+AGG 0.254004 4_1:-66818450 Msa0565930:CDS
AGAGAAATTTGAGTCTGTTC+TGG 0.274480 4_1:-66816925 Msa0565930:CDS
ATTTGGCCAGCTGCAGAATA+TGG 0.304170 4_1:-66817885 Msa0565930:CDS
TCTCTTTGATTCATGCAATA+AGG 0.311805 4_1:+66814693 None:intergenic
TCAATAATGGATCGAATTCC+GGG 0.313549 4_1:+66815077 None:intergenic
TGAGTAACGGTCCAATTCTT+TGG 0.315025 4_1:+66817841 None:intergenic
ACCTCTCATCTTCTTCTTTG+TGG 0.326142 4_1:-66818839 Msa0565930:five_prime_UTR
ACTGCTGCTTCATCAGGTTC+TGG 0.337193 4_1:+66816894 None:intergenic
GAAGAAATCAACTTGGTAAT+GGG 0.348079 4_1:+66818633 None:intergenic
ACTGATACTAATATTATTGT+TGG 0.353673 4_1:+66814748 None:intergenic
ATCCTGACCTTGCTAACTTA+AGG 0.358663 4_1:-66815105 Msa0565930:CDS
ATGAAGCTTTAACCACAAAA+AGG 0.369840 4_1:+66818568 None:intergenic
TACACAATTCGCCAAAGAAT+TGG 0.370489 4_1:-66817852 Msa0565930:CDS
AGAGAGCTGTAAATGCTATT+AGG 0.374794 4_1:+66814717 None:intergenic
CTTTCTTGTGTCCATACAAA+GGG 0.376392 4_1:+66814948 None:intergenic
TATTGATTTGATGGCATTGA+TGG 0.383403 4_1:+66815021 None:intergenic
CTTGCGACTGCTGCTTCATC+AGG 0.385633 4_1:+66816888 None:intergenic
GGAAGAAATCAACTTGGTAA+TGG 0.386365 4_1:+66818632 None:intergenic
TAATGGGAAAATAATGAGTT+GGG 0.394318 4_1:+66818649 None:intergenic
GTAGAGATTGATCAGCCTTA+TGG 0.398067 4_1:-66818468 Msa0565930:CDS
GAGAAGGCTTATTACTATAC+AGG 0.400934 4_1:-66817398 Msa0565930:intron
TTTACAAATTTGATTCCATA+AGG 0.407340 4_1:+66818453 None:intergenic
GAGAGAAATGTTATGTTCCT+TGG 0.418425 4_1:+66818805 None:intergenic
GAGAAATTTGAGTCTGTTCT+GGG 0.421833 4_1:-66816924 Msa0565930:CDS
TCCTGACCTTGCTAACTTAA+GGG 0.425185 4_1:-66815104 Msa0565930:CDS
AATTCAGGAAAGATAGAAAC+TGG 0.428336 4_1:-66817688 Msa0565930:intron
GTCCTTCCATATTCTGCAGC+TGG 0.428621 4_1:+66817879 None:intergenic
TTGATTTGGGTGGTTCTTGT+TGG 0.431508 4_1:+66818684 None:intergenic
TCTACCTCGTATTCTTCATA+TGG 0.432690 4_1:+66818486 None:intergenic
TCAGCATCATATAAAGATCA+AGG 0.442973 4_1:+66814612 None:intergenic
TGGTGGTGATTTAACTGAAA+AGG 0.465918 4_1:-66817668 Msa0565930:CDS
ATGAGAATGCAGAAGAGATA+TGG 0.467750 4_1:-66817819 Msa0565930:intron
ACCTGGTGGATCAGCTGATA+AGG 0.468201 4_1:-66818394 Msa0565930:CDS
GCCCTTAAGTTAGCAAGGTC+AGG 0.473310 4_1:+66815103 None:intergenic
AAAAGAAGTGAAAGAGGGTC+GGG 0.478878 4_1:-66817433 Msa0565930:CDS
CTGAAGGAATGCTAAATATG+AGG 0.486992 4_1:-66816955 Msa0565930:intron
TCCAAAGAAGAGAGTGAAAA+GGG 0.495005 4_1:-66818525 Msa0565930:CDS
GTGTAGTCAGTAACAAATTG+AGG 0.501089 4_1:-66817618 Msa0565930:CDS
GCTTTCTTGTGTCCATACAA+AGG 0.502554 4_1:+66814947 None:intergenic
GTAATGGGAAAATAATGAGT+TGG 0.504617 4_1:+66818648 None:intergenic
TGCTAACTTAAGGGCATCCC+CGG 0.505200 4_1:-66815095 Msa0565930:CDS
GTTATGTTAAGCTCAAAACT+TGG 0.516234 4_1:+66818762 None:intergenic
ATCCAAAGAAGAGAGTGAAA+AGG 0.523109 4_1:-66818526 Msa0565930:CDS
TTCAGATGCAAAACTACCTA+AGG 0.524675 4_1:-66817458 Msa0565930:intron
CGGGAAAATGATTTGAGAGA+AGG 0.524777 4_1:-66817414 Msa0565930:CDS
AAGGCTGGTGTCTTCACTGT+TGG 0.533258 4_1:-66818375 Msa0565930:CDS
GTGATAAAGTACTTGCCACC+AGG 0.541930 4_1:-66818353 Msa0565930:intron
GCCTTATCAGCTGATCCACC+AGG 0.542146 4_1:+66818393 None:intergenic
TGTAGTCAGTAACAAATTGA+GGG 0.542149 4_1:-66817617 Msa0565930:CDS
GAAGAGAGTGAAAAGGGTGA+AGG 0.542694 4_1:-66818519 Msa0565930:CDS
GGTTAAAGCTTCATCTGAAG+TGG 0.543836 4_1:-66818559 Msa0565930:CDS
ATTAGAGCTGAGAGGAACTC+TGG 0.547874 4_1:-66817640 Msa0565930:CDS
ATGTTATGTTCCTTGGAGCA+TGG 0.560893 4_1:+66818812 None:intergenic
CACGGAGAAATCAAATGTGG+TGG 0.571593 4_1:+66814882 None:intergenic
TACATTGATGCTATTGCACC+TGG 0.576493 4_1:-66818411 Msa0565930:CDS
TTCTGCATTCTCATGAGTAA+CGG 0.581312 4_1:+66817828 None:intergenic
TTGCTTGGAGTTGATTTGGG+TGG 0.584554 4_1:+66818674 None:intergenic
TTGTGGTAAGCCATGCTCCA+AGG 0.588816 4_1:-66818822 Msa0565930:five_prime_UTR
GGTGGATCAGCTGATAAGGC+TGG 0.589206 4_1:-66818390 Msa0565930:CDS
TTTGTAAAAGGAAGAGATGG+TGG 0.593264 4_1:-66818438 Msa0565930:CDS
GTTAAAGCTTCATCTGAAGT+GGG 0.593313 4_1:-66818558 Msa0565930:CDS
CAGCATCATATAAAGATCAA+GGG 0.593819 4_1:+66814613 None:intergenic
AAATTTGTAAAAGGAAGAGA+TGG 0.594574 4_1:-66818441 Msa0565930:CDS
AAAGTGTATTGGAAAATGAG+TGG 0.595653 4_1:+66818604 None:intergenic
GGCCAGCTGCAGAATATGGA+AGG 0.601298 4_1:-66817881 Msa0565930:CDS
TTGTAAATGTTACTTCGACA+TGG 0.605762 4_1:-66814664 Msa0565930:three_prime_UTR
TGCAGAGTAGTGACCACTAG+TGG 0.612603 4_1:+66818716 None:intergenic
TTGTTACTCTAAGCTAAACC+AGG 0.621899 4_1:-66816850 Msa0565930:intron
GGGATGCCCTTAAGTTAGCA+AGG 0.635366 4_1:+66815098 None:intergenic
ATTGATGCTATTGCACCTGG+TGG 0.648922 4_1:-66818408 Msa0565930:CDS
TTTCTTGTGTCCATACAAAG+GGG 0.650984 4_1:+66814949 None:intergenic
TCTATGTCTACCACCACTAG+TGG 0.662172 4_1:-66818729 Msa0565930:CDS
ACCACAAAGAAGAAGATGAG+AGG 0.665152 4_1:+66818838 None:intergenic
CAATAATGGATCGAATTCCG+GGG 0.672051 4_1:+66815078 None:intergenic
AGGAGATCATTAGAGCTGAG+AGG 0.676541 4_1:-66817648 Msa0565930:CDS
ATACACGGAGAAATCAAATG+TGG 0.688691 4_1:+66814879 None:intergenic
TCAGGAAAGATAGAAACTGG+TGG 0.695306 4_1:-66817685 Msa0565930:intron
AGAGTAGTGACCACTAGTGG+TGG 0.708512 4_1:+66818719 None:intergenic
AGAGCCATATGAAGAATACG+AGG 0.728582 4_1:-66818490 Msa0565930:CDS
GGTAGACATAGATAATGACA+TGG 0.735400 4_1:+66818740 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTCTTCTAATTAT+GGG + chr4_1:66818496-66818515 None:intergenic 10.0%
!!! TTTTTTTTTTCTTCTAATTA+TGG + chr4_1:66818497-66818516 None:intergenic 10.0%
!!! ATATTTTTGTAGTTAAATAT+AGG - chr4_1:66818608-66818627 Msa0565930:CDS 10.0%
!!! TGAAAGTTTCTTTTTTTTTT+TGG - chr4_1:66815196-66815215 Msa0565930:intron 15.0%
!! TTAAGATTAAGATGAAAATA+GGG - chr4_1:66816885-66816904 Msa0565930:CDS 15.0%
!! ATTAAACAAACAAATTGATT+TGG - chr4_1:66818130-66818149 Msa0565930:intron 15.0%
!!! TTTTTTTTCTTCTAATTATG+GGG + chr4_1:66818495-66818514 None:intergenic 15.0%
!! TTTAACTACAAAAATATACA+CGG + chr4_1:66818605-66818624 None:intergenic 15.0%
!! TTTACAAATTTGATTCCATA+AGG + chr4_1:66815016-66815035 None:intergenic 20.0%
!! TATGGAATCAAATTTGTAAA+AGG - chr4_1:66815016-66815035 Msa0565930:CDS 20.0%
!!! TCTTTGATCAATAATTTTTG+AGG - chr4_1:66815506-66815525 Msa0565930:intron 20.0%
!!! TTTTCTTTCTGTCTTTATTT+CGG - chr4_1:66816116-66816135 Msa0565930:intron 20.0%
!! TAAAGTAAGGAATAAAGTAT+TGG - chr4_1:66816297-66816316 Msa0565930:intron 20.0%
!!! ATTTTTTGACAGAAAGTTAT+TGG + chr4_1:66816789-66816808 None:intergenic 20.0%
!! GTTAAGATTAAGATGAAAAT+AGG - chr4_1:66816884-66816903 Msa0565930:CDS 20.0%
!! TAAGATTAAGATGAAAATAG+GGG - chr4_1:66816886-66816905 Msa0565930:CDS 20.0%
!! TTGGAATATAGTTTCTTAAA+TGG + chr4_1:66817018-66817037 None:intergenic 20.0%
!! TTGGAATATAGTTTCTTAAA+TGG + chr4_1:66817018-66817037 None:intergenic 20.0%
!! TATATATATTGACATTAGAG+CGG - chr4_1:66817413-66817432 Msa0565930:CDS 20.0%
!! TATATATATTGACATTAGAG+CGG - chr4_1:66817413-66817432 Msa0565930:CDS 20.0%
!!! ATGTAATTAAAGCATCATTT+AGG - chr4_1:66817674-66817693 Msa0565930:CDS 20.0%
!!! TGTAATTAAAGCATCATTTA+GGG - chr4_1:66817675-66817694 Msa0565930:CDS 20.0%
!! TATATATATTGACATTAGAG+CGG - chr4_1:66817413-66817432 Msa0565930:CDS 20.0%
!!! ATGTAATTAAAGCATCATTT+AGG - chr4_1:66817674-66817693 Msa0565930:CDS 20.0%
!!! TGTAATTAAAGCATCATTTA+GGG - chr4_1:66817675-66817694 Msa0565930:CDS 20.0%
!! CAAATGTTAAAAGGAAAAAT+GGG + chr4_1:66818080-66818099 None:intergenic 20.0%
!! TCAAATGTTAAAAGGAAAAA+TGG + chr4_1:66818081-66818100 None:intergenic 20.0%
!!! ACTTTATTAGCATATTGATT+AGG + chr4_1:66818172-66818191 None:intergenic 20.0%
!!! TCATCAAATCTTTTCAATAA+TGG + chr4_1:66818405-66818424 None:intergenic 20.0%
!!! TATTCCAAATATTGATTTGA+TGG + chr4_1:66818457-66818476 None:intergenic 20.0%
!! ACTGATACTAATATTATTGT+TGG + chr4_1:66818721-66818740 None:intergenic 20.0%
! TAATGGGAAAATAATGAGTT+GGG + chr4_1:66814820-66814839 None:intergenic 25.0%
! AAATTTGTAAAAGGAAGAGA+TGG - chr4_1:66815025-66815044 Msa0565930:CDS 25.0%
! GAGAATTATAGATAGATGTT+TGG - chr4_1:66815220-66815239 Msa0565930:CDS 25.0%
! TGTTCAAGATAGTTATTTGA+AGG - chr4_1:66815273-66815292 Msa0565930:intron 25.0%
! GTTCAAGATAGTTATTTGAA+GGG - chr4_1:66815274-66815293 Msa0565930:intron 25.0%
! TGCCTTATGTATATTAAATG+AGG - chr4_1:66815425-66815444 Msa0565930:intron 25.0%
! CACCTCATTTAATATACATA+AGG + chr4_1:66815430-66815449 None:intergenic 25.0%
!! AGAAGTTGAACATTTTCATT+CGG + chr4_1:66815538-66815557 None:intergenic 25.0%
! ACAAGTTTGAGAAATGAAAA+TGG + chr4_1:66815982-66816001 None:intergenic 25.0%
! AGTAATAAAGTGTGCAATAA+TGG + chr4_1:66816266-66816285 None:intergenic 25.0%
! AAATTGGACAAAAATATACC+TGG + chr4_1:66816637-66816656 None:intergenic 25.0%
! AGCACATATAATCTGTAAAT+TGG + chr4_1:66816653-66816672 None:intergenic 25.0%
! TAGTCACTCACATATATAAA+AGG + chr4_1:66816759-66816778 None:intergenic 25.0%
! AGAGCAAATTAAATTGTGTA+TGG - chr4_1:66816836-66816855 Msa0565930:intron 25.0%
! GAGCAAATTAAATTGTGTAT+GGG - chr4_1:66816837-66816856 Msa0565930:intron 25.0%
!! TATAACTTGTCAAAAGTAGT+TGG - chr4_1:66816976-66816995 Msa0565930:intron 25.0%
!! ATAACTTGTCAAAAGTAGTT+GGG - chr4_1:66816977-66816996 Msa0565930:intron 25.0%
!! GTAATTAAAGCATCATTTAG+GGG - chr4_1:66817676-66817695 Msa0565930:CDS 25.0%
! AATATGAACCCAAAAAATGA+TGG + chr4_1:66817797-66817816 None:intergenic 25.0%
! AATATGAACTCAAAAACTGA+TGG + chr4_1:66817832-66817851 None:intergenic 25.0%
!!! TTTTGAGTTCATATTTGTAG+AGG - chr4_1:66817837-66817856 Msa0565930:CDS 25.0%
!! TCTAATAAGTTTTGCATAAG+AGG - chr4_1:66817910-66817929 Msa0565930:intron 25.0%
!! GTAATTAAAGCATCATTTAG+GGG - chr4_1:66817676-66817695 Msa0565930:CDS 25.0%
! AAATTGGTGTAATTGATTGA+TGG - chr4_1:66818030-66818049 Msa0565930:intron 25.0%
!!! TTGATTGATGGTTGTTTTAA+TGG - chr4_1:66818042-66818061 Msa0565930:intron 25.0%
!! TCCTTTTAACATTTGAGTAT+TGG - chr4_1:66818085-66818104 Msa0565930:intron 25.0%
! ACCAATACTCAAATGTTAAA+AGG + chr4_1:66818089-66818108 None:intergenic 25.0%
! AATGCCATCAAATCAATATT+TGG - chr4_1:66818450-66818469 Msa0565930:CDS 25.0%
! AAAAAAAAAACCCCTTTGTA+TGG - chr4_1:66818507-66818526 Msa0565930:CDS 25.0%
!!! ATTTTTGTCATTTGTTGGAT+TGG - chr4_1:66818637-66818656 Msa0565930:CDS 25.0%
GTTATGTTAAGCTCAAAACT+TGG + chr4_1:66814707-66814726 None:intergenic 30.0%
! GTAATGGGAAAATAATGAGT+TGG + chr4_1:66814821-66814840 None:intergenic 30.0%
! GAAGAAATCAACTTGGTAAT+GGG + chr4_1:66814836-66814855 None:intergenic 30.0%
!! GTTTTTGGAAGAAATCAACT+TGG + chr4_1:66814843-66814862 None:intergenic 30.0%
! ATTGGAAAATGAGTGGTTTT+TGG + chr4_1:66814858-66814877 None:intergenic 30.0%
AAAGTGTATTGGAAAATGAG+TGG + chr4_1:66814865-66814884 None:intergenic 30.0%
! ATGAAGCTTTAACCACAAAA+AGG + chr4_1:66814901-66814920 None:intergenic 30.0%
TGAAGGGATTAATATCTGAT+TGG - chr4_1:66815290-66815309 Msa0565930:intron 30.0%
GGATTAATATCTGATTGGAT+TGG - chr4_1:66815295-66815314 Msa0565930:intron 30.0%
AATTCAGGAAAGATAGAAAC+TGG - chr4_1:66815778-66815797 Msa0565930:intron 30.0%
TGTAGTCAGTAACAAATTGA+GGG - chr4_1:66815849-66815868 Msa0565930:intron 30.0%
!! ACAGATTAGCAGTTTTAACA+TGG + chr4_1:66815893-66815912 None:intergenic 30.0%
!!! CTTTCACTTCTTTTTTCCTT+AGG + chr4_1:66816027-66816046 None:intergenic 30.0%
AAGGAAAAAAGAAGTGAAAG+AGG - chr4_1:66816027-66816046 Msa0565930:intron 30.0%
AGGAAAAAAGAAGTGAAAGA+GGG - chr4_1:66816028-66816047 Msa0565930:intron 30.0%
TTTCCCTTGACATTTCATAA+TGG - chr4_1:66816170-66816189 Msa0565930:intron 30.0%
CTTCCATTATGAAATGTCAA+GGG + chr4_1:66816176-66816195 None:intergenic 30.0%
ACTTCCATTATGAAATGTCA+AGG + chr4_1:66816177-66816196 None:intergenic 30.0%
TTCCTTACTTTAATAAGCAG+TGG + chr4_1:66816289-66816308 None:intergenic 30.0%
!!! GCTTTTTTCTCTCTCAAAAT+AGG + chr4_1:66816397-66816416 None:intergenic 30.0%
!! CGAAGCATCTATTTTAGATT+AGG - chr4_1:66816425-66816444 Msa0565930:intron 30.0%
ATATATGTGAGTGACTAACT+TGG - chr4_1:66816762-66816781 Msa0565930:intron 30.0%
!! AATTTAATTTGCTCTGCAGT+AGG + chr4_1:66816831-66816850 None:intergenic 30.0%
! TAAATCAGCCACAATGTTTT+TGG - chr4_1:66816943-66816962 Msa0565930:CDS 30.0%
! TAACTTGTCAAAAGTAGTTG+GGG - chr4_1:66816978-66816997 Msa0565930:intron 30.0%
TAAATGGTGTAGCATTAAGT+TGG + chr4_1:66817037-66817056 None:intergenic 30.0%
TACCATATTCTAACCAATGT+GGG + chr4_1:66817108-66817127 None:intergenic 30.0%
!!! TTTTTTGGGTTCATATTGTG+TGG - chr4_1:66817800-66817819 Msa0565930:intron 30.0%
TGATTAGGTAAATGAATGAC+AGG + chr4_1:66818157-66818176 None:intergenic 30.0%
!! TTCAATAATGGATCGAATTC+CGG + chr4_1:66818393-66818412 None:intergenic 30.0%
!! TATTGATTTGATGGCATTGA+TGG + chr4_1:66818448-66818467 None:intergenic 30.0%
!! CTCTCATTTTTGTCATTTGT+TGG - chr4_1:66818632-66818651 Msa0565930:CDS 30.0%
TCTCTTTGATTCATGCAATA+AGG + chr4_1:66818776-66818795 None:intergenic 30.0%
! TTGTAAATGTTACTTCGACA+TGG - chr4_1:66818802-66818821 Msa0565930:five_prime_UTR 30.0%
! GTCTGAGTGTGTTAAATTTT+AGG - chr4_1:66818824-66818843 Msa0565930:five_prime_UTR 30.0%
CAGCATCATATAAAGATCAA+GGG + chr4_1:66818856-66818875 None:intergenic 30.0%
TCAGCATCATATAAAGATCA+AGG + chr4_1:66818857-66818876 None:intergenic 30.0%
GAGAGAAATGTTATGTTCCT+TGG + chr4_1:66814664-66814683 None:intergenic 35.0%
GGTAGACATAGATAATGACA+TGG + chr4_1:66814729-66814748 None:intergenic 35.0%
!! GTTTTGCTTGGAGTTGATTT+GGG + chr4_1:66814798-66814817 None:intergenic 35.0%
!! ATAATGAGTTGGGTTTTGCT+TGG + chr4_1:66814810-66814829 None:intergenic 35.0%
GGAAGAAATCAACTTGGTAA+TGG + chr4_1:66814837-66814856 None:intergenic 35.0%
GCTTTAACCACAAAAAGGAA+CGG + chr4_1:66814896-66814915 None:intergenic 35.0%
! GTTAAAGCTTCATCTGAAGT+GGG - chr4_1:66814908-66814927 Msa0565930:three_prime_UTR 35.0%
ATCCAAAGAAGAGAGTGAAA+AGG - chr4_1:66814940-66814959 Msa0565930:three_prime_UTR 35.0%
TCCAAAGAAGAGAGTGAAAA+GGG - chr4_1:66814941-66814960 Msa0565930:three_prime_UTR 35.0%
TCTACCTCGTATTCTTCATA+TGG + chr4_1:66814983-66815002 None:intergenic 35.0%
TTTGTAAAAGGAAGAGATGG+TGG - chr4_1:66815028-66815047 Msa0565930:CDS 35.0%
! ATGAAAAGCACAAACAAACC+TGG + chr4_1:66815134-66815153 None:intergenic 35.0%
AAGACTGTTTGAGAGAGTTA+TGG - chr4_1:66815375-66815394 Msa0565930:intron 35.0%
!!! CTGTTTTTGGGACTGAAATT+TGG - chr4_1:66815564-66815583 Msa0565930:intron 35.0%
TACACAATTCGCCAAAGAAT+TGG - chr4_1:66815614-66815633 Msa0565930:intron 35.0%
TTCTGCATTCTCATGAGTAA+CGG + chr4_1:66815641-66815660 None:intergenic 35.0%
ATGAGAATGCAGAAGAGATA+TGG - chr4_1:66815647-66815666 Msa0565930:intron 35.0%
TTGTTTGTGAACTTAGCTCA+CGG - chr4_1:66815735-66815754 Msa0565930:intron 35.0%
! GAATTGATAACCATGGTTCA+TGG + chr4_1:66815763-66815782 None:intergenic 35.0%
TGAACCATGGTTATCAATTC+AGG - chr4_1:66815763-66815782 Msa0565930:intron 35.0%
! CTTTCCTGAATTGATAACCA+TGG + chr4_1:66815770-66815789 None:intergenic 35.0%
! TGGTGGTGATTTAACTGAAA+AGG - chr4_1:66815798-66815817 Msa0565930:intron 35.0%
GTGTAGTCAGTAACAAATTG+AGG - chr4_1:66815848-66815867 Msa0565930:intron 35.0%
!!! ATTTTTTCTCCCATGTGATG+TGG - chr4_1:66815948-66815967 Msa0565930:intron 35.0%
!!! TTTTTTCTCCCATGTGATGT+GGG - chr4_1:66815949-66815968 Msa0565930:intron 35.0%
TTCAGATGCAAAACTACCTA+AGG - chr4_1:66816008-66816027 Msa0565930:intron 35.0%
AAAAAGAAGTGAAAGAGGGT+CGG - chr4_1:66816032-66816051 Msa0565930:intron 35.0%
GAGAAGGCTTATTACTATAC+AGG - chr4_1:66816068-66816087 Msa0565930:intron 35.0%
! AAAACGATTTTCTGAGTCAC+TGG + chr4_1:66816100-66816119 None:intergenic 35.0%
GTCAAGGGAAAGATAAATGA+AGG + chr4_1:66816161-66816180 None:intergenic 35.0%
CTCCACTGCTTATTAAAGTA+AGG - chr4_1:66816284-66816303 Msa0565930:intron 35.0%
CTTGTCAGACATTATAGACA+TGG - chr4_1:66816330-66816349 Msa0565930:intron 35.0%
CTGAAGGAATGCTAAATATG+AGG - chr4_1:66816511-66816530 Msa0565930:intron 35.0%
AGAGAAATTTGAGTCTGTTC+TGG - chr4_1:66816541-66816560 Msa0565930:intron 35.0%
GAGAAATTTGAGTCTGTTCT+GGG - chr4_1:66816542-66816561 Msa0565930:intron 35.0%
TTGTTACTCTAAGCTAAACC+AGG - chr4_1:66816616-66816635 Msa0565930:intron 35.0%
TCTATTCAGCAAGCTATACA+AGG + chr4_1:66816730-66816749 None:intergenic 35.0%
!!! GCCACAATGTTTTTGGTTTA+CGG - chr4_1:66816950-66816969 Msa0565930:CDS 35.0%
ACCGTAAACCAAAAACATTG+TGG + chr4_1:66816954-66816973 None:intergenic 35.0%
AAGATGGTGTAGCATTAAGT+TGG + chr4_1:66817072-66817091 None:intergenic 35.0%
AACTTAATGCTACACCATCT+TGG - chr4_1:66817071-66817090 Msa0565930:intron 35.0%
GTACCATATTCTAACCAATG+TGG + chr4_1:66817109-66817128 None:intergenic 35.0%
TTTATAAAAGTCTGCCATGC+TGG - chr4_1:66817138-66817157 Msa0565930:intron 35.0%
TCACCTCTTATGCAAAACTT+AGG + chr4_1:66817387-66817406 None:intergenic 35.0%
! TAAGTTTTGCATAAGAGGTG+AGG - chr4_1:66817386-66817405 Msa0565930:intron 35.0%
! AAGTTTTGCATAAGAGGTGA+GGG - chr4_1:66817387-66817406 Msa0565930:intron 35.0%
TATATTGACATTAGAGCGGA+AGG - chr4_1:66817417-66817436 Msa0565930:CDS 35.0%
ATATTGACATTAGAGCGGAA+GGG - chr4_1:66817418-66817437 Msa0565930:CDS 35.0%
TCACCTCTTATGCAAAACTT+AGG + chr4_1:66817387-66817406 None:intergenic 35.0%
TATATTGACATTAGAGCGGA+AGG - chr4_1:66817417-66817436 Msa0565930:CDS 35.0%
ATATTGACATTAGAGCGGAA+GGG - chr4_1:66817418-66817437 Msa0565930:CDS 35.0%
! ATTAAAGCATCATTTAGGGG+AGG - chr4_1:66817679-66817698 Msa0565930:CDS 35.0%
! TTAAAGCATCATTTAGGGGA+GGG - chr4_1:66817680-66817699 Msa0565930:CDS 35.0%
CCAAAAAATGATGGTTCAAG+GGG + chr4_1:66817788-66817807 None:intergenic 35.0%
CCCAAAAAATGATGGTTCAA+GGG + chr4_1:66817789-66817808 None:intergenic 35.0%
!!! CCCTTGAACCATCATTTTTT+GGG - chr4_1:66817786-66817805 Msa0565930:intron 35.0%
ACCCAAAAAATGATGGTTCA+AGG + chr4_1:66817790-66817809 None:intergenic 35.0%
! AACTCAAAAACTGATGGTGA+TGG + chr4_1:66817826-66817845 None:intergenic 35.0%
ATGCAATTGAAGCTTCTTTC+AGG - chr4_1:66817868-66817887 Msa0565930:CDS 35.0%
TGCAATTGAAGCTTCTTTCA+GGG - chr4_1:66817869-66817888 Msa0565930:CDS 35.0%
! TAAGTTTTGCATAAGAGGTG+AGG - chr4_1:66817386-66817405 Msa0565930:intron 35.0%
! AAGTTTTGCATAAGAGGTGA+GGG - chr4_1:66817387-66817406 Msa0565930:intron 35.0%
TATATTGACATTAGAGCGGA+AGG - chr4_1:66817417-66817436 Msa0565930:CDS 35.0%
ATATTGACATTAGAGCGGAA+GGG - chr4_1:66817418-66817437 Msa0565930:CDS 35.0%
! ATTAAAGCATCATTTAGGGG+AGG - chr4_1:66817679-66817698 Msa0565930:CDS 35.0%
! TTAAAGCATCATTTAGGGGA+GGG - chr4_1:66817680-66817699 Msa0565930:CDS 35.0%
!!! TTCTGGTTTTGAAGACTTCA+AGG - chr4_1:66818248-66818267 Msa0565930:intron 35.0%
GTTAAAACAGCAACAGTGTT+AGG + chr4_1:66818326-66818345 None:intergenic 35.0%
!! TCAATAATGGATCGAATTCC+GGG + chr4_1:66818392-66818411 None:intergenic 35.0%
TTTCTTGTGTCCATACAAAG+GGG + chr4_1:66818520-66818539 None:intergenic 35.0%
CTTTCTTGTGTCCATACAAA+GGG + chr4_1:66818521-66818540 None:intergenic 35.0%
!!! GCAAACATTTTAGCTGACTA+AGG - chr4_1:66818540-66818559 Msa0565930:CDS 35.0%
ATACACGGAGAAATCAAATG+TGG + chr4_1:66818590-66818609 None:intergenic 35.0%
AGAGAGCTGTAAATGCTATT+AGG + chr4_1:66818752-66818771 None:intergenic 35.0%
! CTGTGTAGATTTTGCTGAAG+TGG + chr4_1:66814606-66814625 None:intergenic 40.0%
ACCTCTCATCTTCTTCTTTG+TGG - chr4_1:66814627-66814646 Msa0565930:three_prime_UTR 40.0%
ACCACAAAGAAGAAGATGAG+AGG + chr4_1:66814631-66814650 None:intergenic 40.0%
ATGTTATGTTCCTTGGAGCA+TGG + chr4_1:66814657-66814676 None:intergenic 40.0%
!! TTGATTTGGGTGGTTCTTGT+TGG + chr4_1:66814785-66814804 None:intergenic 40.0%
!! GGTTTTGCTTGGAGTTGATT+TGG + chr4_1:66814799-66814818 None:intergenic 40.0%
!! CGGTTTTGGCAAAAGTGTAT+TGG + chr4_1:66814876-66814895 None:intergenic 40.0%
! ACCACAAAAAGGAACGGTTT+TGG + chr4_1:66814890-66814909 None:intergenic 40.0%
GGTTAAAGCTTCATCTGAAG+TGG - chr4_1:66814907-66814926 Msa0565930:three_prime_UTR 40.0%
! ACCCTTTTCACTCTCTTCTT+TGG + chr4_1:66814945-66814964 None:intergenic 40.0%
AGAGCCATATGAAGAATACG+AGG - chr4_1:66814976-66814995 Msa0565930:three_prime_UTR 40.0%
GTAGAGATTGATCAGCCTTA+TGG - chr4_1:66814998-66815017 Msa0565930:CDS 40.0%
TACATTGATGCTATTGCACC+TGG - chr4_1:66815055-66815074 Msa0565930:CDS 40.0%
! AAAAGCACAAACAAACCTGG+TGG + chr4_1:66815131-66815150 None:intergenic 40.0%
!!! AACTTCTGCAGTGCTGTTTT+TGG - chr4_1:66815551-66815570 Msa0565930:intron 40.0%
!!! ACTTCTGCAGTGCTGTTTTT+GGG - chr4_1:66815552-66815571 Msa0565930:intron 40.0%
TGAGTAACGGTCCAATTCTT+TGG + chr4_1:66815628-66815647 None:intergenic 40.0%
TCAGGAAAGATAGAAACTGG+TGG - chr4_1:66815781-66815800 Msa0565930:intron 40.0%
! TTTTTCTCCCATGTGATGTG+GGG - chr4_1:66815950-66815969 Msa0565930:intron 40.0%
AAAAGAAGTGAAAGAGGGTC+GGG - chr4_1:66816033-66816052 Msa0565930:intron 40.0%
CGGGAAAATGATTTGAGAGA+AGG - chr4_1:66816052-66816071 Msa0565930:intron 40.0%
AGTGAACGGTAAGGATATCA+GGG + chr4_1:66816473-66816492 None:intergenic 40.0%
GAATCCAGGAAAAGAGTGAA+CGG + chr4_1:66816487-66816506 None:intergenic 40.0%
TTTCCTGGATTCAATGCTGA+AGG - chr4_1:66816495-66816514 Msa0565930:intron 40.0%
! ATTCCTTCAGCATTGAATCC+AGG + chr4_1:66816501-66816520 None:intergenic 40.0%
GGGACATAATGAATCCAAGA+TGG + chr4_1:66817088-66817107 None:intergenic 40.0%
GGATTCATTATGTCCCACAT+TGG - chr4_1:66817092-66817111 Msa0565930:intron 40.0%
! GTCCCACATTGGTTAGAATA+TGG - chr4_1:66817103-66817122 Msa0565930:intron 40.0%
CCTCTTATGCAAAACTTAGG+AGG + chr4_1:66817384-66817403 None:intergenic 40.0%
! CCTCCTAAGTTTTGCATAAG+AGG - chr4_1:66817381-66817400 Msa0565930:intron 40.0%
!!! AACACCTCCTAAGTTTTGGA+GGG - chr4_1:66817545-66817564 Msa0565930:intron 40.0%
CCTCTTATGCAAAACTTAGG+AGG + chr4_1:66817384-66817403 None:intergenic 40.0%
! CCTCCTAAGTTTTGCATAAG+AGG - chr4_1:66817381-66817400 Msa0565930:intron 40.0%
! TAAAGCATCATTTAGGGGAG+GGG - chr4_1:66817681-66817700 Msa0565930:CDS 40.0%
TTACATCCTACTCCTAACAG+TGG - chr4_1:66817712-66817731 Msa0565930:intron 40.0%
!!! CCCCTTGAACCATCATTTTT+TGG - chr4_1:66817785-66817804 Msa0565930:intron 40.0%
AGTTCATATTTGTAGAGGCG+AGG - chr4_1:66817842-66817861 Msa0565930:CDS 40.0%
GTTCATATTTGTAGAGGCGA+GGG - chr4_1:66817843-66817862 Msa0565930:CDS 40.0%
GCAATTGAAGCTTCTTTCAG+GGG - chr4_1:66817870-66817889 Msa0565930:CDS 40.0%
TATTGACATTAGAGCGGAAG+GGG - chr4_1:66817419-66817438 Msa0565930:CDS 40.0%
! TAAAGCATCATTTAGGGGAG+GGG - chr4_1:66817681-66817700 Msa0565930:CDS 40.0%
!! CTTGAAGAAGCTCTGAATTC+TGG - chr4_1:66818231-66818250 Msa0565930:intron 40.0%
ATCCTGACCTTGCTAACTTA+AGG - chr4_1:66818361-66818380 Msa0565930:CDS 40.0%
TCCTGACCTTGCTAACTTAA+GGG - chr4_1:66818362-66818381 Msa0565930:CDS 40.0%
!! CAATAATGGATCGAATTCCG+GGG + chr4_1:66818391-66818410 None:intergenic 40.0%
GCTTTCTTGTGTCCATACAA+AGG + chr4_1:66818522-66818541 None:intergenic 40.0%
TCTATGTCTACCACCACTAG+TGG - chr4_1:66814737-66814756 Msa0565930:three_prime_UTR 45.0%
!! TTGCTTGGAGTTGATTTGGG+TGG + chr4_1:66814795-66814814 None:intergenic 45.0%
! GCCAAAACCGTTCCTTTTTG+TGG - chr4_1:66814886-66814905 Msa0565930:three_prime_UTR 45.0%
GAAGAGAGTGAAAAGGGTGA+AGG - chr4_1:66814947-66814966 Msa0565930:three_prime_UTR 45.0%
ATTGATGCTATTGCACCTGG+TGG - chr4_1:66815058-66815077 Msa0565930:CDS 45.0%
! GTGATAAAGTACTTGCCACC+AGG - chr4_1:66815113-66815132 Msa0565930:CDS 45.0%
ATTTGGCCAGCTGCAGAATA+TGG - chr4_1:66815581-66815600 Msa0565930:intron 45.0%
GCGACTAGACTAGGATTTGA+GGG + chr4_1:66815715-66815734 None:intergenic 45.0%
AGCGACTAGACTAGGATTTG+AGG + chr4_1:66815716-66815735 None:intergenic 45.0%
CACAAACAAGCGACTAGACT+AGG + chr4_1:66815724-66815743 None:intergenic 45.0%
AGGAGATCATTAGAGCTGAG+AGG - chr4_1:66815818-66815837 Msa0565930:intron 45.0%
ATTAGAGCTGAGAGGAACTC+TGG - chr4_1:66815826-66815845 Msa0565930:intron 45.0%
GTTGTAACCCCACATCACAT+GGG + chr4_1:66815960-66815979 None:intergenic 45.0%
GAGTGAACGGTAAGGATATC+AGG + chr4_1:66816474-66816493 None:intergenic 45.0%
CAGGAAAAGAGTGAACGGTA+AGG + chr4_1:66816482-66816501 None:intergenic 45.0%
! CTTACCGTTCACTCTTTTCC+TGG - chr4_1:66816480-66816499 Msa0565930:intron 45.0%
GCGCTTCACTACTTCAACAT+TGG - chr4_1:66816673-66816692 Msa0565930:intron 45.0%
AAAGCCATGTTCCATCACCT+TGG + chr4_1:66817212-66817231 None:intergenic 45.0%
!! AAGGTGATGGAACATGGCTT+TGG - chr4_1:66817211-66817230 Msa0565930:intron 45.0%
!! GAACATGGCTTTGGCTTAAC+AGG - chr4_1:66817220-66817239 Msa0565930:intron 45.0%
!! ATGGCTTTGGCTTAACAGGT+TGG - chr4_1:66817224-66817243 Msa0565930:intron 45.0%
!! TGGCTTTGGCTTAACAGGTT+GGG - chr4_1:66817225-66817244 Msa0565930:intron 45.0%
! AGCGAACACCTCCTAAGTTT+TGG - chr4_1:66817373-66817392 Msa0565930:intron 45.0%
!! GAACACCTCCTAAGTTTTGG+AGG - chr4_1:66817544-66817563 Msa0565930:intron 45.0%
CATACCCTCCAAAACTTAGG+AGG + chr4_1:66817552-66817571 None:intergenic 45.0%
!!! CTCCTAAGTTTTGGAGGGTA+TGG - chr4_1:66817550-66817569 Msa0565930:intron 45.0%
ATCCTACTCCTAACAGTGGA+GGG - chr4_1:66817716-66817735 Msa0565930:intron 45.0%
CACGGAGAAATCAAATGTGG+TGG + chr4_1:66818587-66818606 None:intergenic 45.0%
!! AAAAATATCTTATAAAAAAA+GGG + chr4_1:66815934-66815953 None:intergenic 5.0%
!! AAAAAATATCTTATAAAAAA+AGG + chr4_1:66815935-66815954 None:intergenic 5.0%
!!! TTTTAGAAAATTTTAAAAAT+TGG - chr4_1:66818014-66818033 Msa0565930:intron 5.0%
TTGTGGTAAGCCATGCTCCA+AGG - chr4_1:66814644-66814663 Msa0565930:three_prime_UTR 50.0%
AGAGTAGTGACCACTAGTGG+TGG + chr4_1:66814750-66814769 None:intergenic 50.0%
TGCAGAGTAGTGACCACTAG+TGG + chr4_1:66814753-66814772 None:intergenic 50.0%
! ACCTGGTGGATCAGCTGATA+AGG - chr4_1:66815072-66815091 Msa0565930:CDS 50.0%
AAGGCTGGTGTCTTCACTGT+TGG - chr4_1:66815091-66815110 Msa0565930:CDS 50.0%
GTCCTTCCATATTCTGCAGC+TGG + chr4_1:66815590-66815609 None:intergenic 50.0%
GGTTGTAACCCCACATCACA+TGG + chr4_1:66815961-66815980 None:intergenic 50.0%
! ACTGCTGCTTCATCAGGTTC+TGG + chr4_1:66816575-66816594 None:intergenic 50.0%
! TTTGGCTTAACAGGTTGGGC+TGG - chr4_1:66817229-66817248 Msa0565930:intron 50.0%
! GTCTGCTCTTAACTTGGAGC+GGG + chr4_1:66817276-66817295 None:intergenic 50.0%
! GGTCTGCTCTTAACTTGGAG+CGG + chr4_1:66817277-66817296 None:intergenic 50.0%
CAAGTTAAGAGCAGACCCGT+GGG - chr4_1:66817280-66817299 Msa0565930:intron 50.0%
CGCCATACCCTCCAAAACTT+AGG + chr4_1:66817555-66817574 None:intergenic 50.0%
CATCCTACTCCTAACAGTGG+AGG - chr4_1:66817715-66817734 Msa0565930:intron 50.0%
ATCCCTCCACTGTTAGGAGT+AGG + chr4_1:66817721-66817740 None:intergenic 50.0%
TGAAGCTTCTTTCAGGGGAG+CGG - chr4_1:66817875-66817894 Msa0565930:CDS 50.0%
GCCCTTAAGTTAGCAAGGTC+AGG + chr4_1:66818366-66818385 None:intergenic 50.0%
GGGATGCCCTTAAGTTAGCA+AGG + chr4_1:66818371-66818390 None:intergenic 50.0%
!! TGCTAACTTAAGGGCATCCC+CGG - chr4_1:66818371-66818390 Msa0565930:CDS 50.0%
GCCTTATCAGCTGATCCACC+AGG + chr4_1:66815076-66815095 None:intergenic 55.0%
GGTGGATCAGCTGATAAGGC+TGG - chr4_1:66815076-66815095 Msa0565930:CDS 55.0%
GGCCAGCTGCAGAATATGGA+AGG - chr4_1:66815585-66815604 Msa0565930:intron 55.0%
GCTCACGGATCCATGAACCA+TGG - chr4_1:66815750-66815769 Msa0565930:intron 55.0%
! CTTGCGACTGCTGCTTCATC+AGG + chr4_1:66816581-66816600 None:intergenic 55.0%
!! GGCACCAAGGTGATGGAACA+TGG - chr4_1:66817205-66817224 Msa0565930:intron 55.0%
CCACGGGTCTGCTCTTAACT+TGG + chr4_1:66817282-66817301 None:intergenic 55.0%
CCAAGTTAAGAGCAGACCCG+TGG - chr4_1:66817279-66817298 Msa0565930:intron 55.0%
ATGCCTTCGCTCAAGTCCCA+CGG + chr4_1:66817299-66817318 None:intergenic 55.0%
! AGCGAAGGCATGAGTCCTGT+GGG - chr4_1:66817308-66817327 Msa0565930:intron 55.0%
GAGTCCTGTGGGTCTTAGAC+AGG - chr4_1:66817319-66817338 Msa0565930:intron 55.0%
TCCTGTGGGTCTTAGACAGG+AGG - chr4_1:66817322-66817341 Msa0565930:intron 55.0%
CCTGTGGGTCTTAGACAGGA+GGG - chr4_1:66817323-66817342 Msa0565930:intron 55.0%
GGGTCTTAGACAGGAGGGTA+TGG - chr4_1:66817328-66817347 Msa0565930:intron 55.0%
GACATTAGAGCGGAAGGGAG+CGG - chr4_1:66817423-66817442 Msa0565930:CDS 55.0%
ATGCCTTCGCTCAAGTCCCA+CGG + chr4_1:66817299-66817318 None:intergenic 55.0%
! AGCGAAGGCATGAGTCCTGT+GGG - chr4_1:66817308-66817327 Msa0565930:intron 55.0%
GAGTCCTGTGGGTCTTAGAC+AGG - chr4_1:66817319-66817338 Msa0565930:intron 55.0%
TCCTGTGGGTCTTAGACAGG+AGG - chr4_1:66817322-66817341 Msa0565930:intron 55.0%
CCTGTGGGTCTTAGACAGGA+GGG - chr4_1:66817323-66817342 Msa0565930:intron 55.0%
GGGTCTTAGACAGGAGGGTA+TGG - chr4_1:66817328-66817347 Msa0565930:intron 55.0%
!!! GTTTTGGAGGGTATGGCGTG+AGG - chr4_1:66817557-66817576 Msa0565930:intron 55.0%
GACATTAGAGCGGAAGGGAG+CGG - chr4_1:66817423-66817442 Msa0565930:CDS 55.0%
CCTGTGATCCCTCCACTGTT+AGG + chr4_1:66817727-66817746 None:intergenic 55.0%
CCTAACAGTGGAGGGATCAC+AGG - chr4_1:66817724-66817743 Msa0565930:intron 55.0%
! ACTCACCAGGTGTTGTGGAC+TGG + chr4_1:66817761-66817780 None:intergenic 55.0%
! GCTAGACTCACCAGGTGTTG+TGG + chr4_1:66817766-66817785 None:intergenic 55.0%
TTCAAGGGGCTAGACTCACC+AGG + chr4_1:66817774-66817793 None:intergenic 55.0%
!! TCACCTTGGTGCCCCCACTT+GGG + chr4_1:66817198-66817217 None:intergenic 60.0%
!! ATCACCTTGGTGCCCCCACT+TGG + chr4_1:66817199-66817218 None:intergenic 60.0%
!! AAGTGGGGGCACCAAGGTGA+TGG - chr4_1:66817198-66817217 Msa0565930:intron 60.0%
! GGCTTAACAGGTTGGGCTGG+TGG - chr4_1:66817232-66817251 Msa0565930:intron 60.0%
! GCTCTTAACTTGGAGCGGGC+AGG + chr4_1:66817272-66817291 None:intergenic 60.0%
TGCCTTCGCTCAAGTCCCAC+GGG + chr4_1:66817298-66817317 None:intergenic 60.0%
! GAGCGAAGGCATGAGTCCTG+TGG - chr4_1:66817307-66817326 Msa0565930:intron 60.0%
! CCCTCCTGTCTAAGACCCAC+AGG + chr4_1:66817326-66817345 None:intergenic 60.0%
! AGACAGGAGGGTATGGCGTG+AGG - chr4_1:66817335-66817354 Msa0565930:intron 60.0%
TTAGAGCGGAAGGGAGCGGA+AGG - chr4_1:66817427-66817446 Msa0565930:CDS 60.0%
TAGAGCGGAAGGGAGCGGAA+GGG - chr4_1:66817428-66817447 Msa0565930:CDS 60.0%
TGCCTTCGCTCAAGTCCCAC+GGG + chr4_1:66817298-66817317 None:intergenic 60.0%
! GAGCGAAGGCATGAGTCCTG+TGG - chr4_1:66817307-66817326 Msa0565930:intron 60.0%
! CCCTCCTGTCTAAGACCCAC+AGG + chr4_1:66817326-66817345 None:intergenic 60.0%
! AGACAGGAGGGTATGGCGTG+AGG - chr4_1:66817335-66817354 Msa0565930:intron 60.0%
TTAGAGCGGAAGGGAGCGGA+AGG - chr4_1:66817427-66817446 Msa0565930:CDS 60.0%
TAGAGCGGAAGGGAGCGGAA+GGG - chr4_1:66817428-66817447 Msa0565930:CDS 60.0%
!! GTTGTGGACTGGTGGTGTGG+TGG + chr4_1:66817750-66817769 None:intergenic 60.0%
!! GGTGTTGTGGACTGGTGGTG+TGG + chr4_1:66817753-66817772 None:intergenic 60.0%
CACCACCAGTCCACAACACC+TGG - chr4_1:66817753-66817772 Msa0565930:intron 60.0%
!! CACCAGGTGTTGTGGACTGG+TGG + chr4_1:66817758-66817777 None:intergenic 60.0%
GCTCGGCGACAGTACCAGCA+TGG + chr4_1:66817155-66817174 None:intergenic 65.0%
TGCTGGTACTGTCGCCGAGC+TGG - chr4_1:66817155-66817174 Msa0565930:intron 65.0%
GCTGGTACTGTCGCCGAGCT+GGG - chr4_1:66817156-66817175 Msa0565930:intron 65.0%
CAAGCCGGCGTTACCCAGCT+CGG + chr4_1:66817172-66817191 None:intergenic 65.0%
!! ACGCCGGCTTGTGACCCAAG+TGG - chr4_1:66817181-66817200 Msa0565930:intron 65.0%
!! CGCCGGCTTGTGACCCAAGT+GGG - chr4_1:66817182-66817201 Msa0565930:intron 65.0%
!! GCCGGCTTGTGACCCAAGTG+GGG - chr4_1:66817183-66817202 Msa0565930:intron 65.0%
CCCCCACTTGGGTCACAAGC+CGG + chr4_1:66817187-66817206 None:intergenic 65.0%
! CCGGCTTGTGACCCAAGTGG+GGG - chr4_1:66817184-66817203 Msa0565930:intron 65.0%
!! TGACCCAAGTGGGGGCACCA+AGG - chr4_1:66817192-66817211 Msa0565930:intron 65.0%
GGCTGGTGGTTGCACCATGC+TGG - chr4_1:66817246-66817265 Msa0565930:intron 65.0%
GACCCGTGGGACTTGAGCGA+AGG - chr4_1:66817293-66817312 Msa0565930:intron 65.0%
! AGGAGGGTATGGCGTGAGGC+TGG - chr4_1:66817339-66817358 Msa0565930:intron 65.0%
AGAGCGGAAGGGAGCGGAAG+GGG - chr4_1:66817429-66817448 Msa0565930:CDS 65.0%
AGGGGATGTGAGCAGACCCG+TGG - chr4_1:66817447-66817466 Msa0565930:CDS 65.0%
GGGGATGTGAGCAGACCCGT+GGG - chr4_1:66817448-66817467 Msa0565930:CDS 65.0%
GACCCGTGGGACTTGAGCGA+AGG - chr4_1:66817293-66817312 Msa0565930:intron 65.0%
! AGGAGGGTATGGCGTGAGGC+TGG - chr4_1:66817339-66817358 Msa0565930:intron 65.0%
! TGGAGGGTATGGCGTGAGGC+TGG - chr4_1:66817561-66817580 Msa0565930:intron 65.0%
AGAGCGGAAGGGAGCGGAAG+GGG - chr4_1:66817429-66817448 Msa0565930:CDS 65.0%
GTCGCCGAGCTGGGTAACGC+CGG - chr4_1:66817165-66817184 Msa0565930:intron 70.0%
TTGGAGCGGGCAGGCCAGCA+TGG + chr4_1:66817263-66817282 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 66814595 66818893 66814595 ID=Msa0565930;Name=Msa0565930
chr4_1 mRNA 66814595 66818893 66814595 ID=Msa0565930-mRNA-1;Parent=Msa0565930;Name=Msa0565930-mRNA-1;_AED=0.33;_eAED=0.33;_QI=133|1|1|1|1|1|7|402|336
chr4_1 exon 66814595 66815140 66814595 ID=Msa0565930-mRNA-1:exon:21805;Parent=Msa0565930-mRNA-1
chr4_1 exon 66815219 66815278 66815219 ID=Msa0565930-mRNA-1:exon:21804;Parent=Msa0565930-mRNA-1
chr4_1 exon 66816851 66816971 66816851 ID=Msa0565930-mRNA-1:exon:21803;Parent=Msa0565930-mRNA-1
chr4_1 exon 66817399 66817475 66817399 ID=Msa0565930-mRNA-1:exon:21802;Parent=Msa0565930-mRNA-1
chr4_1 exon 66817609 66817703 66817609 ID=Msa0565930-mRNA-1:exon:21801;Parent=Msa0565930-mRNA-1
chr4_1 exon 66817820 66817926 66817820 ID=Msa0565930-mRNA-1:exon:21800;Parent=Msa0565930-mRNA-1
chr4_1 exon 66818354 66818893 66818354 ID=Msa0565930-mRNA-1:exon:21799;Parent=Msa0565930-mRNA-1
chr4_1 five_prime_UTR 66818761 66818893 66818761 ID=Msa0565930-mRNA-1:five_prime_utr;Parent=Msa0565930-mRNA-1
chr4_1 CDS 66818354 66818760 66818354 ID=Msa0565930-mRNA-1:cds;Parent=Msa0565930-mRNA-1
chr4_1 CDS 66817820 66817926 66817820 ID=Msa0565930-mRNA-1:cds;Parent=Msa0565930-mRNA-1
chr4_1 CDS 66817609 66817703 66817609 ID=Msa0565930-mRNA-1:cds;Parent=Msa0565930-mRNA-1
chr4_1 CDS 66817399 66817475 66817399 ID=Msa0565930-mRNA-1:cds;Parent=Msa0565930-mRNA-1
chr4_1 CDS 66816851 66816971 66816851 ID=Msa0565930-mRNA-1:cds;Parent=Msa0565930-mRNA-1
chr4_1 CDS 66815219 66815278 66815219 ID=Msa0565930-mRNA-1:cds;Parent=Msa0565930-mRNA-1
chr4_1 CDS 66814997 66815140 66814997 ID=Msa0565930-mRNA-1:cds;Parent=Msa0565930-mRNA-1
chr4_1 three_prime_UTR 66814595 66814996 66814595 ID=Msa0565930-mRNA-1:three_prime_utr;Parent=Msa0565930-mRNA-1
Gene Sequence

>Msa0565930

ATGTCATTATCTATGTCTACCACCACTAGTGGTCACTACTCTGCACTTTCATTGCCAACAAGAACCACCCAAATCAACTCCAAGCAAAACCCAACTCATTATTTTCCCATTACCAAGTTGATTTCTTCCAAAAACCACTCATTTTCCAATACACTTTTGCCAAAACCGTTCCTTTTTGTGGTTAAAGCTTCATCTGAAGTGGGTTCAGATGCATCCAAAGAAGAGAGTGAAAAGGGTGAAGGAGAAAAAGAGCCATATGAAGAATACGAGGTAGAGATTGATCAGCCTTATGGAATCAAATTTGTAAAAGGAAGAGATGGTGGAACTTACATTGATGCTATTGCACCTGGTGGATCAGCTGATAAGGCTGGTGTCTTCACTGTTGGTGATAAAGTACTTGCCACCAGTGCTGTTTTTGGGACTGAAATTTGGCCAGCTGCAGAATATGGAAGGACAATGTACACAATTCGCCAAAGAATTGGACCGTTACTCATGAGAATGCAGAAGAGATATGGAAAGATAGAAACTGGTGGTGATTTAACTGAAAAGGAGATCATTAGAGCTGAGAGGAACTCTGGTGTAGTCAGTAACAAATTGAGGGAAATTCAAATGCAAAACTACCTAAGGAAAAAAGAAGTGAAAGAGGGTCGGGAAAATGATTTGAGAGAAGGCTTATTACTATACAGGAATGCTAAATATGAGGAAGCACTAGAGAAATTTGAGTCTGTTCTGGGATCAAAGCCAGAACCTGATGAAGCAGCAGTCGCAAGCTATAACGTTGCTTGTTGTTACTCTAAGCTAAACCAGATTCAAGCTGCACTTTCAACACTTGAAGAAGCTCTGAATTCTGGTTTTGAAGACTTCAAGAGAATCAGAACTGATCCTGACCTTGCTAACTTAAGGGCATCCCCGGAATTCGATCCATTATTGAAAAGATTTGATGAATCATTTATCAATGAGAGCGCCATCAATGCCATCAAATCAATATTTGGAATATTTGATAAGAAATAA

Protein sequence

>Msa0565930

MSLSMSTTTSGHYSALSLPTRTTQINSKQNPTHYFPITKLISSKNHSFSNTLLPKPFLFVVKASSEVGSDASKEESEKGEGEKEPYEEYEVEIDQPYGIKFVKGRDGGTYIDAIAPGGSADKAGVFTVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMRMQKRYGKIETGGDLTEKEIIRAERNSGVVSNKLREIQMQNYLRKKEVKEGRENDLREGLLLYRNAKYEEALEKFESVLGSKPEPDEAAVASYNVACCYSKLNQIQAALSTLEEALNSGFEDFKRIRTDPDLANLRASPEFDPLLKRFDESFINESAINAIKSIFGIFDKK*