AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0065190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0065190 MtrunA17_Chr1g0168471 96.850 127 4 0 1 127 1 127 3.12e-89 254
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0065190 AT2G05620.2 75.940 133 23 4 2 127 3 133 9.08e-66 196
Msa0065190 AT2G05620.1 75.940 133 23 4 2 127 3 133 9.08e-66 196

Find 52 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAACGTTATAAAATTTA+AGG 0.148269 1_2:-27084189 Msa0065190:three_prime_UTR
TCATCAATGGTTCACATAAA+AGG 0.199695 1_2:+27084098 None:intergenic
AGAAATTGAAGTAGCCATTT+TGG 0.211486 1_2:+27085526 None:intergenic
ATCAAGGAAATATGTTAAAC+TGG 0.280664 1_2:+27084063 None:intergenic
ATATTTCCTTGATTCCTCTT+TGG 0.290466 1_2:-27084053 Msa0065190:three_prime_UTR
AAACGTTTCAATCAGCTTAG+AGG 0.319386 1_2:-27085290 Msa0065190:CDS
TCATTAACATTCTTCATCAT+AGG 0.355579 1_2:+27085368 None:intergenic
AAACATCATAGTAACCAAAA+TGG 0.374163 1_2:-27085540 Msa0065190:exon
ACCAGTGGTTTAGATGTATT+AGG 0.380542 1_2:+27085696 None:intergenic
ACTGAATTCTGCAAATCAAT+AGG 0.397917 1_2:-27084459 Msa0065190:CDS
GCTACTTCAATTTCTGCAAC+AGG 0.401591 1_2:-27085518 Msa0065190:CDS
AACAGAGACAAGGGCTGATT+AGG 0.411490 1_2:-27084425 Msa0065190:CDS
TGTGTTGGTTCATCATTCTA+TGG 0.416628 1_2:-27085494 Msa0065190:CDS
GCTTCAATGCATGGTTGTAA+TGG 0.427377 1_2:+27085622 None:intergenic
TTACGAGTAACCACAACAAT+TGG 0.430918 1_2:+27085326 None:intergenic
AGCCATTGCTTTACACTCTC+AGG 0.432190 1_2:-27085264 Msa0065190:intron
GTTCATCATTCTATGGAAGC+TGG 0.445752 1_2:-27085487 Msa0065190:CDS
GTTTCTTCGCAAGTTCGTAT+TGG 0.470806 1_2:-27085419 Msa0065190:CDS
GTGGTTACTCGTAATATTGT+TGG 0.474864 1_2:-27085317 Msa0065190:CDS
TAATATTTGTATGTGAAGGA+AGG 0.478965 1_2:+27085649 None:intergenic
ATTTCTGCAACAGGTTGTGT+TGG 0.484427 1_2:-27085509 Msa0065190:CDS
ATCATAGGTTGCAACCTCAC+TGG 0.491055 1_2:+27085383 None:intergenic
TTCATCATTCTATGGAAGCT+GGG 0.491238 1_2:-27085486 Msa0065190:CDS
ATTAGGTTGGCTAAGAAGAA+TGG 0.501313 1_2:-27084408 Msa0065190:CDS
ATGATGAAGAATGTTAATGA+AGG 0.502442 1_2:-27085365 Msa0065190:CDS
AACACACCAAAGAGGAATCA+AGG 0.503447 1_2:+27084047 None:intergenic
AAAAGATTAGCTTCAATGCA+TGG 0.504944 1_2:+27085613 None:intergenic
ATGGTTCACATAAAAGGCTA+TGG 0.508728 1_2:+27084104 None:intergenic
GACATTGTAATTACAAAATG+TGG 0.509248 1_2:+27084343 None:intergenic
TCCTAATACATCTAAACCAC+TGG 0.519171 1_2:-27085697 Msa0065190:five_prime_UTR
AGCTGGGGAACATCTATAGT+TGG 0.521344 1_2:-27085470 Msa0065190:CDS
TATATTTGCTCCAATTGTTG+TGG 0.534523 1_2:-27085336 Msa0065190:CDS
AATATTTGTATGTGAAGGAA+GGG 0.541782 1_2:+27085650 None:intergenic
AGAAATAGATCAATGTTACT+TGG 0.544759 1_2:-27084153 Msa0065190:three_prime_UTR
AAGAAGAATGGAGAATGGCT+TGG 0.545873 1_2:-27084396 Msa0065190:CDS
TTGACAGCAGAATGTAAACT+AGG 0.551181 1_2:-27084284 Msa0065190:three_prime_UTR
TTTATAATATTTGTATGTGA+AGG 0.558690 1_2:+27085645 None:intergenic
AAGAATGTTAATGAAGGGAA+AGG 0.566696 1_2:-27085359 Msa0065190:CDS
GGTGTAAATTGGAGAACCAG+TGG 0.587293 1_2:+27085681 None:intergenic
GAGACAAGGGCTGATTAGGT+TGG 0.587941 1_2:-27084421 Msa0065190:CDS
TGGTGAAGATTACAGCATGT+TGG 0.600796 1_2:-27085450 Msa0065190:CDS
TGGCTAAGAAGAATGGAGAA+TGG 0.601122 1_2:-27084401 Msa0065190:CDS
TGATGAAGAATGTTAATGAA+GGG 0.601637 1_2:-27085364 Msa0065190:CDS
CACCTGAGAGTGTAAAGCAA+TGG 0.607087 1_2:+27085262 None:intergenic
TCATCATTCTATGGAAGCTG+GGG 0.629743 1_2:-27085485 Msa0065190:CDS
TCAAGGAAATATGTTAAACT+GGG 0.633217 1_2:+27084064 None:intergenic
TATGTGAATGTAAAAGAACA+AGG 0.635041 1_2:+27085569 None:intergenic
GCAGATGCAAAACAGAGACA+AGG 0.641927 1_2:-27084435 Msa0065190:CDS
CAGATGCAAAACAGAGACAA+GGG 0.659781 1_2:-27084434 Msa0065190:CDS
GAAGAGTTAGTAAGCCAGTG+AGG 0.661265 1_2:-27085397 Msa0065190:CDS
CGGGAGGTAACACACCAAAG+AGG 0.693548 1_2:+27084039 None:intergenic
GAACTCCGGATTATCACGGG+AGG 0.757287 1_2:+27084023 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAATGTAATTTATATAT+AGG - chr1_2:27084791-27084810 Msa0065190:intron 10.0%
!! TTTATTTGAATAAAATATGA+TGG - chr1_2:27085199-27085218 Msa0065190:intron 10.0%
!! GAAAAATGTAATTTATATAT+AGG - chr1_2:27084791-27084810 Msa0065190:intron 10.0%
!! TTTATTTGAATAAAATATGA+TGG - chr1_2:27085199-27085218 Msa0065190:intron 10.0%
!! TTTATAATATTTGTATGTGA+AGG + chr1_2:27084098-27084117 None:intergenic 15.0%
!!! GATTTGAAATCTTAATAATA+AGG - chr1_2:27085017-27085036 Msa0065190:intron 15.0%
!! ATGAAACGTTATAAAATTTA+AGG - chr1_2:27085551-27085570 Msa0065190:five_prime_UTR 15.0%
!! TTTATAATATTTGTATGTGA+AGG + chr1_2:27084098-27084117 None:intergenic 15.0%
!!! GATTTGAAATCTTAATAATA+AGG - chr1_2:27085017-27085036 Msa0065190:intron 15.0%
!! ATGAAACGTTATAAAATTTA+AGG - chr1_2:27085551-27085570 Msa0065190:five_prime_UTR 15.0%
!!! ACTTGAATTATGATTTTATG+TGG - chr1_2:27084676-27084695 Msa0065190:intron 20.0%
!! TTCAAGTAGAATTTATCAAA+GGG - chr1_2:27084758-27084777 Msa0065190:intron 20.0%
!!! CTTTTATTATCCTTTCAAAA+AGG + chr1_2:27085051-27085070 None:intergenic 20.0%
!!! CTTTTTGAAAGGATAATAAA+AGG - chr1_2:27085049-27085068 Msa0065190:intron 20.0%
!! GATAATTAGTAGTTTCTAAT+TGG + chr1_2:27085116-27085135 None:intergenic 20.0%
!!! TTTCATATTTTGAAATCTGT+AGG - chr1_2:27085253-27085272 Msa0065190:intron 20.0%
!! TTTCATGTTTAAAAACTTGA+TGG - chr1_2:27085426-27085445 Msa0065190:CDS 20.0%
!!! ACTTGAATTATGATTTTATG+TGG - chr1_2:27084676-27084695 Msa0065190:intron 20.0%
!! TTCAAGTAGAATTTATCAAA+GGG - chr1_2:27084758-27084777 Msa0065190:intron 20.0%
!!! CTTTTATTATCCTTTCAAAA+AGG + chr1_2:27085051-27085070 None:intergenic 20.0%
!!! CTTTTTGAAAGGATAATAAA+AGG - chr1_2:27085049-27085068 Msa0065190:intron 20.0%
!! GATAATTAGTAGTTTCTAAT+TGG + chr1_2:27085116-27085135 None:intergenic 20.0%
!!! TTTCATATTTTGAAATCTGT+AGG - chr1_2:27085253-27085272 Msa0065190:intron 20.0%
!! TTTCATGTTTAAAAACTTGA+TGG - chr1_2:27085426-27085445 Msa0065190:CDS 20.0%
! AATATTTGTATGTGAAGGAA+GGG + chr1_2:27084093-27084112 None:intergenic 25.0%
! TAATATTTGTATGTGAAGGA+AGG + chr1_2:27084094-27084113 None:intergenic 25.0%
! TATGTGAATGTAAAAGAACA+AGG + chr1_2:27084174-27084193 None:intergenic 25.0%
! AAACATCATAGTAACCAAAA+TGG - chr1_2:27084200-27084219 Msa0065190:three_prime_UTR 25.0%
! TCATTAACATTCTTCATCAT+AGG + chr1_2:27084375-27084394 None:intergenic 25.0%
! ATGATGAAGAATGTTAATGA+AGG - chr1_2:27084375-27084394 Msa0065190:exon 25.0%
! TGATGAAGAATGTTAATGAA+GGG - chr1_2:27084376-27084395 Msa0065190:exon 25.0%
!!! GATATTTTAGTGTTACAACT+AGG - chr1_2:27084628-27084647 Msa0065190:intron 25.0%
! GTTCAAGTAGAATTTATCAA+AGG - chr1_2:27084757-27084776 Msa0065190:intron 25.0%
! TAGAATTTATCAAAGGGAAA+TGG - chr1_2:27084764-27084783 Msa0065190:intron 25.0%
! AGAATTTATCAAAGGGAAAT+GGG - chr1_2:27084765-27084784 Msa0065190:intron 25.0%
!! TCAAAAACCTTGATTTTATC+TGG - chr1_2:27084972-27084991 Msa0065190:intron 25.0%
! AAAGGATAATAAAAGGAAGA+TGG - chr1_2:27085056-27085075 Msa0065190:intron 25.0%
! AAGGATAATAAAAGGAAGAT+GGG - chr1_2:27085057-27085076 Msa0065190:intron 25.0%
! AGCAATTGTTTCAAAATCTT+TGG - chr1_2:27085169-27085188 Msa0065190:intron 25.0%
! ATTGTTTCAAAATCTTTGGT+TGG - chr1_2:27085173-27085192 Msa0065190:intron 25.0%
! GACATTGTAATTACAAAATG+TGG + chr1_2:27085400-27085419 None:intergenic 25.0%
! AGAAATAGATCAATGTTACT+TGG - chr1_2:27085587-27085606 Msa0065190:five_prime_UTR 25.0%
! TCAAGGAAATATGTTAAACT+GGG + chr1_2:27085679-27085698 None:intergenic 25.0%
! ATCAAGGAAATATGTTAAAC+TGG + chr1_2:27085680-27085699 None:intergenic 25.0%
! AATATTTGTATGTGAAGGAA+GGG + chr1_2:27084093-27084112 None:intergenic 25.0%
! TAATATTTGTATGTGAAGGA+AGG + chr1_2:27084094-27084113 None:intergenic 25.0%
! TATGTGAATGTAAAAGAACA+AGG + chr1_2:27084174-27084193 None:intergenic 25.0%
! AAACATCATAGTAACCAAAA+TGG - chr1_2:27084200-27084219 Msa0065190:three_prime_UTR 25.0%
! TCATTAACATTCTTCATCAT+AGG + chr1_2:27084375-27084394 None:intergenic 25.0%
! ATGATGAAGAATGTTAATGA+AGG - chr1_2:27084375-27084394 Msa0065190:exon 25.0%
! TGATGAAGAATGTTAATGAA+GGG - chr1_2:27084376-27084395 Msa0065190:exon 25.0%
!!! GATATTTTAGTGTTACAACT+AGG - chr1_2:27084628-27084647 Msa0065190:intron 25.0%
! GTTCAAGTAGAATTTATCAA+AGG - chr1_2:27084757-27084776 Msa0065190:intron 25.0%
! TAGAATTTATCAAAGGGAAA+TGG - chr1_2:27084764-27084783 Msa0065190:intron 25.0%
! AGAATTTATCAAAGGGAAAT+GGG - chr1_2:27084765-27084784 Msa0065190:intron 25.0%
!! TCAAAAACCTTGATTTTATC+TGG - chr1_2:27084972-27084991 Msa0065190:intron 25.0%
! AAAGGATAATAAAAGGAAGA+TGG - chr1_2:27085056-27085075 Msa0065190:intron 25.0%
! AAGGATAATAAAAGGAAGAT+GGG - chr1_2:27085057-27085076 Msa0065190:intron 25.0%
! AGCAATTGTTTCAAAATCTT+TGG - chr1_2:27085169-27085188 Msa0065190:intron 25.0%
! ATTGTTTCAAAATCTTTGGT+TGG - chr1_2:27085173-27085192 Msa0065190:intron 25.0%
! GACATTGTAATTACAAAATG+TGG + chr1_2:27085400-27085419 None:intergenic 25.0%
! AGAAATAGATCAATGTTACT+TGG - chr1_2:27085587-27085606 Msa0065190:five_prime_UTR 25.0%
! TCAAGGAAATATGTTAAACT+GGG + chr1_2:27085679-27085698 None:intergenic 25.0%
! ATCAAGGAAATATGTTAAAC+TGG + chr1_2:27085680-27085699 None:intergenic 25.0%
!!! GGGATATTTTTGGTGTAAAT+TGG + chr1_2:27084073-27084092 None:intergenic 30.0%
!! AAAAGATTAGCTTCAATGCA+TGG + chr1_2:27084130-27084149 None:intergenic 30.0%
! AGAAATTGAAGTAGCCATTT+TGG + chr1_2:27084217-27084236 None:intergenic 30.0%
AAGAATGTTAATGAAGGGAA+AGG - chr1_2:27084381-27084400 Msa0065190:exon 30.0%
TATATTTGCTCCAATTGTTG+TGG - chr1_2:27084404-27084423 Msa0065190:CDS 30.0%
! TCTTTCTTGTTCATGTCTTT+TGG - chr1_2:27084584-27084603 Msa0065190:intron 30.0%
!!! CTTTTGGAATTTTGTTTGTG+AGG - chr1_2:27084600-27084619 Msa0065190:intron 30.0%
!! GAATTTTGTTTGTGAGGTAT+TGG - chr1_2:27084606-27084625 Msa0065190:intron 30.0%
! GGTTTCTTTGTTTCAAAGTT+TGG - chr1_2:27084697-27084716 Msa0065190:intron 30.0%
TCAAAGTTTGGTTAGATTGA+AGG - chr1_2:27084709-27084728 Msa0065190:intron 30.0%
ATTGAAGTAAATCAAAGTCG+TGG - chr1_2:27084848-27084867 Msa0065190:intron 30.0%
TGTAGAATTACAGTCAAATG+CGG - chr1_2:27084906-27084925 Msa0065190:intron 30.0%
! GGTTGAATTTCCTTTTTGAA+AGG - chr1_2:27085038-27085057 Msa0065190:intron 30.0%
ATGAGAGATTACGAATTATG+TGG - chr1_2:27085145-27085164 Msa0065190:intron 30.0%
ACTGAATTCTGCAAATCAAT+AGG - chr1_2:27085281-27085300 Msa0065190:CDS 30.0%
TCATCAATGGTTCACATAAA+AGG + chr1_2:27085645-27085664 None:intergenic 30.0%
!!! GGATCAACTTTTTTCATCAA+TGG + chr1_2:27085658-27085677 None:intergenic 30.0%
ATATTTCCTTGATTCCTCTT+TGG - chr1_2:27085687-27085706 Msa0065190:five_prime_UTR 30.0%
!!! GGGATATTTTTGGTGTAAAT+TGG + chr1_2:27084073-27084092 None:intergenic 30.0%
!! AAAAGATTAGCTTCAATGCA+TGG + chr1_2:27084130-27084149 None:intergenic 30.0%
! AGAAATTGAAGTAGCCATTT+TGG + chr1_2:27084217-27084236 None:intergenic 30.0%
AAGAATGTTAATGAAGGGAA+AGG - chr1_2:27084381-27084400 Msa0065190:exon 30.0%
TATATTTGCTCCAATTGTTG+TGG - chr1_2:27084404-27084423 Msa0065190:CDS 30.0%
! TCTTTCTTGTTCATGTCTTT+TGG - chr1_2:27084584-27084603 Msa0065190:intron 30.0%
!!! CTTTTGGAATTTTGTTTGTG+AGG - chr1_2:27084600-27084619 Msa0065190:intron 30.0%
!! GAATTTTGTTTGTGAGGTAT+TGG - chr1_2:27084606-27084625 Msa0065190:intron 30.0%
! GGTTTCTTTGTTTCAAAGTT+TGG - chr1_2:27084697-27084716 Msa0065190:intron 30.0%
TCAAAGTTTGGTTAGATTGA+AGG - chr1_2:27084709-27084728 Msa0065190:intron 30.0%
ATTGAAGTAAATCAAAGTCG+TGG - chr1_2:27084848-27084867 Msa0065190:intron 30.0%
TGTAGAATTACAGTCAAATG+CGG - chr1_2:27084906-27084925 Msa0065190:intron 30.0%
! GGTTGAATTTCCTTTTTGAA+AGG - chr1_2:27085038-27085057 Msa0065190:intron 30.0%
ATGAGAGATTACGAATTATG+TGG - chr1_2:27085145-27085164 Msa0065190:intron 30.0%
ACTGAATTCTGCAAATCAAT+AGG - chr1_2:27085281-27085300 Msa0065190:CDS 30.0%
TCATCAATGGTTCACATAAA+AGG + chr1_2:27085645-27085664 None:intergenic 30.0%
!!! GGATCAACTTTTTTCATCAA+TGG + chr1_2:27085658-27085677 None:intergenic 30.0%
ATATTTCCTTGATTCCTCTT+TGG - chr1_2:27085687-27085706 Msa0065190:five_prime_UTR 30.0%
TCCTAATACATCTAAACCAC+TGG - chr1_2:27084043-27084062 Msa0065190:three_prime_UTR 35.0%
ACCAGTGGTTTAGATGTATT+AGG + chr1_2:27084047-27084066 None:intergenic 35.0%
! TGTGAAGGAAGGGATATTTT+TGG + chr1_2:27084083-27084102 None:intergenic 35.0%
!! TGTGTTGGTTCATCATTCTA+TGG - chr1_2:27084246-27084265 Msa0065190:three_prime_UTR 35.0%
TTCATCATTCTATGGAAGCT+GGG - chr1_2:27084254-27084273 Msa0065190:three_prime_UTR 35.0%
TTACGAGTAACCACAACAAT+TGG + chr1_2:27084417-27084436 None:intergenic 35.0%
GTGGTTACTCGTAATATTGT+TGG - chr1_2:27084423-27084442 Msa0065190:CDS 35.0%
AAACGTTTCAATCAGCTTAG+AGG - chr1_2:27084450-27084469 Msa0065190:CDS 35.0%
GTGTAATAGGACTTCGAATA+TGG + chr1_2:27084941-27084960 None:intergenic 35.0%
GCACAAACCAGATAAAATCA+AGG + chr1_2:27084982-27085001 None:intergenic 35.0%
!! GATTTTATCTGGTTTGTGCT+TGG - chr1_2:27084983-27085002 Msa0065190:intron 35.0%
!! ATTAGGTTGGCTAAGAAGAA+TGG - chr1_2:27085332-27085351 Msa0065190:CDS 35.0%
TTGACAGCAGAATGTAAACT+AGG - chr1_2:27085456-27085475 Msa0065190:CDS 35.0%
ATGGTTCACATAAAAGGCTA+TGG + chr1_2:27085639-27085658 None:intergenic 35.0%
TCCTAATACATCTAAACCAC+TGG - chr1_2:27084043-27084062 Msa0065190:three_prime_UTR 35.0%
ACCAGTGGTTTAGATGTATT+AGG + chr1_2:27084047-27084066 None:intergenic 35.0%
! TGTGAAGGAAGGGATATTTT+TGG + chr1_2:27084083-27084102 None:intergenic 35.0%
!! TGTGTTGGTTCATCATTCTA+TGG - chr1_2:27084246-27084265 Msa0065190:three_prime_UTR 35.0%
TTCATCATTCTATGGAAGCT+GGG - chr1_2:27084254-27084273 Msa0065190:three_prime_UTR 35.0%
TTACGAGTAACCACAACAAT+TGG + chr1_2:27084417-27084436 None:intergenic 35.0%
GTGGTTACTCGTAATATTGT+TGG - chr1_2:27084423-27084442 Msa0065190:CDS 35.0%
AAACGTTTCAATCAGCTTAG+AGG - chr1_2:27084450-27084469 Msa0065190:CDS 35.0%
GTGTAATAGGACTTCGAATA+TGG + chr1_2:27084941-27084960 None:intergenic 35.0%
GCACAAACCAGATAAAATCA+AGG + chr1_2:27084982-27085001 None:intergenic 35.0%
!! GATTTTATCTGGTTTGTGCT+TGG - chr1_2:27084983-27085002 Msa0065190:intron 35.0%
!! ATTAGGTTGGCTAAGAAGAA+TGG - chr1_2:27085332-27085351 Msa0065190:CDS 35.0%
TTGACAGCAGAATGTAAACT+AGG - chr1_2:27085456-27085475 Msa0065190:CDS 35.0%
ATGGTTCACATAAAAGGCTA+TGG + chr1_2:27085639-27085658 None:intergenic 35.0%
GCTTCAATGCATGGTTGTAA+TGG + chr1_2:27084121-27084140 None:intergenic 40.0%
GCTACTTCAATTTCTGCAAC+AGG - chr1_2:27084222-27084241 Msa0065190:three_prime_UTR 40.0%
ATTTCTGCAACAGGTTGTGT+TGG - chr1_2:27084231-27084250 Msa0065190:three_prime_UTR 40.0%
GTTCATCATTCTATGGAAGC+TGG - chr1_2:27084253-27084272 Msa0065190:three_prime_UTR 40.0%
TCATCATTCTATGGAAGCTG+GGG - chr1_2:27084255-27084274 Msa0065190:three_prime_UTR 40.0%
TGGTGAAGATTACAGCATGT+TGG - chr1_2:27084290-27084309 Msa0065190:three_prime_UTR 40.0%
GTTTCTTCGCAAGTTCGTAT+TGG - chr1_2:27084321-27084340 Msa0065190:three_prime_UTR 40.0%
CAAAGTCGTGGTAATAGTCA+TGG - chr1_2:27084860-27084879 Msa0065190:intron 40.0%
GATGTCTCTACGAGTGTAAT+AGG + chr1_2:27084954-27084973 None:intergenic 40.0%
CAGATGCAAAACAGAGACAA+GGG - chr1_2:27085306-27085325 Msa0065190:CDS 40.0%
TGGCTAAGAAGAATGGAGAA+TGG - chr1_2:27085339-27085358 Msa0065190:CDS 40.0%
AAGAAGAATGGAGAATGGCT+TGG - chr1_2:27085344-27085363 Msa0065190:CDS 40.0%
AACACACCAAAGAGGAATCA+AGG + chr1_2:27085696-27085715 None:intergenic 40.0%
GCTTCAATGCATGGTTGTAA+TGG + chr1_2:27084121-27084140 None:intergenic 40.0%
GCTACTTCAATTTCTGCAAC+AGG - chr1_2:27084222-27084241 Msa0065190:three_prime_UTR 40.0%
ATTTCTGCAACAGGTTGTGT+TGG - chr1_2:27084231-27084250 Msa0065190:three_prime_UTR 40.0%
GTTCATCATTCTATGGAAGC+TGG - chr1_2:27084253-27084272 Msa0065190:three_prime_UTR 40.0%
TCATCATTCTATGGAAGCTG+GGG - chr1_2:27084255-27084274 Msa0065190:three_prime_UTR 40.0%
TGGTGAAGATTACAGCATGT+TGG - chr1_2:27084290-27084309 Msa0065190:three_prime_UTR 40.0%
GTTTCTTCGCAAGTTCGTAT+TGG - chr1_2:27084321-27084340 Msa0065190:three_prime_UTR 40.0%
CAAAGTCGTGGTAATAGTCA+TGG - chr1_2:27084860-27084879 Msa0065190:intron 40.0%
GATGTCTCTACGAGTGTAAT+AGG + chr1_2:27084954-27084973 None:intergenic 40.0%
CAGATGCAAAACAGAGACAA+GGG - chr1_2:27085306-27085325 Msa0065190:CDS 40.0%
TGGCTAAGAAGAATGGAGAA+TGG - chr1_2:27085339-27085358 Msa0065190:CDS 40.0%
AAGAAGAATGGAGAATGGCT+TGG - chr1_2:27085344-27085363 Msa0065190:CDS 40.0%
AACACACCAAAGAGGAATCA+AGG + chr1_2:27085696-27085715 None:intergenic 40.0%
GGTGTAAATTGGAGAACCAG+TGG + chr1_2:27084062-27084081 None:intergenic 45.0%
AGCTGGGGAACATCTATAGT+TGG - chr1_2:27084270-27084289 Msa0065190:three_prime_UTR 45.0%
GAAGAGTTAGTAAGCCAGTG+AGG - chr1_2:27084343-27084362 Msa0065190:three_prime_UTR 45.0%
ATCATAGGTTGCAACCTCAC+TGG + chr1_2:27084360-27084379 None:intergenic 45.0%
AGCCATTGCTTTACACTCTC+AGG - chr1_2:27084476-27084495 Msa0065190:intron 45.0%
! CACCTGAGAGTGTAAAGCAA+TGG + chr1_2:27084481-27084500 None:intergenic 45.0%
GCAGATGCAAAACAGAGACA+AGG - chr1_2:27085305-27085324 Msa0065190:CDS 45.0%
AACAGAGACAAGGGCTGATT+AGG - chr1_2:27085315-27085334 Msa0065190:CDS 45.0%
GGTGTAAATTGGAGAACCAG+TGG + chr1_2:27084062-27084081 None:intergenic 45.0%
AGCTGGGGAACATCTATAGT+TGG - chr1_2:27084270-27084289 Msa0065190:three_prime_UTR 45.0%
GAAGAGTTAGTAAGCCAGTG+AGG - chr1_2:27084343-27084362 Msa0065190:three_prime_UTR 45.0%
ATCATAGGTTGCAACCTCAC+TGG + chr1_2:27084360-27084379 None:intergenic 45.0%
AGCCATTGCTTTACACTCTC+AGG - chr1_2:27084476-27084495 Msa0065190:intron 45.0%
! CACCTGAGAGTGTAAAGCAA+TGG + chr1_2:27084481-27084500 None:intergenic 45.0%
GCAGATGCAAAACAGAGACA+AGG - chr1_2:27085305-27085324 Msa0065190:CDS 45.0%
AACAGAGACAAGGGCTGATT+AGG - chr1_2:27085315-27085334 Msa0065190:CDS 45.0%
!! AAATTATAGATAAAAAATTA+AGG - chr1_2:27084825-27084844 Msa0065190:intron 5.0%
!! AAATTATAGATAAAAAATTA+AGG - chr1_2:27084825-27084844 Msa0065190:intron 5.0%
GAGACAAGGGCTGATTAGGT+TGG - chr1_2:27085319-27085338 Msa0065190:CDS 50.0%
GAGACAAGGGCTGATTAGGT+TGG - chr1_2:27085319-27085338 Msa0065190:CDS 50.0%
CGGGAGGTAACACACCAAAG+AGG + chr1_2:27085704-27085723 None:intergenic 55.0%
CGGGAGGTAACACACCAAAG+AGG + chr1_2:27085704-27085723 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 27084038 27085724 27084038 ID=Msa0065190;Name=Msa0065190
chr1_2 mRNA 27084038 27085724 27084038 ID=Msa0065190-mRNA-1;Parent=Msa0065190;Name=Msa0065190-mRNA-1;_AED=0.01;_eAED=0.01;_QI=181|1|1|1|1|1|2|345|127
chr1_2 exon 27084038 27084487 27084038 ID=Msa0065190-mRNA-1:exon:9495;Parent=Msa0065190-mRNA-1
chr1_2 exon 27085265 27085724 27085265 ID=Msa0065190-mRNA-1:exon:9494;Parent=Msa0065190-mRNA-1
chr1_2 five_prime_UTR 27085544 27085724 27085544 ID=Msa0065190-mRNA-1:five_prime_utr;Parent=Msa0065190-mRNA-1
chr1_2 CDS 27085265 27085543 27085265 ID=Msa0065190-mRNA-1:cds;Parent=Msa0065190-mRNA-1
chr1_2 CDS 27084383 27084487 27084383 ID=Msa0065190-mRNA-1:cds;Parent=Msa0065190-mRNA-1
chr1_2 three_prime_UTR 27084038 27084382 27084038 ID=Msa0065190-mRNA-1:three_prime_utr;Parent=Msa0065190-mRNA-1
Gene Sequence

>Msa0065190

ATGGCTACTTCAATTTCTGCAACAGGTTGTGTTGGTTCATCATTCTATGGAAGCTGGGGAACATCTATAGTTGGTGAAGATTACAGCATGTTGGCTAAGTCAGTTTCTTCGCAAGTTCGTATTGGAAGAGTTAGTAAGCCAGTGAGGTTGCAACCTATGATGAAGAATGTTAATGAAGGGAAAGGTATATTTGCTCCAATTGTTGTGGTTACTCGTAATATTGTTGGAAAGAAACGTTTCAATCAGCTTAGAGGCAAAGCCATTGCTTTACACTCTCAGGTAATTACTGAATTCTGCAAATCAATAGGAGCAGATGCAAAACAGAGACAAGGGCTGATTAGGTTGGCTAAGAAGAATGGAGAATGGCTTGGTTTTCTTGCATGA

Protein sequence

>Msa0065190

MATSISATGCVGSSFYGSWGTSIVGEDYSMLAKSVSSQVRIGRVSKPVRLQPMMKNVNEGKGIFAPIVVVTRNIVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGEWLGFLA*