Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532770 | XP_003607080.1 | 98.706 | 309 | 4 | 0 | 1 | 309 | 1 | 309 | 0.0 | 637 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532770 | sp|P28475|S6PD_MALDO | 70.358 | 307 | 91 | 0 | 3 | 309 | 4 | 310 | 2.81e-169 | 474 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532770 | G7JJX4 | 98.706 | 309 | 4 | 0 | 1 | 309 | 1 | 309 | 0.0 | 637 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0376510 | Msa0532770 | 0.806926 | 6.489411e-50 | -8.615850e-47 |
| Msa0425050 | Msa0532770 | 0.809678 | 1.680792e-50 | -8.615850e-47 |
| Msa0472380 | Msa0532770 | 0.811230 | 7.767589e-51 | -8.615850e-47 |
| Msa0318000 | Msa0532770 | 0.803692 | 3.087078e-49 | -8.615850e-47 |
| Msa0524120 | Msa0532770 | 0.803926 | 2.760255e-49 | -8.615850e-47 |
| Msa0532770 | Msa0663090 | 0.806186 | 9.296122e-50 | -8.615850e-47 |
| Msa0532770 | Msa0716560 | 0.800610 | 1.329474e-48 | -8.615850e-47 |
| Msa0532770 | Msa1125950 | 0.800164 | 1.638329e-48 | -8.615850e-47 |
| Msa0532770 | Msa1171340 | 0.802584 | 5.234725e-49 | -8.615850e-47 |
| Msa0532770 | Msa1210770 | 0.800342 | 1.507521e-48 | -8.615850e-47 |
| Msa0532770 | Msa1303720 | 0.816337 | 5.824878e-52 | -8.615850e-47 |
| Msa0532770 | Msa1303780 | 0.821393 | 4.135519e-53 | -8.615850e-47 |
| Msa0532770 | Msa1363120 | 0.831420 | 1.685961e-55 | -8.615850e-47 |
| Msa0532770 | Msa1464560 | 0.811644 | 6.316422e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532770 | MtrunA17_Chr4g0036051 | 98.706 | 309 | 4 | 0 | 1 | 309 | 1 | 309 | 0.0 | 637 |
| Msa0532770 | MtrunA17_Chr8g0368921 | 42.705 | 281 | 147 | 5 | 5 | 281 | 10 | 280 | 3.77e-76 | 235 |
| Msa0532770 | MtrunA17_Chr7g0239701 | 42.143 | 280 | 147 | 4 | 5 | 282 | 14 | 280 | 1.26e-69 | 219 |
| Msa0532770 | MtrunA17_Chr8g0368931 | 40.071 | 282 | 155 | 4 | 3 | 282 | 8 | 277 | 7.14e-69 | 217 |
| Msa0532770 | MtrunA17_Chr6g0480011 | 39.057 | 297 | 166 | 6 | 3 | 293 | 9 | 296 | 4.71e-65 | 207 |
| Msa0532770 | MtrunA17_Chr4g0018921 | 38.380 | 284 | 163 | 4 | 3 | 284 | 6 | 279 | 5.26e-65 | 207 |
| Msa0532770 | MtrunA17_Chr6g0479981 | 40.893 | 291 | 155 | 7 | 3 | 287 | 9 | 288 | 3.00e-64 | 205 |
| Msa0532770 | MtrunA17_Chr1g0173621 | 36.913 | 298 | 172 | 7 | 11 | 302 | 20 | 307 | 4.31e-63 | 202 |
| Msa0532770 | MtrunA17_Chr4g0009531 | 40.714 | 280 | 150 | 5 | 5 | 282 | 10 | 275 | 5.18e-63 | 201 |
| Msa0532770 | MtrunA17_Chr6g0480021 | 39.796 | 294 | 147 | 7 | 3 | 292 | 9 | 276 | 1.31e-62 | 200 |
| Msa0532770 | MtrunA17_Chr4g0009581 | 40.418 | 287 | 144 | 4 | 5 | 288 | 11 | 273 | 1.37e-61 | 197 |
| Msa0532770 | MtrunA17_Chr3g0121001 | 36.184 | 304 | 178 | 6 | 10 | 308 | 20 | 312 | 5.19e-58 | 189 |
| Msa0532770 | MtrunA17_Chr5g0447941 | 39.088 | 307 | 172 | 6 | 6 | 308 | 15 | 310 | 2.64e-57 | 187 |
| Msa0532770 | MtrunA17_Chr5g0447951 | 39.088 | 307 | 172 | 6 | 6 | 308 | 15 | 310 | 2.72e-57 | 187 |
| Msa0532770 | MtrunA17_Chr5g0447961 | 39.088 | 307 | 172 | 6 | 6 | 308 | 15 | 310 | 2.72e-57 | 187 |
| Msa0532770 | MtrunA17_Chr7g0243551 | 39.502 | 281 | 153 | 6 | 5 | 283 | 17 | 282 | 8.05e-52 | 172 |
| Msa0532770 | MtrunA17_Chr4g0009621 | 38.009 | 221 | 110 | 4 | 71 | 288 | 1 | 197 | 1.03e-35 | 128 |
| Msa0532770 | MtrunA17_Chr4g0036261 | 38.411 | 151 | 90 | 1 | 138 | 288 | 6 | 153 | 5.40e-32 | 117 |
| Msa0532770 | MtrunA17_Chr4g0036301 | 37.500 | 144 | 87 | 1 | 145 | 288 | 1 | 141 | 5.06e-28 | 106 |
| Msa0532770 | MtrunA17_Chr4g0036321 | 37.838 | 148 | 89 | 1 | 145 | 292 | 1 | 145 | 1.52e-27 | 105 |
| Msa0532770 | MtrunA17_Chr6g0485421 | 91.667 | 48 | 4 | 0 | 58 | 105 | 40 | 87 | 3.35e-24 | 94.4 |
| Msa0532770 | MtrunA17_Chr4g0036251 | 47.917 | 96 | 44 | 3 | 3 | 95 | 9 | 101 | 6.18e-21 | 85.9 |
| Msa0532770 | MtrunA17_Chr4g0036291 | 43.434 | 99 | 50 | 3 | 3 | 95 | 9 | 107 | 1.09e-20 | 85.5 |
| Msa0532770 | MtrunA17_Chr4g0036311 | 40.404 | 99 | 53 | 3 | 3 | 95 | 9 | 107 | 3.50e-19 | 81.3 |
| Msa0532770 | MtrunA17_Chr7g0274071 | 27.385 | 325 | 161 | 12 | 8 | 288 | 22 | 315 | 1.03e-18 | 85.5 |
| Msa0532770 | MtrunA17_Chr7g0274061 | 25.846 | 325 | 172 | 10 | 8 | 288 | 20 | 319 | 5.92e-16 | 77.4 |
| Msa0532770 | MtrunA17_Chr7g0221791 | 25.697 | 323 | 166 | 9 | 6 | 284 | 11 | 303 | 5.32e-14 | 71.6 |
| Msa0532770 | MtrunA17_Chr6g0479811 | 32.407 | 108 | 70 | 1 | 186 | 293 | 2 | 106 | 5.49e-14 | 67.4 |
| Msa0532770 | MtrunA17_Chr1g0204651 | 24.567 | 289 | 152 | 8 | 37 | 288 | 51 | 310 | 2.89e-13 | 69.3 |
| Msa0532770 | MtrunA17_Chr3g0127491 | 22.807 | 285 | 166 | 9 | 33 | 284 | 79 | 342 | 3.49e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532770 | AT2G21250.1 | 86.084 | 309 | 43 | 0 | 1 | 309 | 1 | 309 | 0.0 | 568 |
| Msa0532770 | AT2G21260.1 | 84.790 | 309 | 47 | 0 | 1 | 309 | 1 | 309 | 0.0 | 560 |
| Msa0532770 | AT2G21250.2 | 87.554 | 233 | 29 | 0 | 1 | 233 | 1 | 233 | 1.79e-156 | 437 |
| Msa0532770 | AT2G21260.2 | 83.544 | 237 | 39 | 0 | 73 | 309 | 5 | 241 | 5.99e-153 | 428 |
| Msa0532770 | AT2G37790.1 | 41.844 | 282 | 149 | 6 | 5 | 284 | 10 | 278 | 6.35e-75 | 233 |
| Msa0532770 | AT2G37770.2 | 41.727 | 278 | 148 | 5 | 5 | 280 | 10 | 275 | 1.38e-74 | 232 |
| Msa0532770 | AT2G37760.5 | 40.357 | 280 | 149 | 4 | 5 | 282 | 10 | 273 | 8.08e-70 | 219 |
| Msa0532770 | AT2G37760.4 | 40.357 | 280 | 149 | 4 | 5 | 282 | 10 | 273 | 1.05e-69 | 218 |
| Msa0532770 | AT2G37760.3 | 40.357 | 280 | 149 | 4 | 5 | 282 | 10 | 273 | 1.05e-69 | 218 |
| Msa0532770 | AT2G37760.2 | 40.357 | 280 | 149 | 4 | 5 | 282 | 10 | 273 | 3.98e-69 | 218 |
| Msa0532770 | AT2G37760.1 | 40.357 | 280 | 149 | 4 | 5 | 282 | 10 | 273 | 3.98e-69 | 218 |
| Msa0532770 | AT3G53880.1 | 39.643 | 280 | 155 | 6 | 5 | 282 | 10 | 277 | 8.55e-68 | 214 |
| Msa0532770 | AT3G53880.2 | 39.643 | 280 | 155 | 6 | 5 | 282 | 10 | 277 | 1.14e-67 | 214 |
| Msa0532770 | AT5G01670.1 | 38.384 | 297 | 166 | 6 | 2 | 296 | 15 | 296 | 1.51e-67 | 214 |
| Msa0532770 | AT1G59960.1 | 37.457 | 291 | 166 | 6 | 11 | 295 | 21 | 301 | 5.13e-63 | 202 |
| Msa0532770 | AT5G01670.2 | 35.185 | 324 | 166 | 6 | 2 | 296 | 15 | 323 | 7.20e-63 | 202 |
| Msa0532770 | AT5G62420.1 | 35.294 | 289 | 176 | 4 | 5 | 291 | 8 | 287 | 5.30e-62 | 199 |
| Msa0532770 | AT2G37770.1 | 43.284 | 201 | 103 | 3 | 5 | 203 | 10 | 201 | 8.30e-54 | 177 |
| Msa0532770 | AT1G59950.1 | 38.028 | 284 | 160 | 6 | 11 | 288 | 15 | 288 | 8.31e-53 | 176 |
| Msa0532770 | AT2G37760.6 | 37.768 | 233 | 131 | 3 | 52 | 282 | 7 | 227 | 5.73e-51 | 169 |
| Msa0532770 | AT2G37760.7 | 37.768 | 233 | 131 | 3 | 52 | 282 | 7 | 227 | 5.73e-51 | 169 |
| Msa0532770 | AT1G60750.1 | 25.899 | 278 | 153 | 8 | 29 | 284 | 46 | 292 | 7.82e-14 | 71.2 |
| Msa0532770 | AT5G53580.1 | 24.913 | 289 | 153 | 11 | 33 | 283 | 80 | 342 | 1.23e-12 | 68.2 |
| Msa0532770 | AT1G60680.1 | 25.566 | 309 | 171 | 11 | 17 | 292 | 34 | 316 | 3.94e-12 | 66.6 |
Find 98 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGCTTCAGTTAGATTATC+TGG | 0.178661 | 4_1:+7311579 | Msa0532770:CDS |
| CCCGCTGTTATCAAATCTTT+TGG | 0.239022 | 4_1:+7313894 | Msa0532770:three_prime_UTR |
| ATCAGACGGGCCTTCAATAT+TGG | 0.243916 | 4_1:-7310861 | None:intergenic |
| CTAATCAACCGGCCAAGTTT+TGG | 0.265438 | 4_1:+7313664 | Msa0532770:CDS |
| CAATCATTGGACTTGGAGTT+TGG | 0.270385 | 4_1:+7310977 | Msa0532770:CDS |
| GATTAAGCAACAAAATATTC+TGG | 0.290173 | 4_1:-7313934 | None:intergenic |
| TGCCCAGATTTCTCTTCGTT+GGG | 0.314026 | 4_1:+7313506 | Msa0532770:CDS |
| CCAGGTAGTTTCCAGGGATA+TGG | 0.324257 | 4_1:-7312443 | None:intergenic |
| CTGCCCAGATTTCTCTTCGT+TGG | 0.333212 | 4_1:+7313505 | Msa0532770:CDS |
| TTTGGCATATGCTAAACTTT+TGG | 0.338141 | 4_1:+7313803 | Msa0532770:three_prime_UTR |
| AGGCCTTGTTTCATCGGGCT+TGG | 0.352439 | 4_1:+7312477 | Msa0532770:CDS |
| AGAGACTCGCGCTGGAAGTA+TGG | 0.358783 | 4_1:-7313224 | None:intergenic |
| CATTCCTAAAACATCAAAAC+TGG | 0.371742 | 4_1:+7313551 | Msa0532770:CDS |
| TACTCCCATCCTCGTCCATT+TGG | 0.372891 | 4_1:+7313973 | Msa0532770:three_prime_UTR |
| ATTCTGGATTCTCCCTCATT+TGG | 0.373246 | 4_1:-7313918 | None:intergenic |
| TCAGACGGGCCTTCAATATT+GGG | 0.375412 | 4_1:-7310860 | None:intergenic |
| TGGTACTACTGATAGTGCTT+TGG | 0.377006 | 4_1:+7312390 | Msa0532770:CDS |
| ATTTACAGCAGGCTTTATCT+TGG | 0.383165 | 4_1:-7313186 | None:intergenic |
| ATTATCAATTCCATCAAAAT+CGG | 0.396777 | 4_1:+7311030 | Msa0532770:CDS |
| GGTACTACTGATAGTGCTTT+GGG | 0.398671 | 4_1:+7312391 | Msa0532770:CDS |
| AAGATCTATGCCCCAAAACT+TGG | 0.402377 | 4_1:-7313676 | None:intergenic |
| TCGCATGCCAGGTAGTTTCC+AGG | 0.413644 | 4_1:-7312450 | None:intergenic |
| CAGCTTTGGAATTCTGATCA+TGG | 0.427560 | 4_1:+7311523 | Msa0532770:intron |
| GGAAAAGTAACTGTTGGGCT+TGG | 0.432877 | 4_1:+7310819 | None:intergenic |
| GATGGAAGGCCTTGTTTCAT+CGG | 0.446325 | 4_1:+7312471 | Msa0532770:CDS |
| ATGGAAGGCCTTGTTTCATC+GGG | 0.446988 | 4_1:+7312472 | Msa0532770:CDS |
| TGGTTCGAAGCATAGGAATC+AGG | 0.450692 | 4_1:+7312497 | Msa0532770:CDS |
| GAAAAGTAACTGTTGGGCTT+GGG | 0.451210 | 4_1:+7310820 | None:intergenic |
| GTTTGGTACAGAGTCATGTT+TGG | 0.456307 | 4_1:+7313325 | Msa0532770:CDS |
| TCCTTTCTAAACATGTATCA+TGG | 0.458545 | 4_1:+7313717 | Msa0532770:three_prime_UTR |
| CAGCACCTCCAAGTGGAGTG+TGG | 0.464776 | 4_1:-7313286 | None:intergenic |
| TCAATATTGGGCCACTATCT+CGG | 0.474048 | 4_1:-7310848 | None:intergenic |
| GAGATTGAAAGAGAACTTCC+AGG | 0.476154 | 4_1:+7313575 | Msa0532770:CDS |
| TACAAGAATGAAGCAGAAGT+TGG | 0.480314 | 4_1:+7311170 | Msa0532770:CDS |
| GAAATATCGAACTAATCAAC+CGG | 0.481471 | 4_1:+7313653 | Msa0532770:CDS |
| AAGATGCCAATCATTGGACT+TGG | 0.484856 | 4_1:+7310970 | Msa0532770:CDS |
| AAGGCCTTCCATCGCATGCC+AGG | 0.485617 | 4_1:-7312461 | None:intergenic |
| GATAGTGCTTTGGGTGAAGA+TGG | 0.488339 | 4_1:+7312400 | Msa0532770:CDS |
| GGATTCAAGATGCCAATCAT+TGG | 0.488816 | 4_1:+7310964 | Msa0532770:CDS |
| CAAACTCCAAGTCCAATGAT+TGG | 0.497148 | 4_1:-7310976 | None:intergenic |
| AGCACCTCCAAGTGGAGTGT+GGG | 0.505998 | 4_1:-7313285 | None:intergenic |
| GCAGCAAACAAAGAATGGTT+TGG | 0.506549 | 4_1:+7313308 | Msa0532770:CDS |
| CGAGGATGGGAGTAAACAAA+TGG | 0.507148 | 4_1:-7313964 | None:intergenic |
| TCGGGCTTGGTTCGAAGCAT+AGG | 0.508910 | 4_1:+7312490 | Msa0532770:CDS |
| CCAGTGTGCCTAGTGGCTAC+AGG | 0.509750 | 4_1:-7311622 | None:intergenic |
| AGATAGTGGCCCAATATTGA+AGG | 0.511879 | 4_1:+7310851 | Msa0532770:five_prime_UTR |
| CTTGGGCTATTCCGAGATAG+TGG | 0.513372 | 4_1:+7310837 | Msa0532770:five_prime_UTR |
| TGATACATGTTTAGAAAGGA+AGG | 0.515466 | 4_1:-7313714 | None:intergenic |
| GCCCAGATTTCTCTTCGTTG+GGG | 0.516778 | 4_1:+7313507 | Msa0532770:CDS |
| TTTGGGTGAAGATGGGGTGC+TGG | 0.520967 | 4_1:+7312408 | Msa0532770:CDS |
| CCAAAAGATTTGATAACAGC+GGG | 0.526360 | 4_1:-7313894 | None:intergenic |
| CTTGGAGTTTGGCGCATGGA+AGG | 0.527245 | 4_1:+7310988 | Msa0532770:CDS |
| TAGATATTATGAACTATGCT+TGG | 0.531813 | 4_1:+7313850 | Msa0532770:three_prime_UTR |
| CCCAGATTTCTCTTCGTTGG+GGG | 0.533067 | 4_1:+7313508 | Msa0532770:CDS |
| GTTTCAATCTGATTTACAGC+AGG | 0.535497 | 4_1:-7313197 | None:intergenic |
| CCATATCCCTGGAAACTACC+TGG | 0.536079 | 4_1:+7312443 | Msa0532770:CDS |
| ATAATCAAATTGTACCTTGG+TGG | 0.537689 | 4_1:-7311252 | None:intergenic |
| AGCTCATCAACGGTATGGAC+AGG | 0.538810 | 4_1:+7313631 | Msa0532770:CDS |
| TTCACTTTCCTGTAGCCACT+AGG | 0.540134 | 4_1:+7311614 | Msa0532770:CDS |
| GATGACCAAATGGACGAGGA+TGG | 0.540899 | 4_1:-7313978 | None:intergenic |
| ATAGTGCTTTGGGTGAAGAT+GGG | 0.542552 | 4_1:+7312401 | Msa0532770:CDS |
| GTGCTGCAGCAAACAAAGAA+TGG | 0.545070 | 4_1:+7313303 | Msa0532770:CDS |
| TGACACTGGACTTGTGAAGA+GGG | 0.546697 | 4_1:+7311214 | Msa0532770:CDS |
| TGAGTTGTCTAAAGAGGACA+TGG | 0.548008 | 4_1:+7313608 | Msa0532770:CDS |
| CTCAAATGAGCTACAATGGA+TGG | 0.548043 | 4_1:-7313827 | None:intergenic |
| GTAACAGCCCACACTCCACT+TGG | 0.555247 | 4_1:+7313278 | Msa0532770:CDS |
| TCGGAGTTTCAGAGGTGAGA+AGG | 0.556568 | 4_1:+7310903 | Msa0532770:five_prime_UTR |
| TCTACTCAAATGAGCTACAA+TGG | 0.559292 | 4_1:-7313831 | None:intergenic |
| ACCATGATACATGTTTAGAA+AGG | 0.560304 | 4_1:-7313718 | None:intergenic |
| ATGACCAAATGGACGAGGAT+GGG | 0.561339 | 4_1:-7313977 | None:intergenic |
| CATAGATACAACCATATCCC+TGG | 0.561415 | 4_1:+7312432 | Msa0532770:CDS |
| CATGGAGCTCATCAACGGTA+TGG | 0.562792 | 4_1:+7313626 | Msa0532770:CDS |
| ACTACCTGGCATGCGATGGA+AGG | 0.563810 | 4_1:+7312457 | Msa0532770:CDS |
| CGCATGCCAGGTAGTTTCCA+GGG | 0.567596 | 4_1:-7312449 | None:intergenic |
| TTGACACTGGACTTGTGAAG+AGG | 0.573004 | 4_1:+7311213 | Msa0532770:CDS |
| GGAAACTACCTGGCATGCGA+TGG | 0.573428 | 4_1:+7312453 | Msa0532770:CDS |
| ACAGCCCACACTCCACTTGG+AGG | 0.575322 | 4_1:+7313281 | Msa0532770:CDS |
| TCCAAAAGATTTGATAACAG+CGG | 0.577726 | 4_1:-7313895 | None:intergenic |
| TGTCAGTGTCGGAGTTTCAG+AGG | 0.578937 | 4_1:+7310895 | Msa0532770:five_prime_UTR |
| ACAATGCTATATATATCAGA+CGG | 0.582287 | 4_1:-7310875 | None:intergenic |
| ATACAAGTCTCAAAGTTGAA+AGG | 0.587101 | 4_1:-7313769 | None:intergenic |
| TTTGCTGCAGCACCTCCAAG+TGG | 0.593943 | 4_1:-7313293 | None:intergenic |
| CCTGTAGCCACTAGGCACAC+TGG | 0.596234 | 4_1:+7311622 | Msa0532770:CDS |
| TCTATGCCCCAAAACTTGGC+CGG | 0.596819 | 4_1:-7313672 | None:intergenic |
| ACAACTCAAAATCAAATACC+TGG | 0.601173 | 4_1:-7313593 | None:intergenic |
| CAATGCTATATATATCAGAC+GGG | 0.602637 | 4_1:-7310874 | None:intergenic |
| GAACCAAGCCCGATGAAACA+AGG | 0.606306 | 4_1:-7312480 | None:intergenic |
| ATATATAGCATTGTCAGTGT+CGG | 0.612418 | 4_1:+7310884 | Msa0532770:five_prime_UTR |
| TGGACTTGGAGTTTGGCGCA+TGG | 0.614053 | 4_1:+7310984 | Msa0532770:CDS |
| TGATCATGGACACGTTGTCG+AGG | 0.621022 | 4_1:+7311537 | Msa0532770:CDS |
| CATGGATGACCAAATGGACG+AGG | 0.627705 | 4_1:-7313982 | None:intergenic |
| TAGTGCTTTGGGTGAAGATG+GGG | 0.627757 | 4_1:+7312402 | Msa0532770:CDS |
| GATACATGTTTAGAAAGGAA+GGG | 0.636790 | 4_1:-7313713 | None:intergenic |
| ATTTGACAAGAGACTCGCGC+TGG | 0.644693 | 4_1:-7313232 | None:intergenic |
| GAGGACATGGAGCTCATCAA+CGG | 0.648344 | 4_1:+7313621 | Msa0532770:CDS |
| CACTGGACTTGTGAAGAGGG+AGG | 0.668718 | 4_1:+7311217 | Msa0532770:CDS |
| ATGGCAATCACACTGAACAG+CGG | 0.712465 | 4_1:+7310943 | Msa0532770:CDS |
| AAACATACCAGTGTGCCTAG+TGG | 0.724092 | 4_1:-7311629 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTACTCCTTTAAATT+TGG | + | chr4_1:7311091-7311110 | Msa0532770:intron | 15.0% |
| !! | ATTATATACATATGTGAAAT+AGG | + | chr4_1:7311270-7311289 | Msa0532770:intron | 15.0% |
| !!! | TATCTTATTAAAAAGCATAA+AGG | - | chr4_1:7311788-7311807 | None:intergenic | 15.0% |
| !! | ATATATAAATGCTAAAACAT+TGG | + | chr4_1:7311983-7312002 | Msa0532770:intron | 15.0% |
| !! | ATTGACATCTAATAATAAAA+TGG | + | chr4_1:7312030-7312049 | Msa0532770:intron | 15.0% |
| !!! | ATGAATTTTACCTAATAATA+AGG | + | chr4_1:7312602-7312621 | Msa0532770:intron | 15.0% |
| !!! | TTTTGATGGAATTGATAATT+AGG | - | chr4_1:7311029-7311048 | None:intergenic | 20.0% |
| !! | ATTATCAATTCCATCAAAAT+CGG | + | chr4_1:7311030-7311049 | Msa0532770:CDS | 20.0% |
| !! | AGATTGAAATCCAAATTTAA+AGG | - | chr4_1:7311104-7311123 | None:intergenic | 20.0% |
| !! | TATATAATCAAATTGTACCT+TGG | - | chr4_1:7311258-7311277 | None:intergenic | 20.0% |
| !!! | ATTTAATTTGTATACATCGA+CGG | - | chr4_1:7311308-7311327 | None:intergenic | 20.0% |
| !!! | ATTTAGGATAAAATCAATTG+TGG | - | chr4_1:7311442-7311461 | None:intergenic | 20.0% |
| !! | TAGAAATTGCTAATCTATTT+AGG | - | chr4_1:7311458-7311477 | None:intergenic | 20.0% |
| !! | CAATTTCTACTTAGTTATTA+TGG | + | chr4_1:7311469-7311488 | Msa0532770:intron | 20.0% |
| !!! | CAAAGTATTGATATACTAAT+TGG | + | chr4_1:7311719-7311738 | Msa0532770:intron | 20.0% |
| !! | TTCTATACATTCTATTTACT+TGG | + | chr4_1:7311809-7311828 | Msa0532770:intron | 20.0% |
| !! | AGCCAAAAAAAATGTTATAA+TGG | + | chr4_1:7311908-7311927 | Msa0532770:intron | 20.0% |
| !! | GCCAAAAAAAATGTTATAAT+GGG | + | chr4_1:7311909-7311928 | Msa0532770:intron | 20.0% |
| !! | CCAAAAAAAATGTTATAATG+GGG | + | chr4_1:7311910-7311929 | Msa0532770:intron | 20.0% |
| !! | AAATTCACAGTTATCTATAA+AGG | - | chr4_1:7312301-7312320 | None:intergenic | 20.0% |
| !! | TTGACTATTTCCTTATTATT+AGG | - | chr4_1:7312615-7312634 | None:intergenic | 20.0% |
| !! | TAAGCATTATTATTCCATTA+GGG | - | chr4_1:7312966-7312985 | None:intergenic | 20.0% |
| !! | TTTGTCTAATCTATTGAAAA+GGG | + | chr4_1:7313004-7313023 | Msa0532770:intron | 20.0% |
| !! | TGGTTAAAAGATAAGATAAT+AGG | - | chr4_1:7313406-7313425 | None:intergenic | 20.0% |
| ! | ACAATGCTATATATATCAGA+CGG | - | chr4_1:7310878-7310897 | None:intergenic | 25.0% |
| ! | GGAAAGAAAGAAAGAAAAAA+TGG | + | chr4_1:7310924-7310943 | Msa0532770:exon | 25.0% |
| ! | ACTTAGTTATTATGGCTTAA+TGG | + | chr4_1:7311477-7311496 | Msa0532770:intron | 25.0% |
| ! | CATCAAAACTAAAAAGTCAA+GGG | - | chr4_1:7311669-7311688 | None:intergenic | 25.0% |
| ! | TCATCAAAACTAAAAAGTCA+AGG | - | chr4_1:7311670-7311689 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTGGGATATTTTA+AGG | + | chr4_1:7311852-7311871 | Msa0532770:intron | 25.0% |
| ! | GTTTAACCATAGTTATCAAT+AGG | + | chr4_1:7311874-7311893 | Msa0532770:intron | 25.0% |
| !!! | CCCCATTATAACATTTTTTT+TGG | - | chr4_1:7311913-7311932 | None:intergenic | 25.0% |
| ! | CATCTAATAATAAAATGGCA+TGG | + | chr4_1:7312035-7312054 | Msa0532770:intron | 25.0% |
| ! | AAACATAGAAGTAGTTAACA+AGG | + | chr4_1:7312068-7312087 | Msa0532770:intron | 25.0% |
| ! | TTATCTATAAAGGCCAATAA+TGG | - | chr4_1:7312291-7312310 | None:intergenic | 25.0% |
| ! | CATAAACTATAGTCGTAAAA+AGG | - | chr4_1:7312580-7312599 | None:intergenic | 25.0% |
| ! | AACTAATGACCAAATTTGAT+AGG | + | chr4_1:7312653-7312672 | Msa0532770:intron | 25.0% |
| !!! | ATGCACGTTTATGTTATTTT+GGG | + | chr4_1:7312747-7312766 | Msa0532770:intron | 25.0% |
| ! | GTTCATCATGATATTACTAA+CGG | + | chr4_1:7312819-7312838 | Msa0532770:intron | 25.0% |
| ! | CTAAGCATTATTATTCCATT+AGG | - | chr4_1:7312967-7312986 | None:intergenic | 25.0% |
| ! | GTTTGTCTAATCTATTGAAA+AGG | + | chr4_1:7313003-7313022 | Msa0532770:intron | 25.0% |
| ! | TTGTCTAATCTATTGAAAAG+GGG | + | chr4_1:7313005-7313024 | Msa0532770:intron | 25.0% |
| ! | ACACAAATTATACTTAAGAC+GGG | - | chr4_1:7313045-7313064 | None:intergenic | 25.0% |
| ! | CACACAAATTATACTTAAGA+CGG | - | chr4_1:7313046-7313065 | None:intergenic | 25.0% |
| !!! | TACTGATTTTGGATAGATAA+TGG | - | chr4_1:7313426-7313445 | None:intergenic | 25.0% |
| !!! | ATGATGTTTTCTAGCATATT+TGG | - | chr4_1:7313747-7313766 | None:intergenic | 25.0% |
| !!! | CTTGTATTGACATTTTGATT+TGG | + | chr4_1:7313785-7313804 | Msa0532770:three_prime_UTR | 25.0% |
| ! | TAGATATTATGAACTATGCT+TGG | + | chr4_1:7313850-7313869 | Msa0532770:three_prime_UTR | 25.0% |
| ! | GATTAAGCAACAAAATATTC+TGG | - | chr4_1:7313937-7313956 | None:intergenic | 25.0% |
| CAATGCTATATATATCAGAC+GGG | - | chr4_1:7310877-7310896 | None:intergenic | 30.0% | |
| ATATATAGCATTGTCAGTGT+CGG | + | chr4_1:7310884-7310903 | Msa0532770:five_prime_UTR | 30.0% | |
| ATAATCAAATTGTACCTTGG+TGG | - | chr4_1:7311255-7311274 | None:intergenic | 30.0% | |
| ATAAAGAAAGAAACAGCAAC+AGG | + | chr4_1:7311346-7311365 | Msa0532770:intron | 30.0% | |
| TAAAGAAAGAAACAGCAACA+GGG | + | chr4_1:7311347-7311366 | Msa0532770:intron | 30.0% | |
| ! | ATTATCGACGATAGCTATTT+TGG | + | chr4_1:7311376-7311395 | Msa0532770:intron | 30.0% |
| TATTATGGCTTAATGGTATC+TGG | + | chr4_1:7311484-7311503 | Msa0532770:intron | 30.0% | |
| ATTGAATCTGATTTCAGCTT+TGG | + | chr4_1:7311509-7311528 | Msa0532770:intron | 30.0% | |
| ! | TATGTAGAAACTCTTGTTGT+TGG | + | chr4_1:7311690-7311709 | Msa0532770:intron | 30.0% |
| !!! | GCCTATCAAAATTTTGGTTT+GGG | + | chr4_1:7311841-7311860 | Msa0532770:intron | 30.0% |
| !! | TCCCAAACCAAAATTTTGAT+AGG | - | chr4_1:7311845-7311864 | None:intergenic | 30.0% |
| ! | TTCATGCCTATTGATAACTA+TGG | - | chr4_1:7311883-7311902 | None:intergenic | 30.0% |
| ! | AAAATGTTATAATGGGGTAG+TGG | + | chr4_1:7311916-7311935 | Msa0532770:intron | 30.0% |
| GTTAACAAGGAAACAAAAGA+AGG | + | chr4_1:7312081-7312100 | Msa0532770:intron | 30.0% | |
| TGTAAAGAGATGTTTCAGAT+GGG | - | chr4_1:7312139-7312158 | None:intergenic | 30.0% | |
| TTGTAAAGAGATGTTTCAGA+TGG | - | chr4_1:7312140-7312159 | None:intergenic | 30.0% | |
| ! | ATCTGAAACATCTCTTTACA+AGG | + | chr4_1:7312139-7312158 | Msa0532770:intron | 30.0% |
| ! | TCTGAAACATCTCTTTACAA+GGG | + | chr4_1:7312140-7312159 | Msa0532770:intron | 30.0% |
| AGAAAAAGAGATGTTCAGAT+GGG | - | chr4_1:7312244-7312263 | None:intergenic | 30.0% | |
| TAGAAAAAGAGATGTTCAGA+TGG | - | chr4_1:7312245-7312264 | None:intergenic | 30.0% | |
| !! | CATGCACGTTTATGTTATTT+TGG | + | chr4_1:7312746-7312765 | Msa0532770:intron | 30.0% |
| GTAATATGAAACATGTGACA+AGG | - | chr4_1:7312916-7312935 | None:intergenic | 30.0% | |
| CATTATTATTCCATTAGGGT+AGG | - | chr4_1:7312962-7312981 | None:intergenic | 30.0% | |
| ! | TAATGCTTAGTTGCTATTGA+TGG | + | chr4_1:7312977-7312996 | Msa0532770:intron | 30.0% |
| ! | AATGCTTAGTTGCTATTGAT+GGG | + | chr4_1:7312978-7312997 | Msa0532770:intron | 30.0% |
| ! | CGTCTTAAGTATAATTTGTG+TGG | + | chr4_1:7313044-7313063 | Msa0532770:intron | 30.0% |
| AATAGGCTACTAATATGTGT+TGG | - | chr4_1:7313389-7313408 | None:intergenic | 30.0% | |
| !!! | CTAGTCACATTTACTGATTT+TGG | - | chr4_1:7313437-7313456 | None:intergenic | 30.0% |
| CATTCCTAAAACATCAAAAC+TGG | + | chr4_1:7313551-7313570 | Msa0532770:CDS | 30.0% | |
| ACAACTCAAAATCAAATACC+TGG | - | chr4_1:7313596-7313615 | None:intergenic | 30.0% | |
| !!! | TGATTTTGAGTTGTCTAAAG+AGG | + | chr4_1:7313602-7313621 | Msa0532770:CDS | 30.0% |
| GAAATATCGAACTAATCAAC+CGG | + | chr4_1:7313653-7313672 | Msa0532770:CDS | 30.0% | |
| GATACATGTTTAGAAAGGAA+GGG | - | chr4_1:7313716-7313735 | None:intergenic | 30.0% | |
| TGATACATGTTTAGAAAGGA+AGG | - | chr4_1:7313717-7313736 | None:intergenic | 30.0% | |
| TCCTTTCTAAACATGTATCA+TGG | + | chr4_1:7313717-7313736 | Msa0532770:three_prime_UTR | 30.0% | |
| ACCATGATACATGTTTAGAA+AGG | - | chr4_1:7313721-7313740 | None:intergenic | 30.0% | |
| ATACAAGTCTCAAAGTTGAA+AGG | - | chr4_1:7313772-7313791 | None:intergenic | 30.0% | |
| ! | TTTGGCATATGCTAAACTTT+TGG | + | chr4_1:7313803-7313822 | Msa0532770:three_prime_UTR | 30.0% |
| ! | TTGGCATATGCTAAACTTTT+GGG | + | chr4_1:7313804-7313823 | Msa0532770:three_prime_UTR | 30.0% |
| ! | TCCAAAAGATTTGATAACAG+CGG | - | chr4_1:7313898-7313917 | None:intergenic | 30.0% |
| ! | AAATCTTTTGGACCAAATGA+GGG | + | chr4_1:7313906-7313925 | Msa0532770:three_prime_UTR | 30.0% |
| !! | ATGACGATAACCGATTTTGA+TGG | - | chr4_1:7311043-7311062 | None:intergenic | 35.0% |
| !!! | TATCGTCATTTTGATTGTGC+AGG | + | chr4_1:7311054-7311073 | Msa0532770:CDS | 35.0% |
| TACAAGAATGAAGCAGAAGT+TGG | + | chr4_1:7311170-7311189 | Msa0532770:CDS | 35.0% | |
| ! | CTTAAAGAAGCTTTTGACAC+TGG | + | chr4_1:7311200-7311219 | Msa0532770:CDS | 35.0% |
| GAAGCTTCAGTTAGATTATC+TGG | + | chr4_1:7311579-7311598 | Msa0532770:CDS | 35.0% | |
| ! | AACTGCGCCTATCAAAATTT+TGG | + | chr4_1:7311835-7311854 | Msa0532770:intron | 35.0% |
| !!! | CGCCTATCAAAATTTTGGTT+TGG | + | chr4_1:7311840-7311859 | Msa0532770:intron | 35.0% |
| AGTTATCAATAGGCATGAAG+AGG | + | chr4_1:7311884-7311903 | Msa0532770:intron | 35.0% | |
| TAAAGAGATGTTTCAGATGG+GGG | - | chr4_1:7312137-7312156 | None:intergenic | 35.0% | |
| GTAAAGAGATGTTTCAGATG+GGG | - | chr4_1:7312138-7312157 | None:intergenic | 35.0% | |
| !! | TCTTTACAAGGGTGTTTGTA+GGG | + | chr4_1:7312151-7312170 | Msa0532770:intron | 35.0% |
| GTGCAAATAATAGCAGCTAT+TGG | - | chr4_1:7312194-7312213 | None:intergenic | 35.0% | |
| AAAAAGAGATGTTCAGATGG+GGG | - | chr4_1:7312242-7312261 | None:intergenic | 35.0% | |
| GAAAAAGAGATGTTCAGATG+GGG | - | chr4_1:7312243-7312262 | None:intergenic | 35.0% | |
| ATAGTGACAGTCACCATTAT+TGG | + | chr4_1:7312275-7312294 | Msa0532770:intron | 35.0% | |
| CCTCATGAACCTATCAAATT+TGG | - | chr4_1:7312665-7312684 | None:intergenic | 35.0% | |
| CCAAATTTGATAGGTTCATG+AGG | + | chr4_1:7312662-7312681 | Msa0532770:intron | 35.0% | |
| AATAACATAAACGTGCATGC+AGG | - | chr4_1:7312745-7312764 | None:intergenic | 35.0% | |
| TATTATTCCATTAGGGTAGG+CGG | - | chr4_1:7312959-7312978 | None:intergenic | 35.0% | |
| TATTGAAAAGGGGAATGTGT+TGG | + | chr4_1:7313015-7313034 | Msa0532770:intron | 35.0% | |
| ! | ATTTACAGCAGGCTTTATCT+TGG | - | chr4_1:7313189-7313208 | None:intergenic | 35.0% |
| GTTTCAATCTGATTTACAGC+AGG | - | chr4_1:7313200-7313219 | None:intergenic | 35.0% | |
| ! | GTCAAATTTTGTCAGAAGCA+TGG | + | chr4_1:7313248-7313267 | Msa0532770:CDS | 35.0% |
| !! | CTCTCCAGTTTTGATGTTTT+AGG | - | chr4_1:7313558-7313577 | None:intergenic | 35.0% |
| TCTACTCAAATGAGCTACAA+TGG | - | chr4_1:7313834-7313853 | None:intergenic | 35.0% | |
| ! | CCAAAAGATTTGATAACAGC+GGG | - | chr4_1:7313897-7313916 | None:intergenic | 35.0% |
| ! | CAAATCTTTTGGACCAAATG+AGG | + | chr4_1:7313905-7313924 | Msa0532770:three_prime_UTR | 35.0% |
| TCAATATTGGGCCACTATCT+CGG | - | chr4_1:7310851-7310870 | None:intergenic | 40.0% | |
| ! | AGATAGTGGCCCAATATTGA+AGG | + | chr4_1:7310851-7310870 | Msa0532770:five_prime_UTR | 40.0% |
| GGATTCAAGATGCCAATCAT+TGG | + | chr4_1:7310964-7310983 | Msa0532770:CDS | 40.0% | |
| AAGATGCCAATCATTGGACT+TGG | + | chr4_1:7310970-7310989 | Msa0532770:CDS | 40.0% | |
| CAAACTCCAAGTCCAATGAT+TGG | - | chr4_1:7310979-7310998 | None:intergenic | 40.0% | |
| CAATCATTGGACTTGGAGTT+TGG | + | chr4_1:7310977-7310996 | Msa0532770:CDS | 40.0% | |
| ! | GGATCTTTTCATTACCACCA+AGG | + | chr4_1:7311238-7311257 | Msa0532770:CDS | 40.0% |
| !! | CAGCTTTGGAATTCTGATCA+TGG | + | chr4_1:7311523-7311542 | Msa0532770:intron | 40.0% |
| !! | CTCTTTACAAGGGTGTTTGT+AGG | + | chr4_1:7312150-7312169 | Msa0532770:intron | 40.0% |
| ! | TGGTACTACTGATAGTGCTT+TGG | + | chr4_1:7312390-7312409 | Msa0532770:CDS | 40.0% |
| ! | GGTACTACTGATAGTGCTTT+GGG | + | chr4_1:7312391-7312410 | Msa0532770:CDS | 40.0% |
| ! | ATAGTGCTTTGGGTGAAGAT+GGG | + | chr4_1:7312401-7312420 | Msa0532770:CDS | 40.0% |
| CATAGATACAACCATATCCC+TGG | + | chr4_1:7312432-7312451 | Msa0532770:CDS | 40.0% | |
| ! | ATGCAAGACATTTTGTGTGC+TGG | + | chr4_1:7312888-7312907 | Msa0532770:intron | 40.0% |
| GCAGCAAACAAAGAATGGTT+TGG | + | chr4_1:7313308-7313327 | Msa0532770:CDS | 40.0% | |
| GTTTGGTACAGAGTCATGTT+TGG | + | chr4_1:7313325-7313344 | Msa0532770:CDS | 40.0% | |
| ! | AGTGTTGCGACTTTGATTTC+AGG | + | chr4_1:7313455-7313474 | Msa0532770:intron | 40.0% |
| ! | GTGTTGCGACTTTGATTTCA+GGG | + | chr4_1:7313456-7313475 | Msa0532770:intron | 40.0% |
| GAGATTGAAAGAGAACTTCC+AGG | + | chr4_1:7313575-7313594 | Msa0532770:CDS | 40.0% | |
| TGAGTTGTCTAAAGAGGACA+TGG | + | chr4_1:7313608-7313627 | Msa0532770:CDS | 40.0% | |
| ! | TAATCAACCGGCCAAGTTTT+GGG | + | chr4_1:7313665-7313684 | Msa0532770:CDS | 40.0% |
| AAGATCTATGCCCCAAAACT+TGG | - | chr4_1:7313679-7313698 | None:intergenic | 40.0% | |
| CTCAAATGAGCTACAATGGA+TGG | - | chr4_1:7313830-7313849 | None:intergenic | 40.0% | |
| ! | CCCGCTGTTATCAAATCTTT+TGG | + | chr4_1:7313894-7313913 | Msa0532770:three_prime_UTR | 40.0% |
| ATTCTGGATTCTCCCTCATT+TGG | - | chr4_1:7313921-7313940 | None:intergenic | 40.0% | |
| TCAGACGGGCCTTCAATATT+GGG | - | chr4_1:7310863-7310882 | None:intergenic | 45.0% | |
| ATCAGACGGGCCTTCAATAT+TGG | - | chr4_1:7310864-7310883 | None:intergenic | 45.0% | |
| ATGGCAATCACACTGAACAG+CGG | + | chr4_1:7310943-7310962 | Msa0532770:CDS | 45.0% | |
| TTGACACTGGACTTGTGAAG+AGG | + | chr4_1:7311213-7311232 | Msa0532770:CDS | 45.0% | |
| TGACACTGGACTTGTGAAGA+GGG | + | chr4_1:7311214-7311233 | Msa0532770:CDS | 45.0% | |
| TTCACTTTCCTGTAGCCACT+AGG | + | chr4_1:7311614-7311633 | Msa0532770:CDS | 45.0% | |
| AAACATACCAGTGTGCCTAG+TGG | - | chr4_1:7311632-7311651 | None:intergenic | 45.0% | |
| ACTAGGCACACTGGTATGTT+TGG | + | chr4_1:7311631-7311650 | Msa0532770:intron | 45.0% | |
| !! | TATAATGGGGTAGTGGAGAG+TGG | + | chr4_1:7311923-7311942 | Msa0532770:intron | 45.0% |
| AGATGTTTCAGATGGGGGAT+GGG | - | chr4_1:7312132-7312151 | None:intergenic | 45.0% | |
| CCACATTTCTCACACATGCA+GGG | + | chr4_1:7312365-7312384 | Msa0532770:intron | 45.0% | |
| CACATTTCTCACACATGCAG+GGG | + | chr4_1:7312366-7312385 | Msa0532770:intron | 45.0% | |
| ! | GATAGTGCTTTGGGTGAAGA+TGG | + | chr4_1:7312400-7312419 | Msa0532770:CDS | 45.0% |
| ! | TAGTGCTTTGGGTGAAGATG+GGG | + | chr4_1:7312402-7312421 | Msa0532770:CDS | 45.0% |
| !! | GATGGAAGGCCTTGTTTCAT+CGG | + | chr4_1:7312471-7312490 | Msa0532770:CDS | 45.0% |
| !! | ATGGAAGGCCTTGTTTCATC+GGG | + | chr4_1:7312472-7312491 | Msa0532770:CDS | 45.0% |
| TGGTTCGAAGCATAGGAATC+AGG | + | chr4_1:7312497-7312516 | Msa0532770:CDS | 45.0% | |
| ! | GTGACTTCTAGAAGTTGCTC+TGG | + | chr4_1:7312550-7312569 | Msa0532770:intron | 45.0% |
| ACGTGCATGCAGGAATTGTA+GGG | - | chr4_1:7312735-7312754 | None:intergenic | 45.0% | |
| AACGTGCATGCAGGAATTGT+AGG | - | chr4_1:7312736-7312755 | None:intergenic | 45.0% | |
| GTGCTGCAGCAAACAAAGAA+TGG | + | chr4_1:7313303-7313322 | Msa0532770:CDS | 45.0% | |
| TGCCCAGATTTCTCTTCGTT+GGG | + | chr4_1:7313506-7313525 | Msa0532770:CDS | 45.0% | |
| ! | CTAATCAACCGGCCAAGTTT+TGG | + | chr4_1:7313664-7313683 | Msa0532770:CDS | 45.0% |
| ! | AATCAACCGGCCAAGTTTTG+GGG | + | chr4_1:7313666-7313685 | Msa0532770:CDS | 45.0% |
| CGAGGATGGGAGTAAACAAA+TGG | - | chr4_1:7313967-7313986 | None:intergenic | 45.0% | |
| CTTGGGCTATTCCGAGATAG+TGG | + | chr4_1:7310837-7310856 | Msa0532770:five_prime_UTR | 50.0% | |
| ! | TGTCAGTGTCGGAGTTTCAG+AGG | + | chr4_1:7310895-7310914 | Msa0532770:five_prime_UTR | 50.0% |
| TCGGAGTTTCAGAGGTGAGA+AGG | + | chr4_1:7310903-7310922 | Msa0532770:five_prime_UTR | 50.0% | |
| TGATCATGGACACGTTGTCG+AGG | + | chr4_1:7311537-7311556 | Msa0532770:CDS | 50.0% | |
| ATGTTTCAGATGGGGGATGG+GGG | - | chr4_1:7312130-7312149 | None:intergenic | 50.0% | |
| GATGTTTCAGATGGGGGATG+GGG | - | chr4_1:7312131-7312150 | None:intergenic | 50.0% | |
| GAGATGTTTCAGATGGGGGA+TGG | - | chr4_1:7312133-7312152 | None:intergenic | 50.0% | |
| AGAGATGTTCAGATGGGGGA+CGG | - | chr4_1:7312238-7312257 | None:intergenic | 50.0% | |
| GCCACATTTCTCACACATGC+AGG | + | chr4_1:7312364-7312383 | Msa0532770:intron | 50.0% | |
| CCCTGCATGTGTGAGAAATG+TGG | - | chr4_1:7312368-7312387 | None:intergenic | 50.0% | |
| TTTCTCACACATGCAGGGGT+TGG | + | chr4_1:7312370-7312389 | Msa0532770:intron | 50.0% | |
| CCAGGTAGTTTCCAGGGATA+TGG | - | chr4_1:7312446-7312465 | None:intergenic | 50.0% | |
| CCATATCCCTGGAAACTACC+TGG | + | chr4_1:7312443-7312462 | Msa0532770:CDS | 50.0% | |
| GAACCAAGCCCGATGAAACA+AGG | - | chr4_1:7312483-7312502 | None:intergenic | 50.0% | |
| CATTAGGGTAGGCGGTAAAC+TGG | - | chr4_1:7312951-7312970 | None:intergenic | 50.0% | |
| CAGTTTACCGCCTACCCTAA+TGG | + | chr4_1:7312949-7312968 | Msa0532770:intron | 50.0% | |
| ATTTGACAAGAGACTCGCGC+TGG | - | chr4_1:7313235-7313254 | None:intergenic | 50.0% | |
| CTGCCCAGATTTCTCTTCGT+TGG | + | chr4_1:7313505-7313524 | Msa0532770:CDS | 50.0% | |
| GCCCAGATTTCTCTTCGTTG+GGG | + | chr4_1:7313507-7313526 | Msa0532770:CDS | 50.0% | |
| CCCCCAACGAAGAGAAATCT+GGG | - | chr4_1:7313511-7313530 | None:intergenic | 50.0% | |
| CCCAGATTTCTCTTCGTTGG+GGG | + | chr4_1:7313508-7313527 | Msa0532770:CDS | 50.0% | |
| TCCCCCAACGAAGAGAAATC+TGG | - | chr4_1:7313512-7313531 | None:intergenic | 50.0% | |
| CTCTTCGTTGGGGGATTCAA+AGG | + | chr4_1:7313517-7313536 | Msa0532770:CDS | 50.0% | |
| GAGGACATGGAGCTCATCAA+CGG | + | chr4_1:7313621-7313640 | Msa0532770:CDS | 50.0% | |
| CATGGAGCTCATCAACGGTA+TGG | + | chr4_1:7313626-7313645 | Msa0532770:CDS | 50.0% | |
| AGCTCATCAACGGTATGGAC+AGG | + | chr4_1:7313631-7313650 | Msa0532770:CDS | 50.0% | |
| TCTATGCCCCAAAACTTGGC+CGG | - | chr4_1:7313675-7313694 | None:intergenic | 50.0% | |
| TGGACTTGGAGTTTGGCGCA+TGG | + | chr4_1:7310984-7311003 | Msa0532770:CDS | 55.0% | |
| CTTGGAGTTTGGCGCATGGA+AGG | + | chr4_1:7310988-7311007 | Msa0532770:CDS | 55.0% | |
| CACTGGACTTGTGAAGAGGG+AGG | + | chr4_1:7311217-7311236 | Msa0532770:CDS | 55.0% | |
| AGCAGCTATTGGCCACGACA+GGG | - | chr4_1:7312183-7312202 | None:intergenic | 55.0% | |
| TAGCAGCTATTGGCCACGAC+AGG | - | chr4_1:7312184-7312203 | None:intergenic | 55.0% | |
| GGCAATCGCTGGGGGATTTA+AGG | - | chr4_1:7312216-7312235 | None:intergenic | 55.0% | |
| GAGATGTTCAGATGGGGGAC+GGG | - | chr4_1:7312237-7312256 | None:intergenic | 55.0% | |
| TTTGGGTGAAGATGGGGTGC+TGG | + | chr4_1:7312408-7312427 | Msa0532770:CDS | 55.0% | |
| CGCATGCCAGGTAGTTTCCA+GGG | - | chr4_1:7312452-7312471 | None:intergenic | 55.0% | |
| TCGCATGCCAGGTAGTTTCC+AGG | - | chr4_1:7312453-7312472 | None:intergenic | 55.0% | |
| GGAAACTACCTGGCATGCGA+TGG | + | chr4_1:7312453-7312472 | Msa0532770:CDS | 55.0% | |
| ACTACCTGGCATGCGATGGA+AGG | + | chr4_1:7312457-7312476 | Msa0532770:CDS | 55.0% | |
| !! | AGGCCTTGTTTCATCGGGCT+TGG | + | chr4_1:7312477-7312496 | Msa0532770:CDS | 55.0% |
| ! | TCGGGCTTGGTTCGAAGCAT+AGG | + | chr4_1:7312490-7312509 | Msa0532770:CDS | 55.0% |
| AGAGACTCGCGCTGGAAGTA+TGG | - | chr4_1:7313227-7313246 | None:intergenic | 55.0% | |
| GTAACAGCCCACACTCCACT+TGG | + | chr4_1:7313278-7313297 | Msa0532770:CDS | 55.0% | |
| AGCACCTCCAAGTGGAGTGT+GGG | - | chr4_1:7313288-7313307 | None:intergenic | 55.0% | |
| TTTGCTGCAGCACCTCCAAG+TGG | - | chr4_1:7313296-7313315 | None:intergenic | 55.0% | |
| CCAGTGTGCCTAGTGGCTAC+AGG | - | chr4_1:7311625-7311644 | None:intergenic | 60.0% | |
| CCTGTAGCCACTAGGCACAC+TGG | + | chr4_1:7311622-7311641 | Msa0532770:CDS | 60.0% | |
| !! | ATGGGGGATGGGGGTACTTC+GGG | - | chr4_1:7312121-7312140 | None:intergenic | 60.0% |
| !! | GATGGGGGATGGGGGTACTT+CGG | - | chr4_1:7312122-7312141 | None:intergenic | 60.0% |
| CTATTGGCCACGACAGGGGA+GGG | - | chr4_1:7312178-7312197 | None:intergenic | 60.0% | |
| GCAGCTATTGGCCACGACAG+GGG | - | chr4_1:7312182-7312201 | None:intergenic | 60.0% | |
| AAGGCCTTCCATCGCATGCC+AGG | - | chr4_1:7312464-7312483 | None:intergenic | 60.0% | |
| ACAGCCCACACTCCACTTGG+AGG | + | chr4_1:7313281-7313300 | Msa0532770:CDS | 60.0% | |
| CAGCACCTCCAAGTGGAGTG+TGG | - | chr4_1:7313289-7313308 | None:intergenic | 60.0% | |
| !! | TGGGGGATGGGGGTACTTCG+GGG | - | chr4_1:7312120-7312139 | None:intergenic | 65.0% |
| GCTATTGGCCACGACAGGGG+AGG | - | chr4_1:7312179-7312198 | None:intergenic | 65.0% | |
| ATGGGGGACGGGCAATCGCT+GGG | - | chr4_1:7312226-7312245 | None:intergenic | 65.0% | |
| GTAGGGTCCCTCCCCTGTCG+TGG | + | chr4_1:7312168-7312187 | Msa0532770:intron | 70.0% | |
| TGGGGGACGGGCAATCGCTG+GGG | - | chr4_1:7312225-7312244 | None:intergenic | 70.0% | |
| GATGGGGGACGGGCAATCGC+TGG | - | chr4_1:7312227-7312246 | None:intergenic | 70.0% | |
| GGGGGACGGGCAATCGCTGG+GGG | - | chr4_1:7312224-7312243 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 7310830 | 7313994 | 7310830 | ID=Msa0532770;Name=Msa0532770 |
| chr4_1 | mRNA | 7310830 | 7313994 | 7310830 | ID=Msa0532770-mRNA-1;Parent=Msa0532770;Name=Msa0532770-mRNA-1;_AED=0.06;_eAED=0.06;_QI=113|1|1|1|1|1|6|287|309 |
| chr4_1 | exon | 7310830 | 7311075 | 7310830 | ID=Msa0532770-mRNA-1:exon:2517;Parent=Msa0532770-mRNA-1 |
| chr4_1 | exon | 7311165 | 7311259 | 7311165 | ID=Msa0532770-mRNA-1:exon:2518;Parent=Msa0532770-mRNA-1 |
| chr4_1 | exon | 7311526 | 7311643 | 7311526 | ID=Msa0532770-mRNA-1:exon:2519;Parent=Msa0532770-mRNA-1 |
| chr4_1 | exon | 7312386 | 7312518 | 7312386 | ID=Msa0532770-mRNA-1:exon:2520;Parent=Msa0532770-mRNA-1 |
| chr4_1 | exon | 7313145 | 7313364 | 7313145 | ID=Msa0532770-mRNA-1:exon:2521;Parent=Msa0532770-mRNA-1 |
| chr4_1 | exon | 7313477 | 7313994 | 7313477 | ID=Msa0532770-mRNA-1:exon:2522;Parent=Msa0532770-mRNA-1 |
| chr4_1 | five_prime_UTR | 7310830 | 7310942 | 7310830 | ID=Msa0532770-mRNA-1:five_prime_utr;Parent=Msa0532770-mRNA-1 |
| chr4_1 | CDS | 7310943 | 7311075 | 7310943 | ID=Msa0532770-mRNA-1:cds;Parent=Msa0532770-mRNA-1 |
| chr4_1 | CDS | 7311165 | 7311259 | 7311165 | ID=Msa0532770-mRNA-1:cds;Parent=Msa0532770-mRNA-1 |
| chr4_1 | CDS | 7311526 | 7311643 | 7311526 | ID=Msa0532770-mRNA-1:cds;Parent=Msa0532770-mRNA-1 |
| chr4_1 | CDS | 7312386 | 7312518 | 7312386 | ID=Msa0532770-mRNA-1:cds;Parent=Msa0532770-mRNA-1 |
| chr4_1 | CDS | 7313145 | 7313364 | 7313145 | ID=Msa0532770-mRNA-1:cds;Parent=Msa0532770-mRNA-1 |
| chr4_1 | CDS | 7313477 | 7313707 | 7313477 | ID=Msa0532770-mRNA-1:cds;Parent=Msa0532770-mRNA-1 |
| chr4_1 | three_prime_UTR | 7313708 | 7313994 | 7313708 | ID=Msa0532770-mRNA-1:three_prime_utr;Parent=Msa0532770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
