AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0524120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524120 MtrunA17_Chr3g0145361 91.102 236 9 4 1 231 1 229 8.16e-137 383
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524120 AT4G34730.2 60.619 226 75 1 6 231 4 215 4.46e-89 262
Msa0524120 AT4G34730.3 60.619 226 75 1 6 231 4 215 4.46e-89 262
Msa0524120 AT4G34730.1 60.619 226 75 1 6 231 4 215 4.46e-89 262

Find 47 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTCACTGCGAACATATT+TGG 0.174334 3_4:+77599957 None:intergenic
TGAAATCACCGCTGATTTAC+AGG 0.294810 3_4:-77600317 Msa0524120:intron
AAATATGTTCGCAGTGAGTT+GGG 0.366464 3_4:-77599955 Msa0524120:CDS
GGCAAATTGCAAGACGTTAT+CGG 0.368809 3_4:+77600405 None:intergenic
GGGAAGGAAGTGGCCATGGC+TGG 0.375787 3_4:-77599994 Msa0524120:CDS
GTTCTTCCTGAAGCTTCCTT+AGG 0.384742 3_4:-77600382 Msa0524120:CDS
AAGTTCTCTCCGAATTTGTT+TGG 0.408703 3_4:+77600444 None:intergenic
TCAGCACCTAAGGAAGCTTC+AGG 0.415676 3_4:+77600376 None:intergenic
ACATAAATGATACCTTCTTC+AGG 0.417511 3_4:+77598833 None:intergenic
GAATCCAAGGAGAGTCAAAA+TGG 0.420166 3_4:-77600470 Msa0524120:CDS
AAATGGTTGCCAAACAAATT+CGG 0.421978 3_4:-77600453 Msa0524120:CDS
CAGATGAAGACGATGCTGAT+TGG 0.423415 3_4:-77598868 Msa0524120:CDS
AGATGAAGACGATGCTGATT+GGG 0.431019 3_4:-77598867 Msa0524120:CDS
GAGGTAAGAATCAGCACCTA+AGG 0.457882 3_4:+77600366 None:intergenic
CGGTCACACTCACACCTTGT+TGG 0.460357 3_4:-77600594 Msa0524120:CDS
AATAATGAGGATAAAGTGTA+TGG 0.478393 3_4:-77600494 Msa0524120:CDS
CAAATATGTTCGCAGTGAGT+TGG 0.480055 3_4:-77599956 Msa0524120:CDS
CATAAATGATACCTTCTTCA+GGG 0.510113 3_4:+77598834 None:intergenic
TGAAGAAGGTATCATTTATG+TGG 0.517227 3_4:-77598831 Msa0524120:CDS
GGTGATTTCAACGTCGGTGA+TGG 0.525546 3_4:+77600330 None:intergenic
GGAAGGAAGTGGCCATGGCT+GGG 0.525786 3_4:-77599993 Msa0524120:CDS
AGGCGTGAGTGGGTCCTCAC+AGG 0.545237 3_4:-77600529 Msa0524120:CDS
TTCAGACTCAGAGGCGTGAG+TGG 0.556986 3_4:-77600540 Msa0524120:CDS
AGATGAAAGAGGGAAGGAAG+TGG 0.566160 3_4:-77600004 Msa0524120:CDS
GAAGATGAAGACCCTGAAGA+AGG 0.579729 3_4:-77598845 Msa0524120:CDS
AAGAGGGAAGGAAGTGGCCA+TGG 0.582663 3_4:-77599998 Msa0524120:CDS
AACGTCGGTGATGGTGGTGA+CGG 0.583949 3_4:+77600339 None:intergenic
TGGGGAGGCGTATGAAGTTG+CGG 0.591668 3_4:-77599936 Msa0524120:CDS
TAAAGTGTATGGCGAATCCA+AGG 0.594849 3_4:-77600483 Msa0524120:CDS
AATATGTTCGCAGTGAGTTG+GGG 0.594957 3_4:-77599954 Msa0524120:CDS
TAAGGAAGCTTCAGGAAGAA+CGG 0.601825 3_4:+77600384 None:intergenic
ATGTTCGCAGTGAGTTGGGG+AGG 0.601873 3_4:-77599951 Msa0524120:CDS
TTCTTGAAGCATTTCCTGTG+AGG 0.605345 3_4:+77600515 None:intergenic
CGATTGTTACATCGCCAACA+AGG 0.616823 3_4:+77600580 None:intergenic
GATTTCAACGTCGGTGATGG+TGG 0.617438 3_4:+77600333 None:intergenic
TGATGGTGGTGACGGAAGAG+AGG 0.626472 3_4:+77600347 None:intergenic
TCAGACTCAGAGGCGTGAGT+GGG 0.627258 3_4:-77600539 Msa0524120:CDS
GACGCAATTGCTTCACACCG+CGG 0.639535 3_4:-77600632 Msa0524120:CDS
GAAATGCTTCAAGAATAATG+AGG 0.641725 3_4:-77600507 Msa0524120:CDS
CGATGGTATCAGTGCAGCCG+CGG 0.642361 3_4:+77600615 None:intergenic
CAGTTGGATTCATCAGTGAA+CGG 0.643319 3_4:-77598920 Msa0524120:CDS
CGCGGCTGCACTGATACCAT+CGG 0.650425 3_4:-77600614 Msa0524120:CDS
CTGAGTCTGAAATATAGTTG+CGG 0.652164 3_4:+77600552 None:intergenic
ATCAGCGGTGATTTCAACGT+CGG 0.653697 3_4:+77600324 None:intergenic
CAACTATATTTCAGACTCAG+AGG 0.662061 3_4:-77600549 Msa0524120:CDS
AATAAGAACCTGTAAATCAG+CGG 0.693763 3_4:+77600309 None:intergenic
CAAGGTGTGAGTGTGACCGA+TGG 0.717093 3_4:+77600598 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATATAGAAAAAAATATA+AGG + chr3_4:77599818-77599837 None:intergenic 10.0%
!! AACATATAGAAAAAAATATA+AGG + chr3_4:77599818-77599837 None:intergenic 10.0%
!! ATTAAATGAGAAAAATGAAA+AGG + chr3_4:77599318-77599337 None:intergenic 15.0%
!!! CATATTCGTTAATTTTAAAA+AGG - chr3_4:77600248-77600267 Msa0524120:intron 15.0%
!! TGCTTAAATATATAAAAGAA+TGG + chr3_4:77600385-77600404 None:intergenic 15.0%
!! ATTAAATGAGAAAAATGAAA+AGG + chr3_4:77599318-77599337 None:intergenic 15.0%
!!! CATATTCGTTAATTTTAAAA+AGG - chr3_4:77600248-77600267 Msa0524120:intron 15.0%
!! TGCTTAAATATATAAAAGAA+TGG + chr3_4:77600385-77600404 None:intergenic 15.0%
!! GAATTATCACACTATAAATT+CGG + chr3_4:77599210-77599229 None:intergenic 20.0%
!! GTCATGAAACAAAATAAATA+AGG + chr3_4:77599362-77599381 None:intergenic 20.0%
!!! ATATTTACCGTTTCTTTTTA+AGG - chr3_4:77599619-77599638 Msa0524120:intron 20.0%
!! TCATCAGGAAAATAAAAATA+AGG + chr3_4:77600128-77600147 None:intergenic 20.0%
!! AAGATAAAAAAAGATTTCAG+CGG + chr3_4:77600221-77600240 None:intergenic 20.0%
!! GAATTATCACACTATAAATT+CGG + chr3_4:77599210-77599229 None:intergenic 20.0%
!! GTCATGAAACAAAATAAATA+AGG + chr3_4:77599362-77599381 None:intergenic 20.0%
!!! ATATTTACCGTTTCTTTTTA+AGG - chr3_4:77599619-77599638 Msa0524120:intron 20.0%
!! TCATCAGGAAAATAAAAATA+AGG + chr3_4:77600128-77600147 None:intergenic 20.0%
!! AAGATAAAAAAAGATTTCAG+CGG + chr3_4:77600221-77600240 None:intergenic 20.0%
! AATAATGAGGATAAAGTGTA+TGG - chr3_4:77598972-77598991 Msa0524120:CDS 25.0%
! TTTATAGTGTGATAATTCAG+TGG - chr3_4:77599212-77599231 Msa0524120:intron 25.0%
! CTCATTTAATCTAGTGTATT+TGG - chr3_4:77599328-77599347 Msa0524120:intron 25.0%
! CAAAGAACCTTAAAAAGAAA+CGG + chr3_4:77599629-77599648 None:intergenic 25.0%
! TCTATCTACCATATATATGT+TGG - chr3_4:77599866-77599885 Msa0524120:intron 25.0%
! AGTGATACATAAGAATAAGA+TGG - chr3_4:77600006-77600025 Msa0524120:CDS 25.0%
!! TATTCAAACAATGCTTTTGA+GGG - chr3_4:77600072-77600091 Msa0524120:intron 25.0%
! TATATATTTAAGCAGCTTCT+TGG - chr3_4:77600391-77600410 Msa0524120:CDS 25.0%
! AATAATGAGGATAAAGTGTA+TGG - chr3_4:77598972-77598991 Msa0524120:CDS 25.0%
! TTTATAGTGTGATAATTCAG+TGG - chr3_4:77599212-77599231 Msa0524120:intron 25.0%
! CTCATTTAATCTAGTGTATT+TGG - chr3_4:77599328-77599347 Msa0524120:intron 25.0%
! CAAAGAACCTTAAAAAGAAA+CGG + chr3_4:77599629-77599648 None:intergenic 25.0%
! TCTATCTACCATATATATGT+TGG - chr3_4:77599866-77599885 Msa0524120:intron 25.0%
! AGTGATACATAAGAATAAGA+TGG - chr3_4:77600006-77600025 Msa0524120:CDS 25.0%
!! TATTCAAACAATGCTTTTGA+GGG - chr3_4:77600072-77600091 Msa0524120:intron 25.0%
! TATATATTTAAGCAGCTTCT+TGG - chr3_4:77600391-77600410 Msa0524120:CDS 25.0%
GAAATGCTTCAAGAATAATG+AGG - chr3_4:77598959-77598978 Msa0524120:CDS 30.0%
AAATGGTTGCCAAACAAATT+CGG - chr3_4:77599013-77599032 Msa0524120:intron 30.0%
AATAAGAACCTGTAAATCAG+CGG + chr3_4:77599160-77599179 None:intergenic 30.0%
TTATCACACTATAAATTCGG+CGG + chr3_4:77599207-77599226 None:intergenic 30.0%
AGAAAAATGAAAAGGCAATG+TGG + chr3_4:77599310-77599329 None:intergenic 30.0%
! TAACTCAACACTTTTAGTGT+AGG - chr3_4:77599411-77599430 Msa0524120:intron 30.0%
! AAGTTTGTGTTGTTCTGTTT+CGG - chr3_4:77599661-77599680 Msa0524120:intron 30.0%
AAGAACCATCTCATAATTGT+GGG + chr3_4:77599937-77599956 None:intergenic 30.0%
TAAGAACCATCTCATAATTG+TGG + chr3_4:77599938-77599957 None:intergenic 30.0%
ATTATGAGATGGTTCTTACT+AGG - chr3_4:77599940-77599959 Msa0524120:CDS 30.0%
! CTATTCAAACAATGCTTTTG+AGG - chr3_4:77600071-77600090 Msa0524120:intron 30.0%
! ATTCAAACAATGCTTTTGAG+GGG - chr3_4:77600073-77600092 Msa0524120:intron 30.0%
!! TTTTCCTGATGATGAAATTG+TGG - chr3_4:77600136-77600155 Msa0524120:intron 30.0%
! TTTCCTGATGATGAAATTGT+GGG - chr3_4:77600137-77600156 Msa0524120:intron 30.0%
TATCTAATATTGCAATGACC+TGG + chr3_4:77600485-77600504 None:intergenic 30.0%
CATAAATGATACCTTCTTCA+GGG + chr3_4:77600635-77600654 None:intergenic 30.0%
ACATAAATGATACCTTCTTC+AGG + chr3_4:77600636-77600655 None:intergenic 30.0%
!! TGAAGAAGGTATCATTTATG+TGG - chr3_4:77600635-77600654 Msa0524120:CDS 30.0%
GAAATGCTTCAAGAATAATG+AGG - chr3_4:77598959-77598978 Msa0524120:CDS 30.0%
AAATGGTTGCCAAACAAATT+CGG - chr3_4:77599013-77599032 Msa0524120:intron 30.0%
AATAAGAACCTGTAAATCAG+CGG + chr3_4:77599160-77599179 None:intergenic 30.0%
TTATCACACTATAAATTCGG+CGG + chr3_4:77599207-77599226 None:intergenic 30.0%
AGAAAAATGAAAAGGCAATG+TGG + chr3_4:77599310-77599329 None:intergenic 30.0%
! TAACTCAACACTTTTAGTGT+AGG - chr3_4:77599411-77599430 Msa0524120:intron 30.0%
! AAGTTTGTGTTGTTCTGTTT+CGG - chr3_4:77599661-77599680 Msa0524120:intron 30.0%
AAGAACCATCTCATAATTGT+GGG + chr3_4:77599937-77599956 None:intergenic 30.0%
TAAGAACCATCTCATAATTG+TGG + chr3_4:77599938-77599957 None:intergenic 30.0%
ATTATGAGATGGTTCTTACT+AGG - chr3_4:77599940-77599959 Msa0524120:CDS 30.0%
! CTATTCAAACAATGCTTTTG+AGG - chr3_4:77600071-77600090 Msa0524120:intron 30.0%
! ATTCAAACAATGCTTTTGAG+GGG - chr3_4:77600073-77600092 Msa0524120:intron 30.0%
!! TTTTCCTGATGATGAAATTG+TGG - chr3_4:77600136-77600155 Msa0524120:intron 30.0%
! TTTCCTGATGATGAAATTGT+GGG - chr3_4:77600137-77600156 Msa0524120:intron 30.0%
TATCTAATATTGCAATGACC+TGG + chr3_4:77600485-77600504 None:intergenic 30.0%
CATAAATGATACCTTCTTCA+GGG + chr3_4:77600635-77600654 None:intergenic 30.0%
ACATAAATGATACCTTCTTC+AGG + chr3_4:77600636-77600655 None:intergenic 30.0%
!! TGAAGAAGGTATCATTTATG+TGG - chr3_4:77600635-77600654 Msa0524120:CDS 30.0%
! CTGAGTCTGAAATATAGTTG+CGG + chr3_4:77598917-77598936 None:intergenic 35.0%
CAACTATATTTCAGACTCAG+AGG - chr3_4:77598917-77598936 Msa0524120:CDS 35.0%
! AAGTTCTCTCCGAATTTGTT+TGG + chr3_4:77599025-77599044 None:intergenic 35.0%
CTAGCAGTGCATTATATCAA+TGG - chr3_4:77599273-77599292 Msa0524120:intron 35.0%
! ACTTTTAGTGTAGGTCGTTA+GGG - chr3_4:77599420-77599439 Msa0524120:intron 35.0%
! AGGGTGTATGTATCTGTTTT+TGG - chr3_4:77599439-77599458 Msa0524120:intron 35.0%
!!! TCTGTTTTTGGAGATGAAAG+AGG - chr3_4:77599451-77599470 Msa0524120:intron 35.0%
!!! CTGTTTTTGGAGATGAAAGA+GGG - chr3_4:77599452-77599471 Msa0524120:intron 35.0%
AAATATGTTCGCAGTGAGTT+GGG - chr3_4:77599511-77599530 Msa0524120:intron 35.0%
CTTGAGTGAAAATTTGTGCT+GGG + chr3_4:77599730-77599749 None:intergenic 35.0%
ACTTGAGTGAAAATTTGTGC+TGG + chr3_4:77599731-77599750 None:intergenic 35.0%
TTAGTTCATCACTACGCATA+GGG - chr3_4:77599836-77599855 Msa0524120:intron 35.0%
AGAACCATCTCATAATTGTG+GGG + chr3_4:77599936-77599955 None:intergenic 35.0%
ATTAACCCACATAGCAACAA+GGG + chr3_4:77599966-77599985 None:intergenic 35.0%
CAAGAAATTGTCCATACAAG+AGG + chr3_4:77600049-77600068 None:intergenic 35.0%
AAACCCACAATTTCATCATC+AGG + chr3_4:77600143-77600162 None:intergenic 35.0%
GTTGTGAGCTGTTATTGATA+TGG - chr3_4:77600438-77600457 Msa0524120:CDS 35.0%
AATGACCTGGAAGTTTGAAT+GGG + chr3_4:77600472-77600491 None:intergenic 35.0%
GAGTGAAACAAGCAAAAACA+TGG - chr3_4:77600521-77600540 Msa0524120:CDS 35.0%
! CTGAGTCTGAAATATAGTTG+CGG + chr3_4:77598917-77598936 None:intergenic 35.0%
CAACTATATTTCAGACTCAG+AGG - chr3_4:77598917-77598936 Msa0524120:CDS 35.0%
! AAGTTCTCTCCGAATTTGTT+TGG + chr3_4:77599025-77599044 None:intergenic 35.0%
CTAGCAGTGCATTATATCAA+TGG - chr3_4:77599273-77599292 Msa0524120:intron 35.0%
! ACTTTTAGTGTAGGTCGTTA+GGG - chr3_4:77599420-77599439 Msa0524120:intron 35.0%
! AGGGTGTATGTATCTGTTTT+TGG - chr3_4:77599439-77599458 Msa0524120:intron 35.0%
!!! TCTGTTTTTGGAGATGAAAG+AGG - chr3_4:77599451-77599470 Msa0524120:intron 35.0%
!!! CTGTTTTTGGAGATGAAAGA+GGG - chr3_4:77599452-77599471 Msa0524120:intron 35.0%
AAATATGTTCGCAGTGAGTT+GGG - chr3_4:77599511-77599530 Msa0524120:intron 35.0%
CTTGAGTGAAAATTTGTGCT+GGG + chr3_4:77599730-77599749 None:intergenic 35.0%
ACTTGAGTGAAAATTTGTGC+TGG + chr3_4:77599731-77599750 None:intergenic 35.0%
TTAGTTCATCACTACGCATA+GGG - chr3_4:77599836-77599855 Msa0524120:intron 35.0%
AGAACCATCTCATAATTGTG+GGG + chr3_4:77599936-77599955 None:intergenic 35.0%
ATTAACCCACATAGCAACAA+GGG + chr3_4:77599966-77599985 None:intergenic 35.0%
CAAGAAATTGTCCATACAAG+AGG + chr3_4:77600049-77600068 None:intergenic 35.0%
AAACCCACAATTTCATCATC+AGG + chr3_4:77600143-77600162 None:intergenic 35.0%
GTTGTGAGCTGTTATTGATA+TGG - chr3_4:77600438-77600457 Msa0524120:CDS 35.0%
AATGACCTGGAAGTTTGAAT+GGG + chr3_4:77600472-77600491 None:intergenic 35.0%
GAGTGAAACAAGCAAAAACA+TGG - chr3_4:77600521-77600540 Msa0524120:CDS 35.0%
! TTCTTGAAGCATTTCCTGTG+AGG + chr3_4:77598954-77598973 None:intergenic 40.0%
TAAAGTGTATGGCGAATCCA+AGG - chr3_4:77598983-77599002 Msa0524120:CDS 40.0%
GAATCCAAGGAGAGTCAAAA+TGG - chr3_4:77598996-77599015 Msa0524120:intron 40.0%
GGCAAATTGCAAGACGTTAT+CGG + chr3_4:77599064-77599083 None:intergenic 40.0%
TAAGGAAGCTTCAGGAAGAA+CGG + chr3_4:77599085-77599104 None:intergenic 40.0%
!! TGAAATCACCGCTGATTTAC+AGG - chr3_4:77599149-77599168 Msa0524120:intron 40.0%
! CACTTTTAGTGTAGGTCGTT+AGG - chr3_4:77599419-77599438 Msa0524120:intron 40.0%
!! TTTTGGAGATGAAAGAGGGA+AGG - chr3_4:77599456-77599475 Msa0524120:intron 40.0%
!!! TTTTGATTTCAACCCAGCCA+TGG + chr3_4:77599488-77599507 None:intergenic 40.0%
CAACTCACTGCGAACATATT+TGG + chr3_4:77599512-77599531 None:intergenic 40.0%
CAAATATGTTCGCAGTGAGT+TGG - chr3_4:77599510-77599529 Msa0524120:intron 40.0%
AATATGTTCGCAGTGAGTTG+GGG - chr3_4:77599512-77599531 Msa0524120:intron 40.0%
! ATCCTCCAAAAAGCGTATCT+CGG + chr3_4:77599563-77599582 None:intergenic 40.0%
!! GAGGATGAATCTTTTGAGAG+AGG - chr3_4:77599577-77599596 Msa0524120:intron 40.0%
!! AATCTTTTGAGAGAGGAAGC+AGG - chr3_4:77599584-77599603 Msa0524120:intron 40.0%
!! ATCTTTTGAGAGAGGAAGCA+GGG - chr3_4:77599585-77599604 Msa0524120:intron 40.0%
AGTGAAAATTTGTGCTGGGA+AGG + chr3_4:77599726-77599745 None:intergenic 40.0%
!! CACTCAAGTTGTTTCTGTGT+TGG - chr3_4:77599742-77599761 Msa0524120:intron 40.0%
GTTAGTTCATCACTACGCAT+AGG - chr3_4:77599835-77599854 Msa0524120:intron 40.0%
CGGCAGTTCCAACATATATA+TGG + chr3_4:77599877-77599896 None:intergenic 40.0%
ACGGAATAAACTGTGACACA+CGG + chr3_4:77599897-77599916 None:intergenic 40.0%
TTTATTCCGTGATTTCCTGC+CGG - chr3_4:77599907-77599926 Msa0524120:CDS 40.0%
TCTCATAATTGTGGGGAAAC+CGG + chr3_4:77599929-77599948 None:intergenic 40.0%
GTTTCCCCACAATTATGAGA+TGG - chr3_4:77599929-77599948 Msa0524120:CDS 40.0%
CATTAACCCACATAGCAACA+AGG + chr3_4:77599967-77599986 None:intergenic 40.0%
! GATTTTCACTGCCTCTTGTA+TGG - chr3_4:77600035-77600054 Msa0524120:CDS 40.0%
CAATGACCTGGAAGTTTGAA+TGG + chr3_4:77600473-77600492 None:intergenic 40.0%
AAGCAAAAACATGGAGCAGT+TGG - chr3_4:77600530-77600549 Msa0524120:CDS 40.0%
CAGTTGGATTCATCAGTGAA+CGG - chr3_4:77600546-77600565 Msa0524120:CDS 40.0%
! AGATGAAGACGATGCTGATT+GGG - chr3_4:77600599-77600618 Msa0524120:CDS 40.0%
! TTCTTGAAGCATTTCCTGTG+AGG + chr3_4:77598954-77598973 None:intergenic 40.0%
TAAAGTGTATGGCGAATCCA+AGG - chr3_4:77598983-77599002 Msa0524120:CDS 40.0%
GAATCCAAGGAGAGTCAAAA+TGG - chr3_4:77598996-77599015 Msa0524120:intron 40.0%
GGCAAATTGCAAGACGTTAT+CGG + chr3_4:77599064-77599083 None:intergenic 40.0%
TAAGGAAGCTTCAGGAAGAA+CGG + chr3_4:77599085-77599104 None:intergenic 40.0%
!! TGAAATCACCGCTGATTTAC+AGG - chr3_4:77599149-77599168 Msa0524120:intron 40.0%
! CACTTTTAGTGTAGGTCGTT+AGG - chr3_4:77599419-77599438 Msa0524120:intron 40.0%
!! TTTTGGAGATGAAAGAGGGA+AGG - chr3_4:77599456-77599475 Msa0524120:intron 40.0%
!!! TTTTGATTTCAACCCAGCCA+TGG + chr3_4:77599488-77599507 None:intergenic 40.0%
CAACTCACTGCGAACATATT+TGG + chr3_4:77599512-77599531 None:intergenic 40.0%
CAAATATGTTCGCAGTGAGT+TGG - chr3_4:77599510-77599529 Msa0524120:intron 40.0%
AATATGTTCGCAGTGAGTTG+GGG - chr3_4:77599512-77599531 Msa0524120:intron 40.0%
! ATCCTCCAAAAAGCGTATCT+CGG + chr3_4:77599563-77599582 None:intergenic 40.0%
!! GAGGATGAATCTTTTGAGAG+AGG - chr3_4:77599577-77599596 Msa0524120:intron 40.0%
!! AATCTTTTGAGAGAGGAAGC+AGG - chr3_4:77599584-77599603 Msa0524120:intron 40.0%
!! ATCTTTTGAGAGAGGAAGCA+GGG - chr3_4:77599585-77599604 Msa0524120:intron 40.0%
AGTGAAAATTTGTGCTGGGA+AGG + chr3_4:77599726-77599745 None:intergenic 40.0%
!! CACTCAAGTTGTTTCTGTGT+TGG - chr3_4:77599742-77599761 Msa0524120:intron 40.0%
GTTAGTTCATCACTACGCAT+AGG - chr3_4:77599835-77599854 Msa0524120:intron 40.0%
CGGCAGTTCCAACATATATA+TGG + chr3_4:77599877-77599896 None:intergenic 40.0%
ACGGAATAAACTGTGACACA+CGG + chr3_4:77599897-77599916 None:intergenic 40.0%
TTTATTCCGTGATTTCCTGC+CGG - chr3_4:77599907-77599926 Msa0524120:CDS 40.0%
TCTCATAATTGTGGGGAAAC+CGG + chr3_4:77599929-77599948 None:intergenic 40.0%
GTTTCCCCACAATTATGAGA+TGG - chr3_4:77599929-77599948 Msa0524120:CDS 40.0%
CATTAACCCACATAGCAACA+AGG + chr3_4:77599967-77599986 None:intergenic 40.0%
! GATTTTCACTGCCTCTTGTA+TGG - chr3_4:77600035-77600054 Msa0524120:CDS 40.0%
CAATGACCTGGAAGTTTGAA+TGG + chr3_4:77600473-77600492 None:intergenic 40.0%
AAGCAAAAACATGGAGCAGT+TGG - chr3_4:77600530-77600549 Msa0524120:CDS 40.0%
CAGTTGGATTCATCAGTGAA+CGG - chr3_4:77600546-77600565 Msa0524120:CDS 40.0%
! AGATGAAGACGATGCTGATT+GGG - chr3_4:77600599-77600618 Msa0524120:CDS 40.0%
CGATTGTTACATCGCCAACA+AGG + chr3_4:77598889-77598908 None:intergenic 45.0%
!!! GCAACCATTTTGACTCTCCT+TGG + chr3_4:77599003-77599022 None:intergenic 45.0%
GTTCTTCCTGAAGCTTCCTT+AGG - chr3_4:77599084-77599103 Msa0524120:intron 45.0%
GAGGTAAGAATCAGCACCTA+AGG + chr3_4:77599103-77599122 None:intergenic 45.0%
ATCAGCGGTGATTTCAACGT+CGG + chr3_4:77599145-77599164 None:intergenic 45.0%
GGCGGCGAAAATGATAGAAT+AGG + chr3_4:77599189-77599208 None:intergenic 45.0%
ATGACTGTCATGTAACGCTG+TGG - chr3_4:77599377-77599396 Msa0524120:intron 45.0%
AGATGAAAGAGGGAAGGAAG+TGG - chr3_4:77599462-77599481 Msa0524120:intron 45.0%
! AACTCCCGAGATACGCTTTT+TGG - chr3_4:77599555-77599574 Msa0524120:intron 45.0%
! TCCTCCAAAAAGCGTATCTC+GGG + chr3_4:77599562-77599581 None:intergenic 45.0%
! GTGTTGTTCTGTTTCGGCTT+TGG - chr3_4:77599667-77599686 Msa0524120:intron 45.0%
CAAGAAACTGAGAGATGGTC+CGG + chr3_4:77599699-77599718 None:intergenic 45.0%
GAGGTCAAGAAACTGAGAGA+TGG + chr3_4:77599704-77599723 None:intergenic 45.0%
GAAAATTTGTGCTGGGAAGG+AGG + chr3_4:77599723-77599742 None:intergenic 45.0%
!! AACAATGCTTTTGAGGGGAG+AGG - chr3_4:77600078-77600097 Msa0524120:intron 45.0%
!! ACAATGCTTTTGAGGGGAGA+GGG - chr3_4:77600079-77600098 Msa0524120:intron 45.0%
TTGTGGGTTTCACATCACTG+TGG - chr3_4:77600153-77600172 Msa0524120:intron 45.0%
CAGATGAAGACGATGCTGAT+TGG - chr3_4:77600598-77600617 Msa0524120:CDS 45.0%
GAAGATGAAGACCCTGAAGA+AGG - chr3_4:77600621-77600640 Msa0524120:CDS 45.0%
CGATTGTTACATCGCCAACA+AGG + chr3_4:77598889-77598908 None:intergenic 45.0%
!!! GCAACCATTTTGACTCTCCT+TGG + chr3_4:77599003-77599022 None:intergenic 45.0%
GTTCTTCCTGAAGCTTCCTT+AGG - chr3_4:77599084-77599103 Msa0524120:intron 45.0%
GAGGTAAGAATCAGCACCTA+AGG + chr3_4:77599103-77599122 None:intergenic 45.0%
ATCAGCGGTGATTTCAACGT+CGG + chr3_4:77599145-77599164 None:intergenic 45.0%
GGCGGCGAAAATGATAGAAT+AGG + chr3_4:77599189-77599208 None:intergenic 45.0%
ATGACTGTCATGTAACGCTG+TGG - chr3_4:77599377-77599396 Msa0524120:intron 45.0%
AGATGAAAGAGGGAAGGAAG+TGG - chr3_4:77599462-77599481 Msa0524120:intron 45.0%
! AACTCCCGAGATACGCTTTT+TGG - chr3_4:77599555-77599574 Msa0524120:intron 45.0%
! TCCTCCAAAAAGCGTATCTC+GGG + chr3_4:77599562-77599581 None:intergenic 45.0%
! GTGTTGTTCTGTTTCGGCTT+TGG - chr3_4:77599667-77599686 Msa0524120:intron 45.0%
CAAGAAACTGAGAGATGGTC+CGG + chr3_4:77599699-77599718 None:intergenic 45.0%
GAGGTCAAGAAACTGAGAGA+TGG + chr3_4:77599704-77599723 None:intergenic 45.0%
GAAAATTTGTGCTGGGAAGG+AGG + chr3_4:77599723-77599742 None:intergenic 45.0%
!! AACAATGCTTTTGAGGGGAG+AGG - chr3_4:77600078-77600097 Msa0524120:intron 45.0%
!! ACAATGCTTTTGAGGGGAGA+GGG - chr3_4:77600079-77600098 Msa0524120:intron 45.0%
TTGTGGGTTTCACATCACTG+TGG - chr3_4:77600153-77600172 Msa0524120:intron 45.0%
CAGATGAAGACGATGCTGAT+TGG - chr3_4:77600598-77600617 Msa0524120:CDS 45.0%
GAAGATGAAGACCCTGAAGA+AGG - chr3_4:77600621-77600640 Msa0524120:CDS 45.0%
TCAGCACCTAAGGAAGCTTC+AGG + chr3_4:77599093-77599112 None:intergenic 50.0%
! GATTTCAACGTCGGTGATGG+TGG + chr3_4:77599136-77599155 None:intergenic 50.0%
GGTGATTTCAACGTCGGTGA+TGG + chr3_4:77599139-77599158 None:intergenic 50.0%
!! TCCCGAGATACGCTTTTTGG+AGG - chr3_4:77599558-77599577 Msa0524120:intron 50.0%
ACTGAGAGATGGTCCGGAAA+GGG + chr3_4:77599693-77599712 None:intergenic 50.0%
AACTGAGAGATGGTCCGGAA+AGG + chr3_4:77599694-77599713 None:intergenic 50.0%
ATAATTGTGGGGAAACCGGC+AGG + chr3_4:77599925-77599944 None:intergenic 50.0%
ACTAGGCCCTTGTTGCTATG+TGG - chr3_4:77599957-77599976 Msa0524120:CDS 50.0%
CTAGGCCCTTGTTGCTATGT+GGG - chr3_4:77599958-77599977 Msa0524120:CDS 50.0%
!! GCATAAGTGAGCACTGGCTA+TGG + chr3_4:77600359-77600378 None:intergenic 50.0%
TTCCGCCCATTCAAACTTCC+AGG - chr3_4:77600464-77600483 Msa0524120:CDS 50.0%
GACCTGGAAGTTTGAATGGG+CGG + chr3_4:77600469-77600488 None:intergenic 50.0%
TCAGCACCTAAGGAAGCTTC+AGG + chr3_4:77599093-77599112 None:intergenic 50.0%
! GATTTCAACGTCGGTGATGG+TGG + chr3_4:77599136-77599155 None:intergenic 50.0%
GGTGATTTCAACGTCGGTGA+TGG + chr3_4:77599139-77599158 None:intergenic 50.0%
!! TCCCGAGATACGCTTTTTGG+AGG - chr3_4:77599558-77599577 Msa0524120:intron 50.0%
ACTGAGAGATGGTCCGGAAA+GGG + chr3_4:77599693-77599712 None:intergenic 50.0%
AACTGAGAGATGGTCCGGAA+AGG + chr3_4:77599694-77599713 None:intergenic 50.0%
ATAATTGTGGGGAAACCGGC+AGG + chr3_4:77599925-77599944 None:intergenic 50.0%
ACTAGGCCCTTGTTGCTATG+TGG - chr3_4:77599957-77599976 Msa0524120:CDS 50.0%
CTAGGCCCTTGTTGCTATGT+GGG - chr3_4:77599958-77599977 Msa0524120:CDS 50.0%
!! GCATAAGTGAGCACTGGCTA+TGG + chr3_4:77600359-77600378 None:intergenic 50.0%
TTCCGCCCATTCAAACTTCC+AGG - chr3_4:77600464-77600483 Msa0524120:CDS 50.0%
GACCTGGAAGTTTGAATGGG+CGG + chr3_4:77600469-77600488 None:intergenic 50.0%
GACGCAATTGCTTCACACCG+CGG - chr3_4:77598834-77598853 Msa0524120:CDS 55.0%
CAAGGTGTGAGTGTGACCGA+TGG + chr3_4:77598871-77598890 None:intergenic 55.0%
CGGTCACACTCACACCTTGT+TGG - chr3_4:77598872-77598891 Msa0524120:CDS 55.0%
! TTCAGACTCAGAGGCGTGAG+TGG - chr3_4:77598926-77598945 Msa0524120:CDS 55.0%
! TCAGACTCAGAGGCGTGAGT+GGG - chr3_4:77598927-77598946 Msa0524120:CDS 55.0%
!! TGATGGTGGTGACGGAAGAG+AGG + chr3_4:77599122-77599141 None:intergenic 55.0%
!! AACGTCGGTGATGGTGGTGA+CGG + chr3_4:77599130-77599149 None:intergenic 55.0%
CTGTCATGTAACGCTGTGGC+TGG - chr3_4:77599381-77599400 Msa0524120:intron 55.0%
AAGAGGGAAGGAAGTGGCCA+TGG - chr3_4:77599468-77599487 Msa0524120:intron 55.0%
! ATGTTCGCAGTGAGTTGGGG+AGG - chr3_4:77599515-77599534 Msa0524120:intron 55.0%
! TGGGGAGGCGTATGAAGTTG+CGG - chr3_4:77599530-77599549 Msa0524120:intron 55.0%
! GTTTCGGCTTTGGCCCTTTC+CGG - chr3_4:77599677-77599696 Msa0524120:intron 55.0%
GGGAAACCGGCAGGAAATCA+CGG + chr3_4:77599916-77599935 None:intergenic 55.0%
!! ATGCTTTTGAGGGGAGAGGG+TGG - chr3_4:77600082-77600101 Msa0524120:intron 55.0%
!! TGCTTTTGAGGGGAGAGGGT+GGG - chr3_4:77600083-77600102 Msa0524120:intron 55.0%
TGGCGTGCATAAGTGAGCAC+TGG + chr3_4:77600365-77600384 None:intergenic 55.0%
GACGCAATTGCTTCACACCG+CGG - chr3_4:77598834-77598853 Msa0524120:CDS 55.0%
CAAGGTGTGAGTGTGACCGA+TGG + chr3_4:77598871-77598890 None:intergenic 55.0%
CGGTCACACTCACACCTTGT+TGG - chr3_4:77598872-77598891 Msa0524120:CDS 55.0%
! TTCAGACTCAGAGGCGTGAG+TGG - chr3_4:77598926-77598945 Msa0524120:CDS 55.0%
! TCAGACTCAGAGGCGTGAGT+GGG - chr3_4:77598927-77598946 Msa0524120:CDS 55.0%
!! TGATGGTGGTGACGGAAGAG+AGG + chr3_4:77599122-77599141 None:intergenic 55.0%
!! AACGTCGGTGATGGTGGTGA+CGG + chr3_4:77599130-77599149 None:intergenic 55.0%
CTGTCATGTAACGCTGTGGC+TGG - chr3_4:77599381-77599400 Msa0524120:intron 55.0%
AAGAGGGAAGGAAGTGGCCA+TGG - chr3_4:77599468-77599487 Msa0524120:intron 55.0%
! ATGTTCGCAGTGAGTTGGGG+AGG - chr3_4:77599515-77599534 Msa0524120:intron 55.0%
! TGGGGAGGCGTATGAAGTTG+CGG - chr3_4:77599530-77599549 Msa0524120:intron 55.0%
! GTTTCGGCTTTGGCCCTTTC+CGG - chr3_4:77599677-77599696 Msa0524120:intron 55.0%
GGGAAACCGGCAGGAAATCA+CGG + chr3_4:77599916-77599935 None:intergenic 55.0%
!! ATGCTTTTGAGGGGAGAGGG+TGG - chr3_4:77600082-77600101 Msa0524120:intron 55.0%
!! TGCTTTTGAGGGGAGAGGGT+GGG - chr3_4:77600083-77600102 Msa0524120:intron 55.0%
TGGCGTGCATAAGTGAGCAC+TGG + chr3_4:77600365-77600384 None:intergenic 55.0%
CGATGGTATCAGTGCAGCCG+CGG + chr3_4:77598854-77598873 None:intergenic 60.0%
! CGCGGCTGCACTGATACCAT+CGG - chr3_4:77598852-77598871 Msa0524120:CDS 60.0%
GGAAGGAAGTGGCCATGGCT+GGG - chr3_4:77599473-77599492 Msa0524120:intron 60.0%
! AGGGGAGAGGGTGGGTTCTT+TGG - chr3_4:77600091-77600110 Msa0524120:intron 60.0%
CGATGGTATCAGTGCAGCCG+CGG + chr3_4:77598854-77598873 None:intergenic 60.0%
! CGCGGCTGCACTGATACCAT+CGG - chr3_4:77598852-77598871 Msa0524120:CDS 60.0%
GGAAGGAAGTGGCCATGGCT+GGG - chr3_4:77599473-77599492 Msa0524120:intron 60.0%
! AGGGGAGAGGGTGGGTTCTT+TGG - chr3_4:77600091-77600110 Msa0524120:intron 60.0%
AGGCGTGAGTGGGTCCTCAC+AGG - chr3_4:77598937-77598956 Msa0524120:CDS 65.0%
GGGAAGGAAGTGGCCATGGC+TGG - chr3_4:77599472-77599491 Msa0524120:intron 65.0%
AGGCGTGAGTGGGTCCTCAC+AGG - chr3_4:77598937-77598956 Msa0524120:CDS 65.0%
GGGAAGGAAGTGGCCATGGC+TGG - chr3_4:77599472-77599491 Msa0524120:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 77598826 77600662 77598826 ID=Msa0524120;Name=Msa0524120
chr3_4 mRNA 77598826 77600662 77598826 ID=Msa0524120-mRNA-1;Parent=Msa0524120;Name=Msa0524120-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|231
chr3_4 exon 77600318 77600662 77600318 ID=Msa0524120-mRNA-1:exon:22781;Parent=Msa0524120-mRNA-1
chr3_4 exon 77599882 77600055 77599882 ID=Msa0524120-mRNA-1:exon:22780;Parent=Msa0524120-mRNA-1
chr3_4 exon 77598826 77599002 77598826 ID=Msa0524120-mRNA-1:exon:22779;Parent=Msa0524120-mRNA-1
chr3_4 CDS 77600318 77600662 77600318 ID=Msa0524120-mRNA-1:cds;Parent=Msa0524120-mRNA-1
chr3_4 CDS 77599882 77600055 77599882 ID=Msa0524120-mRNA-1:cds;Parent=Msa0524120-mRNA-1
chr3_4 CDS 77598826 77599002 77598826 ID=Msa0524120-mRNA-1:cds;Parent=Msa0524120-mRNA-1
Gene Sequence

>Msa0524120

ATGAGCACGACGCAATTGCTTCACACCGCGGCTGCACTGATACCATCGGTCACACTCACACCTTGTTGGCGATGTAACAATCGCACAACCGCAACTATATTTCAGACTCAGAGGCGTGAGTGGGTCCTCACAGGAAATGCTTCAAGAATAATGAGGATAAAGTGTATGGCGAATCCAAGGAGAGTCAAAATGGTTGCCAAACAAATTCGGAGAGAACTTTCTGATATGCTCATCACCGATAACGTCTTGCAATTTGCCGTTCTTCCTGAAGCTTCCTTAGGTGCTGATTCTTACCTCTCTTCCGTCACCACCATCACCGACGTTGAAATCACCGCTGATTTACAGGTCGTTAGGGTGTATGTATCTGTTTTTGGAGATGAAAGAGGGAAGGAAGTGGCCATGGCTGGGTTGAAATCAAAAGCCAAATATGTTCGCAGTGAGTTGGGGAGGCGTATGAAGTTGCGGTTAACTCCCGAGATACGCTTTTTGGAGGATGAATCTTTTGAGAGAGGAAGCAGGGTCATTGCAATATTAGATAAAATTAAGAATGAGAAGAGTGAAACAAGCAAAAACATGGAGCAGTTGGATTCATCAGTGAACGGAGATGACACTGAGCAGTTGAATTCATCATCAGATGAAGACGATGCTGATTGGGAAGATGAAGACCCTGAAGAAGGTATCATTTATGTGGAATAG

Protein sequence

>Msa0524120

MSTTQLLHTAAALIPSVTLTPCWRCNNRTTATIFQTQRREWVLTGNASRIMRIKCMANPRRVKMVAKQIRRELSDMLITDNVLQFAVLPEASLGADSYLSSVTTITDVEITADLQVVRVYVSVFGDERGKEVAMAGLKSKAKYVRSELGRRMKLRLTPEIRFLEDESFERGSRVIAILDKIKNEKSETSKNMEQLDSSVNGDDTEQLNSSSDEDDADWEDEDPEEGIIYVE*