Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538760 | XP_003605398.2 | 94.143 | 461 | 19 | 1 | 1 | 453 | 468 | 928 | 0.0 | 857 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538760 | sp|F4I313|SCY2A_ARATH | 51.695 | 472 | 182 | 11 | 1 | 452 | 468 | 913 | 1.12e-133 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538760 | G7JKS9 | 94.143 | 461 | 19 | 1 | 1 | 453 | 468 | 928 | 0.0 | 857 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0143970 | Msa0538760 | -0.804542 | 2.054602e-49 | -8.615850e-47 |
| Msa0218650 | Msa0538760 | 0.803204 | 3.898330e-49 | -8.615850e-47 |
| Msa0223390 | Msa0538760 | -0.806852 | 6.724969e-50 | -8.615850e-47 |
| Msa0378340 | Msa0538760 | -0.801874 | 7.329669e-49 | -8.615850e-47 |
| Msa0380310 | Msa0538760 | -0.805177 | 1.513888e-49 | -8.615850e-47 |
| Msa0427690 | Msa0538760 | -0.801778 | 7.668993e-49 | -8.615850e-47 |
| Msa0518520 | Msa0538760 | -0.803159 | 3.981075e-49 | -8.615850e-47 |
| Msa0538760 | Msa0578070 | 0.807894 | 4.044667e-50 | -8.615850e-47 |
| Msa0538760 | Msa0634510 | 0.877069 | 8.440850e-69 | -8.615850e-47 |
| Msa0538760 | Msa0730180 | -0.801425 | 9.060258e-49 | -8.615850e-47 |
| Msa0538760 | Msa1284030 | -0.816773 | 4.653181e-52 | -8.615850e-47 |
| Msa0538760 | Msa1323060 | -0.804662 | 1.940209e-49 | -8.615850e-47 |
| Msa0538760 | Msa1376640 | -0.805892 | 1.071595e-49 | -8.615850e-47 |
| Msa0538760 | Msa1382720 | -0.806063 | 9.868979e-50 | -8.615850e-47 |
| Msa0538760 | Msa1405770 | -0.805030 | 1.625091e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538760 | MtrunA17_Chr4g0013741 | 93.939 | 462 | 19 | 2 | 1 | 453 | 468 | 929 | 0.0 | 852 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538760 | AT1G22870.2 | 51.695 | 472 | 182 | 11 | 1 | 452 | 247 | 692 | 6.01e-137 | 409 |
| Msa0538760 | AT1G22870.3 | 51.695 | 472 | 182 | 11 | 1 | 452 | 303 | 748 | 2.41e-136 | 410 |
| Msa0538760 | AT1G22870.1 | 51.695 | 472 | 182 | 11 | 1 | 452 | 468 | 913 | 1.14e-134 | 410 |
| Msa0538760 | AT1G71410.1 | 51.739 | 460 | 196 | 9 | 1 | 452 | 468 | 909 | 2.53e-133 | 406 |
| Msa0538760 | AT1G71410.2 | 51.739 | 460 | 196 | 9 | 1 | 452 | 468 | 909 | 2.53e-133 | 406 |
| Msa0538760 | AT1G22870.4 | 53.315 | 362 | 139 | 6 | 1 | 352 | 468 | 809 | 2.28e-118 | 365 |
Find 127 sgRNAs with CRISPR-Local
Find 313 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATAGACTCCACAGAATTT+TGG | 0.144459 | 4_1:-18421974 | None:intergenic |
| CTTGACAAAGAGCATATATT+TGG | 0.211975 | 4_1:-18421231 | None:intergenic |
| AATTCCAACAATGGTATTTC+AGG | 0.220096 | 4_1:+18421861 | Msa0538760:CDS |
| CACTGAGCAGCCACCCCTTT+TGG | 0.226191 | 4_1:+18422286 | Msa0538760:CDS |
| CTTCTCTTGGGATGCAGATT+GGG | 0.235573 | 4_1:+18421533 | Msa0538760:CDS |
| TCTGGTCTTACCTCACAATT+TGG | 0.249950 | 4_1:+18421720 | Msa0538760:CDS |
| TAGATGTATTAATAGAATTC+TGG | 0.257450 | 4_1:-18421587 | None:intergenic |
| GGAGTTGCTGTGACTGATTC+TGG | 0.265135 | 4_1:+18421417 | Msa0538760:CDS |
| CACCTGGGTATCAAGTTCTT+TGG | 0.281777 | 4_1:-18418600 | None:intergenic |
| TGGCCGCCTCGTGCATCTTC+TGG | 0.283391 | 4_1:+18421702 | Msa0538760:CDS |
| GAAGAACATGTGAAATTAAA+TGG | 0.302392 | 4_1:-18418502 | None:intergenic |
| TTGGCGGGGCCCGTTGCTTT+AGG | 0.304433 | 4_1:-18421558 | None:intergenic |
| TTTGAACCTCAGAGTTCTCT+TGG | 0.315441 | 4_1:+18422047 | Msa0538760:CDS |
| AGAGGGCGGGGAAGAGGCAG+AGG | 0.321338 | 4_1:+18422224 | Msa0538760:CDS |
| ATCTACTGAAGGACATGAAT+TGG | 0.341032 | 4_1:-18421673 | None:intergenic |
| GCTTCTCTTGGGATGCAGAT+TGG | 0.355593 | 4_1:+18421532 | Msa0538760:CDS |
| CCTCTACCCACTGTGGTTGA+AGG | 0.358197 | 4_1:-18422206 | None:intergenic |
| TCCTGCAGTTAACGGCCTTC+AGG | 0.362743 | 4_1:+18421461 | Msa0538760:CDS |
| GAATAGTTTGCAAGATTTCC+AGG | 0.366270 | 4_1:-18420936 | None:intergenic |
| CAACCCTTATGTGTACCCTT+GGG | 0.366688 | 4_1:+18420989 | Msa0538760:CDS |
| GTGGGTAGAGGGCGGGGAAG+AGG | 0.367494 | 4_1:+18422218 | Msa0538760:CDS |
| CTTGGCAGACCAATTGTTGC+TGG | 0.367793 | 4_1:-18421949 | None:intergenic |
| AATGTTAAATCAACTGATCT+TGG | 0.377809 | 4_1:+18422128 | Msa0538760:CDS |
| CGCCCTAGTGGTTCATTATC+CGG | 0.389618 | 4_1:+18421828 | Msa0538760:CDS |
| CAGACCAATTGTTGCTGGCC+TGG | 0.396129 | 4_1:-18421944 | None:intergenic |
| AATAGAATTCTGGACAGAAT+TGG | 0.402583 | 4_1:-18421577 | None:intergenic |
| GGTTCATTATCCGGTGCATC+TGG | 0.404706 | 4_1:+18421837 | Msa0538760:CDS |
| GTCTCCAGGCCAGCAACAAT+TGG | 0.407124 | 4_1:+18421940 | Msa0538760:CDS |
| ACATCTAATAAATCTATGAT+AGG | 0.407258 | 4_1:+18421603 | Msa0538760:CDS |
| ACAAGCAATTCAAGCAATCT+TGG | 0.407775 | 4_1:+18421918 | Msa0538760:CDS |
| TGCAAGTTGTTCATTCTTGT+TGG | 0.408006 | 4_1:-18422165 | None:intergenic |
| CAACCCCAAGGGTACACATA+AGG | 0.408326 | 4_1:-18420993 | None:intergenic |
| CATTCCTGAAATACCATTGT+TGG | 0.413881 | 4_1:-18421865 | None:intergenic |
| GGAATGGCATTAAACAAGAT+AGG | 0.419727 | 4_1:+18421882 | Msa0538760:CDS |
| ATAGATGAGCTAGCATTCCT+TGG | 0.421853 | 4_1:-18422005 | None:intergenic |
| AGGATCATCATCTTCAAGAT+TGG | 0.428641 | 4_1:-18421787 | None:intergenic |
| ACGTGAATCATTATCATCAT+AGG | 0.429078 | 4_1:-18418540 | None:intergenic |
| TCATAGGCTCGAACAATCAT+TGG | 0.434291 | 4_1:-18418524 | None:intergenic |
| GAGGTTCAAAGCCATTGTTC+AGG | 0.439568 | 4_1:-18422034 | None:intergenic |
| CTCTACCCACTGTGGTTGAA+GGG | 0.439883 | 4_1:-18422205 | None:intergenic |
| TGGGTTCTTGAAACAAAGTC+AGG | 0.443828 | 4_1:+18422067 | Msa0538760:CDS |
| TTGAACCTCAGAGTTCTCTT+GGG | 0.445956 | 4_1:+18422048 | Msa0538760:CDS |
| CCAACCCTTATGTGTACCCT+TGG | 0.446020 | 4_1:+18420988 | Msa0538760:CDS |
| CTTGGTATGAGAGTGCTGTC+TGG | 0.450433 | 4_1:-18422258 | None:intergenic |
| AACATTCCGTGTTGAATGCT+CGG | 0.456832 | 4_1:+18422363 | Msa0538760:three_prime_UTR |
| ACGGTGCTGCTGGTTGTCCT+TGG | 0.458909 | 4_1:-18421492 | None:intergenic |
| AAACTATCTCCTGCAGTTAA+CGG | 0.459043 | 4_1:+18421453 | Msa0538760:CDS |
| TTCAAGCAATCTTGGTCTCC+AGG | 0.459052 | 4_1:+18421926 | Msa0538760:CDS |
| CATTCAGCTGTTGAGCAGTC+AGG | 0.461966 | 4_1:-18421196 | None:intergenic |
| GATTGGGGTCCTAAAGCAAC+GGG | 0.466852 | 4_1:+18421549 | Msa0538760:CDS |
| TTCAAGATTGGATGTGGATG+AGG | 0.470079 | 4_1:-18421775 | None:intergenic |
| ACCACAGTGGGTAGAGGGCG+GGG | 0.480384 | 4_1:+18422212 | Msa0538760:CDS |
| CTCGGAGACATTTGCTGTGA+AGG | 0.484862 | 4_1:+18422381 | Msa0538760:three_prime_UTR |
| AACCACAGTGGGTAGAGGGC+GGG | 0.487860 | 4_1:+18422211 | Msa0538760:CDS |
| CCTTCAACCACAGTGGGTAG+AGG | 0.497028 | 4_1:+18422206 | Msa0538760:CDS |
| AACCCCAAGGGTACACATAA+GGG | 0.498164 | 4_1:-18420992 | None:intergenic |
| TTCTCTTGGGATGCAGATTG+GGG | 0.498334 | 4_1:+18421534 | Msa0538760:CDS |
| GTTACCCCAACAAATCCAAA+AGG | 0.498720 | 4_1:-18422301 | None:intergenic |
| CAACAATGGTATTTCAGGAA+TGG | 0.499806 | 4_1:+18421866 | Msa0538760:CDS |
| CAAAATTCTGTGGAGTCTAT+CGG | 0.499919 | 4_1:+18421975 | Msa0538760:CDS |
| ACCTGAAGGCCGTTAACTGC+AGG | 0.504180 | 4_1:-18421462 | None:intergenic |
| TGATTCACGTTTACAAGAAG+AGG | 0.505008 | 4_1:+18418553 | Msa0538760:CDS |
| TGGCTGCTCAGTGCTTGACT+TGG | 0.506533 | 4_1:-18422276 | None:intergenic |
| TGTTGAAGCAACGGTGCTGC+TGG | 0.506869 | 4_1:-18421502 | None:intergenic |
| TCCTTGGAGCTTCCACCTGA+AGG | 0.508716 | 4_1:-18421476 | None:intergenic |
| CACAATTTGGTGATACTGAA+AGG | 0.517575 | 4_1:+18421733 | Msa0538760:CDS |
| ATCATCTTCAAGATTGGATG+TGG | 0.518956 | 4_1:-18421781 | None:intergenic |
| ACTTGATAAACATGCTGTCC+TGG | 0.519009 | 4_1:+18420918 | Msa0538760:CDS |
| CGTGGAGGCCAATCAGCAAA+AGG | 0.525518 | 4_1:-18421807 | None:intergenic |
| TAGATGAGCTAGCATTCCTT+GGG | 0.527101 | 4_1:-18422004 | None:intergenic |
| GTCAGGAGTGGCATAAGCAA+TGG | 0.528064 | 4_1:-18421179 | None:intergenic |
| ATGGATGTTACTTGACCCAC+AGG | 0.532744 | 4_1:-18421630 | None:intergenic |
| GGGTATCAAGTTCTTTGGCA+AGG | 0.533522 | 4_1:-18418595 | None:intergenic |
| GTCGGTTGACCATGTCTCCT+AGG | 0.533647 | 4_1:-18420897 | None:intergenic |
| AACCCTTATGTGTACCCTTG+GGG | 0.539200 | 4_1:+18420990 | Msa0538760:CDS |
| GAAAGGAAAACAGTTGCAGC+TGG | 0.543442 | 4_1:+18421750 | Msa0538760:CDS |
| AAATAGAATTTGCAACCCCA+AGG | 0.546112 | 4_1:-18421005 | None:intergenic |
| TTACCCCAACAAATCCAAAA+GGG | 0.549849 | 4_1:-18422300 | None:intergenic |
| TCTACCCACTGTGGTTGAAG+GGG | 0.551211 | 4_1:-18422204 | None:intergenic |
| GAATGGCATTAAACAAGATA+GGG | 0.554755 | 4_1:+18421883 | Msa0538760:CDS |
| TGCAGTTAACGGCCTTCAGG+TGG | 0.554887 | 4_1:+18421464 | Msa0538760:CDS |
| CTTCAACCACAGTGGGTAGA+GGG | 0.556677 | 4_1:+18422207 | Msa0538760:CDS |
| AGGGTACACATAAGGGTTGG+AGG | 0.558649 | 4_1:-18420985 | None:intergenic |
| GGTATCAAGTTCTTTGGCAA+GGG | 0.560592 | 4_1:-18418594 | None:intergenic |
| GTTGGAATTTCCAGATGCAC+CGG | 0.560597 | 4_1:-18421847 | None:intergenic |
| TTTGCTTTGCCTAGGAGACA+TGG | 0.560638 | 4_1:+18420888 | Msa0538760:CDS |
| AGAATTCTGGACAGAATTGG+CGG | 0.561941 | 4_1:-18421574 | None:intergenic |
| GAATTCTGGACAGAATTGGC+GGG | 0.562938 | 4_1:-18421573 | None:intergenic |
| CAACCACAGTGGGTAGAGGG+CGG | 0.565663 | 4_1:+18422210 | Msa0538760:CDS |
| GTCAATGCTTTGCTTTGCCT+AGG | 0.569127 | 4_1:+18420880 | Msa0538760:CDS |
| AGTCTATCGGTTTGAACCCA+AGG | 0.572021 | 4_1:+18421988 | Msa0538760:CDS |
| CTACCCACTGTGGTTGAAGG+GGG | 0.582446 | 4_1:-18422203 | None:intergenic |
| GCACCGGATAATGAACCACT+AGG | 0.592652 | 4_1:-18421831 | None:intergenic |
| TGCCAAAGAACTTGATACCC+AGG | 0.592784 | 4_1:+18418598 | Msa0538760:CDS |
| GATGAAACAACATTTGATGC+CGG | 0.594371 | 4_1:-18422095 | None:intergenic |
| GGACAGCATGTTTATCAAGT+CGG | 0.595468 | 4_1:-18420915 | None:intergenic |
| GCCTTCAGGTGGAAGCTCCA+AGG | 0.597591 | 4_1:+18421475 | Msa0538760:CDS |
| TTCAGTATCACCAAATTGTG+AGG | 0.603278 | 4_1:-18421730 | None:intergenic |
| CCAAGGGTACACATAAGGGT+TGG | 0.603498 | 4_1:-18420988 | None:intergenic |
| GATAATGAACCACTAGGGCG+TGG | 0.610882 | 4_1:-18421825 | None:intergenic |
| GATTGGCCTCCACGCCCTAG+TGG | 0.614962 | 4_1:+18421816 | Msa0538760:CDS |
| AATAGAATTTGCAACCCCAA+GGG | 0.617052 | 4_1:-18421004 | None:intergenic |
| TGCCAAGTCCCAAAATTCTG+TGG | 0.619306 | 4_1:+18421965 | Msa0538760:CDS |
| AGCTGTTGAGCAGTCAGGAG+TGG | 0.622583 | 4_1:-18421191 | None:intergenic |
| AGATTGGGGTCCTAAAGCAA+CGG | 0.625317 | 4_1:+18421548 | Msa0538760:CDS |
| CCCAACAAATCCAAAAGGGG+TGG | 0.627609 | 4_1:-18422296 | None:intergenic |
| GTCCTTCAGTAGATATAGAG+TGG | 0.630972 | 4_1:+18421682 | Msa0538760:CDS |
| GCATCTGGAAATTCCAACAA+TGG | 0.635190 | 4_1:+18421852 | Msa0538760:CDS |
| AATTCTGGACAGAATTGGCG+GGG | 0.640042 | 4_1:-18421572 | None:intergenic |
| GGCCACTCTATATCTACTGA+AGG | 0.646021 | 4_1:-18421684 | None:intergenic |
| ACATAAGGGTTGGAGGAGAG+CGG | 0.662635 | 4_1:-18420978 | None:intergenic |
| AATGAACCACTAGGGCGTGG+AGG | 0.667047 | 4_1:-18421822 | None:intergenic |
| TACCCCAACAAATCCAAAAG+GGG | 0.667620 | 4_1:-18422299 | None:intergenic |
| ATCTATGATAGGAAACCCTG+TGG | 0.667915 | 4_1:+18421614 | Msa0538760:CDS |
| TCTATCAGTAACCTGAACAA+TGG | 0.676581 | 4_1:+18422023 | Msa0538760:CDS |
| ACTGAAAACAACAGTTGCTG+CGG | 0.682367 | 4_1:+18419708 | Msa0538760:CDS |
| CACCGGATAATGAACCACTA+GGG | 0.684290 | 4_1:-18421830 | None:intergenic |
| ATGTCTCCGAGCATTCAACA+CGG | 0.699428 | 4_1:-18422369 | None:intergenic |
| TCCCCGCCCTCTACCCACTG+TGG | 0.700815 | 4_1:-18422213 | None:intergenic |
| TGGATGTTACTTGACCCACA+GGG | 0.701888 | 4_1:-18421629 | None:intergenic |
| TCTATGATAGGAAACCCTGT+GGG | 0.702943 | 4_1:+18421615 | Msa0538760:CDS |
| AGACCAGAAGATGCACGAGG+CGG | 0.718681 | 4_1:-18421705 | None:intergenic |
| GACTGATTCTGGAATCCCAG+AGG | 0.719882 | 4_1:+18421428 | Msa0538760:CDS |
| AGTAAGATAGAAGAGAAGCG+AGG | 0.733585 | 4_1:+18421396 | Msa0538760:intron |
| AGTGCTAGTCCATGAACACG+TGG | 0.738043 | 4_1:-18419688 | None:intergenic |
| AAGAACCCAAGAGAACTCTG+AGG | 0.741155 | 4_1:-18422053 | None:intergenic |
| GTAAGACCAGAAGATGCACG+AGG | 0.776735 | 4_1:-18421708 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATATAAATTTATATAAT+AGG | + | chr4_1:18420685-18420704 | Msa0538760:intron | 0.0% |
| !!! | TATTTTCTTTGTTTTTTTAT+GGG | - | chr4_1:18419014-18419033 | None:intergenic | 10.0% |
| !!! | TTAAATACATTTTGAAATAT+TGG | + | chr4_1:18420008-18420027 | Msa0538760:intron | 10.0% |
| !! | TTAGTTATAACATAAATAAT+TGG | + | chr4_1:18420042-18420061 | Msa0538760:intron | 10.0% |
| !! | ATATCAATTTCACTAATATT+GGG | - | chr4_1:18418920-18418939 | None:intergenic | 15.0% |
| !!! | CTATTTTCTTTGTTTTTTTA+TGG | - | chr4_1:18419015-18419034 | None:intergenic | 15.0% |
| !! | CATAAAAAAACAAAGAAAAT+AGG | + | chr4_1:18419013-18419032 | Msa0538760:intron | 15.0% |
| !! | TTTCAATTAAATACTTAACA+TGG | - | chr4_1:18419861-18419880 | None:intergenic | 15.0% |
| !! | ATGTTAAGTATTTAATTGAA+AGG | + | chr4_1:18419860-18419879 | Msa0538760:intron | 15.0% |
| !! | TAAATATTTGAGAGAAATAA+AGG | - | chr4_1:18419943-18419962 | None:intergenic | 15.0% |
| !! | ATAAAATAAAAAATTACTGG+AGG | - | chr4_1:18421262-18421281 | None:intergenic | 15.0% |
| !! | ATTAGATTTATGTTTGTACT+TGG | - | chr4_1:18418897-18418916 | None:intergenic | 20.0% |
| !! | GATATCAATTTCACTAATAT+TGG | - | chr4_1:18418921-18418940 | None:intergenic | 20.0% |
| !! | AAGTGAACAAAAGTAAAAAA+GGG | - | chr4_1:18419566-18419585 | None:intergenic | 20.0% |
| !! | AAAGTGAACAAAAGTAAAAA+AGG | - | chr4_1:18419567-18419586 | None:intergenic | 20.0% |
| !! | ATACTTAACATGGTAAAATA+AGG | - | chr4_1:18419851-18419870 | None:intergenic | 20.0% |
| !! | TCTCTCAAATATTTAACATT+AGG | + | chr4_1:18419948-18419967 | Msa0538760:intron | 20.0% |
| !! | ACAACATATAAAAGAAATTG+TGG | - | chr4_1:18420223-18420242 | None:intergenic | 20.0% |
| !! | TAGATGTATTAATAGAATTC+TGG | - | chr4_1:18421590-18421609 | None:intergenic | 20.0% |
| !! | ACATCTAATAAATCTATGAT+AGG | + | chr4_1:18421603-18421622 | Msa0538760:CDS | 20.0% |
| !!! | TGTTTGCAAATTATTTTGTA+TGG | - | chr4_1:18421652-18421671 | None:intergenic | 20.0% |
| ! | GAAGAACATGTGAAATTAAA+TGG | - | chr4_1:18418505-18418524 | None:intergenic | 25.0% |
| !!! | CTGTTGAATACTTTTTAATG+TGG | + | chr4_1:18418671-18418690 | Msa0538760:intron | 25.0% |
| ! | AACAAAGAAAATAGGCAATT+AGG | + | chr4_1:18419021-18419040 | Msa0538760:intron | 25.0% |
| ! | TCAAAGATTCGATAAACTTA+TGG | - | chr4_1:18419138-18419157 | None:intergenic | 25.0% |
| !!! | TTTGTTTATTTTCCTGTCAA+GGG | - | chr4_1:18419344-18419363 | None:intergenic | 25.0% |
| ! | AGTGAACAAAAGTAAAAAAG+GGG | - | chr4_1:18419565-18419584 | None:intergenic | 25.0% |
| !! | CATAATAACTGCATTGATAA+TGG | - | chr4_1:18419978-18419997 | None:intergenic | 25.0% |
| ! | GTATATTTGTATATGTACAC+TGG | + | chr4_1:18420126-18420145 | Msa0538760:intron | 25.0% |
| ! | AATACTAACTTCAACTTTGT+TGG | + | chr4_1:18420535-18420554 | Msa0538760:intron | 25.0% |
| ! | CACATAAAATAACACAACTA+AGG | - | chr4_1:18420657-18420676 | None:intergenic | 25.0% |
| !!! | TGCAAATTCTATTTTTAAGC+AGG | + | chr4_1:18421014-18421033 | Msa0538760:CDS | 25.0% |
| ! | AATGTTAAATCAACTGATCT+TGG | + | chr4_1:18422128-18422147 | Msa0538760:CDS | 25.0% |
| ACGTGAATCATTATCATCAT+AGG | - | chr4_1:18418543-18418562 | None:intergenic | 30.0% | |
| !!! | TCTCTCTGTTTGACTTTTTT+TGG | + | chr4_1:18418721-18418740 | Msa0538760:intron | 30.0% |
| TTTGGCCTAATTGTTGATAT+CGG | - | chr4_1:18418860-18418879 | None:intergenic | 30.0% | |
| ATATCAACAATTAGGCCAAA+TGG | + | chr4_1:18418860-18418879 | Msa0538760:intron | 30.0% | |
| TTAAACTTGAGGAAAGAGTT+GGG | - | chr4_1:18418954-18418973 | None:intergenic | 30.0% | |
| !! | TATTTTGAGTAGCAAGCTTA+AGG | - | chr4_1:18418986-18419005 | None:intergenic | 30.0% |
| ATTACCAAGAGTTGTAATTC+AGG | - | chr4_1:18419053-18419072 | None:intergenic | 30.0% | |
| ! | AATTAGTTTGGAGGTTAAGT+TGG | - | chr4_1:18419177-18419196 | None:intergenic | 30.0% |
| !!! | TGTTTTGGAAATTAGTTTGG+AGG | - | chr4_1:18419186-18419205 | None:intergenic | 30.0% |
| !!! | TGGTGTTTTGGAAATTAGTT+TGG | - | chr4_1:18419189-18419208 | None:intergenic | 30.0% |
| ATTACTGGGTCATTAATAGA+TGG | - | chr4_1:18419226-18419245 | None:intergenic | 30.0% | |
| GAATACACTTTGTCATTACT+GGG | - | chr4_1:18419240-18419259 | None:intergenic | 30.0% | |
| TGAATACACTTTGTCATTAC+TGG | - | chr4_1:18419241-18419260 | None:intergenic | 30.0% | |
| AAGACATTCAACACTTGTAA+AGG | - | chr4_1:18419310-18419329 | None:intergenic | 30.0% | |
| !! | GTTTGTTTATTTTCCTGTCA+AGG | - | chr4_1:18419345-18419364 | None:intergenic | 30.0% |
| ! | AGTAATTTTGTGTGGTATGT+GGG | - | chr4_1:18419382-18419401 | None:intergenic | 30.0% |
| ! | AAGTAATTTTGTGTGGTATG+TGG | - | chr4_1:18419383-18419402 | None:intergenic | 30.0% |
| !!! | GTTTTGGAAGTAATTTTGTG+TGG | - | chr4_1:18419390-18419409 | None:intergenic | 30.0% |
| !!! | TTTTGTTGTCTCTGAAGTTT+TGG | - | chr4_1:18419406-18419425 | None:intergenic | 30.0% |
| ! | ATATCATCAGATAACCCTTT+TGG | + | chr4_1:18419492-18419511 | Msa0538760:intron | 30.0% |
| AATGATAAGACAAGCCAAAA+GGG | - | chr4_1:18419509-18419528 | None:intergenic | 30.0% | |
| AAATGATAAGACAAGCCAAA+AGG | - | chr4_1:18419510-18419529 | None:intergenic | 30.0% | |
| TTATATCATCAGATAACCCT+TGG | + | chr4_1:18419490-18419509 | Msa0538760:intron | 30.0% | |
| !! | GTTGCTGCTTTAATATTAGA+GGG | - | chr4_1:18419607-18419626 | None:intergenic | 30.0% |
| !! | AGTTGCTGCTTTAATATTAG+AGG | - | chr4_1:18419608-18419627 | None:intergenic | 30.0% |
| TTTATGTTCTTTCTTTCAGC+TGG | + | chr4_1:18419648-18419667 | Msa0538760:intron | 30.0% | |
| ! | AACTTTGAGCTTTTACCTTT+TGG | + | chr4_1:18419749-18419768 | Msa0538760:intron | 30.0% |
| AAATATACAATGACTGTCTG+AGG | - | chr4_1:18419782-18419801 | None:intergenic | 30.0% | |
| TCAGACAGTCATTGTATATT+TGG | + | chr4_1:18419781-18419800 | Msa0538760:intron | 30.0% | |
| ATAAAGGCAACATGTCAAAT+AGG | - | chr4_1:18419927-18419946 | None:intergenic | 30.0% | |
| TGAGTTTAGATTGTTTGTAG+TGG | + | chr4_1:18420308-18420327 | Msa0538760:intron | 30.0% | |
| GAGTTTAGATTGTTTGTAGT+GGG | + | chr4_1:18420309-18420328 | Msa0538760:intron | 30.0% | |
| AGTTTAGATTGTTTGTAGTG+GGG | + | chr4_1:18420310-18420329 | Msa0538760:intron | 30.0% | |
| ! | ATAAGCCTTTTGTGTTGTAA+TGG | + | chr4_1:18420566-18420585 | Msa0538760:intron | 30.0% |
| GATAACCATTACAACACAAA+AGG | - | chr4_1:18420574-18420593 | None:intergenic | 30.0% | |
| TTGTAATGGTTATCTTCGAT+AGG | + | chr4_1:18420580-18420599 | Msa0538760:intron | 30.0% | |
| CAAAATGTGAGATCATAACA+TGG | - | chr4_1:18420725-18420744 | None:intergenic | 30.0% | |
| TACATTTGTAATTGTCTCTC+TGG | + | chr4_1:18420843-18420862 | Msa0538760:intron | 30.0% | |
| TTGATTCTTCTTGTTCAGTA+CGG | + | chr4_1:18421128-18421147 | Msa0538760:intron | 30.0% | |
| ! | CTTGACAAAGAGCATATATT+TGG | - | chr4_1:18421234-18421253 | None:intergenic | 30.0% |
| AATAGAATTCTGGACAGAAT+TGG | - | chr4_1:18421580-18421599 | None:intergenic | 30.0% | |
| AATTCCAACAATGGTATTTC+AGG | + | chr4_1:18421861-18421880 | Msa0538760:CDS | 30.0% | |
| GAATGGCATTAAACAAGATA+GGG | + | chr4_1:18421883-18421902 | Msa0538760:CDS | 30.0% | |
| TGATTCACGTTTACAAGAAG+AGG | + | chr4_1:18418553-18418572 | Msa0538760:CDS | 35.0% | |
| !! | AGAAGAGGTGTTGAAAAAGT+CGG | + | chr4_1:18418568-18418587 | Msa0538760:CDS | 35.0% |
| AGCTAATATAGCATTCACCT+GGG | - | chr4_1:18418618-18418637 | None:intergenic | 35.0% | |
| TGGAGACTGTTGAAACTTTA+CGG | + | chr4_1:18418741-18418760 | Msa0538760:intron | 35.0% | |
| GAAACTTTACGGTTTAGACA+AGG | + | chr4_1:18418752-18418771 | Msa0538760:intron | 35.0% | |
| TTACGGTTTAGACAAGGAAA+AGG | + | chr4_1:18418758-18418777 | Msa0538760:intron | 35.0% | |
| ACCTACCGATATCAACAATT+AGG | + | chr4_1:18418852-18418871 | Msa0538760:intron | 35.0% | |
| ! | GAAAGAGTTGGGAGATTTTA+CGG | - | chr4_1:18418943-18418962 | None:intergenic | 35.0% |
| CTTAAACTTGAGGAAAGAGT+TGG | - | chr4_1:18418955-18418974 | None:intergenic | 35.0% | |
| GGTTTGAAAGCTTAAACTTG+AGG | - | chr4_1:18418965-18418984 | None:intergenic | 35.0% | |
| TCTTCCTGAATTACAACTCT+TGG | + | chr4_1:18419046-18419065 | Msa0538760:intron | 35.0% | |
| TAAAGGGTCCTTAGTTACTT+CGG | + | chr4_1:18419093-18419112 | Msa0538760:intron | 35.0% | |
| ! | AAACTTATGGCATTAGCTTG+AGG | - | chr4_1:18419125-18419144 | None:intergenic | 35.0% |
| ! | AAGTTGGTCATTGAAGAGAA+AGG | - | chr4_1:18419161-18419180 | None:intergenic | 35.0% |
| !!! | TAATGCTCAACTTGGTGTTT+TGG | - | chr4_1:18419201-18419220 | None:intergenic | 35.0% |
| AGATGGTATAATGCTCAACT+TGG | - | chr4_1:18419209-18419228 | None:intergenic | 35.0% | |
| ! | GTAATTTTGTGTGGTATGTG+GGG | - | chr4_1:18419381-18419400 | None:intergenic | 35.0% |
| CTTCAGAGACAACAAAATAG+AGG | + | chr4_1:18419409-18419428 | Msa0538760:intron | 35.0% | |
| AGGTAACAAATAAAACCGTG+AGG | - | chr4_1:18419448-18419467 | None:intergenic | 35.0% | |
| ATCTGATGATATAAGCCTCA+GGG | - | chr4_1:18419484-18419503 | None:intergenic | 35.0% | |
| TATCTGATGATATAAGCCTC+AGG | - | chr4_1:18419485-18419504 | None:intergenic | 35.0% | |
| ATCTGATGATATAAGCCTCA+GGG | - | chr4_1:18419484-18419503 | None:intergenic | 35.0% | |
| TATCTGATGATATAAGCCTC+AGG | - | chr4_1:18419485-18419504 | None:intergenic | 35.0% | |
| AAAAGTAAAAAAGGGGCCAA+GGG | - | chr4_1:18419558-18419577 | None:intergenic | 35.0% | |
| ! | GCTAAGAGAAGCTCTTATTT+AGG | - | chr4_1:18420351-18420370 | None:intergenic | 35.0% |
| ! | TTTAAGAGGGGTTTTCTTTG+TGG | + | chr4_1:18420397-18420416 | Msa0538760:intron | 35.0% |
| ! | TAAAAGCACACATGCACATA+AGG | - | chr4_1:18420793-18420812 | None:intergenic | 35.0% |
| TAGTTTCACAGTTTACGTAG+AGG | + | chr4_1:18420811-18420830 | Msa0538760:intron | 35.0% | |
| ! | GAATAGTTTGCAAGATTTCC+AGG | - | chr4_1:18420939-18420958 | None:intergenic | 35.0% |
| AATAGAATTTGCAACCCCAA+GGG | - | chr4_1:18421007-18421026 | None:intergenic | 35.0% | |
| AAATAGAATTTGCAACCCCA+AGG | - | chr4_1:18421008-18421027 | None:intergenic | 35.0% | |
| TTCATAATTCAGGCCAGTAA+TGG | - | chr4_1:18421047-18421066 | None:intergenic | 35.0% | |
| CTGTTGTGATCAACAATTGT+TGG | + | chr4_1:18421085-18421104 | Msa0538760:intron | 35.0% | |
| TGTCAGAGATTAAGGAGAAA+GGG | - | chr4_1:18421335-18421354 | None:intergenic | 35.0% | |
| TTGTCAGAGATTAAGGAGAA+AGG | - | chr4_1:18421336-18421355 | None:intergenic | 35.0% | |
| CAAAAGCTTGTCAGAGATTA+AGG | - | chr4_1:18421343-18421362 | None:intergenic | 35.0% | |
| AAACTATCTCCTGCAGTTAA+CGG | + | chr4_1:18421453-18421472 | Msa0538760:CDS | 35.0% | |
| AACAAAAAGCAGCTTCTCTT+GGG | + | chr4_1:18421521-18421540 | Msa0538760:CDS | 35.0% | |
| ATCTACTGAAGGACATGAAT+TGG | - | chr4_1:18421676-18421695 | None:intergenic | 35.0% | |
| TTCAGTATCACCAAATTGTG+AGG | - | chr4_1:18421733-18421752 | None:intergenic | 35.0% | |
| ! | CACAATTTGGTGATACTGAA+AGG | + | chr4_1:18421733-18421752 | Msa0538760:CDS | 35.0% |
| ATCATCTTCAAGATTGGATG+TGG | - | chr4_1:18421784-18421803 | None:intergenic | 35.0% | |
| AGGATCATCATCTTCAAGAT+TGG | - | chr4_1:18421790-18421809 | None:intergenic | 35.0% | |
| ! | ATGATGATCCTTTTGCTGAT+TGG | + | chr4_1:18421799-18421818 | Msa0538760:CDS | 35.0% |
| CATTCCTGAAATACCATTGT+TGG | - | chr4_1:18421868-18421887 | None:intergenic | 35.0% | |
| CAACAATGGTATTTCAGGAA+TGG | + | chr4_1:18421866-18421885 | Msa0538760:CDS | 35.0% | |
| GGAATGGCATTAAACAAGAT+AGG | + | chr4_1:18421882-18421901 | Msa0538760:CDS | 35.0% | |
| ACAAGCAATTCAAGCAATCT+TGG | + | chr4_1:18421918-18421937 | Msa0538760:CDS | 35.0% | |
| ! | GATAGACTCCACAGAATTTT+GGG | - | chr4_1:18421976-18421995 | None:intergenic | 35.0% |
| CAAAATTCTGTGGAGTCTAT+CGG | + | chr4_1:18421975-18421994 | Msa0538760:CDS | 35.0% | |
| TCTATCAGTAACCTGAACAA+TGG | + | chr4_1:18422023-18422042 | Msa0538760:CDS | 35.0% | |
| GATGAAACAACATTTGATGC+CGG | - | chr4_1:18422098-18422117 | None:intergenic | 35.0% | |
| TGCAAGTTGTTCATTCTTGT+TGG | - | chr4_1:18422168-18422187 | None:intergenic | 35.0% | |
| TTACCCCAACAAATCCAAAA+GGG | - | chr4_1:18422303-18422322 | None:intergenic | 35.0% | |
| TCATAGGCTCGAACAATCAT+TGG | - | chr4_1:18418527-18418546 | None:intergenic | 40.0% | |
| GGTATCAAGTTCTTTGGCAA+GGG | - | chr4_1:18418597-18418616 | None:intergenic | 40.0% | |
| CAGCTAATATAGCATTCACC+TGG | - | chr4_1:18418619-18418638 | None:intergenic | 40.0% | |
| GCCTAATTGTTGATATCGGT+AGG | - | chr4_1:18418856-18418875 | None:intergenic | 40.0% | |
| TCAACAATTAGGCCAAATGG+TGG | + | chr4_1:18418863-18418882 | Msa0538760:intron | 40.0% | |
| !! | TACAACTCTTGGTAATGCCT+TGG | + | chr4_1:18419057-18419076 | Msa0538760:intron | 40.0% |
| !! | ACAACTCTTGGTAATGCCTT+GGG | + | chr4_1:18419058-18419077 | Msa0538760:intron | 40.0% |
| TTTACAGAGCTATCTACCCA+AGG | - | chr4_1:18419077-18419096 | None:intergenic | 40.0% | |
| ! | TTGGGTAGATAGCTCTGTAA+AGG | + | chr4_1:18419076-18419095 | Msa0538760:intron | 40.0% |
| ! | TGGGTAGATAGCTCTGTAAA+GGG | + | chr4_1:18419077-18419096 | Msa0538760:intron | 40.0% |
| TACCACCCAGTAACACAAAT+AGG | + | chr4_1:18419281-18419300 | Msa0538760:intron | 40.0% | |
| ACCACCCAGTAACACAAATA+GGG | + | chr4_1:18419282-18419301 | Msa0538760:intron | 40.0% | |
| TATGTGGGGATTATTGCTCT+AGG | - | chr4_1:18419367-18419386 | None:intergenic | 40.0% | |
| AGAGACAACAAAATAGAGGC+AGG | + | chr4_1:18419413-18419432 | Msa0538760:intron | 40.0% | |
| CTCAGGGAAATGATAAGACA+AGG | - | chr4_1:18419468-18419487 | None:intergenic | 40.0% | |
| CTTGTCTTATCATTTCCCTG+AGG | + | chr4_1:18419466-18419485 | Msa0538760:intron | 40.0% | |
| CTTGTCTTATCATTTCCCTG+AGG | + | chr4_1:18419466-18419485 | Msa0538760:intron | 40.0% | |
| CAAAAGTAAAAAAGGGGCCA+AGG | - | chr4_1:18419559-18419578 | None:intergenic | 40.0% | |
| ! | GTGATTTTACCACGTGTTCA+TGG | + | chr4_1:18419679-18419698 | Msa0538760:CDS | 40.0% |
| ACTGAAAACAACAGTTGCTG+CGG | + | chr4_1:18419708-18419727 | Msa0538760:CDS | 40.0% | |
| TATGTACACTGGCAATCTGA+CGG | + | chr4_1:18420137-18420156 | Msa0538760:intron | 40.0% | |
| GACGGTTAACTTTGAACTTC+TGG | + | chr4_1:18420155-18420174 | Msa0538760:intron | 40.0% | |
| GCTAGATGTTTGAGAATGCA+TGG | + | chr4_1:18420194-18420213 | Msa0538760:intron | 40.0% | |
| ! | AATGTCAGCTCATTTGGCTT+GGG | - | chr4_1:18420257-18420276 | None:intergenic | 40.0% |
| AAGCCAAATGAGCTGACATT+GGG | + | chr4_1:18420257-18420276 | Msa0538760:intron | 40.0% | |
| TCTGGCTGAACAGCATAAAT+TGG | - | chr4_1:18420373-18420392 | None:intergenic | 40.0% | |
| AATTTATGCTGTTCAGCCAG+AGG | + | chr4_1:18420372-18420391 | Msa0538760:intron | 40.0% | |
| AGGTTGTTGAACTTTGCAGT+TGG | + | chr4_1:18420437-18420456 | Msa0538760:intron | 40.0% | |
| CTTTCTTGCTCGTTCTTGAA+GGG | + | chr4_1:18420464-18420483 | Msa0538760:intron | 40.0% | |
| ! | AATTGTCTCTCTGGTTTGAC+AGG | + | chr4_1:18420852-18420871 | Msa0538760:intron | 40.0% |
| GGACAGCATGTTTATCAAGT+CGG | - | chr4_1:18420918-18420937 | None:intergenic | 40.0% | |
| ACTTGATAAACATGCTGTCC+TGG | + | chr4_1:18420918-18420937 | Msa0538760:CDS | 40.0% | |
| AGCAGGTAATCAACCATTAC+TGG | + | chr4_1:18421031-18421050 | Msa0538760:intron | 40.0% | |
| ACGAGTGCAGTTCATAATTC+AGG | - | chr4_1:18421057-18421076 | None:intergenic | 40.0% | |
| AGATTAAGGAGAAAGGGAGA+CGG | - | chr4_1:18421329-18421348 | None:intergenic | 40.0% | |
| AGTAAGATAGAAGAGAAGCG+AGG | + | chr4_1:18421396-18421415 | Msa0538760:intron | 40.0% | |
| !! | CAGGAGATAGTTTTACCTCT+GGG | - | chr4_1:18421446-18421465 | None:intergenic | 40.0% |
| !!! | GCTGCTTTTTGTTGAAGCAA+CGG | - | chr4_1:18421514-18421533 | None:intergenic | 40.0% |
| CAACAAAAAGCAGCTTCTCT+TGG | + | chr4_1:18421520-18421539 | Msa0538760:CDS | 40.0% | |
| AGAATTCTGGACAGAATTGG+CGG | - | chr4_1:18421577-18421596 | None:intergenic | 40.0% | |
| ATCTATGATAGGAAACCCTG+TGG | + | chr4_1:18421614-18421633 | Msa0538760:CDS | 40.0% | |
| TCTATGATAGGAAACCCTGT+GGG | + | chr4_1:18421615-18421634 | Msa0538760:CDS | 40.0% | |
| GTCCTTCAGTAGATATAGAG+TGG | + | chr4_1:18421682-18421701 | Msa0538760:CDS | 40.0% | |
| !! | TCTGGTCTTACCTCACAATT+TGG | + | chr4_1:18421720-18421739 | Msa0538760:CDS | 40.0% |
| TTCAAGATTGGATGTGGATG+AGG | - | chr4_1:18421778-18421797 | None:intergenic | 40.0% | |
| GCATCTGGAAATTCCAACAA+TGG | + | chr4_1:18421852-18421871 | Msa0538760:CDS | 40.0% | |
| ! | CGATAGACTCCACAGAATTT+TGG | - | chr4_1:18421977-18421996 | None:intergenic | 40.0% |
| TAGATGAGCTAGCATTCCTT+GGG | - | chr4_1:18422007-18422026 | None:intergenic | 40.0% | |
| ATAGATGAGCTAGCATTCCT+TGG | - | chr4_1:18422008-18422027 | None:intergenic | 40.0% | |
| TTTGAACCTCAGAGTTCTCT+TGG | + | chr4_1:18422047-18422066 | Msa0538760:CDS | 40.0% | |
| TTGAACCTCAGAGTTCTCTT+GGG | + | chr4_1:18422048-18422067 | Msa0538760:CDS | 40.0% | |
| TGGGTTCTTGAAACAAAGTC+AGG | + | chr4_1:18422067-18422086 | Msa0538760:CDS | 40.0% | |
| ! | GAAACAAAGTCAGGCTTTTC+CGG | + | chr4_1:18422076-18422095 | Msa0538760:CDS | 40.0% |
| TACCCCAACAAATCCAAAAG+GGG | - | chr4_1:18422302-18422321 | None:intergenic | 40.0% | |
| GTTACCCCAACAAATCCAAA+AGG | - | chr4_1:18422304-18422323 | None:intergenic | 40.0% | |
| AACATTCCGTGTTGAATGCT+CGG | + | chr4_1:18422363-18422382 | Msa0538760:three_prime_UTR | 40.0% | |
| GGGTATCAAGTTCTTTGGCA+AGG | - | chr4_1:18418598-18418617 | None:intergenic | 45.0% | |
| TGCCAAAGAACTTGATACCC+AGG | + | chr4_1:18418598-18418617 | Msa0538760:CDS | 45.0% | |
| CACCTGGGTATCAAGTTCTT+TGG | - | chr4_1:18418603-18418622 | None:intergenic | 45.0% | |
| ACAATTAGGCCAAATGGTGG+TGG | + | chr4_1:18418866-18418885 | Msa0538760:intron | 45.0% | |
| CCACCCAGTAACACAAATAG+GGG | + | chr4_1:18419283-18419302 | Msa0538760:intron | 45.0% | |
| ! | GGACCCCTATTTGTGTTACT+GGG | - | chr4_1:18419289-18419308 | None:intergenic | 45.0% |
| AGGACCCCTATTTGTGTTAC+TGG | - | chr4_1:18419290-18419309 | None:intergenic | 45.0% | |
| TCAATCTGCAAACCCTTGAC+AGG | + | chr4_1:18419329-18419348 | Msa0538760:intron | 45.0% | |
| !! | GTCTGAGGCATTGAACCAAA+AGG | - | chr4_1:18419767-18419786 | None:intergenic | 45.0% |
| !! | ATGTCAGCTCATTTGGCTTG+GGG | - | chr4_1:18420256-18420275 | None:intergenic | 45.0% |
| CAATGTCAGCTCATTTGGCT+TGG | - | chr4_1:18420258-18420277 | None:intergenic | 45.0% | |
| CAAGCCAAATGAGCTGACAT+TGG | + | chr4_1:18420256-18420275 | Msa0538760:intron | 45.0% | |
| CATTCACTAACCCCAACACA+AGG | - | chr4_1:18420290-18420309 | None:intergenic | 45.0% | |
| ! | TTCAGCCAGAGGCTTTTAAG+AGG | + | chr4_1:18420383-18420402 | Msa0538760:intron | 45.0% |
| !! | TCAGCCAGAGGCTTTTAAGA+GGG | + | chr4_1:18420384-18420403 | Msa0538760:intron | 45.0% |
| AAACCCCTCTTAAAAGCCTC+TGG | - | chr4_1:18420391-18420410 | None:intergenic | 45.0% | |
| ! | AGGGGTTTTCTTTGTGGAGT+TGG | + | chr4_1:18420403-18420422 | Msa0538760:intron | 45.0% |
| TTGTGGAGTTGGAACATGCT+AGG | + | chr4_1:18420414-18420433 | Msa0538760:intron | 45.0% | |
| GCTTTCTTGCTCGTTCTTGA+AGG | + | chr4_1:18420463-18420482 | Msa0538760:intron | 45.0% | |
| GTCAATGCTTTGCTTTGCCT+AGG | + | chr4_1:18420880-18420899 | Msa0538760:CDS | 45.0% | |
| TTTGCTTTGCCTAGGAGACA+TGG | + | chr4_1:18420888-18420907 | Msa0538760:CDS | 45.0% | |
| CAACCCTTATGTGTACCCTT+GGG | + | chr4_1:18420989-18421008 | Msa0538760:CDS | 45.0% | |
| AACCCTTATGTGTACCCTTG+GGG | + | chr4_1:18420990-18421009 | Msa0538760:CDS | 45.0% | |
| ! | AACCCCAAGGGTACACATAA+GGG | - | chr4_1:18420995-18421014 | None:intergenic | 45.0% |
| !! | GCAGGAGATAGTTTTACCTC+TGG | - | chr4_1:18421447-18421466 | None:intergenic | 45.0% |
| CTTCTCTTGGGATGCAGATT+GGG | + | chr4_1:18421533-18421552 | Msa0538760:CDS | 45.0% | |
| TTCTCTTGGGATGCAGATTG+GGG | + | chr4_1:18421534-18421553 | Msa0538760:CDS | 45.0% | |
| AGATTGGGGTCCTAAAGCAA+CGG | + | chr4_1:18421548-18421567 | Msa0538760:CDS | 45.0% | |
| AATTCTGGACAGAATTGGCG+GGG | - | chr4_1:18421575-18421594 | None:intergenic | 45.0% | |
| GAATTCTGGACAGAATTGGC+GGG | - | chr4_1:18421576-18421595 | None:intergenic | 45.0% | |
| ! | TGGATGTTACTTGACCCACA+GGG | - | chr4_1:18421632-18421651 | None:intergenic | 45.0% |
| ! | ATGGATGTTACTTGACCCAC+AGG | - | chr4_1:18421633-18421652 | None:intergenic | 45.0% |
| GGCCACTCTATATCTACTGA+AGG | - | chr4_1:18421687-18421706 | None:intergenic | 45.0% | |
| GAAAGGAAAACAGTTGCAGC+TGG | + | chr4_1:18421750-18421769 | Msa0538760:CDS | 45.0% | |
| CACCGGATAATGAACCACTA+GGG | - | chr4_1:18421833-18421852 | None:intergenic | 45.0% | |
| GTTGGAATTTCCAGATGCAC+CGG | - | chr4_1:18421850-18421869 | None:intergenic | 45.0% | |
| TTCAAGCAATCTTGGTCTCC+AGG | + | chr4_1:18421926-18421945 | Msa0538760:CDS | 45.0% | |
| TGCCAAGTCCCAAAATTCTG+TGG | + | chr4_1:18421965-18421984 | Msa0538760:CDS | 45.0% | |
| !!! | CTCCACAGAATTTTGGGACT+TGG | - | chr4_1:18421970-18421989 | None:intergenic | 45.0% |
| !! | AGTCTATCGGTTTGAACCCA+AGG | + | chr4_1:18421988-18422007 | Msa0538760:CDS | 45.0% |
| GAGGTTCAAAGCCATTGTTC+AGG | - | chr4_1:18422037-18422056 | None:intergenic | 45.0% | |
| AAGAACCCAAGAGAACTCTG+AGG | - | chr4_1:18422056-18422075 | None:intergenic | 45.0% | |
| !! | CCACCCCTTTTGGATTTGTT+GGG | + | chr4_1:18422296-18422315 | Msa0538760:CDS | 45.0% |
| !!! | CACCCCTTTTGGATTTGTTG+GGG | + | chr4_1:18422297-18422316 | Msa0538760:CDS | 45.0% |
| ATGTCTCCGAGCATTCAACA+CGG | - | chr4_1:18422372-18422391 | None:intergenic | 45.0% | |
| !!! | CTAATTAATTTTTAAAATTA+GGG | - | chr4_1:18419826-18419845 | None:intergenic | 5.0% |
| !!! | TCTAATTAATTTTTAAAATT+AGG | - | chr4_1:18419827-18419846 | None:intergenic | 5.0% |
| !! | AAAATAAAATAAAAAATTAC+TGG | - | chr4_1:18421265-18421284 | None:intergenic | 5.0% |
| TTGGCAGTACCACCACCATT+TGG | - | chr4_1:18418878-18418897 | None:intergenic | 50.0% | |
| GGCATGTGCCGAAGTAACTA+AGG | - | chr4_1:18419104-18419123 | None:intergenic | 50.0% | |
| ! | CCCCTATTTGTGTTACTGGG+TGG | - | chr4_1:18419286-18419305 | None:intergenic | 50.0% |
| AGTGCTAGTCCATGAACACG+TGG | - | chr4_1:18419691-18419710 | None:intergenic | 50.0% | |
| !! | TCATTTGGCTTGGGGAAGGT+AGG | - | chr4_1:18420248-18420267 | None:intergenic | 50.0% |
| CCACCCAATGTCAGCTCATT+TGG | - | chr4_1:18420263-18420282 | None:intergenic | 50.0% | |
| CCAAATGAGCTGACATTGGG+TGG | + | chr4_1:18420260-18420279 | Msa0538760:intron | 50.0% | |
| AATGAGCTGACATTGGGTGG+TGG | + | chr4_1:18420263-18420282 | Msa0538760:intron | 50.0% | |
| !! | CAGCCAGAGGCTTTTAAGAG+GGG | + | chr4_1:18420385-18420404 | Msa0538760:intron | 50.0% |
| TGGAGTTGGAACATGCTAGG+AGG | + | chr4_1:18420417-18420436 | Msa0538760:intron | 50.0% | |
| GAACCACCTTTGTCCGATCT+TGG | + | chr4_1:18420746-18420765 | Msa0538760:intron | 50.0% | |
| ATCCTGCCAAGATCGGACAA+AGG | - | chr4_1:18420755-18420774 | None:intergenic | 50.0% | |
| TCCGATCTTGGCAGGATGTA+TGG | + | chr4_1:18420758-18420777 | Msa0538760:intron | 50.0% | |
| CCCATACATCCTGCCAAGAT+CGG | - | chr4_1:18420762-18420781 | None:intergenic | 50.0% | |
| CCGATCTTGGCAGGATGTAT+GGG | + | chr4_1:18420759-18420778 | Msa0538760:intron | 50.0% | |
| ACATAAGGGTTGGAGGAGAG+CGG | - | chr4_1:18420981-18421000 | None:intergenic | 50.0% | |
| AGGGTACACATAAGGGTTGG+AGG | - | chr4_1:18420988-18421007 | None:intergenic | 50.0% | |
| ! | CCAAGGGTACACATAAGGGT+TGG | - | chr4_1:18420991-18421010 | None:intergenic | 50.0% |
| CCAACCCTTATGTGTACCCT+TGG | + | chr4_1:18420988-18421007 | Msa0538760:CDS | 50.0% | |
| ! | CAACCCCAAGGGTACACATA+AGG | - | chr4_1:18420996-18421015 | None:intergenic | 50.0% |
| GTCAGGAGTGGCATAAGCAA+TGG | - | chr4_1:18421182-18421201 | None:intergenic | 50.0% | |
| CATTCAGCTGTTGAGCAGTC+AGG | - | chr4_1:18421199-18421218 | None:intergenic | 50.0% | |
| ! | GGAGTTGCTGTGACTGATTC+TGG | + | chr4_1:18421417-18421436 | Msa0538760:CDS | 50.0% |
| !! | GACTGATTCTGGAATCCCAG+AGG | + | chr4_1:18421428-18421447 | Msa0538760:CDS | 50.0% |
| GCTTCTCTTGGGATGCAGAT+TGG | + | chr4_1:18421532-18421551 | Msa0538760:CDS | 50.0% | |
| GATTGGGGTCCTAAAGCAAC+GGG | + | chr4_1:18421549-18421568 | Msa0538760:CDS | 50.0% | |
| GTAAGACCAGAAGATGCACG+AGG | - | chr4_1:18421711-18421730 | None:intergenic | 50.0% | |
| GATAATGAACCACTAGGGCG+TGG | - | chr4_1:18421828-18421847 | None:intergenic | 50.0% | |
| CGCCCTAGTGGTTCATTATC+CGG | + | chr4_1:18421828-18421847 | Msa0538760:CDS | 50.0% | |
| GCACCGGATAATGAACCACT+AGG | - | chr4_1:18421834-18421853 | None:intergenic | 50.0% | |
| GGTTCATTATCCGGTGCATC+TGG | + | chr4_1:18421837-18421856 | Msa0538760:CDS | 50.0% | |
| CTTGGCAGACCAATTGTTGC+TGG | - | chr4_1:18421952-18421971 | None:intergenic | 50.0% | |
| TCTACCCACTGTGGTTGAAG+GGG | - | chr4_1:18422207-18422226 | None:intergenic | 50.0% | |
| CTCTACCCACTGTGGTTGAA+GGG | - | chr4_1:18422208-18422227 | None:intergenic | 50.0% | |
| CTTCAACCACAGTGGGTAGA+GGG | + | chr4_1:18422207-18422226 | Msa0538760:CDS | 50.0% | |
| !! | CTTGGTATGAGAGTGCTGTC+TGG | - | chr4_1:18422261-18422280 | None:intergenic | 50.0% |
| ! | GCCACCCCTTTTGGATTTGT+TGG | + | chr4_1:18422295-18422314 | Msa0538760:CDS | 50.0% |
| CCCAACAAATCCAAAAGGGG+TGG | - | chr4_1:18422299-18422318 | None:intergenic | 50.0% | |
| !! | CTCGGAGACATTTGCTGTGA+AGG | + | chr4_1:18422381-18422400 | Msa0538760:three_prime_UTR | 50.0% |
| GGGTGGTATAACACGCGACT+TGG | - | chr4_1:18419269-18419288 | None:intergenic | 55.0% | |
| GGCAGGTCAACATGTCCTCA+CGG | + | chr4_1:18419430-18419449 | Msa0538760:intron | 55.0% | |
| !! | CAGCTCATTTGGCTTGGGGA+AGG | - | chr4_1:18420252-18420271 | None:intergenic | 55.0% |
| ! | TTGGGTGGTGGTCCTTGTGT+TGG | + | chr4_1:18420275-18420294 | Msa0538760:intron | 55.0% |
| ! | TGGGTGGTGGTCCTTGTGTT+GGG | + | chr4_1:18420276-18420295 | Msa0538760:intron | 55.0% |
| CTGCCAAGATCGGACAAAGG+TGG | - | chr4_1:18420752-18420771 | None:intergenic | 55.0% | |
| CACCTTTGTCCGATCTTGGC+AGG | + | chr4_1:18420750-18420769 | Msa0538760:intron | 55.0% | |
| GTCGGTTGACCATGTCTCCT+AGG | - | chr4_1:18420900-18420919 | None:intergenic | 55.0% | |
| AGCTGTTGAGCAGTCAGGAG+TGG | - | chr4_1:18421194-18421213 | None:intergenic | 55.0% | |
| TCCTGCAGTTAACGGCCTTC+AGG | + | chr4_1:18421461-18421480 | Msa0538760:CDS | 55.0% | |
| ACCTGAAGGCCGTTAACTGC+AGG | - | chr4_1:18421465-18421484 | None:intergenic | 55.0% | |
| TGCAGTTAACGGCCTTCAGG+TGG | + | chr4_1:18421464-18421483 | Msa0538760:CDS | 55.0% | |
| TCCTTGGAGCTTCCACCTGA+AGG | - | chr4_1:18421479-18421498 | None:intergenic | 55.0% | |
| !! | TGTTGAAGCAACGGTGCTGC+TGG | - | chr4_1:18421505-18421524 | None:intergenic | 55.0% |
| AGACCAGAAGATGCACGAGG+CGG | - | chr4_1:18421708-18421727 | None:intergenic | 55.0% | |
| CGTGGAGGCCAATCAGCAAA+AGG | - | chr4_1:18421810-18421829 | None:intergenic | 55.0% | |
| AATGAACCACTAGGGCGTGG+AGG | - | chr4_1:18421825-18421844 | None:intergenic | 55.0% | |
| GTCTCCAGGCCAGCAACAAT+TGG | + | chr4_1:18421940-18421959 | Msa0538760:CDS | 55.0% | |
| CAGACCAATTGTTGCTGGCC+TGG | - | chr4_1:18421947-18421966 | None:intergenic | 55.0% | |
| CTACCCACTGTGGTTGAAGG+GGG | - | chr4_1:18422206-18422225 | None:intergenic | 55.0% | |
| CCTCTACCCACTGTGGTTGA+AGG | - | chr4_1:18422209-18422228 | None:intergenic | 55.0% | |
| CCTTCAACCACAGTGGGTAG+AGG | + | chr4_1:18422206-18422225 | Msa0538760:CDS | 55.0% | |
| TGGCTGCTCAGTGCTTGACT+TGG | - | chr4_1:18422279-18422298 | None:intergenic | 55.0% | |
| ! | GGGTGGTGGTCCTTGTGTTG+GGG | + | chr4_1:18420277-18420296 | Msa0538760:intron | 60.0% |
| GCCTTCAGGTGGAAGCTCCA+AGG | + | chr4_1:18421475-18421494 | Msa0538760:CDS | 60.0% | |
| !! | ACGGTGCTGCTGGTTGTCCT+TGG | - | chr4_1:18421495-18421514 | None:intergenic | 60.0% |
| ACCACCCCCTTCAACCACAG+TGG | + | chr4_1:18422199-18422218 | Msa0538760:CDS | 60.0% | |
| CCACCCCCTTCAACCACAGT+GGG | + | chr4_1:18422200-18422219 | Msa0538760:CDS | 60.0% | |
| CAACCACAGTGGGTAGAGGG+CGG | + | chr4_1:18422210-18422229 | Msa0538760:CDS | 60.0% | |
| AACCACAGTGGGTAGAGGGC+GGG | + | chr4_1:18422211-18422230 | Msa0538760:CDS | 60.0% | |
| ! | CACTGAGCAGCCACCCCTTT+TGG | + | chr4_1:18422286-18422305 | Msa0538760:CDS | 60.0% |
| ! | TTGGCGGGGCCCGTTGCTTT+AGG | - | chr4_1:18421561-18421580 | None:intergenic | 65.0% |
| TGGCCGCCTCGTGCATCTTC+TGG | + | chr4_1:18421702-18421721 | Msa0538760:CDS | 65.0% | |
| !! | GATTGGCCTCCACGCCCTAG+TGG | + | chr4_1:18421816-18421835 | Msa0538760:CDS | 65.0% |
| GAAGGGGGTGGTGCGAGTCT+AGG | - | chr4_1:18422191-18422210 | None:intergenic | 65.0% | |
| CCCACTGTGGTTGAAGGGGG+TGG | - | chr4_1:18422203-18422222 | None:intergenic | 65.0% | |
| ACCACAGTGGGTAGAGGGCG+GGG | + | chr4_1:18422212-18422231 | Msa0538760:CDS | 65.0% | |
| TCCCCGCCCTCTACCCACTG+TGG | - | chr4_1:18422216-18422235 | None:intergenic | 70.0% | |
| GTGGGTAGAGGGCGGGGAAG+AGG | + | chr4_1:18422218-18422237 | Msa0538760:CDS | 70.0% | |
| AGAGGGCGGGGAAGAGGCAG+AGG | + | chr4_1:18422224-18422243 | Msa0538760:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 18418489 | 18422412 | 18418489 | ID=Msa0538760;Name=Msa0538760 |
| chr4_1 | mRNA | 18418489 | 18422412 | 18418489 | ID=Msa0538760-mRNA-1;Parent=Msa0538760;Name=Msa0538760-mRNA-1;_AED=0.05;_eAED=0.05;_QI=38|1|1|1|1|1|5|90|453 |
| chr4_1 | exon | 18418489 | 18418619 | 18418489 | ID=Msa0538760-mRNA-1:exon:5423;Parent=Msa0538760-mRNA-1 |
| chr4_1 | exon | 18419667 | 18419729 | 18419667 | ID=Msa0538760-mRNA-1:exon:5424;Parent=Msa0538760-mRNA-1 |
| chr4_1 | exon | 18420874 | 18421035 | 18420874 | ID=Msa0538760-mRNA-1:exon:5425;Parent=Msa0538760-mRNA-1 |
| chr4_1 | exon | 18421146 | 18421264 | 18421146 | ID=Msa0538760-mRNA-1:exon:5426;Parent=Msa0538760-mRNA-1 |
| chr4_1 | exon | 18421398 | 18422412 | 18421398 | ID=Msa0538760-mRNA-1:exon:5427;Parent=Msa0538760-mRNA-1 |
| chr4_1 | five_prime_UTR | 18418489 | 18418526 | 18418489 | ID=Msa0538760-mRNA-1:five_prime_utr;Parent=Msa0538760-mRNA-1 |
| chr4_1 | CDS | 18418527 | 18418619 | 18418527 | ID=Msa0538760-mRNA-1:cds;Parent=Msa0538760-mRNA-1 |
| chr4_1 | CDS | 18419667 | 18419729 | 18419667 | ID=Msa0538760-mRNA-1:cds;Parent=Msa0538760-mRNA-1 |
| chr4_1 | CDS | 18420874 | 18421035 | 18420874 | ID=Msa0538760-mRNA-1:cds;Parent=Msa0538760-mRNA-1 |
| chr4_1 | CDS | 18421146 | 18421264 | 18421146 | ID=Msa0538760-mRNA-1:cds;Parent=Msa0538760-mRNA-1 |
| chr4_1 | CDS | 18421398 | 18422322 | 18421398 | ID=Msa0538760-mRNA-1:cds;Parent=Msa0538760-mRNA-1 |
| chr4_1 | three_prime_UTR | 18422323 | 18422412 | 18422323 | ID=Msa0538760-mRNA-1:three_prime_utr;Parent=Msa0538760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
