AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0143970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0143970 MtrunA17_Chr1g0160041 97.848 697 14 1 1 697 1 696 0.0 1396
Msa0143970 MtrunA17_Chr3g0124631 73.286 700 180 3 1 696 1 697 0.0 1060
Msa0143970 MtrunA17_Chr3g0120731 62.787 696 252 4 5 696 35 727 0.0 897
Msa0143970 MtrunA17_Chr1g0205711 34.206 649 375 11 57 696 80 685 3.39e-116 364
Msa0143970 MtrunA17_Chr1g0194371 33.539 647 382 14 62 697 46 655 5.15e-104 332
Msa0143970 MtrunA17_Chr5g0396691 33.231 653 387 15 56 697 42 656 1.94e-99 319
Msa0143970 MtrunA17_Chr5g0396711 32.772 653 390 15 56 697 42 656 7.42e-97 313
Msa0143970 MtrunA17_Chr4g0034181 32.125 607 369 14 104 695 73 651 1.18e-95 309
Msa0143970 MtrunA17_Chr8g0388081 31.803 610 373 11 104 697 13 595 1.33e-95 307
Msa0143970 MtrunA17_Chr7g0270221 32.198 646 344 15 57 688 41 606 2.47e-93 303
Msa0143970 MtrunA17_Chr1g0162621 31.097 611 371 15 104 695 74 653 6.03e-87 286
Msa0143970 MtrunA17_Chr3g0121931 26.000 650 381 16 109 695 107 719 1.13e-45 174
Msa0143970 MtrunA17_Chr3g0121951 26.480 642 385 21 109 695 105 714 3.70e-42 163
Msa0143970 MtrunA17_Chr8g0377991 25.502 647 390 18 109 695 109 723 1.02e-37 150
Msa0143970 MtrunA17_Chr4g0039791 29.942 344 159 15 251 580 204 479 1.52e-22 102
Msa0143970 MtrunA17_Chr5g0409791 26.434 488 253 23 118 579 78 485 3.78e-22 101
Msa0143970 MtrunA17_Chr5g0409771 28.286 350 171 16 251 587 198 480 2.43e-20 95.5
Msa0143970 MtrunA17_Chr4g0072561 24.425 565 332 17 107 651 57 546 2.42e-18 89.0
Msa0143970 MtrunA17_Chr1g0157401 27.761 335 174 13 251 579 205 477 2.32e-17 85.9
Msa0143970 MtrunA17_Chr8g0353341 26.211 351 188 11 235 580 197 481 2.42e-16 82.8
Msa0143970 MtrunA17_Chr6g0471921 25.970 335 180 10 249 579 162 432 6.58e-16 81.3
Msa0143970 MtrunA17_Chr5g0395431 33.529 170 87 8 422 579 349 504 2.93e-13 73.2
Msa0143970 MtrunA17_Chr2g0327341 32.335 167 90 9 422 579 304 456 4.09e-13 72.4
Msa0143970 MtrunA17_Chr5g0433231 33.540 161 90 5 444 593 322 476 4.15e-13 72.4
Msa0143970 MtrunA17_Chr1g0180541 30.723 166 96 7 422 579 311 465 8.34e-13 71.6
Msa0143970 MtrunA17_Chr4g0028411 29.907 214 124 9 422 620 307 509 9.33e-13 71.2
Msa0143970 MtrunA17_Chr5g0433221 41.905 105 55 3 489 593 378 476 2.30e-12 70.1
Msa0143970 MtrunA17_Chr3g0116271 35.570 149 80 7 422 564 323 461 1.23e-11 67.8
Msa0143970 MtrunA17_Chr5g0433241 50.000 76 32 3 503 578 391 460 1.31e-11 67.8
Msa0143970 MtrunA17_Chr1g0180551 32.484 157 93 6 428 579 390 538 1.57e-11 67.8
Msa0143970 MtrunA17_Chr3g0109731 32.934 167 90 6 425 578 306 463 6.48e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0143970 AT1G77590.1 71.879 697 189 4 1 696 1 691 0.0 1050
Msa0143970 AT1G77590.2 78.611 547 114 1 150 696 2 545 0.0 909
Msa0143970 AT2G04350.2 62.408 681 248 5 20 696 44 720 0.0 877
Msa0143970 AT2G04350.1 62.408 681 248 5 20 696 44 720 0.0 877
Msa0143970 AT5G27600.1 34.776 647 374 13 57 696 83 688 1.03e-122 382
Msa0143970 AT3G05970.1 34.884 645 374 12 57 695 83 687 1.60e-114 360
Msa0143970 AT2G47240.1 32.881 663 381 15 48 695 39 652 1.63e-98 317
Msa0143970 AT2G47240.2 32.881 663 381 15 48 695 39 652 1.63e-98 317
Msa0143970 AT2G47240.3 32.881 663 381 15 48 695 39 652 1.63e-98 317
Msa0143970 AT2G47240.4 33.662 609 363 12 102 695 11 593 9.69e-98 313
Msa0143970 AT4G11030.1 31.343 670 405 15 40 697 31 657 2.12e-97 315
Msa0143970 AT4G23850.1 31.880 665 396 16 46 697 37 657 1.39e-95 310
Msa0143970 AT1G64400.1 31.115 646 394 14 62 695 49 655 1.41e-94 307
Msa0143970 AT1G49430.1 30.603 647 400 12 62 696 49 658 1.87e-93 304
Msa0143970 AT1G49430.2 30.143 491 294 12 62 540 49 502 2.67e-62 217
Msa0143970 AT3G23790.1 26.521 641 387 20 109 695 111 721 1.07e-44 171
Msa0143970 AT4G14070.1 25.077 646 381 18 109 696 127 727 1.12e-41 162
Msa0143970 AT4G19010.1 30.928 388 187 19 251 620 205 529 2.98e-27 117
Msa0143970 AT1G20500.1 26.570 414 219 16 251 644 198 546 9.29e-21 97.1
Msa0143970 AT1G20510.1 28.162 419 205 18 229 620 162 511 3.25e-19 92.4
Msa0143970 AT1G65060.1 24.742 485 270 17 110 579 77 481 1.15e-18 90.5
Msa0143970 AT1G20510.2 29.268 369 174 16 229 579 162 461 2.35e-18 89.0
Msa0143970 AT1G65060.2 24.681 470 260 17 110 564 77 467 3.67e-18 88.6
Msa0143970 AT1G20510.3 29.096 354 165 15 229 564 162 447 1.23e-17 86.7
Msa0143970 AT1G51680.1 23.971 559 318 23 120 649 77 557 3.54e-16 82.8
Msa0143970 AT5G16370.1 29.235 366 159 14 251 593 186 474 5.84e-16 82.0
Msa0143970 AT1G51680.3 27.692 390 192 19 207 579 162 478 7.20e-16 81.6
Msa0143970 AT1G51680.2 27.692 390 192 19 207 579 162 478 1.10e-15 80.9
Msa0143970 AT4G05160.1 28.800 250 135 12 422 645 309 541 2.11e-15 80.1
Msa0143970 AT5G16340.1 28.732 355 175 13 251 593 186 474 1.28e-14 77.8
Msa0143970 AT1G75960.1 34.197 193 96 7 418 593 296 474 4.79e-13 72.8
Msa0143970 AT3G48990.1 32.099 162 96 5 421 579 281 431 6.86e-13 72.0
Msa0143970 AT1G21540.1 33.540 161 91 5 444 593 322 477 7.57e-13 72.0
Msa0143970 AT1G20480.1 34.177 158 93 6 425 579 333 482 2.87e-12 70.5
Msa0143970 AT1G77240.1 43.956 91 46 2 503 593 390 475 4.90e-12 69.7
Msa0143970 AT3G21230.1 26.337 243 157 8 422 650 331 565 1.33e-11 68.2
Msa0143970 AT3G21240.1 26.908 249 147 11 422 649 316 550 1.35e-11 68.2
Msa0143970 AT1G21530.2 40.659 91 49 2 503 593 389 474 2.69e-11 67.0
Msa0143970 AT1G21530.1 40.659 91 49 2 503 593 387 472 2.75e-11 67.0

Find 199 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGGTGGTGCTCCCCTTTC+TGG 0.104706 1_4:-3225949 Msa0143970:CDS
TCATAGGCTAACTAGTTATT+TGG 0.187437 1_4:-3222444 Msa0143970:exon
TCTTCCTTGCTCATTTATTA+AGG 0.207102 1_4:-3224971 Msa0143970:intron
GGGGCTTGGAGAAGGCTCTC+TGG 0.212062 1_4:-3226032 Msa0143970:CDS
TGAGTGGTTCCTTGCTCTTC+AGG 0.218360 1_4:-3229157 Msa0143970:intron
TGTTCCCAAACTTGAGAAAA+AGG 0.223387 1_4:-3226930 Msa0143970:CDS
CTGGAACTCCACGGCGTTTA+GGG 0.224728 1_4:+3229523 None:intergenic
TTCTGCTTCAGGGTTGTTTC+AGG 0.236650 1_4:-3227923 Msa0143970:intron
TGTGTTGATGCCAACTTTAT+TGG 0.245256 1_4:-3226629 Msa0143970:CDS
AATCAAGGAATTCCTTATTC+AGG 0.263628 1_4:-3223234 Msa0143970:CDS
TGATCGTCCGCGGAGTTTAC+TGG 0.266065 1_4:+3229504 None:intergenic
AAATTCATGCATCAAATAAC+AGG 0.274932 1_4:-3222356 Msa0143970:three_prime_UTR
ACTGGAACTCCACGGCGTTT+AGG 0.295027 1_4:+3229522 None:intergenic
AGGAGGTTGAAAGCAGTTAA+TGG 0.295468 1_4:-3226072 Msa0143970:CDS
GAAGAAGTTACTCAGAAAAT+TGG 0.300791 1_4:+3229646 None:intergenic
ATGGAAGCTGGTTTGGAGCC+TGG 0.309896 1_4:-3226053 Msa0143970:CDS
AGAAATCATTGATCGTAAAA+AGG 0.325053 1_4:-3223941 Msa0143970:CDS
CTGGTTTGGAGCCTGGGGCT+TGG 0.328472 1_4:-3226046 Msa0143970:CDS
AGACCATATCCTTGACCTAT+TGG 0.336719 1_4:+3225063 None:intergenic
TACTCAGAAAATTGGTGTTT+TGG 0.339274 1_4:+3229654 None:intergenic
TGGAAGCTGGTTTGGAGCCT+GGG 0.345795 1_4:-3226052 Msa0143970:CDS
GCAGTTAATGGAAGCTGGTT+TGG 0.349164 1_4:-3226060 Msa0143970:CDS
TGCTAGTGGTTTGGCTGTGT+TGG 0.354855 1_4:-3229226 Msa0143970:CDS
GGGCTTGGAGAAGGCTCTCT+GGG 0.360923 1_4:-3226031 Msa0143970:CDS
TGGAGCCTGGGGCTTGGAGA+AGG 0.364492 1_4:-3226040 Msa0143970:CDS
TTAGTTAAATATCCACCTTC+AGG 0.376720 1_4:+3224451 None:intergenic
ATGGAAAGGATGAGAGGGTT+GGG 0.386145 1_4:-3229200 Msa0143970:CDS
GTTGGGATACCTATAGGATA+TGG 0.388445 1_4:-3226715 Msa0143970:CDS
CCTCGTGGAGAAATTGTAAT+TGG 0.388867 1_4:-3224415 Msa0143970:CDS
TGTAACGATGTATGCATCAT+TGG 0.392960 1_4:-3227886 Msa0143970:CDS
ATAACTTCAGAAGATCTTCC+TGG 0.394589 1_4:+3222472 None:intergenic
TCTGAAGTTATACGCTTCAT+AGG 0.395208 1_4:-3222460 Msa0143970:exon
TGCGGCTAGGTTGATGAAAA+AGG 0.395377 1_4:-3224018 Msa0143970:intron
GATCCATGGACACCTGAGTC+TGG 0.398942 1_4:-3222546 Msa0143970:CDS
CTCAGTCCACATTGGAAGAA+TGG 0.398978 1_4:-3223263 Msa0143970:CDS
GGAAGCAAAGAAAGCTCGTT+TGG 0.403415 1_4:-3222607 Msa0143970:CDS
TAGGGTGGTTAGTGCGGAAC+AGG 0.411432 1_4:+3229541 None:intergenic
TTAAATTGCTTTCTGATCCA+TGG 0.411441 1_4:-3222560 Msa0143970:CDS
CAAGTGCCACACAGTAACTA+TGG 0.413049 1_4:+3223295 None:intergenic
GCATGGAGAGTATGTTTCCT+TGG 0.413823 1_4:-3223902 Msa0143970:CDS
CTGCTGAGTATCACCAGAAA+GGG 0.422987 1_4:+3225936 None:intergenic
GCTAGTGGTTTGGCTGTGTT+GGG 0.423572 1_4:-3229225 Msa0143970:CDS
AAGATAAAGAAAGGAACAAA+GGG 0.428594 1_4:-3226661 Msa0143970:CDS
TCAGTCCACATTGGAAGAAT+GGG 0.429822 1_4:-3223262 Msa0143970:CDS
AGTGGTTGTTTCGAAGGAAA+TGG 0.431521 1_4:-3229349 Msa0143970:CDS
CGCATCCGTTTCATACTGTC+TGG 0.432950 1_4:-3225967 Msa0143970:CDS
TGTGAGATTTGCTAGTGGTT+TGG 0.437204 1_4:-3229235 Msa0143970:CDS
TATTTGGATGTATCTATTGA+GGG 0.440782 1_4:-3222428 Msa0143970:three_prime_UTR
ATGATAACTGCAACATCAGC+TGG 0.443496 1_4:+3227491 None:intergenic
ATACCTCAGCTGCTAGTTCA+AGG 0.446682 1_4:+3226873 None:intergenic
GGCCGTCAGAAAGACTTTCC+AGG 0.457546 1_4:-3222490 Msa0143970:CDS
ATTTGCTTCGCCGGTGGAGA+CGG 0.459944 1_4:-3229454 Msa0143970:CDS
AAAGGAGATCCATATCCTAT+AGG 0.461389 1_4:+3226706 None:intergenic
CATGGAAAGGATGAGAGGGT+TGG 0.461442 1_4:-3229201 Msa0143970:CDS
TTATTTGGATGTATCTATTG+AGG 0.465505 1_4:-3222429 Msa0143970:three_prime_UTR
CATGGAGAGTATGTTTCCTT+GGG 0.466180 1_4:-3223901 Msa0143970:CDS
TGCTTTCAACCTCCTCTCAT+AGG 0.467574 1_4:+3226080 None:intergenic
CCTCATCTGTTGGACACGGC+TGG 0.471706 1_4:-3227583 Msa0143970:CDS
GCAGCAGTTGGGATACCTAT+AGG 0.472722 1_4:-3226721 Msa0143970:CDS
ATGTATACAAGTGGAAGTAC+TGG 0.474903 1_4:-3227470 Msa0143970:CDS
CAGTTCATCAATATCTGTCT+TGG 0.475583 1_4:-3225916 Msa0143970:CDS
AGAGGTAAATCAGCATCAAC+AGG 0.476714 1_4:+3227515 None:intergenic
CCATCTGATGCCTCATCTGT+TGG 0.477457 1_4:-3227593 Msa0143970:CDS
ACAATTTCTCCACGAGGCAT+TGG 0.478544 1_4:+3224421 None:intergenic
AAGTAACCAAGAGTGACATT+TGG 0.478964 1_4:+3224388 None:intergenic
TGAAAGCAGTTAATGGAAGC+TGG 0.480204 1_4:-3226065 Msa0143970:CDS
GAAGAATGGGCTTCAAATCA+AGG 0.482234 1_4:-3223249 Msa0143970:CDS
AACAGGAGAGTTGCGAGGAT+GGG 0.487307 1_4:+3229558 None:intergenic
TAGAATTTGATGGCAGCAGT+TGG 0.491226 1_4:-3226733 Msa0143970:CDS
CCAATGTAGGTGAATGCAAC+GGG 0.492645 1_4:-3226132 Msa0143970:intron
TTGAATTGGGTGAGTATGAA+TGG 0.493545 1_4:-3229287 Msa0143970:CDS
AAAACACTTGTAAATATTAG+CGG 0.496596 1_4:-3227662 Msa0143970:CDS
GAACAGGAGAGTTGCGAGGA+TGG 0.496821 1_4:+3229557 None:intergenic
GGTGGTCCAAATGTCACTCT+TGG 0.500524 1_4:-3224394 Msa0143970:CDS
TGGTTCTACACTGGTGACAT+AGG 0.500937 1_4:-3223988 Msa0143970:CDS
CCGGTGGAGACGGCGTGGGA+AGG 0.502155 1_4:-3229444 Msa0143970:CDS
TTTATGTCACTCATTGAATG+AGG 0.503431 1_4:-3227853 Msa0143970:intron
GTAACGATGTATGCATCATT+GGG 0.503568 1_4:-3227885 Msa0143970:CDS
TTACTGTGTGGCACTTGTTG+TGG 0.503677 1_4:-3223289 Msa0143970:CDS
GAGTATGATGGTGACAATGT+AGG 0.503858 1_4:+3229581 None:intergenic
TTAATAAATGAGCAAGGAAG+AGG 0.507013 1_4:+3224973 None:intergenic
GATGTATCTGTGAGGGTCAA+AGG 0.507460 1_4:+3226688 None:intergenic
GTCATTTCCAGTGCTCCAAT+AGG 0.507815 1_4:-3225078 Msa0143970:intron
ATGGAGAAGAGTGGTGGTGA+TGG 0.510454 1_4:-3229330 Msa0143970:CDS
GCTCCAATAGGTCAAGGATA+TGG 0.512887 1_4:-3225066 Msa0143970:CDS
AGTATGATGGTGACAATGTA+GGG 0.514432 1_4:+3229582 None:intergenic
AGTTCATCAATATCTGTCTT+GGG 0.515096 1_4:-3225915 Msa0143970:intron
TTTGCAGATGTTAAGCGACT+TGG 0.516699 1_4:-3227548 Msa0143970:CDS
ACAGGAGAGTTGCGAGGATG+GGG 0.517085 1_4:+3229559 None:intergenic
GAGAGCCTTCTCCAAGCCCC+AGG 0.517765 1_4:+3226035 None:intergenic
GGCTGTGTTGGGACATGGAA+AGG 0.517980 1_4:-3229214 Msa0143970:CDS
CAAGATAAAGAAAGGAACAA+AGG 0.518432 1_4:-3226662 Msa0143970:CDS
ATTCTTGACCGTGTTCGCGA+TGG 0.519390 1_4:-3226592 Msa0143970:CDS
AACAAGAGTGGTTGTTTCGA+AGG 0.522687 1_4:-3229355 Msa0143970:CDS
CGAACACGGTCAAGAATTGC+TGG 0.522952 1_4:+3226598 None:intergenic
AGAATTTGATGGCAGCAGTT+GGG 0.524314 1_4:-3226732 Msa0143970:CDS
CTTTAATTAATCATCTGTGA+TGG 0.528944 1_4:+3222299 None:intergenic
GAGAAGAGTGGTGGTGATGG+TGG 0.532291 1_4:-3229327 Msa0143970:CDS
AAGCCAGACTCAGGTGTCCA+TGG 0.533358 1_4:+3222543 None:intergenic
ACATCAAGCAAGATAAAGAA+AGG 0.535370 1_4:-3226670 Msa0143970:CDS
GGTTTGGCTGTGTTGGGACA+TGG 0.539640 1_4:-3229219 Msa0143970:CDS
CCAACAGATGAGGCATCAGA+TGG 0.541242 1_4:+3227593 None:intergenic
GGCGTTTAGGGTGGTTAGTG+CGG 0.543038 1_4:+3229535 None:intergenic
GTAAACTCCGCGGACGATCA+AGG 0.545035 1_4:-3229501 Msa0143970:CDS
CGTGGAGAAATTGTAATTGG+TGG 0.547343 1_4:-3224412 Msa0143970:CDS
ATAGGGAGGTTTCATCAAGA+TGG 0.548115 1_4:-3223970 Msa0143970:CDS
CTTCGCCGGTGGAGACGGCG+TGG 0.549519 1_4:-3229449 Msa0143970:CDS
TTGCTGATACTAGGGTTGAG+TGG 0.550542 1_4:-3229173 Msa0143970:CDS
GATACATCTGTTGGCCGTGT+TGG 0.550940 1_4:-3225000 Msa0143970:CDS
AGAGTATGTTTCCTTGGGAA+AGG 0.550970 1_4:-3223896 Msa0143970:intron
GCATACGGAGAGATTACTGT+TGG 0.551893 1_4:-3229379 Msa0143970:CDS
AATTGTTTGAAGAAGCATGC+AGG 0.551968 1_4:-3229404 Msa0143970:CDS
GGTACAGCAGCCAATAAAGT+TGG 0.552940 1_4:+3226619 None:intergenic
CCACACAGTAACTATGGAAA+GGG 0.553679 1_4:+3223301 None:intergenic
GGTGCATGCATCACTAGTAA+AGG 0.555060 1_4:-3223172 Msa0143970:intron
AGGTCACGACAGTAATTTGT+GGG 0.556939 1_4:-3227697 Msa0143970:CDS
TGAACACTCCATCGCGAACA+CGG 0.558463 1_4:+3226584 None:intergenic
GGAAGCTGGTTTGGAGCCTG+GGG 0.562959 1_4:-3226051 Msa0143970:CDS
CACCACCAGACAGTATGAAA+CGG 0.564677 1_4:+3225962 None:intergenic
GGTTCTACACTGGTGACATA+GGG 0.565337 1_4:-3223987 Msa0143970:CDS
ACTGCTGAGTATCACCAGAA+AGG 0.570535 1_4:+3225935 None:intergenic
CTTGCTTGATGTATCTGTGA+GGG 0.571405 1_4:+3226681 None:intergenic
CCTTCCCACGCCGTCTCCAC+CGG 0.573161 1_4:+3229444 None:intergenic
TGCGAGGATGGGGAGTATGA+TGG 0.575752 1_4:+3229569 None:intergenic
CAGAAGATTTGCTTCGCCGG+TGG 0.575937 1_4:-3229460 Msa0143970:CDS
TGGAAGTACTGGATTACCTA+AGG 0.576756 1_4:-3227459 Msa0143970:intron
TTCCTGGAAAGTCTTTCTGA+CGG 0.577666 1_4:+3222488 None:intergenic
AGTTCAAGGATATGAGCCAT+TGG 0.579034 1_4:+3226887 None:intergenic
GCAGTGACTAAGCCAGACTC+AGG 0.581299 1_4:+3222534 None:intergenic
AGAAGCATGCAGGAAGCATA+CGG 0.584187 1_4:-3229394 Msa0143970:CDS
TAGCTAATCGACTGGCCTGA+AGG 0.584227 1_4:-3224466 Msa0143970:CDS
GCAGTTATCATGTATACAAG+TGG 0.584330 1_4:-3227479 Msa0143970:CDS
TCCAGTGCTCCAATAGGTCA+AGG 0.584850 1_4:-3225072 Msa0143970:intron
TTTACCTTAATAAATGAGCA+AGG 0.585073 1_4:+3224967 None:intergenic
TGTGGCTTCTCAGTCCACAT+TGG 0.586175 1_4:-3223271 Msa0143970:CDS
GGGACATGGAAAGGATGAGA+GGG 0.587034 1_4:-3229205 Msa0143970:CDS
CAACATTATATTGTCCACAT+AGG 0.588682 1_4:+3223332 None:intergenic
ATTACTGTTGGGAACAAGAG+TGG 0.589151 1_4:-3229367 Msa0143970:CDS
GATGTATGCATCATTGGGAG+AGG 0.590579 1_4:-3227880 Msa0143970:CDS
AATTCATGCATCAAATAACA+GGG 0.591013 1_4:-3222355 Msa0143970:three_prime_UTR
GCCAATGTAGGTGAATGCAA+CGG 0.592102 1_4:-3226133 Msa0143970:intron
GAACAGAAGATTTGCTTCGC+CGG 0.592463 1_4:-3229463 Msa0143970:CDS
GCCACACAGTAACTATGGAA+AGG 0.592809 1_4:+3223300 None:intergenic
AAAATCCGAGCAATTCTTGG+TGG 0.592932 1_4:-3225991 Msa0143970:CDS
ACTGCAACATCAGCTGGGAG+AGG 0.595197 1_4:+3227497 None:intergenic
TCGAAGGAAATGGAGAAGAG+TGG 0.595299 1_4:-3229339 Msa0143970:CDS
CTAATCGACTGGCCTGAAGG+TGG 0.598093 1_4:-3224463 Msa0143970:CDS
TGGGACATGGAAAGGATGAG+AGG 0.600615 1_4:-3229206 Msa0143970:CDS
TTAGTATCATACCTTTCCCA+AGG 0.600980 1_4:+3223885 None:intergenic
TTTATTTAGCCTATGAGAGG+AGG 0.601307 1_4:-3226089 Msa0143970:CDS
GGTCTTACAGAGACTTGTGC+TGG 0.601412 1_4:-3225045 Msa0143970:CDS
AAGTCGCTTAACATCTGCAA+AGG 0.603112 1_4:+3227550 None:intergenic
CCCTTTCCATAGTTACTGTG+TGG 0.606415 1_4:-3223301 Msa0143970:CDS
TGCGACCACCAAGAATTGCT+CGG 0.608998 1_4:+3225986 None:intergenic
TGCTCTCAAGCTCAAGAGAG+AGG 0.609631 1_4:-3222511 Msa0143970:CDS
GGAAGGAGTGAGTACATTGG+CGG 0.610244 1_4:-3229427 Msa0143970:CDS
TATCCTTGAACTAGCAGCTG+AGG 0.611422 1_4:-3226876 Msa0143970:intron
ATATCTAGCATACTTGCCAA+TGG 0.611559 1_4:-3226903 Msa0143970:CDS
TTCGCCGGTGGAGACGGCGT+GGG 0.611781 1_4:-3229448 Msa0143970:CDS
GGAATGAGATGGTTCTACAC+TGG 0.616046 1_4:-3223997 Msa0143970:CDS
TCTTATTGTCAGCTCCTATG+TGG 0.616504 1_4:-3223346 Msa0143970:CDS
GACATTGTTAAACTGCAGCA+TGG 0.618080 1_4:-3223919 Msa0143970:CDS
CTCTAAAGAAGAAAGCATCA+AGG 0.618470 1_4:-3223196 Msa0143970:CDS
TCTACACTGGTGACATAGGG+AGG 0.620080 1_4:-3223984 Msa0143970:CDS
ATAAATGAGCAAGGAAGAGG+AGG 0.620903 1_4:+3224976 None:intergenic
GAGGTCACGACAGTAATTTG+TGG 0.621092 1_4:-3227698 Msa0143970:CDS
CTTACAGAGACTTGTGCTGG+TGG 0.623479 1_4:-3225042 Msa0143970:CDS
TGATAACTGCAACATCAGCT+GGG 0.625199 1_4:+3227492 None:intergenic
AAGGAAATGGAGAAGAGTGG+TGG 0.626690 1_4:-3229336 Msa0143970:CDS
ATCCGTTTCATACTGTCTGG+TGG 0.626955 1_4:-3225964 Msa0143970:CDS
CATACGGAGAGATTACTGTT+GGG 0.628004 1_4:-3229378 Msa0143970:CDS
CAACAGATGAGGCATCAGAT+GGG 0.637208 1_4:+3227594 None:intergenic
TCTTGCTTGATGTATCTGTG+AGG 0.638108 1_4:+3226680 None:intergenic
CACACCACCTTGATCGTCCG+CGG 0.642013 1_4:+3229494 None:intergenic
AATGACTCGCCAATGCCTCG+TGG 0.642641 1_4:-3224430 Msa0143970:CDS
TGAAGCCCATTCTTCCAATG+TGG 0.643581 1_4:+3223257 None:intergenic
GAACTCCACGGCGTTTAGGG+TGG 0.647316 1_4:+3229526 None:intergenic
CCAGCCGTGTCCAACAGATG+AGG 0.653025 1_4:+3227583 None:intergenic
GGTGTTGTGAGATTTGCTAG+TGG 0.658642 1_4:-3229240 Msa0143970:CDS
AGTGAAACGTGTGATATGCA+TGG 0.659671 1_4:-3227627 Msa0143970:CDS
GATGCCTCATCTGTTGGACA+CGG 0.661876 1_4:-3227587 Msa0143970:CDS
CGGAGTTTACTGGAACTCCA+CGG 0.663555 1_4:+3229514 None:intergenic
AATTACGAACCTGAAGAGCA+AGG 0.664494 1_4:+3229148 None:intergenic
TCGCGATGGAGTGTTCAAGA+AGG 0.664511 1_4:-3226578 Msa0143970:intron
ATCAAGGTGGTGTGACAGTG+CGG 0.668330 1_4:-3229485 Msa0143970:CDS
AAAGACAAAAGAATCATACA+AGG 0.668435 1_4:-3224353 Msa0143970:intron
AAGGAAGAGGAGGTCCAACA+CGG 0.670202 1_4:+3224986 None:intergenic
TGCTGAGTATCACCAGAAAG+GGG 0.679172 1_4:+3225937 None:intergenic
CCAATTACAATTTCTCCACG+AGG 0.687033 1_4:+3224415 None:intergenic
ATTCATGCATCAAATAACAG+GGG 0.687599 1_4:-3222354 Msa0143970:three_prime_UTR
TGCGGAACAGGAGAGTTGCG+AGG 0.692879 1_4:+3229553 None:intergenic
ATGTAGGTGAATGCAACGGG+AGG 0.694846 1_4:-3226129 Msa0143970:intron
GTGGGAAGGAGTGAGTACAT+TGG 0.695328 1_4:-3229430 Msa0143970:CDS
GATAAAGAAAGGAACAAAGG+GGG 0.697638 1_4:-3226659 Msa0143970:CDS
AGATAAAGAAAGGAACAAAG+GGG 0.697836 1_4:-3226660 Msa0143970:CDS
TAAAGAAGAAAGCATCAAGG+AGG 0.735856 1_4:-3223193 Msa0143970:CDS
ACTAACCACCCTAAACGCCG+TGG 0.744248 1_4:-3229531 Msa0143970:CDS
AACTCCGCGGACGATCAAGG+TGG 0.767764 1_4:-3229498 Msa0143970:CDS
TGGAGTTCCAGTAAACTCCG+CGG 0.773211 1_4:-3229511 Msa0143970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATATATGTTTAGATTTA+CGG - chr1_4:3227763-3227782 Msa0143970:intron 10.0%
!!! ATATATTGTTATTATTTTCT+TGG - chr1_4:3227947-3227966 Msa0143970:intron 10.0%
!! AAACAATAATACTATAAAAC+AGG - chr1_4:3223695-3223714 Msa0143970:intron 15.0%
!! AAATAATAATCTATCTACAT+TGG - chr1_4:3223960-3223979 Msa0143970:CDS 15.0%
!! ACTAAAATTTGTATATTGAT+AGG + chr1_4:3226104-3226123 None:intergenic 15.0%
!!! AAATTTTAGTATTTTTCGAT+TGG - chr1_4:3226114-3226133 Msa0143970:CDS 15.0%
!! GATTATTGAAAAAAAAAATG+AGG - chr1_4:3226149-3226168 Msa0143970:intron 15.0%
!!! ATAATATTTTCCTTTACAAA+AGG + chr1_4:3226793-3226812 None:intergenic 15.0%
!!! TTATGTATATTTTTACTTTG+AGG - chr1_4:3227068-3227087 Msa0143970:intron 15.0%
!! ATAAAGAAAGATAATCAATT+AGG + chr1_4:3227464-3227483 None:intergenic 15.0%
!! AATTATCCTATATAAGATAA+TGG + chr1_4:3227494-3227513 None:intergenic 15.0%
!!! TCTCTTAAATTTAAAATCAT+TGG - chr1_4:3228239-3228258 Msa0143970:intron 15.0%
!!! TGATTATTTTTTATAATGGA+TGG + chr1_4:3228275-3228294 None:intergenic 15.0%
!!! AGAGTGATTATTTTTTATAA+TGG + chr1_4:3228279-3228298 None:intergenic 15.0%
!! ACATATAAAAAAATTATCCT+AGG - chr1_4:3229001-3229020 Msa0143970:intron 15.0%
!! TTCTGTTTGGTTAAAAATAA+CGG - chr1_4:3222915-3222934 Msa0143970:intron 20.0%
!! CTTATTAAATTTGTAGTGTT+TGG - chr1_4:3222987-3223006 Msa0143970:intron 20.0%
!!! TTTTTTTGAATTAAGAGTGT+AGG - chr1_4:3223079-3223098 Msa0143970:intron 20.0%
!!! TTTTTTGAATTAAGAGTGTA+GGG - chr1_4:3223080-3223099 Msa0143970:intron 20.0%
!! TGAATTAAATTTGTAGTGTT+TGG - chr1_4:3223370-3223389 Msa0143970:intron 20.0%
!!! TGAAATTTTTTCTTCTCAAT+TGG + chr1_4:3223614-3223633 None:intergenic 20.0%
!!! TTTTATAATATAAGACCAAG+AGG - chr1_4:3223741-3223760 Msa0143970:intron 20.0%
!!! TTAAATCATTTCAAGTAGTA+AGG + chr1_4:3223906-3223925 None:intergenic 20.0%
!! TTATTTATGATAAGTGTAAC+AGG + chr1_4:3223946-3223965 None:intergenic 20.0%
!!! TTATTTGTCTCTTCAATTTT+GGG + chr1_4:3224003-3224022 None:intergenic 20.0%
!!! ATTATTTGTCTCTTCAATTT+TGG + chr1_4:3224004-3224023 None:intergenic 20.0%
!! AAAACACTTGTAAATATTAG+CGG - chr1_4:3224326-3224345 Msa0143970:intron 20.0%
!! ATCAATTCAATCAATTTAGA+TGG - chr1_4:3224675-3224694 Msa0143970:intron 20.0%
!! TTTCAGTATTAGAAATTGTA+GGG + chr1_4:3224903-3224922 None:intergenic 20.0%
!! ATTTCAGTATTAGAAATTGT+AGG + chr1_4:3224904-3224923 None:intergenic 20.0%
!! TACAATTTCTAATACTGAAA+TGG - chr1_4:3224903-3224922 Msa0143970:intron 20.0%
!!! AAATTTTACCATACAAGAAA+AGG + chr1_4:3224967-3224986 None:intergenic 20.0%
!!! TTTTGTTCTTTGATATTGTA+AGG - chr1_4:3225541-3225560 Msa0143970:intron 20.0%
!! TTTGTTCTTTGATATTGTAA+GGG - chr1_4:3225542-3225561 Msa0143970:intron 20.0%
!!! TTTGTCATTTTGTAGATTTA+TGG - chr1_4:3225770-3225789 Msa0143970:intron 20.0%
!!! TTGTCATTTTGTAGATTTAT+GGG - chr1_4:3225771-3225790 Msa0143970:intron 20.0%
!!! GCTAAATAAAACAACTTTTT+TGG + chr1_4:3225889-3225908 None:intergenic 20.0%
!!! CTTTAATCTTGATTTCTTTT+AGG + chr1_4:3226202-3226221 None:intergenic 20.0%
!!! AGACTAAGAAATATAAGTTT+TGG - chr1_4:3226504-3226523 Msa0143970:intron 20.0%
!! CTAAATAACATTTACAAATG+TGG + chr1_4:3226723-3226742 None:intergenic 20.0%
!!! TTTTCTAAAGAGAAAAGAAA+CGG + chr1_4:3227664-3227683 None:intergenic 20.0%
!!! TTCTCTTTAGAAAAAAAGAT+AGG - chr1_4:3227670-3227689 Msa0143970:CDS 20.0%
!!! ATTCTGTCATTTCATAAATT+TGG + chr1_4:3228217-3228236 None:intergenic 20.0%
!! GAAGAATTCAAATCAATAAA+TGG - chr1_4:3228316-3228335 Msa0143970:intron 20.0%
!! CAAAAAACAAGTGAATTATT+TGG + chr1_4:3229117-3229136 None:intergenic 20.0%
!!! CAAATAATTCACTTGTTTTT+TGG - chr1_4:3229115-3229134 Msa0143970:intron 20.0%
!! TTCATCATTGCAATAATTAA+GGG + chr1_4:3229331-3229350 None:intergenic 20.0%
!! ATTCATCATTGCAATAATTA+AGG + chr1_4:3229332-3229351 None:intergenic 20.0%
!!! GAAAGCAATTTAATTTTTGT+TGG + chr1_4:3229421-3229440 None:intergenic 20.0%
!!! AGTTTTTGAGAAAGTTGAAT+TGG - chr1_4:3222687-3222706 Msa0143970:intron 25.0%
!!! GTTTTTGAGAAAGTTGAATT+GGG - chr1_4:3222688-3222707 Msa0143970:intron 25.0%
!!! TGGTTAAAAATAACGGATAA+TGG - chr1_4:3222922-3222941 Msa0143970:intron 25.0%
!!! TTTTTGAATTAAGAGTGTAG+GGG - chr1_4:3223081-3223100 Msa0143970:intron 25.0%
!! CTTATCTGTTGACTAATATA+AGG + chr1_4:3223328-3223347 None:intergenic 25.0%
! AGCTTAATGCATAAACATTT+CGG + chr1_4:3224184-3224203 None:intergenic 25.0%
!! TCCAAAAATAGTTTTTGTAC+TGG - chr1_4:3224579-3224598 Msa0143970:intron 25.0%
!! TCCAGTACAAAAACTATTTT+TGG + chr1_4:3224583-3224602 None:intergenic 25.0%
! CAGTCCTCAAATTTATAAAA+CGG + chr1_4:3224869-3224888 None:intergenic 25.0%
!! TGGTGATTACTTCTATATTT+TGG - chr1_4:3224923-3224942 Msa0143970:intron 25.0%
! GAAAAGGATAAATAGAAGAA+CGG + chr1_4:3224951-3224970 None:intergenic 25.0%
!! CTATTTATCCTTTTCTTGTA+TGG - chr1_4:3224956-3224975 Msa0143970:intron 25.0%
!! AAAATTTCTTTCTTTTGCAC+AGG - chr1_4:3224980-3224999 Msa0143970:CDS 25.0%
!! AAATTTCTTTCTTTTGCACA+GGG - chr1_4:3224981-3225000 Msa0143970:CDS 25.0%
!!! GAATGCATTTTAGAATTTGA+TGG - chr1_4:3225245-3225264 Msa0143970:intron 25.0%
! AAGATAAAGAAAGGAACAAA+GGG - chr1_4:3225327-3225346 Msa0143970:intron 25.0%
! TAGTGATTTACTTGTTTGAA+GGG + chr1_4:3225521-3225540 None:intergenic 25.0%
! ATAGTGATTTACTTGTTTGA+AGG + chr1_4:3225522-3225541 None:intergenic 25.0%
!! GAGTTGATTGAATTAATTGA+CGG + chr1_4:3225586-3225605 None:intergenic 25.0%
!! AGTTTCTGGAAATTTGTTTA+GGG + chr1_4:3225646-3225665 None:intergenic 25.0%
!! AAGTTTCTGGAAATTTGTTT+AGG + chr1_4:3225647-3225666 None:intergenic 25.0%
! GCAACATTTAGAAGATTAAA+TGG - chr1_4:3225814-3225833 Msa0143970:intron 25.0%
!! TAATCTTGATTTCTTTTAGG+AGG + chr1_4:3226199-3226218 None:intergenic 25.0%
!!! GTTTTTTTTATCAGTACCTA+TGG + chr1_4:3226318-3226337 None:intergenic 25.0%
!! TTACTTAGGAGTACAATTAT+TGG - chr1_4:3226376-3226395 Msa0143970:intron 25.0%
! TTTACCTTAATAAATGAGCA+AGG + chr1_4:3227024-3227043 None:intergenic 25.0%
!! AACTGAAGTGTTATAATAGT+TGG - chr1_4:3227152-3227171 Msa0143970:intron 25.0%
! GAATTGAAAGTTATAAGAGT+TGG - chr1_4:3227181-3227200 Msa0143970:intron 25.0%
!! AATATTTAAGCATTTGCTAG+AGG + chr1_4:3227288-3227307 None:intergenic 25.0%
! TCTTATGATGTAGATAATTG+TGG + chr1_4:3227312-3227331 None:intergenic 25.0%
! TTGATTGCAGTATATTGAAT+TGG - chr1_4:3227423-3227442 Msa0143970:intron 25.0%
! AGAAAGATAATCAATTAGGA+AGG + chr1_4:3227460-3227479 None:intergenic 25.0%
! AAAGACAAAAGAATCATACA+AGG - chr1_4:3227635-3227654 Msa0143970:CDS 25.0%
!! TCTTTAGAAAAAAAGATAGG+CGG - chr1_4:3227673-3227692 Msa0143970:CDS 25.0%
!! TATCAGTAATGCTACTATTT+TGG - chr1_4:3227702-3227721 Msa0143970:CDS 25.0%
! ACACAACTTTCAAATTTACA+TGG + chr1_4:3227908-3227927 None:intergenic 25.0%
!!! TTGTTATTATTTTCTTGGTG+CGG - chr1_4:3227952-3227971 Msa0143970:intron 25.0%
!! TTTTACGATCAATGATTTCT+AGG + chr1_4:3228047-3228066 None:intergenic 25.0%
! AGAAATCATTGATCGTAAAA+AGG - chr1_4:3228047-3228066 Msa0143970:intron 25.0%
! ACTTGAAAAACAATTGTGAA+TGG + chr1_4:3228144-3228163 None:intergenic 25.0%
! CTTAAAAGTCATACAAATGA+TGG - chr1_4:3228471-3228490 Msa0143970:intron 25.0%
!!! ATATTTTGCTGTTGATTTAG+CGG + chr1_4:3228925-3228944 None:intergenic 25.0%
!!! GAATGCATATTTTGAACTTA+CGG - chr1_4:3229242-3229261 Msa0143970:CDS 25.0%
! GTAGTTTATGAAATATTTGC+AGG - chr1_4:3229360-3229379 Msa0143970:CDS 25.0%
! TTATTTGGATGTATCTATTG+AGG - chr1_4:3229559-3229578 Msa0143970:CDS 25.0%
! TATTTGGATGTATCTATTGA+GGG - chr1_4:3229560-3229579 Msa0143970:CDS 25.0%
! AAATTCATGCATCAAATAAC+AGG - chr1_4:3229632-3229651 Msa0143970:five_prime_UTR 25.0%
! AATTCATGCATCAAATAACA+GGG - chr1_4:3229633-3229652 Msa0143970:five_prime_UTR 25.0%
! CTTTAATTAATCATCTGTGA+TGG + chr1_4:3229692-3229711 None:intergenic 25.0%
!! TACTCAGAAAATTGGTGTTT+TGG + chr1_4:3222337-3222356 None:intergenic 30.0%
GAAGAAGTTACTCAGAAAAT+TGG + chr1_4:3222345-3222364 None:intergenic 30.0%
GAATAAACTTAGCTTCTGTT+TGG - chr1_4:3222902-3222921 Msa0143970:intron 30.0%
GTAGTGTTTGGTTAGATTAA+CGG - chr1_4:3223382-3223401 Msa0143970:intron 30.0%
CACGTAGATATGAAAATGAT+AGG - chr1_4:3223829-3223848 Msa0143970:intron 30.0%
! TTAGTTGGTATGCAATGTTA+GGG + chr1_4:3223881-3223900 None:intergenic 30.0%
! TTTAGTTGGTATGCAATGTT+AGG + chr1_4:3223882-3223901 None:intergenic 30.0%
TCAAGTAGTAAGGATTTAGT+TGG + chr1_4:3223896-3223915 None:intergenic 30.0%
! ATACTTAAGTTTTCTGCTTC+AGG - chr1_4:3224054-3224073 Msa0143970:intron 30.0%
! TACTTAAGTTTTCTGCTTCA+GGG - chr1_4:3224055-3224074 Msa0143970:intron 30.0%
TTTATGTCACTCATTGAATG+AGG - chr1_4:3224135-3224154 Msa0143970:intron 30.0%
GTTTATGCATTAAGCTGTTA+TGG - chr1_4:3224188-3224207 Msa0143970:intron 30.0%
ATTGACGATCTTCAATTTCA+AGG + chr1_4:3224636-3224655 None:intergenic 30.0%
!!! CATGCCGTTTTATAAATTTG+AGG - chr1_4:3224862-3224881 Msa0143970:intron 30.0%
! ACATCCTTTTTCTCAAGTTT+GGG + chr1_4:3225065-3225084 None:intergenic 30.0%
! TACATCCTTTTTCTCAAGTT+TGG + chr1_4:3225066-3225085 None:intergenic 30.0%
AAACACAAGAAAATGGAAAC+AGG + chr1_4:3225207-3225226 None:intergenic 30.0%
CACACAAAAACACAAGAAAA+TGG + chr1_4:3225214-3225233 None:intergenic 30.0%
!! ATTCTAAAATGCATTCGAGT+TGG + chr1_4:3225241-3225260 None:intergenic 30.0%
ACATCAAGCAAGATAAAGAA+AGG - chr1_4:3225318-3225337 Msa0143970:intron 30.0%
CAAGATAAAGAAAGGAACAA+AGG - chr1_4:3225326-3225345 Msa0143970:intron 30.0%
AGATAAAGAAAGGAACAAAG+GGG - chr1_4:3225328-3225347 Msa0143970:intron 30.0%
!!! TGTTTTATTTAGCCTATGAG+AGG - chr1_4:3225896-3225915 Msa0143970:intron 30.0%
AAAAAAATCCGAGCAATTCT+TGG - chr1_4:3225994-3226013 Msa0143970:CDS 30.0%
AGTTCATCAATATCTGTCTT+GGG - chr1_4:3226073-3226092 Msa0143970:CDS 30.0%
TTAAAAACACAAGCTAGACT+AGG - chr1_4:3226223-3226242 Msa0143970:intron 30.0%
! TTTTTATCAGTACCTATGGT+TGG + chr1_4:3226314-3226333 None:intergenic 30.0%
! TAATAGCCTGTCATTTACTT+AGG - chr1_4:3226362-3226381 Msa0143970:intron 30.0%
TCGGCATAACAGAATAAAAT+AGG + chr1_4:3226451-3226470 None:intergenic 30.0%
AAATCTGTTGAGTGCTAAAT+GGG - chr1_4:3226533-3226552 Msa0143970:intron 30.0%
!! TTAGCTGTATAAAAGTGTTC+TGG + chr1_4:3226600-3226619 None:intergenic 30.0%
!! GCTATTGAAGTTTGTTAGTT+TGG + chr1_4:3226652-3226671 None:intergenic 30.0%
GTTATTTAGCGTAAATGACA+AGG - chr1_4:3226734-3226753 Msa0143970:intron 30.0%
ACAACTTTATCATTGCACTA+TGG - chr1_4:3226759-3226778 Msa0143970:intron 30.0%
!! GATTTTGATGATACATCTGT+TGG - chr1_4:3226979-3226998 Msa0143970:CDS 30.0%
TTAATAAATGAGCAAGGAAG+AGG + chr1_4:3227018-3227037 None:intergenic 30.0%
TCTTCCTTGCTCATTTATTA+AGG - chr1_4:3227017-3227036 Msa0143970:intron 30.0%
! TGAAGTGTTATAATAGTTGG+TGG - chr1_4:3227155-3227174 Msa0143970:intron 30.0%
!! AAAAAGGTTCCTCTAAAATG+AGG + chr1_4:3227244-3227263 None:intergenic 30.0%
TCTACATCATAAGATGTGAT+AGG - chr1_4:3227318-3227337 Msa0143970:intron 30.0%
! ATCCTATATAAGATAATGGC+AGG + chr1_4:3227490-3227509 None:intergenic 30.0%
TTAGTTAAATATCCACCTTC+AGG + chr1_4:3227540-3227559 None:intergenic 30.0%
! CTTTAGAAAAAAAGATAGGC+GGG - chr1_4:3227674-3227693 Msa0143970:CDS 30.0%
!! AGTAATGCTACTATTTTGGA+TGG - chr1_4:3227706-3227725 Msa0143970:intron 30.0%
AACATATATTAAACCTGTCG+TGG + chr1_4:3227755-3227774 None:intergenic 30.0%
TGAGTTTGACAAAATCATTG+TGG + chr1_4:3227866-3227885 None:intergenic 30.0%
TTGATGAAAAAGGAATGAGA+TGG - chr1_4:3227980-3227999 Msa0143970:intron 30.0%
GTAAGAATCTGATCATTTAG+TGG - chr1_4:3228190-3228209 Msa0143970:intron 30.0%
TTCTTCTACTGATGATAGTT+TGG + chr1_4:3228302-3228321 None:intergenic 30.0%
ACAAATGATGGTTTATGAAC+TGG - chr1_4:3228483-3228502 Msa0143970:intron 30.0%
! TTGTATTTTTCATCTGCAAC+TGG - chr1_4:3228594-3228613 Msa0143970:intron 30.0%
! GCAACTGGTTTATTAAATAC+AGG - chr1_4:3228609-3228628 Msa0143970:intron 30.0%
GGTTTATTAAATACAGGTTG+AGG - chr1_4:3228615-3228634 Msa0143970:intron 30.0%
CAACATTATATTGTCCACAT+AGG + chr1_4:3228659-3228678 None:intergenic 30.0%
AATCAAGGAATTCCTTATTC+AGG - chr1_4:3228754-3228773 Msa0143970:intron 30.0%
!! AGTTCTGAAAAACCTGAATA+AGG + chr1_4:3228769-3228788 None:intergenic 30.0%
GCTAAATCAACAGCAAAATA+TGG - chr1_4:3228924-3228943 Msa0143970:intron 30.0%
!!! GAGCAAATTTTTTACGCTTT+GGG - chr1_4:3228946-3228965 Msa0143970:intron 30.0%
ATGGTATAAACCGTTATAGA+TGG - chr1_4:3229079-3229098 Msa0143970:intron 30.0%
TCAACTTAAGCCATCTATAA+CGG + chr1_4:3229092-3229111 None:intergenic 30.0%
GTACAATGTATGTTAGTAGT+AGG + chr1_4:3229176-3229195 None:intergenic 30.0%
TTAAATTGCTTTCTGATCCA+TGG - chr1_4:3229428-3229447 Msa0143970:CDS 30.0%
TCATAGGCTAACTAGTTATT+TGG - chr1_4:3229544-3229563 Msa0143970:CDS 30.0%
AAATGAAGAGAAAAACACTC+AGG - chr1_4:3229601-3229620 Msa0143970:exon 30.0%
ATTCATGCATCAAATAACAG+GGG - chr1_4:3229634-3229653 Msa0143970:five_prime_UTR 30.0%
! AGTATGATGGTGACAATGTA+GGG + chr1_4:3222409-3222428 None:intergenic 35.0%
! AATTGTTTGAAGAAGCATGC+AGG - chr1_4:3222584-3222603 Msa0143970:CDS 35.0%
TTGAATTGGGTGAGTATGAA+TGG - chr1_4:3222701-3222720 Msa0143970:intron 35.0%
! TCGTATGATGAAGCTTTTGA+TGG - chr1_4:3222727-3222746 Msa0143970:intron 35.0%
! TTGGGATTTTTGCTGATACT+AGG - chr1_4:3222806-3222825 Msa0143970:intron 35.0%
! TGGGATTTTTGCTGATACTA+GGG - chr1_4:3222807-3222826 Msa0143970:intron 35.0%
ATCAGAAATTCGCTAAGAAG+TGG + chr1_4:3222867-3222886 None:intergenic 35.0%
GTTACCAATAATACTGCACA+CGG - chr1_4:3223567-3223586 Msa0143970:intron 35.0%
! TAAGACCAAGAGGATACTTT+TGG - chr1_4:3223751-3223770 Msa0143970:intron 35.0%
TACGTGTGAAATTTGATTGC+AGG + chr1_4:3223815-3223834 None:intergenic 35.0%
TGTAACGATGTATGCATCAT+TGG - chr1_4:3224102-3224121 Msa0143970:intron 35.0%
GTAACGATGTATGCATCATT+GGG - chr1_4:3224103-3224122 Msa0143970:intron 35.0%
TAAACATTTCGGTGAGACAA+AGG + chr1_4:3224173-3224192 None:intergenic 35.0%
GCAGTTATCATGTATACAAG+TGG - chr1_4:3224509-3224528 Msa0143970:intron 35.0%
! ATGTATACAAGTGGAAGTAC+TGG - chr1_4:3224518-3224537 Msa0143970:intron 35.0%
TGATTGAATTGATCGACAGA+TGG + chr1_4:3224668-3224687 None:intergenic 35.0%
TGTTCCCAAACTTGAGAAAA+AGG - chr1_4:3225058-3225077 Msa0143970:CDS 35.0%
ATATCTAGCATACTTGCCAA+TGG - chr1_4:3225085-3225104 Msa0143970:intron 35.0%
AAAGGAGATCCATATCCTAT+AGG + chr1_4:3225285-3225304 None:intergenic 35.0%
GATAAAGAAAGGAACAAAGG+GGG - chr1_4:3225329-3225348 Msa0143970:intron 35.0%
! TGTGTTGATGCCAACTTTAT+TGG - chr1_4:3225359-3225378 Msa0143970:intron 35.0%
ACACATGAAGCATATGAGAT+AGG + chr1_4:3225469-3225488 None:intergenic 35.0%
TACTTGTTTGAAGGGAAGTT+TGG + chr1_4:3225513-3225532 None:intergenic 35.0%
TCAATCAACTCTGATGAATC+TGG - chr1_4:3225595-3225614 Msa0143970:intron 35.0%
TTTATTTAGCCTATGAGAGG+AGG - chr1_4:3225899-3225918 Msa0143970:intron 35.0%
CAGTTCATCAATATCTGTCT+TGG - chr1_4:3226072-3226091 Msa0143970:CDS 35.0%
TGTACTCCTAAGTAAATGAC+AGG + chr1_4:3226371-3226390 None:intergenic 35.0%
AGTCTGATTCATTCTTAAGC+TGG + chr1_4:3226489-3226508 None:intergenic 35.0%
GAAATCTGTTGAGTGCTAAA+TGG - chr1_4:3226532-3226551 Msa0143970:intron 35.0%
CAAATGTGGAATTGCAATGT+GGG + chr1_4:3226709-3226728 None:intergenic 35.0%
ACAAATGTGGAATTGCAATG+TGG + chr1_4:3226710-3226729 None:intergenic 35.0%
!! GGCTTTTTCTCCTTTTGTAA+AGG - chr1_4:3226780-3226799 Msa0143970:intron 35.0%
!!! ATCTAGCTCTTTTAAAGCAG+AGG - chr1_4:3227112-3227131 Msa0143970:intron 35.0%
! TTCACAACTCCTCATTTTAG+AGG - chr1_4:3227232-3227251 Msa0143970:intron 35.0%
AGCCTGCCATTATCTTATAT+AGG - chr1_4:3227485-3227504 Msa0143970:CDS 35.0%
!! TGTTTTGTTAGCTAATCGAC+TGG - chr1_4:3227514-3227533 Msa0143970:CDS 35.0%
AAGTAACCAAGAGTGACATT+TGG + chr1_4:3227603-3227622 None:intergenic 35.0%
TAGATTTACGGTGAGTTTAG+TGG - chr1_4:3227775-3227794 Msa0143970:intron 35.0%
AGATTTACGGTGAGTTTAGT+GGG - chr1_4:3227776-3227795 Msa0143970:intron 35.0%
TTAGTATCATACCTTTCCCA+AGG + chr1_4:3228106-3228125 None:intergenic 35.0%
!! CTCTAAAGAAGAAAGCATCA+AGG - chr1_4:3228792-3228811 Msa0143970:intron 35.0%
!! TAAAGAAGAAAGCATCAAGG+AGG - chr1_4:3228795-3228814 Msa0143970:intron 35.0%
GTTAGAGGATTGTGATATGA+AGG + chr1_4:3228846-3228865 None:intergenic 35.0%
ACAATCCTCTAACTACATAG+TGG - chr1_4:3228853-3228872 Msa0143970:intron 35.0%
CATTACCACTATGTAGTTAG+AGG + chr1_4:3228861-3228880 None:intergenic 35.0%
!!! GGAGCAAATTTTTTACGCTT+TGG - chr1_4:3228945-3228964 Msa0143970:intron 35.0%
TGCTCTTATTCAAACAACCT+AGG + chr1_4:3229021-3229040 None:intergenic 35.0%
CTTCAAAGTTCAAGCTAAGA+TGG - chr1_4:3229060-3229079 Msa0143970:intron 35.0%
GATCCATCATGGATTCTTAA+GGG + chr1_4:3229154-3229173 None:intergenic 35.0%
GACTCTCTAAATACTGTCTT+TGG - chr1_4:3229264-3229283 Msa0143970:CDS 35.0%
ATAACTTCAGAAGATCTTCC+TGG + chr1_4:3229519-3229538 None:intergenic 35.0%
! TCTGAAGTTATACGCTTCAT+AGG - chr1_4:3229528-3229547 Msa0143970:CDS 35.0%
! GAGTATGATGGTGACAATGT+AGG + chr1_4:3222410-3222429 None:intergenic 40.0%
CATACGGAGAGATTACTGTT+GGG - chr1_4:3222610-3222629 Msa0143970:intron 40.0%
ATTACTGTTGGGAACAAGAG+TGG - chr1_4:3222621-3222640 Msa0143970:intron 40.0%
! AACAAGAGTGGTTGTTTCGA+AGG - chr1_4:3222633-3222652 Msa0143970:intron 40.0%
! AGTGGTTGTTTCGAAGGAAA+TGG - chr1_4:3222639-3222658 Msa0143970:intron 40.0%
!! TGTGAGATTTGCTAGTGGTT+TGG - chr1_4:3222753-3222772 Msa0143970:intron 40.0%
AATTACGAACCTGAAGAGCA+AGG + chr1_4:3222843-3222862 None:intergenic 40.0%
TTGTCCGTGTGCAGTATTAT+TGG + chr1_4:3223574-3223593 None:intergenic 40.0%
!! GCATACCAAAAGTATCCTCT+TGG + chr1_4:3223759-3223778 None:intergenic 40.0%
! TGTCTCTTCAATTTTGGGCT+GGG + chr1_4:3223998-3224017 None:intergenic 40.0%
! TTGTCTCTTCAATTTTGGGC+TGG + chr1_4:3223999-3224018 None:intergenic 40.0%
TCGGTGAGACAAAGGAAAAA+TGG + chr1_4:3224165-3224184 None:intergenic 40.0%
AATTCTGTTGTTGCAGACAG+AGG - chr1_4:3224271-3224290 Msa0143970:intron 40.0%
! AGGTCACGACAGTAATTTGT+GGG - chr1_4:3224291-3224310 Msa0143970:intron 40.0%
AGTGAAACGTGTGATATGCA+TGG - chr1_4:3224361-3224380 Msa0143970:CDS 40.0%
AAGTCGCTTAACATCTGCAA+AGG + chr1_4:3224441-3224460 None:intergenic 40.0%
TTTGCAGATGTTAAGCGACT+TGG - chr1_4:3224440-3224459 Msa0143970:CDS 40.0%
AGAGGTAAATCAGCATCAAC+AGG + chr1_4:3224476-3224495 None:intergenic 40.0%
TGATAACTGCAACATCAGCT+GGG + chr1_4:3224499-3224518 None:intergenic 40.0%
ATGATAACTGCAACATCAGC+TGG + chr1_4:3224500-3224519 None:intergenic 40.0%
!! TGGAAGTACTGGATTACCTA+AGG - chr1_4:3224529-3224548 Msa0143970:intron 40.0%
! AGTACTGGATTACCTAAGGT+TGG - chr1_4:3224533-3224552 Msa0143970:intron 40.0%
GTGAAAGGAAATCCAACCTT+AGG + chr1_4:3224548-3224567 None:intergenic 40.0%
TGGACTGTCAATCTAGTGAA+AGG + chr1_4:3224563-3224582 None:intergenic 40.0%
AGTTCAAGGATATGAGCCAT+TGG + chr1_4:3225104-3225123 None:intergenic 40.0%
! TAGAATTTGATGGCAGCAGT+TGG - chr1_4:3225255-3225274 Msa0143970:intron 40.0%
! AGAATTTGATGGCAGCAGTT+GGG - chr1_4:3225256-3225275 Msa0143970:intron 40.0%
GTTGGGATACCTATAGGATA+TGG - chr1_4:3225273-3225292 Msa0143970:intron 40.0%
CTTGCTTGATGTATCTGTGA+GGG + chr1_4:3225310-3225329 None:intergenic 40.0%
TCTTGCTTGATGTATCTGTG+AGG + chr1_4:3225311-3225330 None:intergenic 40.0%
CATGAAGCATATGAGATAGG+TGG + chr1_4:3225466-3225485 None:intergenic 40.0%
CATATGCTTCATGTGTGTGT+TGG - chr1_4:3225473-3225492 Msa0143970:intron 40.0%
! GCTCATTTGAAGCAAGTTTC+TGG + chr1_4:3225660-3225679 None:intergenic 40.0%
ACTTGCTTCATTGCCAATGT+AGG - chr1_4:3225843-3225862 Msa0143970:intron 40.0%
AGGAGGTTGAAAGCAGTTAA+TGG - chr1_4:3225916-3225935 Msa0143970:CDS 40.0%
TGAAAGCAGTTAATGGAAGC+TGG - chr1_4:3225923-3225942 Msa0143970:CDS 40.0%
AAAATCCGAGCAATTCTTGG+TGG - chr1_4:3225997-3226016 Msa0143970:CDS 40.0%
! TTATGCCGATTGAGCATTAG+AGG - chr1_4:3226462-3226481 Msa0143970:intron 40.0%
! TGTTGAGTGCTAAATGGGTT+TGG - chr1_4:3226538-3226557 Msa0143970:intron 40.0%
!!! CATCCTTTGAGCTAGCTTTT+GGG + chr1_4:3226571-3226590 None:intergenic 40.0%
!!! TCATCCTTTGAGCTAGCTTT+TGG + chr1_4:3226572-3226591 None:intergenic 40.0%
AAAAGCTAGCTCAAAGGATG+AGG - chr1_4:3226571-3226590 Msa0143970:intron 40.0%
! CTTTTATACAGCTAACAGCC+CGG - chr1_4:3226605-3226624 Msa0143970:CDS 40.0%
! TTTTATACAGCTAACAGCCC+GGG - chr1_4:3226606-3226625 Msa0143970:CDS 40.0%
AGACCATATCCTTGACCTAT+TGG + chr1_4:3226928-3226947 None:intergenic 40.0%
ATAAATGAGCAAGGAAGAGG+AGG + chr1_4:3227015-3227034 None:intergenic 40.0%
CCAATTACAATTTCTCCACG+AGG + chr1_4:3227576-3227595 None:intergenic 40.0%
CCTCGTGGAGAAATTGTAAT+TGG - chr1_4:3227573-3227592 Msa0143970:CDS 40.0%
CGTGGAGAAATTGTAATTGG+TGG - chr1_4:3227576-3227595 Msa0143970:CDS 40.0%
!! ATTATTTTCTTGGTGCGGCT+AGG - chr1_4:3227957-3227976 Msa0143970:intron 40.0%
ATAGGGAGGTTTCATCAAGA+TGG - chr1_4:3228018-3228037 Msa0143970:intron 40.0%
GACATTGTTAAACTGCAGCA+TGG - chr1_4:3228069-3228088 Msa0143970:intron 40.0%
! CATGGAGAGTATGTTTCCTT+GGG - chr1_4:3228087-3228106 Msa0143970:intron 40.0%
AGAGTATGTTTCCTTGGGAA+AGG - chr1_4:3228092-3228111 Msa0143970:intron 40.0%
TCTTATTGTCAGCTCCTATG+TGG - chr1_4:3228642-3228661 Msa0143970:intron 40.0%
CCACACAGTAACTATGGAAA+GGG + chr1_4:3228690-3228709 None:intergenic 40.0%
TCAGTCCACATTGGAAGAAT+GGG - chr1_4:3228726-3228745 Msa0143970:intron 40.0%
! GAAGAATGGGCTTCAAATCA+AGG - chr1_4:3228739-3228758 Msa0143970:intron 40.0%
CATCATGGATTCTTAAGGGT+AGG + chr1_4:3229150-3229169 None:intergenic 40.0%
CTACCCTTAAGAATCCATGA+TGG - chr1_4:3229148-3229167 Msa0143970:intron 40.0%
GGATCCATCATGGATTCTTA+AGG + chr1_4:3229155-3229174 None:intergenic 40.0%
GTTAGTAGTAGGATCCATCA+TGG + chr1_4:3229165-3229184 None:intergenic 40.0%
TAAGGGAACAAACAGATTGC+AGG + chr1_4:3229314-3229333 None:intergenic 40.0%
TTCCTGGAAAGTCTTTCTGA+CGG + chr1_4:3229503-3229522 None:intergenic 40.0%
! GAACAGAAGATTTGCTTCGC+CGG - chr1_4:3222525-3222544 Msa0143970:CDS 45.0%
! AGAAGCATGCAGGAAGCATA+CGG - chr1_4:3222594-3222613 Msa0143970:CDS 45.0%
GCATACGGAGAGATTACTGT+TGG - chr1_4:3222609-3222628 Msa0143970:CDS 45.0%
TCGAAGGAAATGGAGAAGAG+TGG - chr1_4:3222649-3222668 Msa0143970:intron 45.0%
AAGGAAATGGAGAAGAGTGG+TGG - chr1_4:3222652-3222671 Msa0143970:intron 45.0%
!! GGTGTTGTGAGATTTGCTAG+TGG - chr1_4:3222748-3222767 Msa0143970:intron 45.0%
ATGGAAAGGATGAGAGGGTT+GGG - chr1_4:3222788-3222807 Msa0143970:intron 45.0%
TTGCTGATACTAGGGTTGAG+TGG - chr1_4:3222815-3222834 Msa0143970:intron 45.0%
! TTCTGCTTCAGGGTTGTTTC+AGG - chr1_4:3224065-3224084 Msa0143970:intron 45.0%
GATGTATGCATCATTGGGAG+AGG - chr1_4:3224108-3224127 Msa0143970:intron 45.0%
GAGGTCACGACAGTAATTTG+TGG - chr1_4:3224290-3224309 Msa0143970:intron 45.0%
! CAACAGATGAGGCATCAGAT+GGG + chr1_4:3224397-3224416 None:intergenic 45.0%
TATCCTTGAACTAGCAGCTG+AGG - chr1_4:3225112-3225131 Msa0143970:intron 45.0%
ATACCTCAGCTGCTAGTTCA+AGG + chr1_4:3225118-3225137 None:intergenic 45.0%
ACTAGCAGCTGAGGTATGTA+AGG - chr1_4:3225121-3225140 Msa0143970:intron 45.0%
CTAGCAGCTGAGGTATGTAA+GGG - chr1_4:3225122-3225141 Msa0143970:intron 45.0%
TAGCAGCTGAGGTATGTAAG+GGG - chr1_4:3225123-3225142 Msa0143970:intron 45.0%
GATGTATCTGTGAGGGTCAA+AGG + chr1_4:3225303-3225322 None:intergenic 45.0%
GGTACAGCAGCCAATAAAGT+TGG + chr1_4:3225372-3225391 None:intergenic 45.0%
GAAGCATATGAGATAGGTGG+AGG + chr1_4:3225463-3225482 None:intergenic 45.0%
AAGGGAAGTTTGGATGCAAC+TGG + chr1_4:3225503-3225522 None:intergenic 45.0%
GCCAATGTAGGTGAATGCAA+CGG - chr1_4:3225855-3225874 Msa0143970:intron 45.0%
CCAATGTAGGTGAATGCAAC+GGG - chr1_4:3225856-3225875 Msa0143970:intron 45.0%
TGCTTTCAACCTCCTCTCAT+AGG + chr1_4:3225911-3225930 None:intergenic 45.0%
GCAGTTAATGGAAGCTGGTT+TGG - chr1_4:3225928-3225947 Msa0143970:CDS 45.0%
ATCCGTTTCATACTGTCTGG+TGG - chr1_4:3226024-3226043 Msa0143970:CDS 45.0%
CACCACCAGACAGTATGAAA+CGG + chr1_4:3226029-3226048 None:intergenic 45.0%
TGCTGAGTATCACCAGAAAG+GGG + chr1_4:3226054-3226073 None:intergenic 45.0%
CTGCTGAGTATCACCAGAAA+GGG + chr1_4:3226055-3226074 None:intergenic 45.0%
ACTGCTGAGTATCACCAGAA+AGG + chr1_4:3226056-3226075 None:intergenic 45.0%
CGTGATTTCTCTCCAACCAT+AGG - chr1_4:3226299-3226318 Msa0143970:intron 45.0%
CTGGTCCTCTAATGCTCAAT+CGG + chr1_4:3226470-3226489 None:intergenic 45.0%
CATCCCAAAAGCTAGCTCAA+AGG - chr1_4:3226565-3226584 Msa0143970:intron 45.0%
! TTTGGAGTCCCACATTGCTA+AGG + chr1_4:3226634-3226653 None:intergenic 45.0%
GCAATGTGGGAATTGAACTC+AGG + chr1_4:3226696-3226715 None:intergenic 45.0%
GTCATTTCCAGTGCTCCAAT+AGG - chr1_4:3226910-3226929 Msa0143970:CDS 45.0%
GCTCCAATAGGTCAAGGATA+TGG - chr1_4:3226922-3226941 Msa0143970:CDS 45.0%
ACAATTTCTCCACGAGGCAT+TGG + chr1_4:3227570-3227589 None:intergenic 45.0%
GAACTATATCTGTCCACGAC+AGG - chr1_4:3227739-3227758 Msa0143970:intron 45.0%
!! TGCGGCTAGGTTGATGAAAA+AGG - chr1_4:3227970-3227989 Msa0143970:intron 45.0%
! GGAATGAGATGGTTCTACAC+TGG - chr1_4:3227991-3228010 Msa0143970:intron 45.0%
! TGGTTCTACACTGGTGACAT+AGG - chr1_4:3228000-3228019 Msa0143970:intron 45.0%
GGTTCTACACTGGTGACATA+GGG - chr1_4:3228001-3228020 Msa0143970:intron 45.0%
! GCATGGAGAGTATGTTTCCT+TGG - chr1_4:3228086-3228105 Msa0143970:intron 45.0%
CCCTTTCCATAGTTACTGTG+TGG - chr1_4:3228687-3228706 Msa0143970:intron 45.0%
GCCACACAGTAACTATGGAA+AGG + chr1_4:3228691-3228710 None:intergenic 45.0%
CAAGTGCCACACAGTAACTA+TGG + chr1_4:3228696-3228715 None:intergenic 45.0%
! TTACTGTGTGGCACTTGTTG+TGG - chr1_4:3228699-3228718 Msa0143970:intron 45.0%
CTCAGTCCACATTGGAAGAA+TGG - chr1_4:3228725-3228744 Msa0143970:intron 45.0%
TGAAGCCCATTCTTCCAATG+TGG + chr1_4:3228734-3228753 None:intergenic 45.0%
GGTGCATGCATCACTAGTAA+AGG - chr1_4:3228816-3228835 Msa0143970:intron 45.0%
GGAAGCAAAGAAAGCTCGTT+TGG - chr1_4:3229381-3229400 Msa0143970:CDS 45.0%
AACAGGAGAGTTGCGAGGAT+GGG + chr1_4:3222433-3222452 None:intergenic 50.0%
CGGAGTTTACTGGAACTCCA+CGG + chr1_4:3222477-3222496 None:intergenic 50.0%
TGGAGTTCCAGTAAACTCCG+CGG - chr1_4:3222477-3222496 Msa0143970:CDS 50.0%
ATCAAGGTGGTGTGACAGTG+CGG - chr1_4:3222503-3222522 Msa0143970:CDS 50.0%
GTGGGAAGGAGTGAGTACAT+TGG - chr1_4:3222558-3222577 Msa0143970:CDS 50.0%
GGAAGGAGTGAGTACATTGG+CGG - chr1_4:3222561-3222580 Msa0143970:CDS 50.0%
! ATGGAGAAGAGTGGTGGTGA+TGG - chr1_4:3222658-3222677 Msa0143970:intron 50.0%
! TGCTAGTGGTTTGGCTGTGT+TGG - chr1_4:3222762-3222781 Msa0143970:intron 50.0%
! GCTAGTGGTTTGGCTGTGTT+GGG - chr1_4:3222763-3222782 Msa0143970:intron 50.0%
TGGGACATGGAAAGGATGAG+AGG - chr1_4:3222782-3222801 Msa0143970:intron 50.0%
GGGACATGGAAAGGATGAGA+GGG - chr1_4:3222783-3222802 Msa0143970:intron 50.0%
CATGGAAAGGATGAGAGGGT+TGG - chr1_4:3222787-3222806 Msa0143970:intron 50.0%
TGAGTGGTTCCTTGCTCTTC+AGG - chr1_4:3222831-3222850 Msa0143970:intron 50.0%
! CCAACAGATGAGGCATCAGA+TGG + chr1_4:3224398-3224417 None:intergenic 50.0%
CCATCTGATGCCTCATCTGT+TGG - chr1_4:3224395-3224414 Msa0143970:CDS 50.0%
GATGCCTCATCTGTTGGACA+CGG - chr1_4:3224401-3224420 Msa0143970:CDS 50.0%
GCAGCAGTTGGGATACCTAT+AGG - chr1_4:3225267-3225286 Msa0143970:intron 50.0%
CGAACACGGTCAAGAATTGC+TGG + chr1_4:3225393-3225412 None:intergenic 50.0%
ATTCTTGACCGTGTTCGCGA+TGG - chr1_4:3225396-3225415 Msa0143970:intron 50.0%
TGAACACTCCATCGCGAACA+CGG + chr1_4:3225407-3225426 None:intergenic 50.0%
! TCGCGATGGAGTGTTCAAGA+AGG - chr1_4:3225410-3225429 Msa0143970:intron 50.0%
CCCGTTGCATTCACCTACAT+TGG + chr1_4:3225859-3225878 None:intergenic 50.0%
ATGTAGGTGAATGCAACGGG+AGG - chr1_4:3225859-3225878 Msa0143970:intron 50.0%
TGCGACCACCAAGAATTGCT+CGG + chr1_4:3226005-3226024 None:intergenic 50.0%
CGCATCCGTTTCATACTGTC+TGG - chr1_4:3226021-3226040 Msa0143970:CDS 50.0%
ACTGTACGCGCAGATATGTC+AGG - chr1_4:3226336-3226355 Msa0143970:intron 50.0%
TCCCACATTGCTAAGGTTCC+CGG + chr1_4:3226627-3226646 None:intergenic 50.0%
TCCAGTGCTCCAATAGGTCA+AGG - chr1_4:3226916-3226935 Msa0143970:CDS 50.0%
TCCTTGACCTATTGGAGCAC+TGG + chr1_4:3226920-3226939 None:intergenic 50.0%
GGTCTTACAGAGACTTGTGC+TGG - chr1_4:3226943-3226962 Msa0143970:CDS 50.0%
CTTACAGAGACTTGTGCTGG+TGG - chr1_4:3226946-3226965 Msa0143970:CDS 50.0%
GATACATCTGTTGGCCGTGT+TGG - chr1_4:3226988-3227007 Msa0143970:CDS 50.0%
AAGGAAGAGGAGGTCCAACA+CGG + chr1_4:3227005-3227024 None:intergenic 50.0%
!! TAGCTAATCGACTGGCCTGA+AGG - chr1_4:3227522-3227541 Msa0143970:CDS 50.0%
GGTGGTCCAAATGTCACTCT+TGG - chr1_4:3227594-3227613 Msa0143970:CDS 50.0%
TCTACACTGGTGACATAGGG+AGG - chr1_4:3228004-3228023 Msa0143970:intron 50.0%
TGTGGCTTCTCAGTCCACAT+TGG - chr1_4:3228717-3228736 Msa0143970:intron 50.0%
TCGCCCACGTCAATCTTCAA+CGG - chr1_4:3229206-3229225 Msa0143970:CDS 50.0%
CCACCGTTGAAGATTGACGT+GGG + chr1_4:3229212-3229231 None:intergenic 50.0%
TCCACCGTTGAAGATTGACG+TGG + chr1_4:3229213-3229232 None:intergenic 50.0%
TGCTCTCAAGCTCAAGAGAG+AGG - chr1_4:3229477-3229496 Msa0143970:CDS 50.0%
! TGCGAGGATGGGGAGTATGA+TGG + chr1_4:3222422-3222441 None:intergenic 55.0%
ACAGGAGAGTTGCGAGGATG+GGG + chr1_4:3222432-3222451 None:intergenic 55.0%
GAACAGGAGAGTTGCGAGGA+TGG + chr1_4:3222434-3222453 None:intergenic 55.0%
TAGGGTGGTTAGTGCGGAAC+AGG + chr1_4:3222450-3222469 None:intergenic 55.0%
! GGCGTTTAGGGTGGTTAGTG+CGG + chr1_4:3222456-3222475 None:intergenic 55.0%
ACTAACCACCCTAAACGCCG+TGG - chr1_4:3222457-3222476 Msa0143970:exon 55.0%
CTGGAACTCCACGGCGTTTA+GGG + chr1_4:3222468-3222487 None:intergenic 55.0%
ACTGGAACTCCACGGCGTTT+AGG + chr1_4:3222469-3222488 None:intergenic 55.0%
TGATCGTCCGCGGAGTTTAC+TGG + chr1_4:3222487-3222506 None:intergenic 55.0%
GTAAACTCCGCGGACGATCA+AGG - chr1_4:3222487-3222506 Msa0143970:CDS 55.0%
! CAGAAGATTTGCTTCGCCGG+TGG - chr1_4:3222528-3222547 Msa0143970:CDS 55.0%
ATTTGCTTCGCCGGTGGAGA+CGG - chr1_4:3222534-3222553 Msa0143970:CDS 55.0%
!! GAGAAGAGTGGTGGTGATGG+TGG - chr1_4:3222661-3222680 Msa0143970:intron 55.0%
GGTTTGGCTGTGTTGGGACA+TGG - chr1_4:3222769-3222788 Msa0143970:intron 55.0%
GGCTGTGTTGGGACATGGAA+AGG - chr1_4:3222774-3222793 Msa0143970:intron 55.0%
ACTGCAACATCAGCTGGGAG+AGG + chr1_4:3224494-3224513 None:intergenic 55.0%
!! ATGGAAGCTGGTTTGGAGCC+TGG - chr1_4:3225935-3225954 Msa0143970:CDS 55.0%
!! TGGAAGCTGGTTTGGAGCCT+GGG - chr1_4:3225936-3225955 Msa0143970:CDS 55.0%
CCCACATTGCTAAGGTTCCC+GGG + chr1_4:3226626-3226645 None:intergenic 55.0%
CCCGGGAACCTTAGCAATGT+GGG - chr1_4:3226623-3226642 Msa0143970:CDS 55.0%
TCAATAGCCACCCTCACACC+TGG - chr1_4:3226664-3226683 Msa0143970:CDS 55.0%
!! CTAATCGACTGGCCTGAAGG+TGG - chr1_4:3227525-3227544 Msa0143970:CDS 55.0%
AATGACTCGCCAATGCCTCG+TGG - chr1_4:3227558-3227577 Msa0143970:CDS 55.0%
CCCACGTCAATCTTCAACGG+TGG - chr1_4:3229209-3229228 Msa0143970:CDS 55.0%
GATCCATGGACACCTGAGTC+TGG - chr1_4:3229442-3229461 Msa0143970:CDS 55.0%
AAGCCAGACTCAGGTGTCCA+TGG + chr1_4:3229448-3229467 None:intergenic 55.0%
GCAGTGACTAAGCCAGACTC+AGG + chr1_4:3229457-3229476 None:intergenic 55.0%
GGCCGTCAGAAAGACTTTCC+AGG - chr1_4:3229498-3229517 Msa0143970:CDS 55.0%
TGCGGAACAGGAGAGTTGCG+AGG + chr1_4:3222438-3222457 None:intergenic 60.0%
GAACTCCACGGCGTTTAGGG+TGG + chr1_4:3222465-3222484 None:intergenic 60.0%
AACTCCGCGGACGATCAAGG+TGG - chr1_4:3222490-3222509 Msa0143970:CDS 60.0%
CACACCACCTTGATCGTCCG+CGG + chr1_4:3222497-3222516 None:intergenic 60.0%
CCAGCCGTGTCCAACAGATG+AGG + chr1_4:3224408-3224427 None:intergenic 60.0%
CCTCATCTGTTGGACACGGC+TGG - chr1_4:3224405-3224424 Msa0143970:CDS 60.0%
!! GGAAGCTGGTTTGGAGCCTG+GGG - chr1_4:3225937-3225956 Msa0143970:CDS 60.0%
GGGCTTGGAGAAGGCTCTCT+GGG - chr1_4:3225957-3225976 Msa0143970:CDS 60.0%
! TCTGGTGGTGCTCCCCTTTC+TGG - chr1_4:3226039-3226058 Msa0143970:CDS 60.0%
GCCCGGGAACCTTAGCAATG+TGG - chr1_4:3226622-3226641 Msa0143970:CDS 60.0%
ATTGAACTCAGGCCCACGCC+AGG + chr1_4:3226685-3226704 None:intergenic 60.0%
!! CTGGTTTGGAGCCTGGGGCT+TGG - chr1_4:3225942-3225961 Msa0143970:CDS 65.0%
TGGAGCCTGGGGCTTGGAGA+AGG - chr1_4:3225948-3225967 Msa0143970:CDS 65.0%
GAGAGCCTTCTCCAAGCCCC+AGG + chr1_4:3225956-3225975 None:intergenic 65.0%
GGGGCTTGGAGAAGGCTCTC+TGG - chr1_4:3225956-3225975 Msa0143970:CDS 65.0%
TTCGCCGGTGGAGACGGCGT+GGG - chr1_4:3222540-3222559 Msa0143970:CDS 70.0%
CCTTCCCACGCCGTCTCCAC+CGG + chr1_4:3222547-3222566 None:intergenic 70.0%
AGCCACCCTCACACCTGGCG+TGG - chr1_4:3226669-3226688 Msa0143970:CDS 70.0%
GCCACCCTCACACCTGGCGT+GGG - chr1_4:3226670-3226689 Msa0143970:CDS 70.0%
CAGGCCCACGCCAGGTGTGA+GGG + chr1_4:3226677-3226696 None:intergenic 70.0%
TCAGGCCCACGCCAGGTGTG+AGG + chr1_4:3226678-3226697 None:intergenic 70.0%
CTTCGCCGGTGGAGACGGCG+TGG - chr1_4:3222539-3222558 Msa0143970:CDS 75.0%
CCGGTGGAGACGGCGTGGGA+AGG - chr1_4:3222544-3222563 Msa0143970:CDS 75.0%
GCCCACGCCAGGTGTGAGGG+TGG + chr1_4:3226674-3226693 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 3222268 3229742 3222268 ID=Msa0143970;Name=Msa0143970
chr1_4 mRNA 3222268 3229742 3222268 ID=Msa0143970-mRNA-1;Parent=Msa0143970;Name=Msa0143970-mRNA-1;_AED=0.03;_eAED=0.03;_QI=132|1|1|1|1|1|11|193|697
chr1_4 exon 3222268 3222628 3222268 ID=Msa0143970-mRNA-1:exon:1392;Parent=Msa0143970-mRNA-1
chr1_4 exon 3223173 3223379 3223173 ID=Msa0143970-mRNA-1:exon:1391;Parent=Msa0143970-mRNA-1
chr1_4 exon 3223897 3224031 3223897 ID=Msa0143970-mRNA-1:exon:1390;Parent=Msa0143970-mRNA-1
chr1_4 exon 3224354 3224485 3224354 ID=Msa0143970-mRNA-1:exon:1389;Parent=Msa0143970-mRNA-1
chr1_4 exon 3224972 3225089 3224972 ID=Msa0143970-mRNA-1:exon:1388;Parent=Msa0143970-mRNA-1
chr1_4 exon 3225916 3226145 3225916 ID=Msa0143970-mRNA-1:exon:1387;Parent=Msa0143970-mRNA-1
chr1_4 exon 3226579 3226752 3226579 ID=Msa0143970-mRNA-1:exon:1386;Parent=Msa0143970-mRNA-1
chr1_4 exon 3226877 3227008 3226877 ID=Msa0143970-mRNA-1:exon:1385;Parent=Msa0143970-mRNA-1
chr1_4 exon 3227460 3227723 3227460 ID=Msa0143970-mRNA-1:exon:1384;Parent=Msa0143970-mRNA-1
chr1_4 exon 3227854 3227934 3227854 ID=Msa0143970-mRNA-1:exon:1383;Parent=Msa0143970-mRNA-1
chr1_4 exon 3229158 3229742 3229158 ID=Msa0143970-mRNA-1:exon:1382;Parent=Msa0143970-mRNA-1
chr1_4 five_prime_UTR 3229611 3229742 3229611 ID=Msa0143970-mRNA-1:five_prime_utr;Parent=Msa0143970-mRNA-1
chr1_4 CDS 3229158 3229610 3229158 ID=Msa0143970-mRNA-1:cds;Parent=Msa0143970-mRNA-1
chr1_4 CDS 3227854 3227934 3227854 ID=Msa0143970-mRNA-1:cds;Parent=Msa0143970-mRNA-1
chr1_4 CDS 3227460 3227723 3227460 ID=Msa0143970-mRNA-1:cds;Parent=Msa0143970-mRNA-1
chr1_4 CDS 3226877 3227008 3226877 ID=Msa0143970-mRNA-1:cds;Parent=Msa0143970-mRNA-1
chr1_4 CDS 3226579 3226752 3226579 ID=Msa0143970-mRNA-1:cds;Parent=Msa0143970-mRNA-1
chr1_4 CDS 3225916 3226145 3225916 ID=Msa0143970-mRNA-1:cds;Parent=Msa0143970-mRNA-1
chr1_4 CDS 3224972 3225089 3224972 ID=Msa0143970-mRNA-1:cds;Parent=Msa0143970-mRNA-1
chr1_4 CDS 3224354 3224485 3224354 ID=Msa0143970-mRNA-1:cds;Parent=Msa0143970-mRNA-1
chr1_4 CDS 3223897 3224031 3223897 ID=Msa0143970-mRNA-1:cds;Parent=Msa0143970-mRNA-1
chr1_4 CDS 3223173 3223379 3223173 ID=Msa0143970-mRNA-1:cds;Parent=Msa0143970-mRNA-1
chr1_4 CDS 3222461 3222628 3222461 ID=Msa0143970-mRNA-1:cds;Parent=Msa0143970-mRNA-1
chr1_4 three_prime_UTR 3222268 3222460 3222268 ID=Msa0143970-mRNA-1:three_prime_utr;Parent=Msa0143970-mRNA-1
Gene Sequence

>Msa0143970

ATGAATCCCTACATTGTCACCATCATACTCCCCATCCTCGCAACTCTCCTGTTCCGCACTAACCACCCTAAACGCCGTGGAGTTCCAGTAAACTCCGCGGACGATCAAGGTGGTGTGACAGTGCGGAACAGAAGATTTGCTTCGCCGGTGGAGACGGCGTGGGAAGGAGTGAGTACATTGGCGGAATTGTTTGAAGAAGCATGCAGGAAGCATACGGAGAGATTACTGTTGGGAACAAGAGTGGTTGTTTCGAAGGAAATGGAGAAGAGTGGTGGTGATGGTGGAAAAGTTTTTGAGAAAGTTGAATTGGGTGAGTATGAATGGTTATCGTATGATGAAGCTTTTGATGGTGTTGTGAGATTTGCTAGTGGTTTGGCTGTGTTGGGACATGGAAAGGATGAGAGGGTTGGGATTTTTGCTGATACTAGGGTTGAGTGGTTCCTTGCTCTTCAGGGTTGTTTCAGGCGAAATGTGACAGTTGTAACGATGTATGCATCATTGGGAGAGGAAGCTTTATGTCACTCATTGAATGAGACAGAGGTCACGACAGTAATTTGTGGGCAGAAAGAATTGAAAACACTTGTAAATATTAGCGGACAACTTGACTCAGTGAAACGTGTGATATGCATGGATGATGATATCCCATCTGATGCCTCATCTGTTGGACACGGCTGGACAATCATATCCTTTGCAGATGTTAAGCGACTTGGTAAAGAAAAGCCTGTTGATGCTGATTTACCTCTCCCAGCTGATGTTGCAGTTATCATGTATACAAGTGGAAGTACTGGATTACCTAAGGGTGTGATGATGACACATGCTAATGTTTTAGCTACGCTCTCTGCTGTGAAGATGATTGTTCCCAAACTTGAGAAAAAGGATGTATATCTAGCATACTTGCCAATGGCTCATATCCTTGAACTAGCAGCTGAGAATTTGATGGCAGCAGTTGGGATACCTATAGGATATGGATCTCCTTTGACCCTCACAGATACATCAAGCAAGATAAAGAAAGGAACAAAGGGGGATGCTACTGTGTTGATGCCAACTTTATTGGCTGCTGTACCAGCAATTCTTGACCGTGTTCGCGATGGAGTGTTCAAGAAGGTGAATGCAACGGGAGGATTACCAAAAAAGTTGTTTTATTTAGCCTATGAGAGGAGGTTGAAAGCAGTTAATGGAAGCTGGTTTGGAGCCTGGGGCTTGGAGAAGGCTCTCTGGGATTTTCTTGTGTTTAAAAAAATCCGAGCAATTCTTGGTGGTCGCATCCGTTTCATACTGTCTGGTGGTGCTCCCCTTTCTGGTGATACTCAGCAGTTCATCAATATCTGTCTTGGTGCTCCAATAGGTCAAGGATATGGTCTTACAGAGACTTGTGCTGGTGGAACATTCTCTGATTTTGATGATACATCTGTTGGCCGTGTTGGACCTCCTCTTCCTTGCTCATTTATTAAGCTAATCGACTGGCCTGAAGGTGGATATTTAACTAATGACTCGCCAATGCCTCGTGGAGAAATTGTAATTGGTGGTCCAAATGTCACTCTTGGTTACTTCAAGAATGAAGAAAAGACAAAAGAATCATACAAGGTTGATGAAAAAGGAATGAGATGGTTCTACACTGGTGACATAGGGAGGTTTCATCAAGATGGTTGCCTAGAAATCATTGATCGTAAAAAGGACATTGTTAAACTGCAGCATGGAGAGTATGTTTCCTTGGGAAAGGTTGAGGCAGCTCTTATTGTCAGCTCCTATGTGGACAATATAATGTTGCATGCTGACCCTTTCCATAGTTACTGTGTGGCACTTGTTGTGGCTTCTCAGTCCACATTGGAAGAATGGGCTTCAAATCAAGGAATTCCTTATTCAGGTTTTTCAGAACTTTGCTCTAAAGAAGAAAGCATCAAGGAGGTGCATGCATCACTAGTAAAGGAAGCAAAGAAAGCTCGTTTGGAGAAATTTGAGATTCCAACAAAAATTAAATTGCTTTCTGATCCATGGACACCTGAGTCTGGCTTAGTCACTGCTGCTCTCAAGCTCAAGAGAGAGGCCGTCAGAAAGACTTTCCAGGAAGATCTTCTGAAGTTATACGCTTCATAG
Protein sequence

>Msa0143970

MNPYIVTIILPILATLLFRTNHPKRRGVPVNSADDQGGVTVRNRRFASPVETAWEGVSTLAELFEEACRKHTERLLLGTRVVVSKEMEKSGGDGGKVFEKVELGEYEWLSYDEAFDGVVRFASGLAVLGHGKDERVGIFADTRVEWFLALQGCFRRNVTVVTMYASLGEEALCHSLNETEVTTVICGQKELKTLVNISGQLDSVKRVICMDDDIPSDASSVGHGWTIISFADVKRLGKEKPVDADLPLPADVAVIMYTSGSTGLPKGVMMTHANVLATLSAVKMIVPKLEKKDVYLAYLPMAHILELAAENLMAAVGIPIGYGSPLTLTDTSSKIKKGTKGDATVLMPTLLAAVPAILDRVRDGVFKKVNATGGLPKKLFYLAYERRLKAVNGSWFGAWGLEKALWDFLVFKKIRAILGGRIRFILSGGAPLSGDTQQFINICLGAPIGQGYGLTETCAGGTFSDFDDTSVGRVGPPLPCSFIKLIDWPEGGYLTNDSPMPRGEIVIGGPNVTLGYFKNEEKTKESYKVDEKGMRWFYTGDIGRFHQDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSSYVDNIMLHADPFHSYCVALVVASQSTLEEWASNQGIPYSGFSELCSKEESIKEVHASLVKEAKKARLEKFEIPTKIKLLSDPWTPESGLVTAALKLKREAVRKTFQEDLLKLYAS*