AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0223390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0223390 MtrunA17_Chr2g0328571 92.398 171 7 4 1 170 18 183 4.02e-80 235
Msa0223390 MtrunA17_Chr1g0185161 90.643 171 8 6 1 170 1 164 6.55e-77 226
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0223390 AT2G29180.1 41.772 158 75 5 20 163 5 159 4.60e-24 92.8

Find 44 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTATCCGTTATCACTAT+TGG 0.245133 2_1:+72935423 Msa0223390:CDS
ATGCTCCTAGTCCTAAAATT+TGG 0.251354 2_1:-72935022 None:intergenic
GCTTATCCGTTATCACTATT+GGG 0.260636 2_1:+72935424 Msa0223390:CDS
TCTGGTTGTAGTAGTGATAA+TGG 0.300412 2_1:-72935229 None:intergenic
GAAAGGAAGGTTGCAATCTT+TGG 0.300675 2_1:-72935132 None:intergenic
GAATACAACTGAGAATTTAC+TGG 0.312917 2_1:+72936786 Msa0223390:three_prime_UTR
GCTGTAGCAGCAACAGGATT+TGG 0.334339 2_1:-72935288 None:intergenic
TTCAAAGGAAGTCCAAACTA+TGG 0.343791 2_1:+72935265 Msa0223390:CDS
CATTGATGCTTCGGAGCAAT+TGG 0.360695 2_1:+72935332 Msa0223390:CDS
TACTCAACTTGCTAAATCAT+AGG 0.367002 2_1:-72936716 None:intergenic
CTGGTTGTAGTAGTGATAAT+GGG 0.369858 2_1:-72935228 None:intergenic
AACAGGATTTGGCCATAGTT+TGG 0.372494 2_1:-72935277 None:intergenic
AAAAGAAAAGAAAAGTAGTA+AGG 0.384781 2_1:+72936576 Msa0223390:CDS
AGGGCAGGACCTAAAGGATT+TGG 0.404020 2_1:+72936596 Msa0223390:CDS
ACTGAAGATGATGATTGATT+AGG 0.408774 2_1:+72936635 Msa0223390:exon
GAGAAAGATGAAGAAGTTGT+TGG 0.423658 2_1:-72935204 None:intergenic
TGCTACAGCCATTGATGCTT+CGG 0.431580 2_1:+72935323 Msa0223390:CDS
TCAACAGCTGTAGCAGCAAC+AGG 0.437132 2_1:-72935294 None:intergenic
CAATTGCTCCGAAGCATCAA+TGG 0.447559 2_1:-72935331 None:intergenic
AGAAGATGATGTTGAAAGGA+AGG 0.478894 2_1:-72935145 None:intergenic
TCATCAACTACCACTGATGA+TGG 0.480753 2_1:+72935357 Msa0223390:CDS
AAAGAAAAGAAAAGTAGTAA+GGG 0.491413 2_1:+72936577 Msa0223390:CDS
AAGAAGAAGATGATGTTGAA+AGG 0.496918 2_1:-72935149 None:intergenic
ACTCAACTTGCTAAATCATA+GGG 0.503216 2_1:-72936715 None:intergenic
GTAGTAAGGGCAGGACCTAA+AGG 0.510055 2_1:+72936590 Msa0223390:CDS
GGAGCATCATCTCAATCCCT+TGG 0.511742 2_1:+72935038 Msa0223390:five_prime_UTR
CTTATCCGTTATCACTATTG+GGG 0.525510 2_1:+72935425 Msa0223390:CDS
CATCAACTACCACTGATGAT+GGG 0.525641 2_1:+72935358 Msa0223390:CDS
AAAAGAAAAGTAGTAAGGGC+AGG 0.536130 2_1:+72936581 Msa0223390:CDS
TACAACTTCTCAAACATCCA+AGG 0.540197 2_1:-72935055 None:intergenic
ATATACCCCAATAGTGATAA+CGG 0.550650 2_1:-72935430 None:intergenic
TTTCTTGACAAAGAGAGAGA+AGG 0.571247 2_1:+72936514 Msa0223390:CDS
CTAAATCATAGGGGAAAACA+AGG 0.571574 2_1:-72936705 None:intergenic
TGCAGTGGCCATTGCTGACG+TGG 0.589554 2_1:-72935085 None:intergenic
AGAGTGGGCCACGTCAGCAA+TGG 0.607603 2_1:+72935077 Msa0223390:exon
ATCAACTACCACTGATGATG+GGG 0.608198 2_1:+72935359 Msa0223390:CDS
ACAACTTCTCAAACATCCAA+GGG 0.612691 2_1:-72935054 None:intergenic
AAGAGACACCCCATCATCAG+TGG 0.647668 2_1:-72935367 None:intergenic
TGTTTGAGAAGTTGTAGAGT+GGG 0.649491 2_1:+72935062 Msa0223390:five_prime_UTR
ATGTTTGAGAAGTTGTAGAG+TGG 0.651403 2_1:+72935061 Msa0223390:five_prime_UTR
CTCAACTTGCTAAATCATAG+GGG 0.661129 2_1:-72936714 None:intergenic
GAGAAAGAAGAAGCAGCTAG+CGG 0.687353 2_1:+72936545 Msa0223390:CDS
ATAATGAATAACAATGTGTG+TGG 0.699753 2_1:-72936813 None:intergenic
TGATGATGCAAATAATGCAG+TGG 0.718262 2_1:-72935100 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTCTATATTAATAAAAGAAT+TGG - chr2_1:72935490-72935509 None:intergenic 15.0%
!!! CAATTCTTTTATTAATATAG+AGG + chr2_1:72935488-72935507 Msa0223390:intron 15.0%
!!! AAATGATTATGAACTAATTT+TGG - chr2_1:72935822-72935841 None:intergenic 15.0%
!! TATTCAAAATGAACTAATTA+GGG - chr2_1:72935849-72935868 None:intergenic 15.0%
!!! AATAGAATTTTACAATATTG+AGG + chr2_1:72935865-72935884 Msa0223390:intron 15.0%
!!! TTTTTCGTTTTGTAATTTTA+TGG + chr2_1:72936219-72936238 Msa0223390:intron 15.0%
!!! TTTTATAAATGTAAATGACT+TGG + chr2_1:72936362-72936381 Msa0223390:intron 15.0%
!! CTCTATATTAATAAAAGAAT+TGG - chr2_1:72935490-72935509 None:intergenic 15.0%
!!! CAATTCTTTTATTAATATAG+AGG + chr2_1:72935488-72935507 Msa0223390:intron 15.0%
!!! AAATGATTATGAACTAATTT+TGG - chr2_1:72935822-72935841 None:intergenic 15.0%
!! TATTCAAAATGAACTAATTA+GGG - chr2_1:72935849-72935868 None:intergenic 15.0%
!!! AATAGAATTTTACAATATTG+AGG + chr2_1:72935865-72935884 Msa0223390:intron 15.0%
!!! TTTTTCGTTTTGTAATTTTA+TGG + chr2_1:72936219-72936238 Msa0223390:intron 15.0%
!!! TTTTATAAATGTAAATGACT+TGG + chr2_1:72936362-72936381 Msa0223390:intron 15.0%
!!! TTGAAAAATTATGGATTTTC+TGG - chr2_1:72935250-72935269 None:intergenic 20.0%
!!! GAAAATCCATAATTTTTCAA+AGG + chr2_1:72935250-72935269 Msa0223390:CDS 20.0%
!!! TTATTGACATTACATGTTTT+AGG + chr2_1:72935681-72935700 Msa0223390:intron 20.0%
!!! TATTGACATTACATGTTTTA+GGG + chr2_1:72935682-72935701 Msa0223390:intron 20.0%
!! CTAAATTGATTATGAAAGTT+AGG - chr2_1:72935763-72935782 None:intergenic 20.0%
!! CTATTCAAAATGAACTAATT+AGG - chr2_1:72935850-72935869 None:intergenic 20.0%
!!! TTTTTGTTTATAATAGTGAC+CGG - chr2_1:72935902-72935921 None:intergenic 20.0%
!!! TTTGCGATTTTAATACATTA+AGG - chr2_1:72936184-72936203 None:intergenic 20.0%
!! AAAAGAAAAGAAAAGTAGTA+AGG + chr2_1:72936576-72936595 Msa0223390:CDS 20.0%
!! AAAGAAAAGAAAAGTAGTAA+GGG + chr2_1:72936577-72936596 Msa0223390:CDS 20.0%
!!! CTACTTTATGTTTTGATATT+AGG - chr2_1:72934995-72935014 None:intergenic 20.0%
!!! TTGAAAAATTATGGATTTTC+TGG - chr2_1:72935250-72935269 None:intergenic 20.0%
!!! GAAAATCCATAATTTTTCAA+AGG + chr2_1:72935250-72935269 Msa0223390:CDS 20.0%
!!! TTATTGACATTACATGTTTT+AGG + chr2_1:72935681-72935700 Msa0223390:intron 20.0%
!!! TATTGACATTACATGTTTTA+GGG + chr2_1:72935682-72935701 Msa0223390:intron 20.0%
!! CTAAATTGATTATGAAAGTT+AGG - chr2_1:72935763-72935782 None:intergenic 20.0%
!! CTATTCAAAATGAACTAATT+AGG - chr2_1:72935850-72935869 None:intergenic 20.0%
!!! TTTTTGTTTATAATAGTGAC+CGG - chr2_1:72935902-72935921 None:intergenic 20.0%
!!! TTTGCGATTTTAATACATTA+AGG - chr2_1:72936184-72936203 None:intergenic 20.0%
!! AAAAGAAAAGAAAAGTAGTA+AGG + chr2_1:72936576-72936595 Msa0223390:CDS 20.0%
!! AAAGAAAAGAAAAGTAGTAA+GGG + chr2_1:72936577-72936596 Msa0223390:CDS 20.0%
! TTAGTGAAAATTATTTCCCT+TGG + chr2_1:72935598-72935617 Msa0223390:intron 25.0%
! CATTCATTAAATGATGTATG+TGG - chr2_1:72935938-72935957 None:intergenic 25.0%
! TAAGCAAAAATCAACATTCT+AGG - chr2_1:72936002-72936021 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + chr2_1:72936012-72936031 Msa0223390:intron 25.0%
!! TTTTGATCTTTGAATATGTG+AGG - chr2_1:72936328-72936347 None:intergenic 25.0%
! TTACTTAGCATTAGTATTCA+GGG + chr2_1:72936436-72936455 Msa0223390:intron 25.0%
! ATAATGAATAACAATGTGTG+TGG - chr2_1:72936816-72936835 None:intergenic 25.0%
! TTAGTGAAAATTATTTCCCT+TGG + chr2_1:72935598-72935617 Msa0223390:intron 25.0%
! CATTCATTAAATGATGTATG+TGG - chr2_1:72935938-72935957 None:intergenic 25.0%
! TAAGCAAAAATCAACATTCT+AGG - chr2_1:72936002-72936021 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + chr2_1:72936012-72936031 Msa0223390:intron 25.0%
!! TTTTGATCTTTGAATATGTG+AGG - chr2_1:72936328-72936347 None:intergenic 25.0%
! TTACTTAGCATTAGTATTCA+GGG + chr2_1:72936436-72936455 Msa0223390:intron 25.0%
! ATAATGAATAACAATGTGTG+TGG - chr2_1:72936816-72936835 None:intergenic 25.0%
! GTAGCTCATAACCAAATTTT+AGG + chr2_1:72935011-72935030 Msa0223390:five_prime_UTR 30.0%
!!! CATAACCAAATTTTAGGACT+AGG + chr2_1:72935017-72935036 Msa0223390:five_prime_UTR 30.0%
AAGAAGAAGATGATGTTGAA+AGG - chr2_1:72935152-72935171 None:intergenic 30.0%
AGTAAAAACGTGTGTTGAAA+TGG - chr2_1:72935179-72935198 None:intergenic 30.0%
! GGACTTCCTTTGAAAAATTA+TGG - chr2_1:72935259-72935278 None:intergenic 30.0%
! CTTTTCTTCATTGCTTTCAT+TGG + chr2_1:72935402-72935421 Msa0223390:CDS 30.0%
ATATACCCCAATAGTGATAA+CGG - chr2_1:72935433-72935452 None:intergenic 30.0%
CTAGTTTATACTTTGTAGTG+TGG - chr2_1:72935656-72935675 None:intergenic 30.0%
! TTTAAAGCAAACAGCCATTT+AGG + chr2_1:72936125-72936144 Msa0223390:intron 30.0%
CACATATTTAGAGACCTAAA+TGG - chr2_1:72936142-72936161 None:intergenic 30.0%
TTTAGGTCTCTAAATATGTG+AGG + chr2_1:72936142-72936161 Msa0223390:intron 30.0%
! CCTCCTATCTAAAACTATTT+CGG + chr2_1:72936411-72936430 Msa0223390:intron 30.0%
!!! ACACCGAAATAGTTTTAGAT+AGG - chr2_1:72936417-72936436 None:intergenic 30.0%
GTTACTTAGCATTAGTATTC+AGG + chr2_1:72936435-72936454 Msa0223390:intron 30.0%
!! TTTTTGTTTGTTTGTGTTGC+AGG + chr2_1:72936469-72936488 Msa0223390:intron 30.0%
! ATCTTTTGACCAAATCCTTT+AGG - chr2_1:72936608-72936627 None:intergenic 30.0%
ACTGAAGATGATGATTGATT+AGG + chr2_1:72936635-72936654 Msa0223390:exon 30.0%
!! ACTCAACTTGCTAAATCATA+GGG - chr2_1:72936718-72936737 None:intergenic 30.0%
!! TACTCAACTTGCTAAATCAT+AGG - chr2_1:72936719-72936738 None:intergenic 30.0%
!! GTTTTAACAAAGAGAAGCAA+GGG + chr2_1:72936750-72936769 Msa0223390:three_prime_UTR 30.0%
GAATACAACTGAGAATTTAC+TGG + chr2_1:72936786-72936805 Msa0223390:three_prime_UTR 30.0%
! GTAGCTCATAACCAAATTTT+AGG + chr2_1:72935011-72935030 Msa0223390:five_prime_UTR 30.0%
!!! CATAACCAAATTTTAGGACT+AGG + chr2_1:72935017-72935036 Msa0223390:five_prime_UTR 30.0%
AAGAAGAAGATGATGTTGAA+AGG - chr2_1:72935152-72935171 None:intergenic 30.0%
AGTAAAAACGTGTGTTGAAA+TGG - chr2_1:72935179-72935198 None:intergenic 30.0%
! GGACTTCCTTTGAAAAATTA+TGG - chr2_1:72935259-72935278 None:intergenic 30.0%
! CTTTTCTTCATTGCTTTCAT+TGG + chr2_1:72935402-72935421 Msa0223390:CDS 30.0%
ATATACCCCAATAGTGATAA+CGG - chr2_1:72935433-72935452 None:intergenic 30.0%
CTAGTTTATACTTTGTAGTG+TGG - chr2_1:72935656-72935675 None:intergenic 30.0%
! TTTAAAGCAAACAGCCATTT+AGG + chr2_1:72936125-72936144 Msa0223390:intron 30.0%
CACATATTTAGAGACCTAAA+TGG - chr2_1:72936142-72936161 None:intergenic 30.0%
TTTAGGTCTCTAAATATGTG+AGG + chr2_1:72936142-72936161 Msa0223390:intron 30.0%
! CCTCCTATCTAAAACTATTT+CGG + chr2_1:72936411-72936430 Msa0223390:intron 30.0%
!!! ACACCGAAATAGTTTTAGAT+AGG - chr2_1:72936417-72936436 None:intergenic 30.0%
GTTACTTAGCATTAGTATTC+AGG + chr2_1:72936435-72936454 Msa0223390:intron 30.0%
!! TTTTTGTTTGTTTGTGTTGC+AGG + chr2_1:72936469-72936488 Msa0223390:intron 30.0%
! ATCTTTTGACCAAATCCTTT+AGG - chr2_1:72936608-72936627 None:intergenic 30.0%
ACTGAAGATGATGATTGATT+AGG + chr2_1:72936635-72936654 Msa0223390:exon 30.0%
!! ACTCAACTTGCTAAATCATA+GGG - chr2_1:72936718-72936737 None:intergenic 30.0%
!! TACTCAACTTGCTAAATCAT+AGG - chr2_1:72936719-72936738 None:intergenic 30.0%
!! GTTTTAACAAAGAGAAGCAA+GGG + chr2_1:72936750-72936769 Msa0223390:three_prime_UTR 30.0%
GAATACAACTGAGAATTTAC+TGG + chr2_1:72936786-72936805 Msa0223390:three_prime_UTR 30.0%
ATGCTCCTAGTCCTAAAATT+TGG - chr2_1:72935025-72935044 None:intergenic 35.0%
ACAACTTCTCAAACATCCAA+GGG - chr2_1:72935057-72935076 None:intergenic 35.0%
TACAACTTCTCAAACATCCA+AGG - chr2_1:72935058-72935077 None:intergenic 35.0%
ATGTTTGAGAAGTTGTAGAG+TGG + chr2_1:72935061-72935080 Msa0223390:five_prime_UTR 35.0%
TGTTTGAGAAGTTGTAGAGT+GGG + chr2_1:72935062-72935081 Msa0223390:five_prime_UTR 35.0%
! TGATGATGCAAATAATGCAG+TGG - chr2_1:72935103-72935122 None:intergenic 35.0%
AGAAGATGATGTTGAAAGGA+AGG - chr2_1:72935148-72935167 None:intergenic 35.0%
GAGAAAGATGAAGAAGTTGT+TGG - chr2_1:72935207-72935226 None:intergenic 35.0%
CTGGTTGTAGTAGTGATAAT+GGG - chr2_1:72935231-72935250 None:intergenic 35.0%
TCTGGTTGTAGTAGTGATAA+TGG - chr2_1:72935232-72935251 None:intergenic 35.0%
TTCAAAGGAAGTCCAAACTA+TGG + chr2_1:72935265-72935284 Msa0223390:CDS 35.0%
GCTTATCCGTTATCACTATT+GGG + chr2_1:72935424-72935443 Msa0223390:CDS 35.0%
CTTATCCGTTATCACTATTG+GGG + chr2_1:72935425-72935444 Msa0223390:CDS 35.0%
TTGAGACATGCTTGCAATTT+CGG - chr2_1:72935525-72935544 None:intergenic 35.0%
TTCCATGTCATATTGTCCAA+GGG - chr2_1:72935617-72935636 None:intergenic 35.0%
ATTCCATGTCATATTGTCCA+AGG - chr2_1:72935618-72935637 None:intergenic 35.0%
TGTTTATAATAGTGACCGGA+GGG - chr2_1:72935898-72935917 None:intergenic 35.0%
TTGTTTATAATAGTGACCGG+AGG - chr2_1:72935899-72935918 None:intergenic 35.0%
!!! CCGAAATAGTTTTAGATAGG+AGG - chr2_1:72936414-72936433 None:intergenic 35.0%
TTTCTTGACAAAGAGAGAGA+AGG + chr2_1:72936514-72936533 Msa0223390:CDS 35.0%
AAAAGAAAAGTAGTAAGGGC+AGG + chr2_1:72936581-72936600 Msa0223390:CDS 35.0%
CTAAATCATAGGGGAAAACA+AGG - chr2_1:72936708-72936727 None:intergenic 35.0%
!! CTCAACTTGCTAAATCATAG+GGG - chr2_1:72936717-72936736 None:intergenic 35.0%
!! CGTTTTAACAAAGAGAAGCA+AGG + chr2_1:72936749-72936768 Msa0223390:three_prime_UTR 35.0%
ATGCTCCTAGTCCTAAAATT+TGG - chr2_1:72935025-72935044 None:intergenic 35.0%
ACAACTTCTCAAACATCCAA+GGG - chr2_1:72935057-72935076 None:intergenic 35.0%
TACAACTTCTCAAACATCCA+AGG - chr2_1:72935058-72935077 None:intergenic 35.0%
ATGTTTGAGAAGTTGTAGAG+TGG + chr2_1:72935061-72935080 Msa0223390:five_prime_UTR 35.0%
TGTTTGAGAAGTTGTAGAGT+GGG + chr2_1:72935062-72935081 Msa0223390:five_prime_UTR 35.0%
! TGATGATGCAAATAATGCAG+TGG - chr2_1:72935103-72935122 None:intergenic 35.0%
AGAAGATGATGTTGAAAGGA+AGG - chr2_1:72935148-72935167 None:intergenic 35.0%
GAGAAAGATGAAGAAGTTGT+TGG - chr2_1:72935207-72935226 None:intergenic 35.0%
CTGGTTGTAGTAGTGATAAT+GGG - chr2_1:72935231-72935250 None:intergenic 35.0%
TCTGGTTGTAGTAGTGATAA+TGG - chr2_1:72935232-72935251 None:intergenic 35.0%
TTCAAAGGAAGTCCAAACTA+TGG + chr2_1:72935265-72935284 Msa0223390:CDS 35.0%
GCTTATCCGTTATCACTATT+GGG + chr2_1:72935424-72935443 Msa0223390:CDS 35.0%
CTTATCCGTTATCACTATTG+GGG + chr2_1:72935425-72935444 Msa0223390:CDS 35.0%
TTGAGACATGCTTGCAATTT+CGG - chr2_1:72935525-72935544 None:intergenic 35.0%
TTCCATGTCATATTGTCCAA+GGG - chr2_1:72935617-72935636 None:intergenic 35.0%
ATTCCATGTCATATTGTCCA+AGG - chr2_1:72935618-72935637 None:intergenic 35.0%
TGTTTATAATAGTGACCGGA+GGG - chr2_1:72935898-72935917 None:intergenic 35.0%
TTGTTTATAATAGTGACCGG+AGG - chr2_1:72935899-72935918 None:intergenic 35.0%
!!! CCGAAATAGTTTTAGATAGG+AGG - chr2_1:72936414-72936433 None:intergenic 35.0%
TTTCTTGACAAAGAGAGAGA+AGG + chr2_1:72936514-72936533 Msa0223390:CDS 35.0%
AAAAGAAAAGTAGTAAGGGC+AGG + chr2_1:72936581-72936600 Msa0223390:CDS 35.0%
CTAAATCATAGGGGAAAACA+AGG - chr2_1:72936708-72936727 None:intergenic 35.0%
!! CTCAACTTGCTAAATCATAG+GGG - chr2_1:72936717-72936736 None:intergenic 35.0%
!! CGTTTTAACAAAGAGAAGCA+AGG + chr2_1:72936749-72936768 Msa0223390:three_prime_UTR 35.0%
GAAAGGAAGGTTGCAATCTT+TGG - chr2_1:72935135-72935154 None:intergenic 40.0%
AACAGGATTTGGCCATAGTT+TGG - chr2_1:72935280-72935299 None:intergenic 40.0%
TCATCAACTACCACTGATGA+TGG + chr2_1:72935357-72935376 Msa0223390:CDS 40.0%
CATCAACTACCACTGATGAT+GGG + chr2_1:72935358-72935377 Msa0223390:CDS 40.0%
! ATCAACTACCACTGATGATG+GGG + chr2_1:72935359-72935378 Msa0223390:CDS 40.0%
GGCTTATCCGTTATCACTAT+TGG + chr2_1:72935423-72935442 Msa0223390:CDS 40.0%
TTCCCTTGGACAATATGACA+TGG + chr2_1:72935612-72935631 Msa0223390:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr2_1:72936015-72936034 Msa0223390:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr2_1:72936016-72936035 Msa0223390:intron 40.0%
GAATTGACATATACACCCTC+CGG - chr2_1:72936034-72936053 None:intergenic 40.0%
GGCAAATGGTCACGATTTAA+AGG + chr2_1:72936075-72936094 Msa0223390:intron 40.0%
AATCGCAAACACATCTCTAG+TGG + chr2_1:72936195-72936214 Msa0223390:intron 40.0%
CTTAGCATTAGTATTCAGGG+AGG + chr2_1:72936439-72936458 Msa0223390:intron 40.0%
GAAAGGAAGGTTGCAATCTT+TGG - chr2_1:72935135-72935154 None:intergenic 40.0%
AACAGGATTTGGCCATAGTT+TGG - chr2_1:72935280-72935299 None:intergenic 40.0%
TCATCAACTACCACTGATGA+TGG + chr2_1:72935357-72935376 Msa0223390:CDS 40.0%
CATCAACTACCACTGATGAT+GGG + chr2_1:72935358-72935377 Msa0223390:CDS 40.0%
! ATCAACTACCACTGATGATG+GGG + chr2_1:72935359-72935378 Msa0223390:CDS 40.0%
GGCTTATCCGTTATCACTAT+TGG + chr2_1:72935423-72935442 Msa0223390:CDS 40.0%
TTCCCTTGGACAATATGACA+TGG + chr2_1:72935612-72935631 Msa0223390:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr2_1:72936015-72936034 Msa0223390:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr2_1:72936016-72936035 Msa0223390:intron 40.0%
GAATTGACATATACACCCTC+CGG - chr2_1:72936034-72936053 None:intergenic 40.0%
GGCAAATGGTCACGATTTAA+AGG + chr2_1:72936075-72936094 Msa0223390:intron 40.0%
AATCGCAAACACATCTCTAG+TGG + chr2_1:72936195-72936214 Msa0223390:intron 40.0%
CTTAGCATTAGTATTCAGGG+AGG + chr2_1:72936439-72936458 Msa0223390:intron 40.0%
TGCTACAGCCATTGATGCTT+CGG + chr2_1:72935323-72935342 Msa0223390:CDS 45.0%
! CAATTGCTCCGAAGCATCAA+TGG - chr2_1:72935334-72935353 None:intergenic 45.0%
CATTGATGCTTCGGAGCAAT+TGG + chr2_1:72935332-72935351 Msa0223390:CDS 45.0%
CACATGCGGTCAACTTACTA+GGG - chr2_1:72935787-72935806 None:intergenic 45.0%
ACACATGCGGTCAACTTACT+AGG - chr2_1:72935788-72935807 None:intergenic 45.0%
! AGTAAGTTGACCGCATGTGT+TGG + chr2_1:72935788-72935807 Msa0223390:intron 45.0%
TATTGAGGATGTACACCCTC+CGG + chr2_1:72935880-72935899 Msa0223390:intron 45.0%
! GCCAAAACGAGTGACTAGTT+TGG + chr2_1:72936054-72936073 Msa0223390:intron 45.0%
! GCCAAACTAGTCACTCGTTT+TGG - chr2_1:72936058-72936077 None:intergenic 45.0%
!! CGAGTGACTAGTTTGGCAAA+TGG + chr2_1:72936061-72936080 Msa0223390:intron 45.0%
GAGAAAGAAGAAGCAGCTAG+CGG + chr2_1:72936545-72936564 Msa0223390:CDS 45.0%
TGCTACAGCCATTGATGCTT+CGG + chr2_1:72935323-72935342 Msa0223390:CDS 45.0%
! CAATTGCTCCGAAGCATCAA+TGG - chr2_1:72935334-72935353 None:intergenic 45.0%
CATTGATGCTTCGGAGCAAT+TGG + chr2_1:72935332-72935351 Msa0223390:CDS 45.0%
CACATGCGGTCAACTTACTA+GGG - chr2_1:72935787-72935806 None:intergenic 45.0%
ACACATGCGGTCAACTTACT+AGG - chr2_1:72935788-72935807 None:intergenic 45.0%
! AGTAAGTTGACCGCATGTGT+TGG + chr2_1:72935788-72935807 Msa0223390:intron 45.0%
TATTGAGGATGTACACCCTC+CGG + chr2_1:72935880-72935899 Msa0223390:intron 45.0%
! GCCAAAACGAGTGACTAGTT+TGG + chr2_1:72936054-72936073 Msa0223390:intron 45.0%
! GCCAAACTAGTCACTCGTTT+TGG - chr2_1:72936058-72936077 None:intergenic 45.0%
!! CGAGTGACTAGTTTGGCAAA+TGG + chr2_1:72936061-72936080 Msa0223390:intron 45.0%
GAGAAAGAAGAAGCAGCTAG+CGG + chr2_1:72936545-72936564 Msa0223390:CDS 45.0%
! GGAGCATCATCTCAATCCCT+TGG + chr2_1:72935038-72935057 Msa0223390:five_prime_UTR 50.0%
GCTGTAGCAGCAACAGGATT+TGG - chr2_1:72935291-72935310 None:intergenic 50.0%
TCAACAGCTGTAGCAGCAAC+AGG - chr2_1:72935297-72935316 None:intergenic 50.0%
AAGAGACACCCCATCATCAG+TGG - chr2_1:72935370-72935389 None:intergenic 50.0%
GGACGTTGATCCAACACATG+CGG - chr2_1:72935801-72935820 None:intergenic 50.0%
GTAGTAAGGGCAGGACCTAA+AGG + chr2_1:72936590-72936609 Msa0223390:CDS 50.0%
AGGGCAGGACCTAAAGGATT+TGG + chr2_1:72936596-72936615 Msa0223390:CDS 50.0%
! GGAGCATCATCTCAATCCCT+TGG + chr2_1:72935038-72935057 Msa0223390:five_prime_UTR 50.0%
GCTGTAGCAGCAACAGGATT+TGG - chr2_1:72935291-72935310 None:intergenic 50.0%
TCAACAGCTGTAGCAGCAAC+AGG - chr2_1:72935297-72935316 None:intergenic 50.0%
AAGAGACACCCCATCATCAG+TGG - chr2_1:72935370-72935389 None:intergenic 50.0%
GGACGTTGATCCAACACATG+CGG - chr2_1:72935801-72935820 None:intergenic 50.0%
GTAGTAAGGGCAGGACCTAA+AGG + chr2_1:72936590-72936609 Msa0223390:CDS 50.0%
AGGGCAGGACCTAAAGGATT+TGG + chr2_1:72936596-72936615 Msa0223390:CDS 50.0%
AGAGTGGGCCACGTCAGCAA+TGG + chr2_1:72935077-72935096 Msa0223390:exon 60.0%
TGCAGTGGCCATTGCTGACG+TGG - chr2_1:72935088-72935107 None:intergenic 60.0%
AGAGTGGGCCACGTCAGCAA+TGG + chr2_1:72935077-72935096 Msa0223390:exon 60.0%
TGCAGTGGCCATTGCTGACG+TGG - chr2_1:72935088-72935107 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 72934993 72936872 72934993 ID=Msa0223390;Name=Msa0223390
chr2_1 mRNA 72934993 72936872 72934993 ID=Msa0223390-mRNA-1;Parent=Msa0223390;Name=Msa0223390-mRNA-1;_AED=0.04;_eAED=0.04;_QI=103|1|1|1|1|1|2|220|170
chr2_1 exon 72934993 72935446 72934993 ID=Msa0223390-mRNA-1:exon:21193;Parent=Msa0223390-mRNA-1
chr2_1 exon 72936491 72936872 72936491 ID=Msa0223390-mRNA-1:exon:21194;Parent=Msa0223390-mRNA-1
chr2_1 five_prime_UTR 72934993 72935095 72934993 ID=Msa0223390-mRNA-1:five_prime_utr;Parent=Msa0223390-mRNA-1
chr2_1 CDS 72935096 72935446 72935096 ID=Msa0223390-mRNA-1:cds;Parent=Msa0223390-mRNA-1
chr2_1 CDS 72936491 72936652 72936491 ID=Msa0223390-mRNA-1:cds;Parent=Msa0223390-mRNA-1
chr2_1 three_prime_UTR 72936653 72936872 72936653 ID=Msa0223390-mRNA-1:three_prime_utr;Parent=Msa0223390-mRNA-1
Gene Sequence

>Msa0223390

ATGGCCACTGCATTATTTGCATCATCATCATCATCTCCAAAGATTGCAACCTTCCTTTCAACATCATCTTCTTCTTCTTTCCATTTCAACACACGTTTTTACTCACTTCCAACAACTTCTTCATCTTTCTCTCCCATTATCACTACTACAACCAGAAAATCCATAATTTTTCAAAGGAAGTCCAAACTATGGCCAAATCCTGTTGCTGCTACAGCTGTTGAAGATGCTGCTACAGCCATTGATGCTTCGGAGCAATTGGTTTCATCAACTACCACTGATGATGGGGTGTCTCTTATCGTATCAGCTCTTTTCTTCATTGCTTTCATTGGCTTATCCGTTATCACTATTGGGGTTATCTATTTAGCAGTAACAGATTTCTTGACAAAGAGAGAGAAGGAAAAATTTGAGAAAGAAGAAGCAGCTAGCGGAAAGAAGAAAAAGAAAAGAAAAGTAGTAAGGGCAGGACCTAAAGGATTTGGTCAAAAGATTGTTCAAACTGAAGATGATGATTGA

Protein sequence

>Msa0223390

MATALFASSSSSPKIATFLSTSSSSSFHFNTRFYSLPTTSSSFSPIITTTTRKSIIFQRKSKLWPNPVAATAVEDAATAIDASEQLVSSTTTDDGVSLIVSALFFIAFIGLSVITIGVIYLAVTDFLTKREKEKFEKEEAASGKKKKKRKVVRAGPKGFGQKIVQTEDDD*