AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1284030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1284030 MtrunA17_Chr8g0355811 89.744 156 16 0 1 156 1 156 4.30e-103 291
Msa1284030 MtrunA17_Chr8g0355801 89.103 156 17 0 1 156 1 156 1.38e-101 288
Msa1284030 MtrunA17_Chr8g0355821 85.714 154 22 0 1 154 1 154 2.06e-97 277
Msa1284030 MtrunA17_Chr8g0355791 83.974 156 25 0 1 156 1 156 9.78e-96 273
Msa1284030 MtrunA17_Chr8g0355771 82.692 156 27 0 1 156 1 156 1.38e-94 270
Msa1284030 MtrunA17_Chr8g0355741 74.522 157 39 1 1 156 1 157 1.58e-84 245
Msa1284030 MtrunA17_Chr8g0355661 69.427 157 46 2 1 156 1 156 1.12e-77 227
Msa1284030 MtrunA17_Chr8g0355721 67.516 157 49 2 1 156 1 156 8.95e-77 225
Msa1284030 MtrunA17_Chr8g0355781 68.421 152 47 1 1 151 1 152 1.12e-75 222
Msa1284030 MtrunA17_Chr8g0355761 65.132 152 52 1 1 151 1 152 9.49e-73 215
Msa1284030 MtrunA17_Chr8g0355641 62.821 156 57 1 1 155 1 156 9.79e-72 213
Msa1284030 MtrunA17_Chr1g0160371 43.137 153 83 3 1 150 1 152 2.80e-39 130
Msa1284030 MtrunA17_Chr1g0160381 38.562 153 90 3 1 150 5 156 1.82e-37 125
Msa1284030 MtrunA17_Chr1g0160391 38.462 156 87 5 1 148 1 155 7.51e-29 103
Msa1284030 MtrunA17_Chr8g0339261 33.333 150 96 4 6 153 8 155 4.19e-27 99.4
Msa1284030 MtrunA17_Chr1g0160801 39.189 148 80 6 7 151 7 147 1.69e-22 87.4
Msa1284030 MtrunA17_Chr1g0160351 40.860 93 52 2 61 150 1 93 3.39e-20 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1284030 AT1G70890.1 37.255 153 92 4 3 152 7 158 3.49e-25 94.7
Msa1284030 AT5G28010.1 34.641 153 96 4 3 152 15 166 3.68e-25 95.1
Msa1284030 AT5G28010.2 34.641 153 96 4 3 152 15 166 3.68e-25 95.1
Msa1284030 AT1G70840.1 34.641 153 96 4 3 152 20 171 5.06e-24 92.4
Msa1284030 AT1G70830.5 35.294 153 95 4 3 152 22 173 4.60e-23 89.7
Msa1284030 AT1G70830.3 35.065 154 96 4 3 153 22 174 7.15e-23 90.1
Msa1284030 AT1G70830.4 35.948 153 94 4 3 152 137 288 1.75e-22 90.9
Msa1284030 AT1G70830.4 32.990 97 63 2 59 153 31 127 1.41e-11 61.2
Msa1284030 AT1G70830.2 35.065 154 96 4 3 153 22 174 4.58e-22 89.0
Msa1284030 AT1G70830.1 35.948 153 94 4 3 152 184 335 6.37e-22 90.1
Msa1284030 AT1G70830.1 35.065 154 96 4 3 153 22 174 9.13e-22 89.7
Msa1284030 AT5G28000.1 33.333 153 98 4 3 152 13 164 1.03e-21 86.3
Msa1284030 AT1G70850.3 36.364 143 87 4 13 152 175 316 5.06e-21 87.4
Msa1284030 AT1G70850.3 34.000 150 95 4 3 149 9 157 1.63e-20 85.9
Msa1284030 AT1G70850.1 36.364 143 87 4 13 152 175 316 5.06e-21 87.4
Msa1284030 AT1G70850.1 34.000 150 95 4 3 149 9 157 1.63e-20 85.9
Msa1284030 AT1G70850.2 34.000 150 95 4 3 149 9 157 6.16e-21 85.9
Msa1284030 AT4G23670.1 33.117 154 97 5 1 151 1 151 1.66e-19 80.1
Msa1284030 AT1G70870.1 42.268 97 54 2 55 150 43 138 3.25e-19 79.0
Msa1284030 AT1G14930.1 28.662 157 108 4 1 155 1 155 2.40e-18 77.0
Msa1284030 AT2G01520.1 28.758 153 105 4 1 151 1 151 1.25e-17 75.1
Msa1284030 AT1G70880.1 31.373 153 101 4 3 152 8 159 2.24e-17 74.7
Msa1284030 AT1G24020.1 32.258 155 96 4 1 150 1 151 1.20e-16 72.8
Msa1284030 AT1G24020.2 32.258 155 96 4 1 150 1 151 1.20e-16 72.8
Msa1284030 AT1G23130.1 28.188 149 104 3 3 149 10 157 1.71e-16 72.4
Msa1284030 AT1G23120.1 29.787 141 93 4 10 149 10 145 1.96e-16 72.0
Msa1284030 AT1G23120.2 29.787 141 93 4 10 149 60 195 4.61e-16 72.0
Msa1284030 AT1G14940.1 27.389 157 110 4 1 155 1 155 1.15e-15 70.1
Msa1284030 AT2G01530.1 28.105 153 106 4 1 151 1 151 1.58e-15 69.7
Msa1284030 AT1G35260.1 30.556 144 95 4 9 149 8 149 2.40e-15 69.3
Msa1284030 AT4G14060.1 27.451 153 107 4 1 151 1 151 4.57e-15 68.6
Msa1284030 AT4G23680.1 28.758 153 103 5 1 150 1 150 7.45e-15 67.8
Msa1284030 AT1G14950.1 26.752 157 111 4 1 155 1 155 1.09e-14 67.8
Msa1284030 AT1G30990.1 29.139 151 102 5 1 149 1 148 1.81e-14 67.0
Msa1284030 AT1G35310.1 30.935 139 92 4 13 149 12 148 4.23e-14 65.9
Msa1284030 AT3G26460.1 27.451 153 108 3 1 151 1 152 3.52e-13 63.5
Msa1284030 AT1G14960.1 25.161 155 112 4 1 153 1 153 3.34e-12 60.8
Msa1284030 AT3G26450.1 24.183 153 113 3 1 151 1 152 1.44e-11 59.3

Find 52 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATACAAACGAAGGATTA+AGG 0.188999 8_3:+26015388 None:intergenic
TTCCCAGCGAGCACCATATT+TGG 0.202241 8_3:+26019043 None:intergenic
ATAATGTTCTCATTTATTTA+AGG 0.208932 8_3:-26015299 Msa1284030:three_prime_UTR
TCTAATGGGGTTGGCTTTCA+TGG 0.295756 8_3:-26015498 Msa1284030:three_prime_UTR
AATAAGGAGTTATGGTCTAA+TGG 0.313535 8_3:-26015513 Msa1284030:three_prime_UTR
CCCTTAATCCTTCGTTTGTA+TGG 0.334172 8_3:-26015389 Msa1284030:three_prime_UTR
TTATGTGTGATGCAAATAAA+TGG 0.335824 8_3:-26015354 Msa1284030:three_prime_UTR
GTCATAAAGACATTTGAATA+AGG 0.339831 8_3:-26015529 Msa1284030:three_prime_UTR
ATAAGGAGTTATGGTCTAAT+GGG 0.352015 8_3:-26015512 Msa1284030:three_prime_UTR
TTAGTAGCACGATGAAGATT+TGG 0.359597 8_3:+26015267 None:intergenic
AAAATTACTTACAAGCTGTT+TGG 0.370047 8_3:-26015757 Msa1284030:CDS
CCATACAAACGAAGGATTAA+GGG 0.380337 8_3:+26015389 None:intergenic
GACATTTGAATAAGGAGTTA+TGG 0.399837 8_3:-26015521 Msa1284030:three_prime_UTR
CACAAACTTTGTGCACTTCG+TGG 0.405990 8_3:+26018954 None:intergenic
ATGGAAGTTCTGCTGTTAGA+TGG 0.407851 8_3:-26015675 Msa1284030:CDS
AGGAAGTCCATCCAGCCATT+TGG 0.420702 8_3:+26015613 None:intergenic
TGGAGATATTGAAAACTATA+AGG 0.439418 8_3:-26015734 Msa1284030:CDS
ATCTTCACCTTCATGAAGCT+TGG 0.441586 8_3:+26018916 None:intergenic
GGGAAACTTATCACTGAACT+TGG 0.445682 8_3:-26019025 Msa1284030:CDS
CTACTAAAGCAATAAGTAGA+AGG 0.447450 8_3:-26015251 Msa1284030:three_prime_UTR
AAACACTGGACTTATGTCAT+AGG 0.470664 8_3:-26018872 Msa1284030:intron
AGGTGAAGATTGGCATCAAA+AGG 0.482747 8_3:-26018903 Msa1284030:CDS
ATTACTTACAAGCTGTTTGG+TGG 0.484942 8_3:-26015754 Msa1284030:CDS
TTTCCAAATATGGTGCTCGC+TGG 0.484997 8_3:-26019046 Msa1284030:exon
CTAGTGTGATGTTTGTATAA+TGG 0.492641 8_3:-26015440 Msa1284030:three_prime_UTR
AGCTTCATGAAGGTGAAGAT+TGG 0.494334 8_3:-26018913 Msa1284030:CDS
TTCCAAATATGGTGCTCGCT+GGG 0.503897 8_3:-26019045 Msa1284030:exon
TCATCTTGTCAAAGGGGAAA+AGG 0.504175 8_3:-26015563 Msa1284030:CDS
AAGAGCACTAGAGATATTGA+TGG 0.505384 8_3:-26015586 Msa1284030:CDS
TTGATGGTCATCTTGTCAAA+GGG 0.506740 8_3:-26015570 Msa1284030:CDS
AGATTGGCATCAAAAGGATT+CGG 0.511486 8_3:-26018897 Msa1284030:CDS
GAGTTATGGTCTAATGGGGT+TGG 0.523965 8_3:-26015507 Msa1284030:three_prime_UTR
ATTGATGGTCATCTTGTCAA+AGG 0.543582 8_3:-26015571 Msa1284030:CDS
GAACTTGGGATCAAATCACC+TGG 0.553911 8_3:-26019010 Msa1284030:CDS
TATCTCTAGTGCTCTTGCTA+AGG 0.564297 8_3:+26015593 None:intergenic
ATGTTGATACTCCAAATGGC+TGG 0.578150 8_3:-26015624 Msa1284030:CDS
GAAGTGCTTAACAAGGCTGA+TGG 0.580204 8_3:-26015694 Msa1284030:CDS
AACTTGGGATCAAATCACCT+GGG 0.581574 8_3:-26019009 Msa1284030:CDS
CATCATGCCAAGCTTCATGA+AGG 0.583004 8_3:-26018923 Msa1284030:CDS
TGATACTCCAAATGGCTGGA+TGG 0.587093 8_3:-26015620 Msa1284030:CDS
AAAAGGATTCGGTTAAACAC+TGG 0.591334 8_3:-26018886 Msa1284030:CDS
CATTTATTCCATACAAACGA+AGG 0.591362 8_3:+26015381 None:intergenic
GAGGATGTTGATACTCCAAA+TGG 0.593330 8_3:-26015628 Msa1284030:CDS
GGTACACACAAGCAATAAGA+AGG 0.608553 8_3:-26015806 Msa1284030:CDS
AGTTTGAAGAACTTCTCCCC+AGG 0.610513 8_3:+26018992 None:intergenic
GGAAACTTATCACTGAACTT+GGG 0.624297 8_3:-26019024 Msa1284030:CDS
TAAGGAGTTATGGTCTAATG+GGG 0.625990 8_3:-26015511 Msa1284030:three_prime_UTR
CATCTTAGAAGTGCTTAACA+AGG 0.644958 8_3:-26015701 Msa1284030:CDS
TGACATAACAACAGATGGTG+AGG 0.646920 8_3:-26015827 Msa1284030:intron
TGATGGTCATCTTGTCAAAG+GGG 0.652198 8_3:-26015569 Msa1284030:CDS
TGATTATGAGAAGAACAATG+AGG 0.694185 8_3:-26015647 Msa1284030:CDS
ACTTGGGATCAAATCACCTG+GGG 0.705917 8_3:-26019008 Msa1284030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTTATAATATTTAAAA+AGG - chr8_3:26015624-26015643 Msa1284030:CDS 0.0%
!! TAATTTATAATATTTAAAAA+GGG - chr8_3:26015625-26015644 Msa1284030:CDS 0.0%
!! ATTATAAATTAAGTGATTAT+AGG + chr8_3:26016506-26016525 None:intergenic 10.0%
!! ATAAAAAAAAGATATTGATA+AGG + chr8_3:26017851-26017870 None:intergenic 10.0%
!!! TTTTTATTTCTTTCCAAATA+TGG - chr8_3:26015303-26015322 Msa1284030:three_prime_UTR 15.0%
!!! AAATTGATTTTGAAAGAAAA+TGG - chr8_3:26016213-26016232 Msa1284030:intron 15.0%
!!! TTTAAAAAAACACTTTCTTT+TGG + chr8_3:26016254-26016273 None:intergenic 15.0%
!! GCTTTACTTAAAATAATAAT+AGG - chr8_3:26016559-26016578 Msa1284030:intron 15.0%
!! AAAAAACATCGTTATTAATA+TGG + chr8_3:26016711-26016730 None:intergenic 15.0%
!!! ATAGAAATTCATATTTTTCA+AGG + chr8_3:26016862-26016881 None:intergenic 15.0%
!!! TTTTTTTTTAACTTGTTTAG+TGG + chr8_3:26016885-26016904 None:intergenic 15.0%
!! TCGTTTATTTATTAAATGTA+TGG + chr8_3:26017437-26017456 None:intergenic 15.0%
!!! TTAAATAGTCTTATACATTA+GGG + chr8_3:26017884-26017903 None:intergenic 15.0%
!!! TTTAAATAGTCTTATACATT+AGG + chr8_3:26017885-26017904 None:intergenic 15.0%
!!! TGTATATGGTTTTATTTTTA+AGG + chr8_3:26017918-26017937 None:intergenic 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG + chr8_3:26018045-26018064 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr8_3:26018172-26018191 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr8_3:26018171-26018190 Msa1284030:intron 15.0%
!!! CGTATTTAATATTTTTTTAG+AGG - chr8_3:26018471-26018490 Msa1284030:intron 15.0%
!! ATAATGTTCTCATTTATTTA+AGG - chr8_3:26019060-26019079 Msa1284030:five_prime_UTR 15.0%
!! GAAAGAGAAGAAAAAAAAAA+AGG + chr8_3:26015261-26015280 None:intergenic 20.0%
!! ATAATATTTAAAAAGGGAAG+AGG - chr8_3:26015631-26015650 Msa1284030:CDS 20.0%
!! TTAAACATAACTCTTCATTA+TGG + chr8_3:26015886-26015905 None:intergenic 20.0%
!!! AACTAGTTTATTTTCTAGAT+AGG + chr8_3:26016021-26016040 None:intergenic 20.0%
!!! ATCAATTTTTTTTAAGCTCA+AGG + chr8_3:26016201-26016220 None:intergenic 20.0%
!! AGAAACGTATATAATTTACA+AGG - chr8_3:26016537-26016556 Msa1284030:intron 20.0%
!! TATTAATTTATGTATGGTCT+AGG - chr8_3:26016803-26016822 Msa1284030:intron 20.0%
!! ATTAATTTATGTATGGTCTA+GGG - chr8_3:26016804-26016823 Msa1284030:intron 20.0%
!!! TTTGCAATTTTATTTCAGAT+CGG + chr8_3:26017172-26017191 None:intergenic 20.0%
!!! CAAAAATATTTGGTTTTTTG+CGG + chr8_3:26017215-26017234 None:intergenic 20.0%
!!! TAATATTTACTTTTACGGTT+TGG + chr8_3:26017311-26017330 None:intergenic 20.0%
!!! TGACTATTCTAAAAATTAGT+CGG + chr8_3:26017509-26017528 None:intergenic 20.0%
!!! ATTGTGATTTTATAACTTCA+AGG + chr8_3:26017732-26017751 None:intergenic 20.0%
!! TGCATATAAGAATATGTATA+TGG + chr8_3:26017932-26017951 None:intergenic 20.0%
!! AAATTAGTTGTACTAGAAAT+GGG + chr8_3:26017977-26017996 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr8_3:26018085-26018104 None:intergenic 20.0%
!!! TAGTTTTAAAAGTAATACCT+TGG + chr8_3:26018148-26018167 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr8_3:26018162-26018181 Msa1284030:intron 20.0%
!!! GTACTTTTGTAAAAAGTTAA+CGG - chr8_3:26018397-26018416 Msa1284030:intron 20.0%
!!! TACTTTTGTAAAAAGTTAAC+GGG - chr8_3:26018398-26018417 Msa1284030:intron 20.0%
!!! TATTAAATACGTTTTCTCAA+AGG + chr8_3:26018462-26018481 None:intergenic 20.0%
! TACATATGTAAAACGAATTG+AGG + chr8_3:26015722-26015741 None:intergenic 25.0%
!!! TTCTTTTGGACCATTTTTTT+GGG + chr8_3:26016240-26016259 None:intergenic 25.0%
!!! TTTCTTTTGGACCATTTTTT+TGG + chr8_3:26016241-26016260 None:intergenic 25.0%
! TTAACATTCTTACTTCTTCT+TGG + chr8_3:26016634-26016653 None:intergenic 25.0%
!!! GATACTTCAATGTTTTGAAT+TGG - chr8_3:26016919-26016938 Msa1284030:intron 25.0%
!!! TGTTTTGAATTGGATATGAT+TGG - chr8_3:26016929-26016948 Msa1284030:intron 25.0%
!!! GTTTTGAATTGGATATGATT+GGG - chr8_3:26016930-26016949 Msa1284030:intron 25.0%
!!! TGTTTTGAATTGGATATGAT+TGG - chr8_3:26016929-26016948 Msa1284030:intron 25.0%
!!! GTTTTGAATTGGATATGATT+GGG - chr8_3:26016930-26016949 Msa1284030:intron 25.0%
!! TTTTGCGGTTTTCAATTTTT+TGG + chr8_3:26017200-26017219 None:intergenic 25.0%
!! CGCAAAAAACCAAATATTTT+TGG - chr8_3:26017213-26017232 Msa1284030:intron 25.0%
! CAAACACATCCAAAAATATT+TGG + chr8_3:26017225-26017244 None:intergenic 25.0%
!!! CAAATATTTTTGGATGTGTT+TGG - chr8_3:26017223-26017242 Msa1284030:intron 25.0%
! TTCGGAATAAAAATCACATA+CGG + chr8_3:26017548-26017567 None:intergenic 25.0%
! AGATAAGATGTTATTCGATT+CGG + chr8_3:26017566-26017585 None:intergenic 25.0%
! AAACTATTCAAACTCAACTA+GGG + chr8_3:26017618-26017637 None:intergenic 25.0%
! CAAATTAGTTGTACTAGAAA+TGG + chr8_3:26017978-26017997 None:intergenic 25.0%
!! ACTTTTGTAAAAAGTTAACG+GGG - chr8_3:26018399-26018418 Msa1284030:intron 25.0%
! AAAATTACTTACAAGCTGTT+TGG - chr8_3:26018602-26018621 Msa1284030:intron 25.0%
! TGGAGATATTGAAAACTATA+AGG - chr8_3:26018625-26018644 Msa1284030:intron 25.0%
! GTCATAAAGACATTTGAATA+AGG - chr8_3:26018830-26018849 Msa1284030:intron 25.0%
! TTATGTGTGATGCAAATAAA+TGG - chr8_3:26019005-26019024 Msa1284030:CDS 25.0%
AACATAACTCTTCATTATGG+TGG + chr8_3:26015883-26015902 None:intergenic 30.0%
!! TTTTTGGATGGTTTTTTGGA+TGG + chr8_3:26015964-26015983 None:intergenic 30.0%
!!! TGCTTTTTTGGATGGTTTTT+TGG + chr8_3:26015968-26015987 None:intergenic 30.0%
!!! AACTTGTGAACTTGCTTTTT+TGG + chr8_3:26015980-26015999 None:intergenic 30.0%
ATTGAAAACACTTTATCGTC+TGG + chr8_3:26016129-26016148 None:intergenic 30.0%
TTAATGTCGAAGTAAGTTCA+AGG + chr8_3:26016170-26016189 None:intergenic 30.0%
AGAAAATGGACCCAAAAAAA+TGG - chr8_3:26016227-26016246 Msa1284030:intron 30.0%
AAAACGTAAACTCGTAAACA+CGG - chr8_3:26016271-26016290 Msa1284030:intron 30.0%
!!! ACTCGTTTTTTTGGTGAAAT+CGG + chr8_3:26016350-26016369 None:intergenic 30.0%
AATAAGTAAGTAGGGTGTAT+GGG + chr8_3:26016837-26016856 None:intergenic 30.0%
TCAAGGTGAATAAGTAAGTA+GGG + chr8_3:26016845-26016864 None:intergenic 30.0%
TTCAAGGTGAATAAGTAAGT+AGG + chr8_3:26016846-26016865 None:intergenic 30.0%
!! GTTGTTTTGTAAAAACCGTT+AGG - chr8_3:26017248-26017267 Msa1284030:intron 30.0%
TTTGTAAAAACCGTTAGGAT+CGG - chr8_3:26017253-26017272 Msa1284030:intron 30.0%
!!! TTTACTTTTACGGTTTGGTT+CGG + chr8_3:26017306-26017325 None:intergenic 30.0%
GAAACTATTCAAACTCAACT+AGG + chr8_3:26017619-26017638 None:intergenic 30.0%
TGTACTAGAAATGGGTATAT+TGG + chr8_3:26017969-26017988 None:intergenic 30.0%
! CTAGTACAACTAATTTGTCT+TGG - chr8_3:26017981-26018000 Msa1284030:intron 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr8_3:26018253-26018272 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr8_3:26018254-26018273 Msa1284030:intron 30.0%
! GCAAGTAAAAAGAAAAGTGT+TGG + chr8_3:26018365-26018384 None:intergenic 30.0%
TGATTATGAGAAGAACAATG+AGG - chr8_3:26018712-26018731 Msa1284030:intron 30.0%
GACATTTGAATAAGGAGTTA+TGG - chr8_3:26018838-26018857 Msa1284030:intron 30.0%
AATAAGGAGTTATGGTCTAA+TGG - chr8_3:26018846-26018865 Msa1284030:intron 30.0%
ATAAGGAGTTATGGTCTAAT+GGG - chr8_3:26018847-26018866 Msa1284030:intron 30.0%
CTAGTGTGATGTTTGTATAA+TGG - chr8_3:26018919-26018938 Msa1284030:CDS 30.0%
CATTTATTCCATACAAACGA+AGG + chr8_3:26018981-26019000 None:intergenic 30.0%
CTACTAAAGCAATAAGTAGA+AGG - chr8_3:26019108-26019127 Msa1284030:five_prime_UTR 30.0%
GGAAACTTATCACTGAACTT+GGG - chr8_3:26015335-26015354 Msa1284030:three_prime_UTR 35.0%
AGATTGGCATCAAAAGGATT+CGG - chr8_3:26015462-26015481 Msa1284030:three_prime_UTR 35.0%
! AAAAGGATTCGGTTAAACAC+TGG - chr8_3:26015473-26015492 Msa1284030:three_prime_UTR 35.0%
AAACACTGGACTTATGTCAT+AGG - chr8_3:26015487-26015506 Msa1284030:three_prime_UTR 35.0%
CACTAGATAAGATCACGTTA+TGG - chr8_3:26015662-26015681 Msa1284030:CDS 35.0%
CGAGTTGTAAAACCTTACTT+GGG + chr8_3:26015691-26015710 None:intergenic 35.0%
! TCGAGTTGTAAAACCTTACT+TGG + chr8_3:26015692-26015711 None:intergenic 35.0%
!!! TGTGAACTTGCTTTTTTGGA+TGG + chr8_3:26015976-26015995 None:intergenic 35.0%
GGAGTAGAATTTGATGAAGT+GGG + chr8_3:26016108-26016127 None:intergenic 35.0%
TGGAGTAGAATTTGATGAAG+TGG + chr8_3:26016109-26016128 None:intergenic 35.0%
GTAAGTTCAAGGCATGTATT+TGG + chr8_3:26016159-26016178 None:intergenic 35.0%
AGTTAACACGTGTTAAACTC+GGG + chr8_3:26016306-26016325 None:intergenic 35.0%
GAGTTAACACGTGTTAAACT+CGG + chr8_3:26016307-26016326 None:intergenic 35.0%
GAGTTTAACACGTGTTAACT+CGG - chr8_3:26016306-26016325 Msa1284030:intron 35.0%
!!! CGAAGGTAAACTCGTTTTTT+TGG + chr8_3:26016359-26016378 None:intergenic 35.0%
! ACGAGTTAACACTTGATTTG+TGG - chr8_3:26016425-26016444 Msa1284030:intron 35.0%
!! TTATAGGTTCTAAACCCAGA+GGG + chr8_3:26016490-26016509 None:intergenic 35.0%
!! ATTATAGGTTCTAAACCCAG+AGG + chr8_3:26016491-26016510 None:intergenic 35.0%
ACATTCTTACTTCTTCTTGG+TGG + chr8_3:26016631-26016650 None:intergenic 35.0%
! CTCTTTGAGTTTAACTCAGT+TGG - chr8_3:26016762-26016781 Msa1284030:intron 35.0%
TTGAGTTTAACTCAGTTGGT+AGG - chr8_3:26016766-26016785 Msa1284030:intron 35.0%
! TGAGTTTAACTCAGTTGGTA+GGG - chr8_3:26016767-26016786 Msa1284030:intron 35.0%
ATAAGTAAGTAGGGTGTATG+GGG + chr8_3:26016836-26016855 None:intergenic 35.0%
GAATAAGTAAGTAGGGTGTA+TGG + chr8_3:26016838-26016857 None:intergenic 35.0%
TTGGATATGATTGGGAGTTT+AGG - chr8_3:26016938-26016957 Msa1284030:intron 35.0%
GAGTTTAGGTGTATCTTGAA+GGG - chr8_3:26016952-26016971 Msa1284030:intron 35.0%
!! GTACTCTAAAATTTCACTGC+TGG - chr8_3:26016985-26017004 Msa1284030:intron 35.0%
TTGGATATGATTGGGAGTTT+AGG - chr8_3:26016938-26016957 Msa1284030:intron 35.0%
GAGTTTAGGTGTATCTTGAA+GGG - chr8_3:26016952-26016971 Msa1284030:intron 35.0%
!! GTACTCTAAAATTTCACTGC+TGG - chr8_3:26016985-26017004 Msa1284030:intron 35.0%
! TTCAACATGGGTTGAGTTTA+GGG - chr8_3:26017131-26017150 Msa1284030:intron 35.0%
AAATCACATACGGATCAGTT+CGG + chr8_3:26017538-26017557 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr8_3:26018019-26018038 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + chr8_3:26018119-26018138 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr8_3:26018123-26018142 None:intergenic 35.0%
ATTACTTACAAGCTGTTTGG+TGG - chr8_3:26018605-26018624 Msa1284030:intron 35.0%
!! CATCTTAGAAGTGCTTAACA+AGG - chr8_3:26018658-26018677 Msa1284030:intron 35.0%
!! AAGAGCACTAGAGATATTGA+TGG - chr8_3:26018773-26018792 Msa1284030:intron 35.0%
! ATTGATGGTCATCTTGTCAA+AGG - chr8_3:26018788-26018807 Msa1284030:intron 35.0%
! TTGATGGTCATCTTGTCAAA+GGG - chr8_3:26018789-26018808 Msa1284030:intron 35.0%
TAAGGAGTTATGGTCTAATG+GGG - chr8_3:26018848-26018867 Msa1284030:intron 35.0%
CCATACAAACGAAGGATTAA+GGG + chr8_3:26018973-26018992 None:intergenic 35.0%
TCCATACAAACGAAGGATTA+AGG + chr8_3:26018974-26018993 None:intergenic 35.0%
TTAGTAGCACGATGAAGATT+TGG + chr8_3:26019095-26019114 None:intergenic 35.0%
GGGAAACTTATCACTGAACT+TGG - chr8_3:26015334-26015353 Msa1284030:three_prime_UTR 40.0%
AACTTGGGATCAAATCACCT+GGG - chr8_3:26015350-26015369 Msa1284030:three_prime_UTR 40.0%
ATCTTCACCTTCATGAAGCT+TGG + chr8_3:26015446-26015465 None:intergenic 40.0%
AGCTTCATGAAGGTGAAGAT+TGG - chr8_3:26015446-26015465 Msa1284030:three_prime_UTR 40.0%
AGGTGAAGATTGGCATCAAA+AGG - chr8_3:26015456-26015475 Msa1284030:three_prime_UTR 40.0%
CCAAAAACGTGTTAACTCGA+AGG + chr8_3:26016376-26016395 None:intergenic 40.0%
!! CCTTCGAGTTAACACGTTTT+TGG - chr8_3:26016373-26016392 Msa1284030:intron 40.0%
!! GACTCTGATGGGTTAAACTT+GGG + chr8_3:26016460-26016479 None:intergenic 40.0%
!! TGACTCTGATGGGTTAAACT+TGG + chr8_3:26016461-26016480 None:intergenic 40.0%
GGAGTTTAGGTGTATCTTGA+AGG - chr8_3:26016951-26016970 Msa1284030:intron 40.0%
!! CTGCTGGTGATGTTTTGAAT+TGG - chr8_3:26017001-26017020 Msa1284030:intron 40.0%
GGAGTTTAGGTGTATCTTGA+AGG - chr8_3:26016951-26016970 Msa1284030:intron 40.0%
CTCTTGTCTGAGTTCAACAT+GGG - chr8_3:26017119-26017138 Msa1284030:intron 40.0%
! GTTCAACATGGGTTGAGTTT+AGG - chr8_3:26017130-26017149 Msa1284030:intron 40.0%
GAAATTCGATCCGATCCTAA+CGG + chr8_3:26017266-26017285 None:intergenic 40.0%
! CAAAACCGATTCAAACCACA+TGG - chr8_3:26017586-26017605 Msa1284030:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr8_3:26018258-26018277 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr8_3:26018120-26018139 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr8_3:26018258-26018277 Msa1284030:intron 40.0%
!! AAAGTGTTGGAGCAACAAAG+TGG + chr8_3:26018352-26018371 None:intergenic 40.0%
ACCATCTGTTGTTATGTCAG+AGG + chr8_3:26018531-26018550 None:intergenic 40.0%
TGACATAACAACAGATGGTG+AGG - chr8_3:26018532-26018551 Msa1284030:intron 40.0%
GGTACACACAAGCAATAAGA+AGG - chr8_3:26018553-26018572 Msa1284030:intron 40.0%
ATGGAAGTTCTGCTGTTAGA+TGG - chr8_3:26018684-26018703 Msa1284030:intron 40.0%
GAGGATGTTGATACTCCAAA+TGG - chr8_3:26018731-26018750 Msa1284030:intron 40.0%
ATGTTGATACTCCAAATGGC+TGG - chr8_3:26018735-26018754 Msa1284030:intron 40.0%
TATCTCTAGTGCTCTTGCTA+AGG + chr8_3:26018769-26018788 None:intergenic 40.0%
TGATGGTCATCTTGTCAAAG+GGG - chr8_3:26018790-26018809 Msa1284030:intron 40.0%
TCATCTTGTCAAAGGGGAAA+AGG - chr8_3:26018796-26018815 Msa1284030:intron 40.0%
CCCTTAATCCTTCGTTTGTA+TGG - chr8_3:26018970-26018989 Msa1284030:CDS 40.0%
TTTCCAAATATGGTGCTCGC+TGG - chr8_3:26015313-26015332 Msa1284030:three_prime_UTR 45.0%
TTCCAAATATGGTGCTCGCT+GGG - chr8_3:26015314-26015333 Msa1284030:three_prime_UTR 45.0%
GAACTTGGGATCAAATCACC+TGG - chr8_3:26015349-26015368 Msa1284030:three_prime_UTR 45.0%
ACTTGGGATCAAATCACCTG+GGG - chr8_3:26015351-26015370 Msa1284030:three_prime_UTR 45.0%
AGTTTGAAGAACTTCTCCCC+AGG + chr8_3:26015370-26015389 None:intergenic 45.0%
CACAAACTTTGTGCACTTCG+TGG + chr8_3:26015408-26015427 None:intergenic 45.0%
CATCATGCCAAGCTTCATGA+AGG - chr8_3:26015436-26015455 Msa1284030:three_prime_UTR 45.0%
ACGTTATGGAGTCCCAAGTA+AGG - chr8_3:26015676-26015695 Msa1284030:CDS 45.0%
AGGGTTTGTCTGACTCTGAT+GGG + chr8_3:26016471-26016490 None:intergenic 45.0%
GCTCTTGTCTGAGTTCAACA+TGG - chr8_3:26017118-26017137 Msa1284030:intron 45.0%
ACATACGGATCAGTTCGGTT+TGG + chr8_3:26017533-26017552 None:intergenic 45.0%
GTTCGCCATGTGGTTTGAAT+CGG + chr8_3:26017594-26017613 None:intergenic 45.0%
GTGTCAAGACTCAAGATGTG+AGG + chr8_3:26017768-26017787 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr8_3:26018257-26018276 None:intergenic 45.0%
TACTCTGCACACTACTTCCA+AGG - chr8_3:26018128-26018147 Msa1284030:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr8_3:26018257-26018276 Msa1284030:intron 45.0%
GCCTCTGACATAACAACAGA+TGG - chr8_3:26018527-26018546 Msa1284030:intron 45.0%
! GAAGTGCTTAACAAGGCTGA+TGG - chr8_3:26018665-26018684 Msa1284030:intron 45.0%
TGATACTCCAAATGGCTGGA+TGG - chr8_3:26018739-26018758 Msa1284030:intron 45.0%
GAGTTATGGTCTAATGGGGT+TGG - chr8_3:26018852-26018871 Msa1284030:intron 45.0%
!! TCTAATGGGGTTGGCTTTCA+TGG - chr8_3:26018861-26018880 Msa1284030:intron 45.0%
!! ATAATTTATTAATTTATGTA+TGG - chr8_3:26016797-26016816 Msa1284030:intron 5.0%
!!! ATTATTAATATTTACTTTTA+CGG + chr8_3:26017316-26017335 None:intergenic 5.0%
!!! TTTTTTTTTGTTTTTTTAAT+GGG + chr8_3:26017654-26017673 None:intergenic 5.0%
!!! TTTTTTTTTTGTTTTTTTAA+TGG + chr8_3:26017655-26017674 None:intergenic 5.0%
TTCCCAGCGAGCACCATATT+TGG + chr8_3:26015319-26015338 None:intergenic 50.0%
GAGGGTTTGTCTGACTCTGA+TGG + chr8_3:26016472-26016491 None:intergenic 50.0%
TCAGAGTCAGACAAACCCTC+TGG - chr8_3:26016472-26016491 Msa1284030:intron 50.0%
CAGAGTCAGACAAACCCTCT+GGG - chr8_3:26016473-26016492 Msa1284030:intron 50.0%
AGGAAGTCCATCCAGCCATT+TGG + chr8_3:26018749-26018768 None:intergenic 50.0%
! CAACTAGGGTGTTCGCCATG+TGG + chr8_3:26017604-26017623 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 26015239 26019142 26015239 ID=Msa1284030;Name=Msa1284030
chr8_3 mRNA 26015239 26019142 26015239 ID=Msa1284030-mRNA-1;Parent=Msa1284030;Name=Msa1284030-mRNA-1;_AED=0.26;_eAED=0.26;_QI=83|1|1|1|1|1|2|313|156
chr8_3 exon 26015239 26015835 26015239 ID=Msa1284030-mRNA-1:exon:9084;Parent=Msa1284030-mRNA-1
chr8_3 exon 26018873 26019142 26018873 ID=Msa1284030-mRNA-1:exon:9083;Parent=Msa1284030-mRNA-1
chr8_3 five_prime_UTR 26019060 26019142 26019060 ID=Msa1284030-mRNA-1:five_prime_utr;Parent=Msa1284030-mRNA-1
chr8_3 CDS 26018873 26019059 26018873 ID=Msa1284030-mRNA-1:cds;Parent=Msa1284030-mRNA-1
chr8_3 CDS 26015552 26015835 26015552 ID=Msa1284030-mRNA-1:cds;Parent=Msa1284030-mRNA-1
chr8_3 three_prime_UTR 26015239 26015551 26015239 ID=Msa1284030-mRNA-1:three_prime_utr;Parent=Msa1284030-mRNA-1
Gene Sequence

>Msa1284030

ATGGTGCTCGCTGGGAAACTTATCACTGAACTTGGGATCAAATCACCTGGGGAGAAGTTCTTCAAACTATTTTCATCAGAACTCCACGAAGTGCACAAAGTTTGTGAAAGAGTTCATCATGCCAAGCTTCATGAAGGTGAAGATTGGCATCAAAAGGATTCGGTTAAACACTGGACTTATGTCATAGATGGTGAGGTACACACAAGCAATAAGAAGGTTGAAGAAGTTGATGAGCAAAACAAAAAAATTACTTACAAGCTGTTTGGTGGAGATATTGAAAACTATAAGGTCTTTAAGCTCATCTTAGAAGTGCTTAACAAGGCTGATGGAAGTTCTGCTGTTAGATGGACTATTGATTATGAGAAGAACAATGAGGATGTTGATACTCCAAATGGCTGGATGGACTTCCTTAGCAAGAGCACTAGAGATATTGATGGTCATCTTGTCAAAGGGGAAAAGGTAGCTCTATAA

Protein sequence

>Msa1284030

MVLAGKLITELGIKSPGEKFFKLFSSELHEVHKVCERVHHAKLHEGEDWHQKDSVKHWTYVIDGEVHTSNKKVEEVDEQNKKITYKLFGGDIENYKVFKLILEVLNKADGSSAVRWTIDYEKNNEDVDTPNGWMDFLSKSTRDIDGHLVKGEKVAL*