Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539010 | XP_013447342.1 | 98.537 | 205 | 3 | 0 | 1 | 205 | 1 | 205 | 2.49e-139 | 430 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539010 | sp|Q8RXA7|SCD1_ARATH | 74.634 | 205 | 52 | 0 | 1 | 205 | 1 | 205 | 2.97e-97 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539010 | A0A072TV61 | 98.537 | 205 | 3 | 0 | 1 | 205 | 1 | 205 | 1.19e-139 | 430 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0079680 | Msa0539010 | 0.804103 | 2.536800e-49 | -8.615850e-47 |
| Msa0183640 | Msa0539010 | 0.802977 | 4.342765e-49 | -8.615850e-47 |
| Msa0216580 | Msa0539010 | 0.839186 | 1.841769e-57 | -8.615850e-47 |
| Msa0378410 | Msa0539010 | 0.800554 | 1.365079e-48 | -8.615850e-47 |
| Msa0247970 | Msa0539010 | 0.809137 | 2.195229e-50 | -8.615850e-47 |
| Msa0328420 | Msa0539010 | 0.812896 | 3.365392e-51 | -8.615850e-47 |
| Msa0539010 | Msa0573100 | 0.856917 | 2.326104e-62 | -8.615850e-47 |
| Msa0539010 | Msa0707000 | 0.853414 | 2.427267e-61 | -8.615850e-47 |
| Msa0539010 | Msa1040110 | 0.822849 | 1.901187e-53 | -8.615850e-47 |
| Msa0539010 | Msa1083420 | 0.810090 | 1.369925e-50 | -8.615850e-47 |
| Msa0539010 | Msa1123310 | 0.802727 | 4.889589e-49 | -8.615850e-47 |
| Msa0539010 | Msa1154680 | 0.803264 | 3.787606e-49 | -8.615850e-47 |
| Msa0539010 | Msa1300950 | 0.809347 | 1.978996e-50 | -8.615850e-47 |
| Msa0539010 | Msa1381100 | 0.856340 | 3.437305e-62 | -8.615850e-47 |
| Msa0539010 | Msa1424560 | 0.803347 | 3.640418e-49 | -8.615850e-47 |
| Msa0539010 | Msa1442160 | 0.803481 | 3.415766e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539010 | MtrunA17_Chr8g0390861 | 98.537 | 205 | 3 | 0 | 1 | 205 | 1 | 205 | 2.29e-143 | 430 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539010 | AT1G49040.2 | 74.634 | 205 | 52 | 0 | 1 | 205 | 1 | 205 | 1.12e-99 | 309 |
| Msa0539010 | AT1G49040.4 | 74.634 | 205 | 52 | 0 | 1 | 205 | 1 | 205 | 1.12e-99 | 309 |
| Msa0539010 | AT1G49040.3 | 74.634 | 205 | 52 | 0 | 1 | 205 | 1 | 205 | 2.69e-99 | 310 |
| Msa0539010 | AT1G49040.1 | 74.634 | 205 | 52 | 0 | 1 | 205 | 1 | 205 | 3.01e-98 | 310 |
Find 91 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGTTAGCTGCATTTCTTTC+CGG | 0.177326 | 4_1:-19097039 | Msa0539010:CDS |
| CTTCTCCTCTTTCCCCTATA+TGG | 0.181584 | 4_1:+19098582 | None:intergenic |
| CAGCTAATAAAATCCGAAAA+AGG | 0.228866 | 4_1:+19096353 | None:intergenic |
| TTCTTTCCCGGTTCCATATA+GGG | 0.265715 | 4_1:-19098595 | Msa0539010:five_prime_UTR |
| GGTGTTGAGTTCCATGCTTC+AGG | 0.272181 | 4_1:-19098252 | Msa0539010:CDS |
| CGTTAGCTGCATTTCTTTCC+GGG | 0.293170 | 4_1:-19097038 | Msa0539010:CDS |
| CTTCTTTCCCGGTTCCATAT+AGG | 0.315440 | 4_1:-19098596 | Msa0539010:five_prime_UTR |
| AACAGAACTCGCTCCTTTCC+AGG | 0.317466 | 4_1:+19096457 | None:intergenic |
| TTCAAGATCTGCTTCGCTTT+CGG | 0.321304 | 4_1:+19098626 | None:intergenic |
| TGAAGCACCCTCTTCTTTCC+CGG | 0.330291 | 4_1:-19098607 | Msa0539010:five_prime_UTR |
| TTGTTAATTTGAGGGAGTTT+TGG | 0.333480 | 4_1:+19098708 | None:intergenic |
| ACAATTTCAGCAAGCCACTA+TGG | 0.336505 | 4_1:-19096522 | Msa0539010:intron |
| GTAGCCTTTGTTTCCATCAA+TGG | 0.340755 | 4_1:+19098461 | None:intergenic |
| CTCTTTCCCCTATATGGAAC+CGG | 0.345860 | 4_1:+19098588 | None:intergenic |
| TACTTCGTTGTATGCGGAAT+CGG | 0.376277 | 4_1:-19098498 | Msa0539010:CDS |
| CGATGAGGGATTGAATTGAA+TGG | 0.385624 | 4_1:+19098769 | None:intergenic |
| GGAAGCTGAGGAGGTGGAGG+AGG | 0.386527 | 4_1:+19098369 | None:intergenic |
| GGATAGAGAGAGTGAGTAGA+AGG | 0.391615 | 4_1:+19098390 | None:intergenic |
| GTTCTATGTTTCTCCCCAAC+TGG | 0.401299 | 4_1:-19096887 | Msa0539010:CDS |
| TTGATTGTAGTGTGTTCTTC+CGG | 0.410835 | 4_1:-19098277 | Msa0539010:intron |
| CCATCAATGGATCGAATCTC+AGG | 0.413858 | 4_1:+19098474 | None:intergenic |
| ACACTTACCTACTTCCAGTT+GGG | 0.421558 | 4_1:+19096873 | None:intergenic |
| GGAAATTGATCGAGAAGAAA+AGG | 0.439027 | 4_1:+19098414 | None:intergenic |
| CCTGAGATTCGATCCATTGA+TGG | 0.439225 | 4_1:-19098474 | Msa0539010:CDS |
| TATAGAGGCCTACAGGATAC+AGG | 0.442870 | 4_1:-19096996 | Msa0539010:CDS |
| AGTTGAATTTGTTAATTTGA+GGG | 0.451636 | 4_1:+19098700 | None:intergenic |
| AAGTTGAATTTGTTAATTTG+AGG | 0.455526 | 4_1:+19098699 | None:intergenic |
| AGCATACCGGTCAAAACAAT+AGG | 0.455811 | 4_1:+19098189 | None:intergenic |
| GACTTCCCCATGTTGATGTA+TGG | 0.469316 | 4_1:-19096387 | Msa0539010:CDS |
| TAGAGAGAGTGAGTAGAAGG+TGG | 0.471027 | 4_1:+19098393 | None:intergenic |
| GGGGAAGTCCACAGTTTGGT+GGG | 0.476300 | 4_1:+19096401 | None:intergenic |
| AATGTACCTTTGCCTACTCC+TGG | 0.479501 | 4_1:-19096475 | Msa0539010:CDS |
| AAGAAATTGTTACAAAAGAA+AGG | 0.483939 | 4_1:+19098827 | None:intergenic |
| ACATGGGGAAGTCCACAGTT+TGG | 0.485287 | 4_1:+19096397 | None:intergenic |
| GAATTGTCTGCTTTCTGTAG+AGG | 0.485414 | 4_1:-19096425 | Msa0539010:CDS |
| AGGACGGTTGTTAATTAATG+AGG | 0.499762 | 4_1:+19096320 | None:intergenic |
| TACACTTACCTACTTCCAGT+TGG | 0.502099 | 4_1:+19096872 | None:intergenic |
| GTTGGAAGCTGAGGAGGTGG+AGG | 0.510342 | 4_1:+19098366 | None:intergenic |
| TGTTTGTGAAGATGTTATAG+AGG | 0.513303 | 4_1:-19097011 | Msa0539010:CDS |
| TTGTAGTGTGTTCTTCCGGC+TGG | 0.518134 | 4_1:-19098273 | Msa0539010:intron |
| TCTTTCCCGGTTCCATATAG+GGG | 0.518400 | 4_1:-19098594 | Msa0539010:five_prime_UTR |
| CAATTTCAGCAAGCCACTAT+GGG | 0.519637 | 4_1:-19096521 | Msa0539010:intron |
| ACAGTTGGAAGCTGAGGAGG+TGG | 0.522549 | 4_1:+19098363 | None:intergenic |
| CGCCGTGTTTCAGTGTGCTA+AGG | 0.522656 | 4_1:-19096931 | Msa0539010:CDS |
| GGAAACGTGGAAGGATCGTT+CGG | 0.526572 | 4_1:+19098222 | None:intergenic |
| AACAAAGGCTACCATGGCCC+TGG | 0.531218 | 4_1:-19098450 | Msa0539010:CDS |
| AAGATGTTATAGAGGCCTAC+AGG | 0.534441 | 4_1:-19097003 | Msa0539010:CDS |
| CGATCCATTGATGGAAACAA+AGG | 0.538031 | 4_1:-19098465 | Msa0539010:CDS |
| AGGATAACTCCGCGGAAACG+TGG | 0.541226 | 4_1:+19098209 | None:intergenic |
| TGGGGAAGTCCACAGTTTGG+TGG | 0.541714 | 4_1:+19096400 | None:intergenic |
| TAACTCCGCGGAAACGTGGA+AGG | 0.546490 | 4_1:+19098213 | None:intergenic |
| AGGAGTAGGCAAAGGTACAT+TGG | 0.549021 | 4_1:+19096477 | None:intergenic |
| CGGTTCCATATAGGGGAAAG+AGG | 0.551568 | 4_1:-19098587 | Msa0539010:five_prime_UTR |
| AAGTTTGATACAGAGGGTGA+TGG | 0.553420 | 4_1:-19097073 | Msa0539010:intron |
| CATTCAATTCAATCCCTCAT+CGG | 0.555136 | 4_1:-19098768 | Msa0539010:five_prime_UTR |
| AAGGCTACCATGGCCCTGGT+TGG | 0.557571 | 4_1:-19098446 | Msa0539010:CDS |
| GAGGGATTGAATTGAATGGA+AGG | 0.564002 | 4_1:+19098773 | None:intergenic |
| CACTTACCTACTTCCAGTTG+GGG | 0.564927 | 4_1:+19096874 | None:intergenic |
| GTTTCTCCCCAACTGGAAGT+AGG | 0.566442 | 4_1:-19096880 | Msa0539010:intron |
| ATGTTTACAGTTGGAAGCTG+AGG | 0.567473 | 4_1:+19098357 | None:intergenic |
| GCATGGAACTCAACACCAGC+CGG | 0.568215 | 4_1:+19098258 | None:intergenic |
| ATGGGATATTATAGCACATA+CGG | 0.570044 | 4_1:-19096503 | Msa0539010:CDS |
| TTTACAGTTGGAAGCTGAGG+AGG | 0.574396 | 4_1:+19098360 | None:intergenic |
| GATACATCCAACCAGGGCCA+TGG | 0.577194 | 4_1:+19098439 | None:intergenic |
| TTTGAATACTTCGTTGTATG+CGG | 0.582756 | 4_1:-19098504 | Msa0539010:CDS |
| CATCTTCACAAACATGATCC+CGG | 0.583760 | 4_1:+19097020 | None:intergenic |
| CTCCTTAGCACACTGAAACA+CGG | 0.586996 | 4_1:+19096929 | None:intergenic |
| GGGAAGTCCACAGTTTGGTG+GGG | 0.588065 | 4_1:+19096402 | None:intergenic |
| ACCTTTGCCTACTCCTGGAA+AGG | 0.589840 | 4_1:-19096470 | Msa0539010:CDS |
| TCGGATCAAATCCTGAAGCA+TGG | 0.594826 | 4_1:+19098241 | None:intergenic |
| TCCTTTCCAGGAGTAGGCAA+AGG | 0.596453 | 4_1:+19096469 | None:intergenic |
| ATAGAACAAACAGTTCCTCA+AGG | 0.598599 | 4_1:+19096903 | None:intergenic |
| GATGGAAACAAAGGCTACCA+TGG | 0.600245 | 4_1:-19098456 | Msa0539010:CDS |
| TCTTTCCCCTATATGGAACC+GGG | 0.607984 | 4_1:+19098589 | None:intergenic |
| ACGATCCTTCCACGTTTCCG+CGG | 0.610593 | 4_1:-19098218 | Msa0539010:CDS |
| ACAGATGCATTTATCAGCAT+AGG | 0.614818 | 4_1:+19096967 | None:intergenic |
| TATGGAACCGGGAAAGAAGA+GGG | 0.614832 | 4_1:+19098600 | None:intergenic |
| ACTCGCTCCTTTCCAGGAGT+AGG | 0.616308 | 4_1:+19096463 | None:intergenic |
| TGTGCTATAATATCCCATAG+TGG | 0.616947 | 4_1:+19096508 | None:intergenic |
| GGAATTTCCCTGTATCCTGT+AGG | 0.618933 | 4_1:+19096988 | None:intergenic |
| AAAGGAAGATACATCCAACC+AGG | 0.623596 | 4_1:+19098432 | None:intergenic |
| AGGAGACCATACATCAACAT+GGG | 0.627641 | 4_1:+19096381 | None:intergenic |
| ATATGGAACCGGGAAAGAAG+AGG | 0.629515 | 4_1:+19098599 | None:intergenic |
| TAGAACAAACAGTTCCTCAA+GGG | 0.632516 | 4_1:+19096904 | None:intergenic |
| GTAGAGGCCCCACCAAACTG+TGG | 0.643742 | 4_1:-19096409 | Msa0539010:CDS |
| TAGGAGACCATACATCAACA+TGG | 0.644182 | 4_1:+19096380 | None:intergenic |
| ATAGAGGCCTACAGGATACA+GGG | 0.656830 | 4_1:-19096995 | Msa0539010:CDS |
| TGTGCTAAGGAGTACCCTTG+AGG | 0.664848 | 4_1:-19096918 | Msa0539010:CDS |
| AAGGAAGATACATCCAACCA+GGG | 0.698693 | 4_1:+19098433 | None:intergenic |
| GGAGACCATACATCAACATG+GGG | 0.715399 | 4_1:+19096382 | None:intergenic |
| AAAACAATAGGATAACTCCG+CGG | 0.808041 | 4_1:+19098201 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATGGTTTAAATAACTT+TGG | - | chr4_1:19097084-19097103 | Msa0539010:intron | 15.0% |
| !! | AAGAAATTGTTACAAAAGAA+AGG | + | chr4_1:19096334-19096353 | None:intergenic | 20.0% |
| !!! | AGTTGAATTTGTTAATTTGA+GGG | + | chr4_1:19096461-19096480 | None:intergenic | 20.0% |
| !!! | AAGTTGAATTTGTTAATTTG+AGG | + | chr4_1:19096462-19096481 | None:intergenic | 20.0% |
| !! | AAACATAAATATCTTGAGAA+AGG | - | chr4_1:19097874-19097893 | Msa0539010:intron | 20.0% |
| !! | AACATAAATATCTTGAGAAA+GGG | - | chr4_1:19097875-19097894 | Msa0539010:intron | 20.0% |
| !! | AAAATATTATGCAGATTTGA+AGG | + | chr4_1:19097911-19097930 | None:intergenic | 20.0% |
| !!! | GTATTTCAATAAGTTTGTTT+TGG | - | chr4_1:19097996-19098015 | Msa0539010:intron | 20.0% |
| !! | GCTATATGTTTATTTCAAAA+GGG | + | chr4_1:19098504-19098523 | None:intergenic | 20.0% |
| !! | AGCTATATGTTTATTTCAAA+AGG | + | chr4_1:19098505-19098524 | None:intergenic | 20.0% |
| !!! | TTGGTTGTTAAGCATTTTTT+AGG | + | chr4_1:19096434-19096453 | None:intergenic | 25.0% |
| !!! | CTTAAATTGCTACTTGATTT+TGG | - | chr4_1:19097016-19097035 | Msa0539010:CDS | 25.0% |
| ! | CTATAAGCACTTAATTAAGT+TGG | + | chr4_1:19097131-19097150 | None:intergenic | 25.0% |
| ! | CTACTTAGCTTATAAGATAT+TGG | + | chr4_1:19097208-19097227 | None:intergenic | 25.0% |
| !!! | CTTATTTCTATAAAAACTCC+AGG | + | chr4_1:19097248-19097267 | None:intergenic | 25.0% |
| !! | CACTTTAGGTTAAAATAATC+AGG | - | chr4_1:19097480-19097499 | Msa0539010:intron | 25.0% |
| ! | AGTAAAGTACAACTTATGAA+AGG | - | chr4_1:19097596-19097615 | Msa0539010:intron | 25.0% |
| !! | TCTTCCAATTTTTGCATATT+AGG | - | chr4_1:19097688-19097707 | Msa0539010:intron | 25.0% |
| ! | GTTTCCTAATATGCAAAAAT+TGG | + | chr4_1:19097695-19097714 | None:intergenic | 25.0% |
| !! | TATGCTCAAGATTTCTTTTA+AGG | + | chr4_1:19097719-19097738 | None:intergenic | 25.0% |
| ! | CAAGATATTTATGTTTCGTA+AGG | + | chr4_1:19097870-19097889 | None:intergenic | 25.0% |
| ! | CTTATTGAAATACCAAATCA+TGG | + | chr4_1:19097989-19098008 | None:intergenic | 25.0% |
| !!! | ATAAGTTTGTTTTGGTTGAT+TGG | - | chr4_1:19098004-19098023 | Msa0539010:intron | 25.0% |
| ! | ACTTAAAAGTTTGATACAGA+GGG | - | chr4_1:19098079-19098098 | Msa0539010:intron | 25.0% |
| ! | GTTGTGTATAACATAAACAA+AGG | + | chr4_1:19098379-19098398 | None:intergenic | 25.0% |
| ! | ACTGTATAGAACATACAAAA+AGG | + | chr4_1:19098413-19098432 | None:intergenic | 25.0% |
| !!! | TGTGTTGATATTTTAATGAG+TGG | + | chr4_1:19098460-19098479 | None:intergenic | 25.0% |
| ! | AGCTAATAAAATCCGAAAAA+GGG | + | chr4_1:19098807-19098826 | None:intergenic | 25.0% |
| !! | TTGTTAATTTGAGGGAGTTT+TGG | + | chr4_1:19096453-19096472 | None:intergenic | 30.0% |
| ! | TCAAAGATTCGAGACATTTT+TGG | + | chr4_1:19096639-19096658 | None:intergenic | 30.0% |
| TTTGAATACTTCGTTGTATG+CGG | - | chr4_1:19096654-19096673 | Msa0539010:intron | 30.0% | |
| !!! | AGTTATCCTATTGTTTTGAC+CGG | - | chr4_1:19096963-19096982 | Msa0539010:CDS | 30.0% |
| AGCTTTCTGCATAGATTAAA+TGG | - | chr4_1:19097069-19097088 | Msa0539010:intron | 30.0% | |
| !! | GTTGTTTTCATAAGTTATCC+TGG | - | chr4_1:19097227-19097246 | Msa0539010:intron | 30.0% |
| TTAGTTGACATGTTCACTTT+AGG | - | chr4_1:19097466-19097485 | Msa0539010:intron | 30.0% | |
| ATCAATAACAACACACTTCA+TGG | + | chr4_1:19097553-19097572 | None:intergenic | 30.0% | |
| ! | ATGAAGTGTGTTGTTATTGA+TGG | - | chr4_1:19097552-19097571 | Msa0539010:intron | 30.0% |
| ! | TGAAGTGTGTTGTTATTGAT+GGG | - | chr4_1:19097553-19097572 | Msa0539010:intron | 30.0% |
| ! | GTACTTTACTAATTTTCCTC+TGG | + | chr4_1:19097586-19097605 | None:intergenic | 30.0% |
| CAAATCATGGCTTAAAATGA+GGG | + | chr4_1:19097976-19097995 | None:intergenic | 30.0% | |
| GACTTAAAAGTTTGATACAG+AGG | - | chr4_1:19098078-19098097 | Msa0539010:intron | 30.0% | |
| TGTTTGTGAAGATGTTATAG+AGG | - | chr4_1:19098147-19098166 | Msa0539010:intron | 30.0% | |
| !!! | TGGTTAAGTTTTTTCCATCA+TGG | + | chr4_1:19098318-19098337 | None:intergenic | 30.0% |
| AAAACTTAACCAGCTTCTTA+TGG | - | chr4_1:19098326-19098345 | Msa0539010:intron | 30.0% | |
| TAGAACATACAAAAAGGCTT+TGG | + | chr4_1:19098407-19098426 | None:intergenic | 30.0% | |
| ! | GGATTTTCACGATTTAACTA+AGG | + | chr4_1:19098573-19098592 | None:intergenic | 30.0% |
| GCAATGGAAACACAAAATAA+TGG | + | chr4_1:19098594-19098613 | None:intergenic | 30.0% | |
| GCTGAAATTGTTATAGAGTT+GGG | + | chr4_1:19098627-19098646 | None:intergenic | 30.0% | |
| TGCTGAAATTGTTATAGAGT+TGG | + | chr4_1:19098628-19098647 | None:intergenic | 30.0% | |
| ATGGGATATTATAGCACATA+CGG | - | chr4_1:19098655-19098674 | Msa0539010:five_prime_UTR | 30.0% | |
| CAGCTAATAAAATCCGAAAA+AGG | + | chr4_1:19098808-19098827 | None:intergenic | 30.0% | |
| CATTCAATTCAATCCCTCAT+CGG | - | chr4_1:19096390-19096409 | Msa0539010:CDS | 35.0% | |
| !! | AAGCTTTTTCTTTCCGATGA+GGG | + | chr4_1:19096406-19096425 | None:intergenic | 35.0% |
| GGAAATTGATCGAGAAGAAA+AGG | + | chr4_1:19096747-19096766 | None:intergenic | 35.0% | |
| AGGAAGAAGATGTTTACAGT+TGG | + | chr4_1:19096813-19096832 | None:intergenic | 35.0% | |
| ! | ACTCGAAAAAGTGAAAGCAT+AGG | + | chr4_1:19096833-19096852 | None:intergenic | 35.0% |
| TTGATTGTAGTGTGTTCTTC+CGG | - | chr4_1:19096881-19096900 | Msa0539010:CDS | 35.0% | |
| AAAACAATAGGATAACTCCG+CGG | + | chr4_1:19096960-19096979 | None:intergenic | 35.0% | |
| !! | CTACTTGATTTTGGTGTATG+TGG | - | chr4_1:19097025-19097044 | Msa0539010:CDS | 35.0% |
| TAAATAACTTTGGCCCTATC+TGG | - | chr4_1:19097094-19097113 | Msa0539010:intron | 35.0% | |
| GGTTATCCATAATCCAGATA+GGG | + | chr4_1:19097110-19097129 | None:intergenic | 35.0% | |
| TGGTTATCCATAATCCAGAT+AGG | + | chr4_1:19097111-19097130 | None:intergenic | 35.0% | |
| CACACTTCTCAGTATAAGAA+TGG | + | chr4_1:19097443-19097462 | None:intergenic | 35.0% | |
| CATTCTTATACTGAGAAGTG+TGG | - | chr4_1:19097441-19097460 | Msa0539010:intron | 35.0% | |
| ! | ATTGATGGGAATTTTACCAG+AGG | - | chr4_1:19097567-19097586 | Msa0539010:intron | 35.0% |
| GCAATAGAAGCTGTAGAAAT+AGG | - | chr4_1:19097739-19097758 | Msa0539010:intron | 35.0% | |
| AGAAACTGTTCCAAAGTGAA+TGG | - | chr4_1:19097837-19097856 | Msa0539010:intron | 35.0% | |
| AGGTATGAATCCATTCACTT+TGG | + | chr4_1:19097850-19097869 | None:intergenic | 35.0% | |
| ATCTTGAGAAAGGGTAATGT+TGG | - | chr4_1:19097884-19097903 | Msa0539010:intron | 35.0% | |
| CCAAATCATGGCTTAAAATG+AGG | + | chr4_1:19097977-19097996 | None:intergenic | 35.0% | |
| ! | CCTCATTTTAAGCCATGATT+TGG | - | chr4_1:19097974-19097993 | Msa0539010:intron | 35.0% |
| ACAGATGCATTTATCAGCAT+AGG | + | chr4_1:19098194-19098213 | None:intergenic | 35.0% | |
| TAGAACAAACAGTTCCTCAA+GGG | + | chr4_1:19098257-19098276 | None:intergenic | 35.0% | |
| ATAGAACAAACAGTTCCTCA+AGG | + | chr4_1:19098258-19098277 | None:intergenic | 35.0% | |
| TAAGTGTAAGTGTTCCATGA+TGG | - | chr4_1:19098301-19098320 | Msa0539010:intron | 35.0% | |
| GTTGGGAACATTAAAAGCAA+TGG | + | chr4_1:19098610-19098629 | None:intergenic | 35.0% | |
| TGTGCTATAATATCCCATAG+TGG | + | chr4_1:19098653-19098672 | None:intergenic | 35.0% | |
| AAAATCCGAAAAAGGGTTCT+AGG | + | chr4_1:19098800-19098819 | None:intergenic | 35.0% | |
| GAGGGATTGAATTGAATGGA+AGG | + | chr4_1:19096388-19096407 | None:intergenic | 40.0% | |
| CGATGAGGGATTGAATTGAA+TGG | + | chr4_1:19096392-19096411 | None:intergenic | 40.0% | |
| !! | GAAGCTTTTTCTTTCCGATG+AGG | + | chr4_1:19096407-19096426 | None:intergenic | 40.0% |
| TTCAAGATCTGCTTCGCTTT+CGG | + | chr4_1:19096535-19096554 | None:intergenic | 40.0% | |
| TTCTTTCCCGGTTCCATATA+GGG | - | chr4_1:19096563-19096582 | Msa0539010:intron | 40.0% | |
| TACTTCGTTGTATGCGGAAT+CGG | - | chr4_1:19096660-19096679 | Msa0539010:intron | 40.0% | |
| CGATCCATTGATGGAAACAA+AGG | - | chr4_1:19096693-19096712 | Msa0539010:intron | 40.0% | |
| ! | GTAGCCTTTGTTTCCATCAA+TGG | + | chr4_1:19096700-19096719 | None:intergenic | 40.0% |
| AAGGAAGATACATCCAACCA+GGG | + | chr4_1:19096728-19096747 | None:intergenic | 40.0% | |
| AAAGGAAGATACATCCAACC+AGG | + | chr4_1:19096729-19096748 | None:intergenic | 40.0% | |
| ATGTTTACAGTTGGAAGCTG+AGG | + | chr4_1:19096804-19096823 | None:intergenic | 40.0% | |
| AGCATACCGGTCAAAACAAT+AGG | + | chr4_1:19096972-19096991 | None:intergenic | 40.0% | |
| ! | ATGCAAGTACAGAAGCATAC+CGG | + | chr4_1:19096985-19097004 | None:intergenic | 40.0% |
| ! | GTCTGCTTGAATTGGCTTAT+TGG | + | chr4_1:19097338-19097357 | None:intergenic | 40.0% |
| AACTAGGTGTCTGCTTGAAT+TGG | + | chr4_1:19097346-19097365 | None:intergenic | 40.0% | |
| TTCCAGTAGTGATAGTCTCT+TGG | - | chr4_1:19097629-19097648 | Msa0539010:intron | 40.0% | |
| !! | TCTTGGTGTTACTGCTTCTT+TGG | - | chr4_1:19097646-19097665 | Msa0539010:intron | 40.0% |
| !! | CTTGGTGTTACTGCTTCTTT+GGG | - | chr4_1:19097647-19097666 | Msa0539010:intron | 40.0% |
| GCATGAACAAAGCTTATCCT+GGG | - | chr4_1:19097761-19097780 | Msa0539010:intron | 40.0% | |
| CATGAACAAAGCTTATCCTG+GGG | - | chr4_1:19097762-19097781 | Msa0539010:intron | 40.0% | |
| ATCCGTTATATCTTCTAGCG+TGG | - | chr4_1:19098033-19098052 | Msa0539010:intron | 40.0% | |
| TCCGTTATATCTTCTAGCGT+GGG | - | chr4_1:19098034-19098053 | Msa0539010:intron | 40.0% | |
| ACCCACGCTAGAAGATATAA+CGG | + | chr4_1:19098038-19098057 | None:intergenic | 40.0% | |
| AAGTTTGATACAGAGGGTGA+TGG | - | chr4_1:19098085-19098104 | Msa0539010:intron | 40.0% | |
| ACGTTAGCTGCATTTCTTTC+CGG | - | chr4_1:19098119-19098138 | Msa0539010:intron | 40.0% | |
| CATCTTCACAAACATGATCC+CGG | + | chr4_1:19098141-19098160 | None:intergenic | 40.0% | |
| AAGATGTTATAGAGGCCTAC+AGG | - | chr4_1:19098155-19098174 | Msa0539010:intron | 40.0% | |
| ACACTTACCTACTTCCAGTT+GGG | + | chr4_1:19098288-19098307 | None:intergenic | 40.0% | |
| TACACTTACCTACTTCCAGT+TGG | + | chr4_1:19098289-19098308 | None:intergenic | 40.0% | |
| GTCACAATCTCAATAGCTGT+TGG | + | chr4_1:19098354-19098373 | None:intergenic | 40.0% | |
| ACAATTTCAGCAAGCCACTA+TGG | - | chr4_1:19098636-19098655 | Msa0539010:five_prime_UTR | 40.0% | |
| CAATTTCAGCAAGCCACTAT+GGG | - | chr4_1:19098637-19098656 | Msa0539010:five_prime_UTR | 40.0% | |
| GAATTGTCTGCTTTCTGTAG+AGG | - | chr4_1:19098733-19098752 | Msa0539010:five_prime_UTR | 40.0% | |
| AGGAGACCATACATCAACAT+GGG | + | chr4_1:19098780-19098799 | None:intergenic | 40.0% | |
| TAGGAGACCATACATCAACA+TGG | + | chr4_1:19098781-19098800 | None:intergenic | 40.0% | |
| TATGGAACCGGGAAAGAAGA+GGG | + | chr4_1:19096561-19096580 | None:intergenic | 45.0% | |
| ATATGGAACCGGGAAAGAAG+AGG | + | chr4_1:19096562-19096581 | None:intergenic | 45.0% | |
| CTTCTTTCCCGGTTCCATAT+AGG | - | chr4_1:19096562-19096581 | Msa0539010:intron | 45.0% | |
| TCTTTCCCGGTTCCATATAG+GGG | - | chr4_1:19096564-19096583 | Msa0539010:intron | 45.0% | |
| TCTTTCCCCTATATGGAACC+GGG | + | chr4_1:19096572-19096591 | None:intergenic | 45.0% | |
| CTCTTTCCCCTATATGGAAC+CGG | + | chr4_1:19096573-19096592 | None:intergenic | 45.0% | |
| CTTCTCCTCTTTCCCCTATA+TGG | + | chr4_1:19096579-19096598 | None:intergenic | 45.0% | |
| CCATCAATGGATCGAATCTC+AGG | + | chr4_1:19096687-19096706 | None:intergenic | 45.0% | |
| CCTGAGATTCGATCCATTGA+TGG | - | chr4_1:19096684-19096703 | Msa0539010:intron | 45.0% | |
| GATGGAAACAAAGGCTACCA+TGG | - | chr4_1:19096702-19096721 | Msa0539010:intron | 45.0% | |
| TAGAGAGAGTGAGTAGAAGG+TGG | + | chr4_1:19096768-19096787 | None:intergenic | 45.0% | |
| GGATAGAGAGAGTGAGTAGA+AGG | + | chr4_1:19096771-19096790 | None:intergenic | 45.0% | |
| TTTACAGTTGGAAGCTGAGG+AGG | + | chr4_1:19096801-19096820 | None:intergenic | 45.0% | |
| TCGGATCAAATCCTGAAGCA+TGG | + | chr4_1:19096920-19096939 | None:intergenic | 45.0% | |
| CTTTGGCCCTATCTGGATTA+TGG | - | chr4_1:19097101-19097120 | Msa0539010:intron | 45.0% | |
| GCTTATTGGAGCTTATCTGC+TGG | + | chr4_1:19097324-19097343 | None:intergenic | 45.0% | |
| CAAGCAGACACCTAGTTACT+TGG | - | chr4_1:19097349-19097368 | Msa0539010:intron | 45.0% | |
| TGGTTCACGACCAAGTAACT+AGG | + | chr4_1:19097362-19097381 | None:intergenic | 45.0% | |
| GTTACTTGGTCGTGAACCAT+AGG | - | chr4_1:19097363-19097382 | Msa0539010:intron | 45.0% | |
| CACCAAGAGACTATCACTAC+TGG | + | chr4_1:19097634-19097653 | None:intergenic | 45.0% | |
| GGCATGAACAAAGCTTATCC+TGG | - | chr4_1:19097760-19097779 | Msa0539010:intron | 45.0% | |
| ACAAAGCTTATCCTGGGGAA+AGG | - | chr4_1:19097767-19097786 | Msa0539010:intron | 45.0% | |
| AAGGAGCGGTTCACAAATAG+AGG | - | chr4_1:19097786-19097805 | Msa0539010:intron | 45.0% | |
| CGTTAGCTGCATTTCTTTCC+GGG | - | chr4_1:19098120-19098139 | Msa0539010:intron | 45.0% | |
| TATAGAGGCCTACAGGATAC+AGG | - | chr4_1:19098162-19098181 | Msa0539010:intron | 45.0% | |
| ATAGAGGCCTACAGGATACA+GGG | - | chr4_1:19098163-19098182 | Msa0539010:intron | 45.0% | |
| GGAATTTCCCTGTATCCTGT+AGG | + | chr4_1:19098173-19098192 | None:intergenic | 45.0% | |
| CTCCTTAGCACACTGAAACA+CGG | + | chr4_1:19098232-19098251 | None:intergenic | 45.0% | |
| GTTCTATGTTTCTCCCCAAC+TGG | - | chr4_1:19098271-19098290 | Msa0539010:intron | 45.0% | |
| CACTTACCTACTTCCAGTTG+GGG | + | chr4_1:19098287-19098306 | None:intergenic | 45.0% | |
| CTGTTGGATCCATAAGAAGC+TGG | + | chr4_1:19098338-19098357 | None:intergenic | 45.0% | |
| ! | AGGAGTAGGCAAAGGTACAT+TGG | + | chr4_1:19098684-19098703 | None:intergenic | 45.0% |
| AATGTACCTTTGCCTACTCC+TGG | - | chr4_1:19098683-19098702 | Msa0539010:five_prime_UTR | 45.0% | |
| GACTTCCCCATGTTGATGTA+TGG | - | chr4_1:19098771-19098790 | Msa0539010:five_prime_UTR | 45.0% | |
| GGAGACCATACATCAACATG+GGG | + | chr4_1:19098779-19098798 | None:intergenic | 45.0% | |
| ! | GGTCTCCTAGAACCCTTTTT+CGG | - | chr4_1:19098792-19098811 | Msa0539010:five_prime_UTR | 45.0% |
| ! | TGAAGCACCCTCTTCTTTCC+CGG | - | chr4_1:19096551-19096570 | Msa0539010:intron | 50.0% |
| CGGTTCCATATAGGGGAAAG+AGG | - | chr4_1:19096571-19096590 | Msa0539010:intron | 50.0% | |
| TTGTAGTGTGTTCTTCCGGC+TGG | - | chr4_1:19096885-19096904 | Msa0539010:CDS | 50.0% | |
| ! | GGTGTTGAGTTCCATGCTTC+AGG | - | chr4_1:19096906-19096925 | Msa0539010:CDS | 50.0% |
| GGAAACGTGGAAGGATCGTT+CGG | + | chr4_1:19096939-19096958 | None:intergenic | 50.0% | |
| GAACCATAGGAACGAGGTCA+TGG | - | chr4_1:19097376-19097395 | Msa0539010:intron | 50.0% | |
| ACACCATGACCTCGTTCCTA+TGG | + | chr4_1:19097382-19097401 | None:intergenic | 50.0% | |
| AGGAACGAGGTCATGGTGTA+CGG | - | chr4_1:19097383-19097402 | Msa0539010:intron | 50.0% | |
| !! | TGTGCTAAGGAGTACCCTTG+AGG | - | chr4_1:19098240-19098259 | Msa0539010:CDS | 50.0% |
| GTTTCTCCCCAACTGGAAGT+AGG | - | chr4_1:19098278-19098297 | Msa0539010:intron | 50.0% | |
| ACCTTTGCCTACTCCTGGAA+AGG | - | chr4_1:19098688-19098707 | Msa0539010:five_prime_UTR | 50.0% | |
| TCCTTTCCAGGAGTAGGCAA+AGG | + | chr4_1:19098692-19098711 | None:intergenic | 50.0% | |
| AACAGAACTCGCTCCTTTCC+AGG | + | chr4_1:19098704-19098723 | None:intergenic | 50.0% | |
| ACATGGGGAAGTCCACAGTT+TGG | + | chr4_1:19098764-19098783 | None:intergenic | 50.0% | |
| AACAAAGGCTACCATGGCCC+TGG | - | chr4_1:19096708-19096727 | Msa0539010:intron | 55.0% | |
| GATACATCCAACCAGGGCCA+TGG | + | chr4_1:19096722-19096741 | None:intergenic | 55.0% | |
| ACAGTTGGAAGCTGAGGAGG+TGG | + | chr4_1:19096798-19096817 | None:intergenic | 55.0% | |
| GCATGGAACTCAACACCAGC+CGG | + | chr4_1:19096903-19096922 | None:intergenic | 55.0% | |
| ACGATCCTTCCACGTTTCCG+CGG | - | chr4_1:19096940-19096959 | Msa0539010:CDS | 55.0% | |
| TAACTCCGCGGAAACGTGGA+AGG | + | chr4_1:19096948-19096967 | None:intergenic | 55.0% | |
| AGGATAACTCCGCGGAAACG+TGG | + | chr4_1:19096952-19096971 | None:intergenic | 55.0% | |
| GGTCGTGAACCATAGGAACG+AGG | - | chr4_1:19097370-19097389 | Msa0539010:intron | 55.0% | |
| GCTTATCCTGGGGAAAGGAG+CGG | - | chr4_1:19097772-19097791 | Msa0539010:intron | 55.0% | |
| CGCCGTGTTTCAGTGTGCTA+AGG | - | chr4_1:19098227-19098246 | Msa0539010:CDS | 55.0% | |
| ACTCGCTCCTTTCCAGGAGT+AGG | + | chr4_1:19098698-19098717 | None:intergenic | 55.0% | |
| ! | GGGAAGTCCACAGTTTGGTG+GGG | + | chr4_1:19098759-19098778 | None:intergenic | 55.0% |
| GGGGAAGTCCACAGTTTGGT+GGG | + | chr4_1:19098760-19098779 | None:intergenic | 55.0% | |
| TGGGGAAGTCCACAGTTTGG+TGG | + | chr4_1:19098761-19098780 | None:intergenic | 55.0% | |
| AAGGCTACCATGGCCCTGGT+TGG | - | chr4_1:19096712-19096731 | Msa0539010:intron | 60.0% | |
| GTTGGAAGCTGAGGAGGTGG+AGG | + | chr4_1:19096795-19096814 | None:intergenic | 60.0% | |
| TGTGAACCGCTCCTTTCCCC+AGG | + | chr4_1:19097781-19097800 | None:intergenic | 60.0% | |
| GTAGAGGCCCCACCAAACTG+TGG | - | chr4_1:19098749-19098768 | Msa0539010:five_prime_UTR | 60.0% | |
| GGAAGCTGAGGAGGTGGAGG+AGG | + | chr4_1:19096792-19096811 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 19096330 | 19098850 | 19096330 | ID=Msa0539010;Name=Msa0539010 |
| chr4_1 | mRNA | 19096330 | 19098850 | 19096330 | ID=Msa0539010-mRNA-1;Parent=Msa0539010;Name=Msa0539010-mRNA-1;_AED=0.48;_eAED=0.48;_QI=312|1|0.75|1|1|1|4|0|224 |
| chr4_1 | exon | 19096330 | 19096534 | 19096330 | ID=Msa0539010-mRNA-1:exon:5645;Parent=Msa0539010-mRNA-1 |
| chr4_1 | exon | 19096881 | 19097082 | 19096881 | ID=Msa0539010-mRNA-1:exon:5644;Parent=Msa0539010-mRNA-1 |
| chr4_1 | exon | 19098196 | 19098289 | 19098196 | ID=Msa0539010-mRNA-1:exon:5643;Parent=Msa0539010-mRNA-1 |
| chr4_1 | exon | 19098365 | 19098850 | 19098365 | ID=Msa0539010-mRNA-1:exon:5642;Parent=Msa0539010-mRNA-1 |
| chr4_1 | five_prime_UTR | 19098539 | 19098850 | 19098539 | ID=Msa0539010-mRNA-1:five_prime_utr;Parent=Msa0539010-mRNA-1 |
| chr4_1 | CDS | 19098365 | 19098538 | 19098365 | ID=Msa0539010-mRNA-1:cds;Parent=Msa0539010-mRNA-1 |
| chr4_1 | CDS | 19098196 | 19098289 | 19098196 | ID=Msa0539010-mRNA-1:cds;Parent=Msa0539010-mRNA-1 |
| chr4_1 | CDS | 19096881 | 19097082 | 19096881 | ID=Msa0539010-mRNA-1:cds;Parent=Msa0539010-mRNA-1 |
| chr4_1 | CDS | 19096330 | 19096534 | 19096330 | ID=Msa0539010-mRNA-1:cds;Parent=Msa0539010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
