AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1154680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1154680 MtrunA17_Chr7g0245901 83.468 248 3 3 1 214 1 244 7.71e-127 394
Msa1154680 MtrunA17_Chr7g0245901 94.286 35 2 0 215 249 367 401 4.49e-13 68.6
Msa1154680 MtrunA17_Chr8g0351691 62.656 241 50 4 9 215 13 247 4.08e-87 282
Msa1154680 MtrunA17_Chr8g0351691 85.714 35 5 0 215 249 368 402 5.98e-11 62.4
Msa1154680 MtrunA17_Chr5g0448771 35.268 224 106 6 8 207 11 219 6.62e-29 115
Msa1154680 MtrunA17_Chr6g0457451 80.597 67 11 2 183 249 1 65 3.48e-26 98.2
Msa1154680 MtrunA17_Chr4g0069791 39.844 128 55 4 78 186 126 250 3.28e-16 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1154680 AT3G60860.1 61.446 249 59 4 1 215 1 246 5.32e-87 282
Msa1154680 AT1G01960.1 58.333 264 62 7 1 230 1 250 4.20e-79 259
Msa1154680 AT4G38200.1 33.186 226 126 5 1 207 1 220 5.35e-26 107
Msa1154680 AT4G35380.1 31.336 217 126 5 8 207 11 221 2.17e-23 99.4
Msa1154680 AT3G43300.2 37.415 147 70 4 78 203 114 259 8.09e-15 74.3
Msa1154680 AT3G43300.3 39.552 134 59 4 78 190 114 246 8.17e-15 74.3
Msa1154680 AT3G43300.1 39.552 134 59 4 78 190 114 246 8.66e-15 74.3

Find 64 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTACACTCATGAGCGAGTT+TGG 0.307190 7_4:-42265056 None:intergenic
GATTGTCGTGGCGGAATTGA+TGG 0.348846 7_4:+42265648 Msa1154680:CDS
TGATGATGCTATGGAGCTTT+TGG 0.354485 7_4:+42265417 Msa1154680:CDS
CTCGCTAGAAACTTCGATTC+AGG 0.363997 7_4:-42265358 None:intergenic
ATCAATTCCGCCACGACAAT+CGG 0.385243 7_4:-42265646 None:intergenic
TCGGCTGTAGCATCGGAATT+CGG 0.393989 7_4:-42265121 None:intergenic
CTCATCGACTGCGGATCAGC+GGG 0.400950 7_4:-42266081 None:intergenic
AAACTTGGGAATGGCTTCTT+CGG 0.402342 7_4:+42264955 None:intergenic
GATGCTACAGCCGATGATTC+CGG 0.409830 7_4:+42265130 Msa1154680:CDS
AGATGTTAGTGATTGTCTTC+AGG 0.414833 7_4:+42265587 Msa1154680:CDS
TCAATTTCGCTTCGGATTCA+CGG 0.417220 7_4:+42265469 Msa1154680:CDS
CTTCGGTGAAGTGAGGGTTT+CGG 0.431738 7_4:-42265086 None:intergenic
TTCGGAGATTGAATATTCTT+CGG 0.434493 7_4:-42265103 None:intergenic
CAGTAACTTCAATTTCGCTT+CGG 0.448023 7_4:+42265461 Msa1154680:CDS
CGCGGTGAAGCCGATGCTGC+TGG 0.451697 7_4:+42265328 Msa1154680:CDS
GAGAGGGAAGATTGTGGCAT+TGG 0.465759 7_4:+42266101 Msa1154680:CDS
AGTGATTGTCTTCAGGAGAA+TGG 0.469720 7_4:+42265594 Msa1154680:CDS
GACGATGACGTGGCTGAGAC+GGG 0.481472 7_4:-42264987 None:intergenic
TGAAGTGAGGGTTTCGGTGA+CGG 0.482948 7_4:-42265080 None:intergenic
CCTCCATCATGAAGCGGTCC+AGG 0.486217 7_4:-42265172 None:intergenic
GACGTGGCTGAGACGGGAAT+CGG 0.486245 7_4:-42264981 None:intergenic
GGACGATGACGTGGCTGAGA+CGG 0.490496 7_4:-42264988 None:intergenic
AGCCGATGATTCCGGTGAGC+CGG 0.495688 7_4:+42265138 Msa1154680:CDS
GCCACGACAATCGGTTGAAT+CGG 0.506253 7_4:-42265637 None:intergenic
TGTGTTGAAGATCGCCGATC+CGG 0.510801 7_4:+42265264 Msa1154680:CDS
GGTCCAGGTAGTGAAACTTC+CGG 0.511737 7_4:-42265157 None:intergenic
TCAACATCAGATTTCTCCAC+TGG 0.517634 7_4:-42265673 None:intergenic
GGAATCATCGGCTGTAGCAT+CGG 0.529309 7_4:-42265128 None:intergenic
TTCTGTATCGCATCAACCGC+CGG 0.530389 7_4:-42265283 None:intergenic
CGACCTAGGTGATGATGCTA+TGG 0.532394 7_4:+42265408 Msa1154680:CDS
TCTAGCGAGATTGATTGAAT+CGG 0.538223 7_4:+42265372 Msa1154680:CDS
TAGTGAAACTTCCGGCTCAC+CGG 0.539564 7_4:-42265149 None:intergenic
TCTCATCGACTGCGGATCAG+CGG 0.547808 7_4:-42266082 None:intergenic
TTCCGGCTCACCGGAATCAT+CGG 0.550605 7_4:-42265140 None:intergenic
TGTCTTCAGGAGAATGGAGG+CGG 0.560761 7_4:+42265600 Msa1154680:CDS
TATCGCATCAACCGCCGGAT+CGG 0.571028 7_4:-42265278 None:intergenic
AATATTCTTCGGTGAAGTGA+GGG 0.571910 7_4:-42265092 None:intergenic
CATCGACTGCGGATCAGCGG+GGG 0.573357 7_4:-42266079 None:intergenic
GCTGATCCGCAGTCGATGAG+AGG 0.577581 7_4:+42266084 Msa1154680:CDS
ATCGCTCCTCCATCATGAAG+CGG 0.578712 7_4:-42265178 None:intergenic
CTACCTGGACCGCTTCATGA+TGG 0.579347 7_4:+42265169 Msa1154680:CDS
AGGACATTCACCAGCAGCAT+CGG 0.582674 7_4:-42265338 None:intergenic
GAATATTCTTCGGTGAAGTG+AGG 0.583973 7_4:-42265093 None:intergenic
TCCGATTCAACCGATTGTCG+TGG 0.593468 7_4:+42265636 Msa1154680:CDS
GAGCCGGAAGTTTCACTACC+TGG 0.595363 7_4:+42265154 Msa1154680:CDS
CTGATCCGCAGTCGATGAGA+GGG 0.602486 7_4:+42266085 Msa1154680:CDS
ATACAGAAGCTGATTGCTGT+AGG 0.602783 7_4:+42265298 Msa1154680:CDS
CTATTTAGGTAGTAAGAATG+TGG 0.606504 7_4:+42265531 Msa1154680:intron
GTGTGTAAATGTCACGACCT+AGG 0.609737 7_4:+42265394 Msa1154680:CDS
CGAGAGCAGGGACGATGACG+TGG 0.620227 7_4:-42264997 None:intergenic
GGCGGAATTGATGGATCCAG+TGG 0.622504 7_4:+42265657 Msa1154680:CDS
ATCTTCCCTCTCATCGACTG+CGG 0.630559 7_4:-42266090 None:intergenic
GCTCCATAGCATCATCACCT+AGG 0.633823 7_4:-42265411 None:intergenic
CCTGGACCGCTTCATGATGG+AGG 0.634967 7_4:+42265172 Msa1154680:CDS
GTCGATGAGAGGGAAGATTG+TGG 0.635888 7_4:+42266095 Msa1154680:CDS
GTTGAAGATCGCCGATCCGG+CGG 0.637889 7_4:+42265267 Msa1154680:CDS
GATTCAACCGATTGTCGTGG+CGG 0.638327 7_4:+42265639 Msa1154680:CDS
CAGCATCGGCTTCACCGCGG+AGG 0.665534 7_4:-42265324 None:intergenic
TCATCGACTGCGGATCAGCG+GGG 0.668977 7_4:-42266080 None:intergenic
ATCGGCGATCTTCAACACAC+CGG 0.676397 7_4:-42265260 None:intergenic
GATTGTCTTCAGGAGAATGG+AGG 0.680465 7_4:+42265597 Msa1154680:CDS
GAATGTGGTGAATCAAACGA+CGG 0.729456 7_4:+42265546 Msa1154680:CDS
CAGCAGCATCGGCTTCACCG+CGG 0.733179 7_4:-42265327 None:intergenic
ATTGCTGTAGGTTACCTCCG+CGG 0.735072 7_4:+42265310 Msa1154680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATAACAAAAATAATGC+AGG + chr7_4:42265723-42265742 Msa1154680:intron 15.0%
!!! TTTTATAACAAAAATAATGC+AGG + chr7_4:42265723-42265742 Msa1154680:intron 15.0%
!!! ACTTGTTATGATATCTATTT+AGG + chr7_4:42265517-42265536 Msa1154680:intron 20.0%
!!! ACTTGTTATGATATCTATTT+AGG + chr7_4:42265517-42265536 Msa1154680:intron 20.0%
!!! ATTGTTTGCTTTTGATTGTA+AGG + chr7_4:42265494-42265513 Msa1154680:intron 25.0%
! AAAATAATGCAGGATATAGA+TGG + chr7_4:42265733-42265752 Msa1154680:intron 25.0%
!!! ATTGTTTGCTTTTGATTGTA+AGG + chr7_4:42265494-42265513 Msa1154680:intron 25.0%
! AAAATAATGCAGGATATAGA+TGG + chr7_4:42265733-42265752 Msa1154680:intron 25.0%
TTCGGAGATTGAATATTCTT+CGG - chr7_4:42265106-42265125 None:intergenic 30.0%
CTATTTAGGTAGTAAGAATG+TGG + chr7_4:42265531-42265550 Msa1154680:intron 30.0%
ATATGTTGGATGCAAAGTAT+TGG + chr7_4:42265878-42265897 Msa1154680:intron 30.0%
! TATGTTGGATGCAAAGTATT+GGG + chr7_4:42265879-42265898 Msa1154680:intron 30.0%
GGAGATTAGTATGTATAAGA+CGG + chr7_4:42265900-42265919 Msa1154680:intron 30.0%
! GGAGTTGTTGAAAATTTTGT+TGG + chr7_4:42266122-42266141 Msa1154680:CDS 30.0%
! AAAATTTTGTTGGAGAATGC+TGG + chr7_4:42266132-42266151 Msa1154680:CDS 30.0%
TTCGGAGATTGAATATTCTT+CGG - chr7_4:42265106-42265125 None:intergenic 30.0%
CTATTTAGGTAGTAAGAATG+TGG + chr7_4:42265531-42265550 Msa1154680:intron 30.0%
ATATGTTGGATGCAAAGTAT+TGG + chr7_4:42265878-42265897 Msa1154680:intron 30.0%
! TATGTTGGATGCAAAGTATT+GGG + chr7_4:42265879-42265898 Msa1154680:intron 30.0%
GGAGATTAGTATGTATAAGA+CGG + chr7_4:42265900-42265919 Msa1154680:intron 30.0%
! GGAGTTGTTGAAAATTTTGT+TGG + chr7_4:42266122-42266141 Msa1154680:CDS 30.0%
! AAAATTTTGTTGGAGAATGC+TGG + chr7_4:42266132-42266151 Msa1154680:CDS 30.0%
AATATTCTTCGGTGAAGTGA+GGG - chr7_4:42265095-42265114 None:intergenic 35.0%
TCTAGCGAGATTGATTGAAT+CGG + chr7_4:42265372-42265391 Msa1154680:CDS 35.0%
CAGTAACTTCAATTTCGCTT+CGG + chr7_4:42265461-42265480 Msa1154680:CDS 35.0%
AGATGTTAGTGATTGTCTTC+AGG + chr7_4:42265587-42265606 Msa1154680:CDS 35.0%
TAGTATGTATAAGACGGCTT+TGG + chr7_4:42265906-42265925 Msa1154680:intron 35.0%
! GATGATTTGGAGATTCAGAT+TGG + chr7_4:42265979-42265998 Msa1154680:intron 35.0%
! TTCAGATTGGTAATAAGCTG+AGG + chr7_4:42265992-42266011 Msa1154680:intron 35.0%
!!! GGATGCTTTTTTGGTGTTTA+GGG + chr7_4:42266017-42266036 Msa1154680:intron 35.0%
! CTGTTTTCAGAACTAGTGAA+AGG + chr7_4:42266157-42266176 Msa1154680:CDS 35.0%
AATATTCTTCGGTGAAGTGA+GGG - chr7_4:42265095-42265114 None:intergenic 35.0%
TCTAGCGAGATTGATTGAAT+CGG + chr7_4:42265372-42265391 Msa1154680:CDS 35.0%
CAGTAACTTCAATTTCGCTT+CGG + chr7_4:42265461-42265480 Msa1154680:CDS 35.0%
AGATGTTAGTGATTGTCTTC+AGG + chr7_4:42265587-42265606 Msa1154680:CDS 35.0%
TAGTATGTATAAGACGGCTT+TGG + chr7_4:42265906-42265925 Msa1154680:intron 35.0%
! GATGATTTGGAGATTCAGAT+TGG + chr7_4:42265979-42265998 Msa1154680:intron 35.0%
! TTCAGATTGGTAATAAGCTG+AGG + chr7_4:42265992-42266011 Msa1154680:intron 35.0%
!!! GGATGCTTTTTTGGTGTTTA+GGG + chr7_4:42266017-42266036 Msa1154680:intron 35.0%
! CTGTTTTCAGAACTAGTGAA+AGG + chr7_4:42266157-42266176 Msa1154680:CDS 35.0%
AAATCCTCAAAAACGCTTCC+TGG + chr7_4:42265023-42265042 Msa1154680:CDS 40.0%
TTTACACTCATGAGCGAGTT+TGG - chr7_4:42265059-42265078 None:intergenic 40.0%
GAATATTCTTCGGTGAAGTG+AGG - chr7_4:42265096-42265115 None:intergenic 40.0%
ATACAGAAGCTGATTGCTGT+AGG + chr7_4:42265298-42265317 Msa1154680:CDS 40.0%
!! TGATGATGCTATGGAGCTTT+TGG + chr7_4:42265417-42265436 Msa1154680:CDS 40.0%
TCAATTTCGCTTCGGATTCA+CGG + chr7_4:42265469-42265488 Msa1154680:CDS 40.0%
GAATGTGGTGAATCAAACGA+CGG + chr7_4:42265546-42265565 Msa1154680:CDS 40.0%
AGTGATTGTCTTCAGGAGAA+TGG + chr7_4:42265594-42265613 Msa1154680:CDS 40.0%
TCAACATCAGATTTCTCCAC+TGG - chr7_4:42265676-42265695 None:intergenic 40.0%
TCTATGACAGTGTTTGTGCA+AGG + chr7_4:42265700-42265719 Msa1154680:intron 40.0%
TTCGACGGATAAGGATATGT+TGG + chr7_4:42265864-42265883 Msa1154680:intron 40.0%
!! ATGTATAAGACGGCTTTGGA+AGG + chr7_4:42265910-42265929 Msa1154680:intron 40.0%
!! TGTATAAGACGGCTTTGGAA+GGG + chr7_4:42265911-42265930 Msa1154680:intron 40.0%
! AGATTGGTAATAAGCTGAGG+AGG + chr7_4:42265995-42266014 Msa1154680:intron 40.0%
! GATTGGTAATAAGCTGAGGA+GGG + chr7_4:42265996-42266015 Msa1154680:intron 40.0%
!!! GGGATGCTTTTTTGGTGTTT+AGG + chr7_4:42266016-42266035 Msa1154680:intron 40.0%
AAATCCTCAAAAACGCTTCC+TGG + chr7_4:42265023-42265042 Msa1154680:CDS 40.0%
TTTACACTCATGAGCGAGTT+TGG - chr7_4:42265059-42265078 None:intergenic 40.0%
GAATATTCTTCGGTGAAGTG+AGG - chr7_4:42265096-42265115 None:intergenic 40.0%
ATACAGAAGCTGATTGCTGT+AGG + chr7_4:42265298-42265317 Msa1154680:CDS 40.0%
!! TGATGATGCTATGGAGCTTT+TGG + chr7_4:42265417-42265436 Msa1154680:CDS 40.0%
TCAATTTCGCTTCGGATTCA+CGG + chr7_4:42265469-42265488 Msa1154680:CDS 40.0%
GAATGTGGTGAATCAAACGA+CGG + chr7_4:42265546-42265565 Msa1154680:CDS 40.0%
AGTGATTGTCTTCAGGAGAA+TGG + chr7_4:42265594-42265613 Msa1154680:CDS 40.0%
TCAACATCAGATTTCTCCAC+TGG - chr7_4:42265676-42265695 None:intergenic 40.0%
TCTATGACAGTGTTTGTGCA+AGG + chr7_4:42265700-42265719 Msa1154680:intron 40.0%
TTCGACGGATAAGGATATGT+TGG + chr7_4:42265864-42265883 Msa1154680:intron 40.0%
!! ATGTATAAGACGGCTTTGGA+AGG + chr7_4:42265910-42265929 Msa1154680:intron 40.0%
!! TGTATAAGACGGCTTTGGAA+GGG + chr7_4:42265911-42265930 Msa1154680:intron 40.0%
! AGATTGGTAATAAGCTGAGG+AGG + chr7_4:42265995-42266014 Msa1154680:intron 40.0%
! GATTGGTAATAAGCTGAGGA+GGG + chr7_4:42265996-42266015 Msa1154680:intron 40.0%
!!! GGGATGCTTTTTTGGTGTTT+AGG + chr7_4:42266016-42266035 Msa1154680:intron 40.0%
! TGAGGATTTTCTCGAGAGCA+GGG - chr7_4:42265012-42265031 None:intergenic 45.0%
! TTGAGGATTTTCTCGAGAGC+AGG - chr7_4:42265013-42265032 None:intergenic 45.0%
TCTATCTCCTCTCATCAACG+CGG + chr7_4:42265231-42265250 Msa1154680:intron 45.0%
CTCGCTAGAAACTTCGATTC+AGG - chr7_4:42265361-42265380 None:intergenic 45.0%
GTGTGTAAATGTCACGACCT+AGG + chr7_4:42265394-42265413 Msa1154680:CDS 45.0%
GATTGTCTTCAGGAGAATGG+AGG + chr7_4:42265597-42265616 Msa1154680:CDS 45.0%
ATCAATTCCGCCACGACAAT+CGG - chr7_4:42265649-42265668 None:intergenic 45.0%
! GATGGAGTTTTGCATCCATC+AGG + chr7_4:42265751-42265770 Msa1154680:intron 45.0%
GACAGTTGAGACTACGAATC+CGG + chr7_4:42265828-42265847 Msa1154680:intron 45.0%
TTTGCTGGATTCGACGGATA+AGG + chr7_4:42265855-42265874 Msa1154680:intron 45.0%
! TGAGGATTTTCTCGAGAGCA+GGG - chr7_4:42265012-42265031 None:intergenic 45.0%
! TTGAGGATTTTCTCGAGAGC+AGG - chr7_4:42265013-42265032 None:intergenic 45.0%
TCTATCTCCTCTCATCAACG+CGG + chr7_4:42265231-42265250 Msa1154680:intron 45.0%
CTCGCTAGAAACTTCGATTC+AGG - chr7_4:42265361-42265380 None:intergenic 45.0%
GTGTGTAAATGTCACGACCT+AGG + chr7_4:42265394-42265413 Msa1154680:CDS 45.0%
GATTGTCTTCAGGAGAATGG+AGG + chr7_4:42265597-42265616 Msa1154680:CDS 45.0%
ATCAATTCCGCCACGACAAT+CGG - chr7_4:42265649-42265668 None:intergenic 45.0%
! GATGGAGTTTTGCATCCATC+AGG + chr7_4:42265751-42265770 Msa1154680:intron 45.0%
GACAGTTGAGACTACGAATC+CGG + chr7_4:42265828-42265847 Msa1154680:intron 45.0%
TTTGCTGGATTCGACGGATA+AGG + chr7_4:42265855-42265874 Msa1154680:intron 45.0%
!!! TTCGCCAGGAAGCGTTTTTG+AGG - chr7_4:42265030-42265049 None:intergenic 50.0%
TGAAGTGAGGGTTTCGGTGA+CGG - chr7_4:42265083-42265102 None:intergenic 50.0%
CTTCGGTGAAGTGAGGGTTT+CGG - chr7_4:42265089-42265108 None:intergenic 50.0%
! TCGGCTGTAGCATCGGAATT+CGG - chr7_4:42265124-42265143 None:intergenic 50.0%
! GGAATCATCGGCTGTAGCAT+CGG - chr7_4:42265131-42265150 None:intergenic 50.0%
GATGCTACAGCCGATGATTC+CGG + chr7_4:42265130-42265149 Msa1154680:CDS 50.0%
TAGTGAAACTTCCGGCTCAC+CGG - chr7_4:42265152-42265171 None:intergenic 50.0%
GGTCCAGGTAGTGAAACTTC+CGG - chr7_4:42265160-42265179 None:intergenic 50.0%
ATCGCTCCTCCATCATGAAG+CGG - chr7_4:42265181-42265200 None:intergenic 50.0%
ATCGGCGATCTTCAACACAC+CGG - chr7_4:42265263-42265282 None:intergenic 50.0%
TGTGTTGAAGATCGCCGATC+CGG + chr7_4:42265264-42265283 Msa1154680:CDS 50.0%
TTCTGTATCGCATCAACCGC+CGG - chr7_4:42265286-42265305 None:intergenic 50.0%
ATTGCTGTAGGTTACCTCCG+CGG + chr7_4:42265310-42265329 Msa1154680:CDS 50.0%
AGGACATTCACCAGCAGCAT+CGG - chr7_4:42265341-42265360 None:intergenic 50.0%
! CGACCTAGGTGATGATGCTA+TGG + chr7_4:42265408-42265427 Msa1154680:CDS 50.0%
GCTCCATAGCATCATCACCT+AGG - chr7_4:42265414-42265433 None:intergenic 50.0%
TGTCTTCAGGAGAATGGAGG+CGG + chr7_4:42265600-42265619 Msa1154680:CDS 50.0%
TCCGATTCAACCGATTGTCG+TGG + chr7_4:42265636-42265655 Msa1154680:CDS 50.0%
GCCACGACAATCGGTTGAAT+CGG - chr7_4:42265640-42265659 None:intergenic 50.0%
GATTCAACCGATTGTCGTGG+CGG + chr7_4:42265639-42265658 Msa1154680:CDS 50.0%
! GATTGTCGTGGCGGAATTGA+TGG + chr7_4:42265648-42265667 Msa1154680:CDS 50.0%
AGTTGAGACTACGAATCCGG+CGG + chr7_4:42265831-42265850 Msa1154680:intron 50.0%
!! ATAAGACGGCTTTGGAAGGG+AGG + chr7_4:42265914-42265933 Msa1154680:intron 50.0%
CGAGGAGAGGGATGATGATT+TGG + chr7_4:42265966-42265985 Msa1154680:intron 50.0%
!!! GCTGAGGAGGGATGCTTTTT+TGG + chr7_4:42266008-42266027 Msa1154680:intron 50.0%
GTCTATGAAGTCGCCGTCTA+AGG + chr7_4:42266053-42266072 Msa1154680:intron 50.0%
TATGAAGTCGCCGTCTAAGG+AGG + chr7_4:42266056-42266075 Msa1154680:intron 50.0%
! ATCTTCCCTCTCATCGACTG+CGG - chr7_4:42266093-42266112 None:intergenic 50.0%
GTCGATGAGAGGGAAGATTG+TGG + chr7_4:42266095-42266114 Msa1154680:CDS 50.0%
GAGAGGGAAGATTGTGGCAT+TGG + chr7_4:42266101-42266120 Msa1154680:CDS 50.0%
!!! TTCGCCAGGAAGCGTTTTTG+AGG - chr7_4:42265030-42265049 None:intergenic 50.0%
TGAAGTGAGGGTTTCGGTGA+CGG - chr7_4:42265083-42265102 None:intergenic 50.0%
CTTCGGTGAAGTGAGGGTTT+CGG - chr7_4:42265089-42265108 None:intergenic 50.0%
! TCGGCTGTAGCATCGGAATT+CGG - chr7_4:42265124-42265143 None:intergenic 50.0%
! GGAATCATCGGCTGTAGCAT+CGG - chr7_4:42265131-42265150 None:intergenic 50.0%
GATGCTACAGCCGATGATTC+CGG + chr7_4:42265130-42265149 Msa1154680:CDS 50.0%
TAGTGAAACTTCCGGCTCAC+CGG - chr7_4:42265152-42265171 None:intergenic 50.0%
GGTCCAGGTAGTGAAACTTC+CGG - chr7_4:42265160-42265179 None:intergenic 50.0%
ATCGCTCCTCCATCATGAAG+CGG - chr7_4:42265181-42265200 None:intergenic 50.0%
ATCGGCGATCTTCAACACAC+CGG - chr7_4:42265263-42265282 None:intergenic 50.0%
TGTGTTGAAGATCGCCGATC+CGG + chr7_4:42265264-42265283 Msa1154680:CDS 50.0%
TTCTGTATCGCATCAACCGC+CGG - chr7_4:42265286-42265305 None:intergenic 50.0%
ATTGCTGTAGGTTACCTCCG+CGG + chr7_4:42265310-42265329 Msa1154680:CDS 50.0%
AGGACATTCACCAGCAGCAT+CGG - chr7_4:42265341-42265360 None:intergenic 50.0%
! CGACCTAGGTGATGATGCTA+TGG + chr7_4:42265408-42265427 Msa1154680:CDS 50.0%
GCTCCATAGCATCATCACCT+AGG - chr7_4:42265414-42265433 None:intergenic 50.0%
TGTCTTCAGGAGAATGGAGG+CGG + chr7_4:42265600-42265619 Msa1154680:CDS 50.0%
TCCGATTCAACCGATTGTCG+TGG + chr7_4:42265636-42265655 Msa1154680:CDS 50.0%
GCCACGACAATCGGTTGAAT+CGG - chr7_4:42265640-42265659 None:intergenic 50.0%
GATTCAACCGATTGTCGTGG+CGG + chr7_4:42265639-42265658 Msa1154680:CDS 50.0%
! GATTGTCGTGGCGGAATTGA+TGG + chr7_4:42265648-42265667 Msa1154680:CDS 50.0%
AGTTGAGACTACGAATCCGG+CGG + chr7_4:42265831-42265850 Msa1154680:intron 50.0%
!! ATAAGACGGCTTTGGAAGGG+AGG + chr7_4:42265914-42265933 Msa1154680:intron 50.0%
CGAGGAGAGGGATGATGATT+TGG + chr7_4:42265966-42265985 Msa1154680:intron 50.0%
!!! GCTGAGGAGGGATGCTTTTT+TGG + chr7_4:42266008-42266027 Msa1154680:intron 50.0%
GTCTATGAAGTCGCCGTCTA+AGG + chr7_4:42266053-42266072 Msa1154680:intron 50.0%
TATGAAGTCGCCGTCTAAGG+AGG + chr7_4:42266056-42266075 Msa1154680:intron 50.0%
! ATCTTCCCTCTCATCGACTG+CGG - chr7_4:42266093-42266112 None:intergenic 50.0%
GTCGATGAGAGGGAAGATTG+TGG + chr7_4:42266095-42266114 Msa1154680:CDS 50.0%
GAGAGGGAAGATTGTGGCAT+TGG + chr7_4:42266101-42266120 Msa1154680:CDS 50.0%
! GAGTTTGGCGTGTTTTCGCC+AGG - chr7_4:42265044-42265063 None:intergenic 55.0%
TTCCGGCTCACCGGAATCAT+CGG - chr7_4:42265143-42265162 None:intergenic 55.0%
GAGCCGGAAGTTTCACTACC+TGG + chr7_4:42265154-42265173 Msa1154680:CDS 55.0%
CTACCTGGACCGCTTCATGA+TGG + chr7_4:42265169-42265188 Msa1154680:CDS 55.0%
TATCGCATCAACCGCCGGAT+CGG - chr7_4:42265281-42265300 None:intergenic 55.0%
! GGCGGAATTGATGGATCCAG+TGG + chr7_4:42265657-42265676 Msa1154680:CDS 55.0%
TCCATCAGGTACGCCGAGTA+AGG + chr7_4:42265765-42265784 Msa1154680:intron 55.0%
ACCTTACTCGGCGTACCTGA+TGG - chr7_4:42265769-42265788 None:intergenic 55.0%
AGGTACGCCGAGTAAGGTTG+TGG + chr7_4:42265771-42265790 Msa1154680:intron 55.0%
GCCATCGCCACAACCTTACT+CGG - chr7_4:42265781-42265800 None:intergenic 55.0%
GTTGTGGCGATGGCTCATGA+TGG + chr7_4:42265787-42265806 Msa1154680:intron 55.0%
! TACGAATCCGGCGGATTTGC+TGG + chr7_4:42265840-42265859 Msa1154680:intron 55.0%
GTCGAATCCAGCAAATCCGC+CGG - chr7_4:42265850-42265869 None:intergenic 55.0%
!! GGCGGATTTGCTGGATTCGA+CGG + chr7_4:42265849-42265868 Msa1154680:intron 55.0%
!! ACGGCTTTGGAAGGGAGGAA+AGG + chr7_4:42265919-42265938 Msa1154680:intron 55.0%
!! CGGCTTTGGAAGGGAGGAAA+GGG + chr7_4:42265920-42265939 Msa1154680:intron 55.0%
!! GGCTTTGGAAGGGAGGAAAG+GGG + chr7_4:42265921-42265940 Msa1154680:intron 55.0%
! TCTCATCGACTGCGGATCAG+CGG - chr7_4:42266085-42266104 None:intergenic 55.0%
CTGATCCGCAGTCGATGAGA+GGG + chr7_4:42266085-42266104 Msa1154680:CDS 55.0%
! GAGTTTGGCGTGTTTTCGCC+AGG - chr7_4:42265044-42265063 None:intergenic 55.0%
TTCCGGCTCACCGGAATCAT+CGG - chr7_4:42265143-42265162 None:intergenic 55.0%
GAGCCGGAAGTTTCACTACC+TGG + chr7_4:42265154-42265173 Msa1154680:CDS 55.0%
CTACCTGGACCGCTTCATGA+TGG + chr7_4:42265169-42265188 Msa1154680:CDS 55.0%
TATCGCATCAACCGCCGGAT+CGG - chr7_4:42265281-42265300 None:intergenic 55.0%
! GGCGGAATTGATGGATCCAG+TGG + chr7_4:42265657-42265676 Msa1154680:CDS 55.0%
TCCATCAGGTACGCCGAGTA+AGG + chr7_4:42265765-42265784 Msa1154680:intron 55.0%
ACCTTACTCGGCGTACCTGA+TGG - chr7_4:42265769-42265788 None:intergenic 55.0%
AGGTACGCCGAGTAAGGTTG+TGG + chr7_4:42265771-42265790 Msa1154680:intron 55.0%
GCCATCGCCACAACCTTACT+CGG - chr7_4:42265781-42265800 None:intergenic 55.0%
GTTGTGGCGATGGCTCATGA+TGG + chr7_4:42265787-42265806 Msa1154680:intron 55.0%
! TACGAATCCGGCGGATTTGC+TGG + chr7_4:42265840-42265859 Msa1154680:intron 55.0%
GTCGAATCCAGCAAATCCGC+CGG - chr7_4:42265850-42265869 None:intergenic 55.0%
!! GGCGGATTTGCTGGATTCGA+CGG + chr7_4:42265849-42265868 Msa1154680:intron 55.0%
!! ACGGCTTTGGAAGGGAGGAA+AGG + chr7_4:42265919-42265938 Msa1154680:intron 55.0%
!! CGGCTTTGGAAGGGAGGAAA+GGG + chr7_4:42265920-42265939 Msa1154680:intron 55.0%
!! GGCTTTGGAAGGGAGGAAAG+GGG + chr7_4:42265921-42265940 Msa1154680:intron 55.0%
! TCTCATCGACTGCGGATCAG+CGG - chr7_4:42266085-42266104 None:intergenic 55.0%
CTGATCCGCAGTCGATGAGA+GGG + chr7_4:42266085-42266104 Msa1154680:CDS 55.0%
GACGTGGCTGAGACGGGAAT+CGG - chr7_4:42264984-42265003 None:intergenic 60.0%
GACGATGACGTGGCTGAGAC+GGG - chr7_4:42264990-42265009 None:intergenic 60.0%
GGACGATGACGTGGCTGAGA+CGG - chr7_4:42264991-42265010 None:intergenic 60.0%
AGCCGATGATTCCGGTGAGC+CGG + chr7_4:42265138-42265157 Msa1154680:CDS 60.0%
CCTCCATCATGAAGCGGTCC+AGG - chr7_4:42265175-42265194 None:intergenic 60.0%
CCTGGACCGCTTCATGATGG+AGG + chr7_4:42265172-42265191 Msa1154680:CDS 60.0%
GTTGAAGATCGCCGATCCGG+CGG + chr7_4:42265267-42265286 Msa1154680:CDS 60.0%
GCCGAGTAAGGTTGTGGCGA+TGG + chr7_4:42265777-42265796 Msa1154680:intron 60.0%
AGGAAAGGGGAGCTGGTGGA+TGG + chr7_4:42265934-42265953 Msa1154680:intron 60.0%
ATGGAGAGGTGGTCGAGGAG+AGG + chr7_4:42265953-42265972 Msa1154680:intron 60.0%
TGGAGAGGTGGTCGAGGAGA+GGG + chr7_4:42265954-42265973 Msa1154680:intron 60.0%
! TCATCGACTGCGGATCAGCG+GGG - chr7_4:42266083-42266102 None:intergenic 60.0%
! CTCATCGACTGCGGATCAGC+GGG - chr7_4:42266084-42266103 None:intergenic 60.0%
GCTGATCCGCAGTCGATGAG+AGG + chr7_4:42266084-42266103 Msa1154680:CDS 60.0%
GACGTGGCTGAGACGGGAAT+CGG - chr7_4:42264984-42265003 None:intergenic 60.0%
GACGATGACGTGGCTGAGAC+GGG - chr7_4:42264990-42265009 None:intergenic 60.0%
GGACGATGACGTGGCTGAGA+CGG - chr7_4:42264991-42265010 None:intergenic 60.0%
AGCCGATGATTCCGGTGAGC+CGG + chr7_4:42265138-42265157 Msa1154680:CDS 60.0%
CCTCCATCATGAAGCGGTCC+AGG - chr7_4:42265175-42265194 None:intergenic 60.0%
CCTGGACCGCTTCATGATGG+AGG + chr7_4:42265172-42265191 Msa1154680:CDS 60.0%
GTTGAAGATCGCCGATCCGG+CGG + chr7_4:42265267-42265286 Msa1154680:CDS 60.0%
GCCGAGTAAGGTTGTGGCGA+TGG + chr7_4:42265777-42265796 Msa1154680:intron 60.0%
AGGAAAGGGGAGCTGGTGGA+TGG + chr7_4:42265934-42265953 Msa1154680:intron 60.0%
ATGGAGAGGTGGTCGAGGAG+AGG + chr7_4:42265953-42265972 Msa1154680:intron 60.0%
TGGAGAGGTGGTCGAGGAGA+GGG + chr7_4:42265954-42265973 Msa1154680:intron 60.0%
! TCATCGACTGCGGATCAGCG+GGG - chr7_4:42266083-42266102 None:intergenic 60.0%
! CTCATCGACTGCGGATCAGC+GGG - chr7_4:42266084-42266103 None:intergenic 60.0%
GCTGATCCGCAGTCGATGAG+AGG + chr7_4:42266084-42266103 Msa1154680:CDS 60.0%
CGAGAGCAGGGACGATGACG+TGG - chr7_4:42265000-42265019 None:intergenic 65.0%
! GAGCTCGCCGCGTTGATGAG+AGG - chr7_4:42265241-42265260 None:intergenic 65.0%
CTCATCAACGCGGCGAGCTC+CGG + chr7_4:42265241-42265260 Msa1154680:intron 65.0%
!! CAGCAGCATCGGCTTCACCG+CGG - chr7_4:42265330-42265349 None:intergenic 65.0%
GGAAGGGAGGAAAGGGGAGC+TGG + chr7_4:42265927-42265946 Msa1154680:intron 65.0%
AGGGAGGAAAGGGGAGCTGG+TGG + chr7_4:42265930-42265949 Msa1154680:intron 65.0%
! AGGGGAGCTGGTGGATGGAG+AGG + chr7_4:42265939-42265958 Msa1154680:intron 65.0%
! GGAGCTGGTGGATGGAGAGG+TGG + chr7_4:42265942-42265961 Msa1154680:intron 65.0%
GGTGGATGGAGAGGTGGTCG+AGG + chr7_4:42265948-42265967 Msa1154680:intron 65.0%
TCAGCGGGGGCCTCCTTAGA+CGG - chr7_4:42266069-42266088 None:intergenic 65.0%
! CATCGACTGCGGATCAGCGG+GGG - chr7_4:42266082-42266101 None:intergenic 65.0%
CGAGAGCAGGGACGATGACG+TGG - chr7_4:42265000-42265019 None:intergenic 65.0%
! GAGCTCGCCGCGTTGATGAG+AGG - chr7_4:42265241-42265260 None:intergenic 65.0%
CTCATCAACGCGGCGAGCTC+CGG + chr7_4:42265241-42265260 Msa1154680:intron 65.0%
!! CAGCAGCATCGGCTTCACCG+CGG - chr7_4:42265330-42265349 None:intergenic 65.0%
GGAAGGGAGGAAAGGGGAGC+TGG + chr7_4:42265927-42265946 Msa1154680:intron 65.0%
AGGGAGGAAAGGGGAGCTGG+TGG + chr7_4:42265930-42265949 Msa1154680:intron 65.0%
! AGGGGAGCTGGTGGATGGAG+AGG + chr7_4:42265939-42265958 Msa1154680:intron 65.0%
! GGAGCTGGTGGATGGAGAGG+TGG + chr7_4:42265942-42265961 Msa1154680:intron 65.0%
GGTGGATGGAGAGGTGGTCG+AGG + chr7_4:42265948-42265967 Msa1154680:intron 65.0%
TCAGCGGGGGCCTCCTTAGA+CGG - chr7_4:42266069-42266088 None:intergenic 65.0%
! CATCGACTGCGGATCAGCGG+GGG - chr7_4:42266082-42266101 None:intergenic 65.0%
!! CAGCATCGGCTTCACCGCGG+AGG - chr7_4:42265327-42265346 None:intergenic 70.0%
CGCGGTGAAGCCGATGCTGC+TGG + chr7_4:42265328-42265347 Msa1154680:CDS 70.0%
!! CAGCATCGGCTTCACCGCGG+AGG - chr7_4:42265327-42265346 None:intergenic 70.0%
CGCGGTGAAGCCGATGCTGC+TGG + chr7_4:42265328-42265347 Msa1154680:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 42264965 42266182 42264965 ID=Msa1154680;Name=Msa1154680
chr7_4 mRNA 42264965 42266182 42264965 ID=Msa1154680-mRNA-1;Parent=Msa1154680;Name=Msa1154680-mRNA-1;_AED=0.37;_eAED=0.38;_QI=0|0|0|0.5|0|0|4|0|249
chr7_4 exon 42264965 42265203 42264965 ID=Msa1154680-mRNA-1:exon:10377;Parent=Msa1154680-mRNA-1
chr7_4 exon 42265258 42265490 42265258 ID=Msa1154680-mRNA-1:exon:10378;Parent=Msa1154680-mRNA-1
chr7_4 exon 42265539 42265708 42265539 ID=Msa1154680-mRNA-1:exon:10379;Parent=Msa1154680-mRNA-1
chr7_4 exon 42266075 42266182 42266075 ID=Msa1154680-mRNA-1:exon:10380;Parent=Msa1154680-mRNA-1
chr7_4 CDS 42264965 42265203 42264965 ID=Msa1154680-mRNA-1:cds;Parent=Msa1154680-mRNA-1
chr7_4 CDS 42265258 42265490 42265258 ID=Msa1154680-mRNA-1:cds;Parent=Msa1154680-mRNA-1
chr7_4 CDS 42265539 42265708 42265539 ID=Msa1154680-mRNA-1:cds;Parent=Msa1154680-mRNA-1
chr7_4 CDS 42266075 42266182 42266075 ID=Msa1154680-mRNA-1:cds;Parent=Msa1154680-mRNA-1
Gene Sequence

>Msa1154680

ATGGCTTCTTCGGAAGCCGATTCCCGTCTCAGCCACGTCATCGTCCCTGCTCTCGAGAAAATCCTCAAAAACGCTTCCTGGCGAAAACACGCCAAACTCGCTCATGAGTGTAAATCCGTCACCGAAACCCTCACTTCACCGAAGAATATTCAATCTCCGAATTCCGATGCTACAGCCGATGATTCCGGTGAGCCGGAAGTTTCACTACCTGGACCGCTTCATGATGGAGGAGCGATCGACTCCGGTGTGTTGAAGATCGCCGATCCGGCGGTTGATGCGATACAGAAGCTGATTGCTGTAGGTTACCTCCGCGGTGAAGCCGATGCTGCTGGTGAATGTCCTGAATCGAAGTTTCTAGCGAGATTGATTGAATCGGTGTGTAAATGTCACGACCTAGGTGATGATGCTATGGAGCTTTTGGTGTTGAAGACGCTTTTATCTGCAGTAACTTCAATTTCGCTTCGGATTCACGGTAGTAAGAATGTGGTGAATCAAACGACGGCTAAAGCGTCGTTGATTCAGATGTTAGTGATTGTCTTCAGGAGAATGGAGGCGGATTCATCAACTGTTCCGATTCAACCGATTGTCGTGGCGGAATTGATGGATCCAGTGGAGAAATCTGATGTTGATAGCTCTATGACAGAGGCCCCCGCTGATCCGCAGTCGATGAGAGGGAAGATTGTGGCATTGGAGTTGTTGAAAATTTTGTTGGAGAATGCTGGAGCTGTTTTCAGAACTAGTGAAAGGTAG

Protein sequence

>Msa1154680

MASSEADSRLSHVIVPALEKILKNASWRKHAKLAHECKSVTETLTSPKNIQSPNSDATADDSGEPEVSLPGPLHDGGAIDSGVLKIADPAVDAIQKLIAVGYLRGEADAAGECPESKFLARLIESVCKCHDLGDDAMELLVLKTLLSAVTSISLRIHGSKNVVNQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVAELMDPVEKSDVDSSMTEAPADPQSMRGKIVALELLKILLENAGAVFRTSER*