Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1154680 | MCI03429.1 | 78.629 | 248 | 19 | 2 | 1 | 214 | 1 | 248 | 8.42e-130 | 377 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1154680 | sp|Q9LZX8|BIG2_ARATH | 61.446 | 249 | 59 | 4 | 1 | 215 | 1 | 246 | 5.24e-86 | 282 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1154680 | A0A392NW77 | 78.629 | 248 | 19 | 2 | 1 | 214 | 1 | 248 | 4.02e-130 | 377 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0042330 | Msa1154680 | 0.801253 | 9.826200e-49 | -8.615850e-47 |
Msa0827500 | Msa1154680 | 0.836329 | 9.977308e-57 | -8.615850e-47 |
Msa0197630 | Msa1154680 | 0.804798 | 1.817039e-49 | -8.615850e-47 |
Msa0378410 | Msa1154680 | 0.820196 | 7.793075e-53 | -8.615850e-47 |
Msa0269800 | Msa1154680 | 0.855898 | 4.631120e-62 | -8.615850e-47 |
Msa1154680 | Msa1256070 | 0.818999 | 1.462237e-52 | -8.615850e-47 |
Msa1154680 | Msa1300950 | 0.831854 | 1.318453e-55 | -8.615850e-47 |
Msa1154680 | Msa1381100 | 0.842681 | 2.228672e-58 | -8.615850e-47 |
Msa1154680 | Msa1404220 | 0.810269 | 1.253556e-50 | -8.615850e-47 |
Msa0539010 | Msa1154680 | 0.803264 | 3.787606e-49 | -8.615850e-47 |
Msa0573100 | Msa1154680 | 0.812969 | 3.243604e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1154680 | MtrunA17_Chr7g0245901 | 83.468 | 248 | 3 | 3 | 1 | 214 | 1 | 244 | 7.71e-127 | 394 |
Msa1154680 | MtrunA17_Chr7g0245901 | 94.286 | 35 | 2 | 0 | 215 | 249 | 367 | 401 | 4.49e-13 | 68.6 |
Msa1154680 | MtrunA17_Chr8g0351691 | 62.656 | 241 | 50 | 4 | 9 | 215 | 13 | 247 | 4.08e-87 | 282 |
Msa1154680 | MtrunA17_Chr8g0351691 | 85.714 | 35 | 5 | 0 | 215 | 249 | 368 | 402 | 5.98e-11 | 62.4 |
Msa1154680 | MtrunA17_Chr5g0448771 | 35.268 | 224 | 106 | 6 | 8 | 207 | 11 | 219 | 6.62e-29 | 115 |
Msa1154680 | MtrunA17_Chr6g0457451 | 80.597 | 67 | 11 | 2 | 183 | 249 | 1 | 65 | 3.48e-26 | 98.2 |
Msa1154680 | MtrunA17_Chr4g0069791 | 39.844 | 128 | 55 | 4 | 78 | 186 | 126 | 250 | 3.28e-16 | 77.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1154680 | AT3G60860.1 | 61.446 | 249 | 59 | 4 | 1 | 215 | 1 | 246 | 5.32e-87 | 282 |
Msa1154680 | AT1G01960.1 | 58.333 | 264 | 62 | 7 | 1 | 230 | 1 | 250 | 4.20e-79 | 259 |
Msa1154680 | AT4G38200.1 | 33.186 | 226 | 126 | 5 | 1 | 207 | 1 | 220 | 5.35e-26 | 107 |
Msa1154680 | AT4G35380.1 | 31.336 | 217 | 126 | 5 | 8 | 207 | 11 | 221 | 2.17e-23 | 99.4 |
Msa1154680 | AT3G43300.2 | 37.415 | 147 | 70 | 4 | 78 | 203 | 114 | 259 | 8.09e-15 | 74.3 |
Msa1154680 | AT3G43300.3 | 39.552 | 134 | 59 | 4 | 78 | 190 | 114 | 246 | 8.17e-15 | 74.3 |
Msa1154680 | AT3G43300.1 | 39.552 | 134 | 59 | 4 | 78 | 190 | 114 | 246 | 8.66e-15 | 74.3 |
Find 64 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTACACTCATGAGCGAGTT+TGG | 0.307190 | 7_4:-42265056 | None:intergenic |
GATTGTCGTGGCGGAATTGA+TGG | 0.348846 | 7_4:+42265648 | Msa1154680:CDS |
TGATGATGCTATGGAGCTTT+TGG | 0.354485 | 7_4:+42265417 | Msa1154680:CDS |
CTCGCTAGAAACTTCGATTC+AGG | 0.363997 | 7_4:-42265358 | None:intergenic |
ATCAATTCCGCCACGACAAT+CGG | 0.385243 | 7_4:-42265646 | None:intergenic |
TCGGCTGTAGCATCGGAATT+CGG | 0.393989 | 7_4:-42265121 | None:intergenic |
CTCATCGACTGCGGATCAGC+GGG | 0.400950 | 7_4:-42266081 | None:intergenic |
AAACTTGGGAATGGCTTCTT+CGG | 0.402342 | 7_4:+42264955 | None:intergenic |
GATGCTACAGCCGATGATTC+CGG | 0.409830 | 7_4:+42265130 | Msa1154680:CDS |
AGATGTTAGTGATTGTCTTC+AGG | 0.414833 | 7_4:+42265587 | Msa1154680:CDS |
TCAATTTCGCTTCGGATTCA+CGG | 0.417220 | 7_4:+42265469 | Msa1154680:CDS |
CTTCGGTGAAGTGAGGGTTT+CGG | 0.431738 | 7_4:-42265086 | None:intergenic |
TTCGGAGATTGAATATTCTT+CGG | 0.434493 | 7_4:-42265103 | None:intergenic |
CAGTAACTTCAATTTCGCTT+CGG | 0.448023 | 7_4:+42265461 | Msa1154680:CDS |
CGCGGTGAAGCCGATGCTGC+TGG | 0.451697 | 7_4:+42265328 | Msa1154680:CDS |
GAGAGGGAAGATTGTGGCAT+TGG | 0.465759 | 7_4:+42266101 | Msa1154680:CDS |
AGTGATTGTCTTCAGGAGAA+TGG | 0.469720 | 7_4:+42265594 | Msa1154680:CDS |
GACGATGACGTGGCTGAGAC+GGG | 0.481472 | 7_4:-42264987 | None:intergenic |
TGAAGTGAGGGTTTCGGTGA+CGG | 0.482948 | 7_4:-42265080 | None:intergenic |
CCTCCATCATGAAGCGGTCC+AGG | 0.486217 | 7_4:-42265172 | None:intergenic |
GACGTGGCTGAGACGGGAAT+CGG | 0.486245 | 7_4:-42264981 | None:intergenic |
GGACGATGACGTGGCTGAGA+CGG | 0.490496 | 7_4:-42264988 | None:intergenic |
AGCCGATGATTCCGGTGAGC+CGG | 0.495688 | 7_4:+42265138 | Msa1154680:CDS |
GCCACGACAATCGGTTGAAT+CGG | 0.506253 | 7_4:-42265637 | None:intergenic |
TGTGTTGAAGATCGCCGATC+CGG | 0.510801 | 7_4:+42265264 | Msa1154680:CDS |
GGTCCAGGTAGTGAAACTTC+CGG | 0.511737 | 7_4:-42265157 | None:intergenic |
TCAACATCAGATTTCTCCAC+TGG | 0.517634 | 7_4:-42265673 | None:intergenic |
GGAATCATCGGCTGTAGCAT+CGG | 0.529309 | 7_4:-42265128 | None:intergenic |
TTCTGTATCGCATCAACCGC+CGG | 0.530389 | 7_4:-42265283 | None:intergenic |
CGACCTAGGTGATGATGCTA+TGG | 0.532394 | 7_4:+42265408 | Msa1154680:CDS |
TCTAGCGAGATTGATTGAAT+CGG | 0.538223 | 7_4:+42265372 | Msa1154680:CDS |
TAGTGAAACTTCCGGCTCAC+CGG | 0.539564 | 7_4:-42265149 | None:intergenic |
TCTCATCGACTGCGGATCAG+CGG | 0.547808 | 7_4:-42266082 | None:intergenic |
TTCCGGCTCACCGGAATCAT+CGG | 0.550605 | 7_4:-42265140 | None:intergenic |
TGTCTTCAGGAGAATGGAGG+CGG | 0.560761 | 7_4:+42265600 | Msa1154680:CDS |
TATCGCATCAACCGCCGGAT+CGG | 0.571028 | 7_4:-42265278 | None:intergenic |
AATATTCTTCGGTGAAGTGA+GGG | 0.571910 | 7_4:-42265092 | None:intergenic |
CATCGACTGCGGATCAGCGG+GGG | 0.573357 | 7_4:-42266079 | None:intergenic |
GCTGATCCGCAGTCGATGAG+AGG | 0.577581 | 7_4:+42266084 | Msa1154680:CDS |
ATCGCTCCTCCATCATGAAG+CGG | 0.578712 | 7_4:-42265178 | None:intergenic |
CTACCTGGACCGCTTCATGA+TGG | 0.579347 | 7_4:+42265169 | Msa1154680:CDS |
AGGACATTCACCAGCAGCAT+CGG | 0.582674 | 7_4:-42265338 | None:intergenic |
GAATATTCTTCGGTGAAGTG+AGG | 0.583973 | 7_4:-42265093 | None:intergenic |
TCCGATTCAACCGATTGTCG+TGG | 0.593468 | 7_4:+42265636 | Msa1154680:CDS |
GAGCCGGAAGTTTCACTACC+TGG | 0.595363 | 7_4:+42265154 | Msa1154680:CDS |
CTGATCCGCAGTCGATGAGA+GGG | 0.602486 | 7_4:+42266085 | Msa1154680:CDS |
ATACAGAAGCTGATTGCTGT+AGG | 0.602783 | 7_4:+42265298 | Msa1154680:CDS |
CTATTTAGGTAGTAAGAATG+TGG | 0.606504 | 7_4:+42265531 | Msa1154680:intron |
GTGTGTAAATGTCACGACCT+AGG | 0.609737 | 7_4:+42265394 | Msa1154680:CDS |
CGAGAGCAGGGACGATGACG+TGG | 0.620227 | 7_4:-42264997 | None:intergenic |
GGCGGAATTGATGGATCCAG+TGG | 0.622504 | 7_4:+42265657 | Msa1154680:CDS |
ATCTTCCCTCTCATCGACTG+CGG | 0.630559 | 7_4:-42266090 | None:intergenic |
GCTCCATAGCATCATCACCT+AGG | 0.633823 | 7_4:-42265411 | None:intergenic |
CCTGGACCGCTTCATGATGG+AGG | 0.634967 | 7_4:+42265172 | Msa1154680:CDS |
GTCGATGAGAGGGAAGATTG+TGG | 0.635888 | 7_4:+42266095 | Msa1154680:CDS |
GTTGAAGATCGCCGATCCGG+CGG | 0.637889 | 7_4:+42265267 | Msa1154680:CDS |
GATTCAACCGATTGTCGTGG+CGG | 0.638327 | 7_4:+42265639 | Msa1154680:CDS |
CAGCATCGGCTTCACCGCGG+AGG | 0.665534 | 7_4:-42265324 | None:intergenic |
TCATCGACTGCGGATCAGCG+GGG | 0.668977 | 7_4:-42266080 | None:intergenic |
ATCGGCGATCTTCAACACAC+CGG | 0.676397 | 7_4:-42265260 | None:intergenic |
GATTGTCTTCAGGAGAATGG+AGG | 0.680465 | 7_4:+42265597 | Msa1154680:CDS |
GAATGTGGTGAATCAAACGA+CGG | 0.729456 | 7_4:+42265546 | Msa1154680:CDS |
CAGCAGCATCGGCTTCACCG+CGG | 0.733179 | 7_4:-42265327 | None:intergenic |
ATTGCTGTAGGTTACCTCCG+CGG | 0.735072 | 7_4:+42265310 | Msa1154680:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTATAACAAAAATAATGC+AGG | + | chr7_4:42265723-42265742 | Msa1154680:intron | 15.0% |
!!! | TTTTATAACAAAAATAATGC+AGG | + | chr7_4:42265723-42265742 | Msa1154680:intron | 15.0% |
!!! | ACTTGTTATGATATCTATTT+AGG | + | chr7_4:42265517-42265536 | Msa1154680:intron | 20.0% |
!!! | ACTTGTTATGATATCTATTT+AGG | + | chr7_4:42265517-42265536 | Msa1154680:intron | 20.0% |
!!! | ATTGTTTGCTTTTGATTGTA+AGG | + | chr7_4:42265494-42265513 | Msa1154680:intron | 25.0% |
! | AAAATAATGCAGGATATAGA+TGG | + | chr7_4:42265733-42265752 | Msa1154680:intron | 25.0% |
!!! | ATTGTTTGCTTTTGATTGTA+AGG | + | chr7_4:42265494-42265513 | Msa1154680:intron | 25.0% |
! | AAAATAATGCAGGATATAGA+TGG | + | chr7_4:42265733-42265752 | Msa1154680:intron | 25.0% |
TTCGGAGATTGAATATTCTT+CGG | - | chr7_4:42265106-42265125 | None:intergenic | 30.0% | |
CTATTTAGGTAGTAAGAATG+TGG | + | chr7_4:42265531-42265550 | Msa1154680:intron | 30.0% | |
ATATGTTGGATGCAAAGTAT+TGG | + | chr7_4:42265878-42265897 | Msa1154680:intron | 30.0% | |
! | TATGTTGGATGCAAAGTATT+GGG | + | chr7_4:42265879-42265898 | Msa1154680:intron | 30.0% |
GGAGATTAGTATGTATAAGA+CGG | + | chr7_4:42265900-42265919 | Msa1154680:intron | 30.0% | |
! | GGAGTTGTTGAAAATTTTGT+TGG | + | chr7_4:42266122-42266141 | Msa1154680:CDS | 30.0% |
! | AAAATTTTGTTGGAGAATGC+TGG | + | chr7_4:42266132-42266151 | Msa1154680:CDS | 30.0% |
TTCGGAGATTGAATATTCTT+CGG | - | chr7_4:42265106-42265125 | None:intergenic | 30.0% | |
CTATTTAGGTAGTAAGAATG+TGG | + | chr7_4:42265531-42265550 | Msa1154680:intron | 30.0% | |
ATATGTTGGATGCAAAGTAT+TGG | + | chr7_4:42265878-42265897 | Msa1154680:intron | 30.0% | |
! | TATGTTGGATGCAAAGTATT+GGG | + | chr7_4:42265879-42265898 | Msa1154680:intron | 30.0% |
GGAGATTAGTATGTATAAGA+CGG | + | chr7_4:42265900-42265919 | Msa1154680:intron | 30.0% | |
! | GGAGTTGTTGAAAATTTTGT+TGG | + | chr7_4:42266122-42266141 | Msa1154680:CDS | 30.0% |
! | AAAATTTTGTTGGAGAATGC+TGG | + | chr7_4:42266132-42266151 | Msa1154680:CDS | 30.0% |
AATATTCTTCGGTGAAGTGA+GGG | - | chr7_4:42265095-42265114 | None:intergenic | 35.0% | |
TCTAGCGAGATTGATTGAAT+CGG | + | chr7_4:42265372-42265391 | Msa1154680:CDS | 35.0% | |
CAGTAACTTCAATTTCGCTT+CGG | + | chr7_4:42265461-42265480 | Msa1154680:CDS | 35.0% | |
AGATGTTAGTGATTGTCTTC+AGG | + | chr7_4:42265587-42265606 | Msa1154680:CDS | 35.0% | |
TAGTATGTATAAGACGGCTT+TGG | + | chr7_4:42265906-42265925 | Msa1154680:intron | 35.0% | |
! | GATGATTTGGAGATTCAGAT+TGG | + | chr7_4:42265979-42265998 | Msa1154680:intron | 35.0% |
! | TTCAGATTGGTAATAAGCTG+AGG | + | chr7_4:42265992-42266011 | Msa1154680:intron | 35.0% |
!!! | GGATGCTTTTTTGGTGTTTA+GGG | + | chr7_4:42266017-42266036 | Msa1154680:intron | 35.0% |
! | CTGTTTTCAGAACTAGTGAA+AGG | + | chr7_4:42266157-42266176 | Msa1154680:CDS | 35.0% |
AATATTCTTCGGTGAAGTGA+GGG | - | chr7_4:42265095-42265114 | None:intergenic | 35.0% | |
TCTAGCGAGATTGATTGAAT+CGG | + | chr7_4:42265372-42265391 | Msa1154680:CDS | 35.0% | |
CAGTAACTTCAATTTCGCTT+CGG | + | chr7_4:42265461-42265480 | Msa1154680:CDS | 35.0% | |
AGATGTTAGTGATTGTCTTC+AGG | + | chr7_4:42265587-42265606 | Msa1154680:CDS | 35.0% | |
TAGTATGTATAAGACGGCTT+TGG | + | chr7_4:42265906-42265925 | Msa1154680:intron | 35.0% | |
! | GATGATTTGGAGATTCAGAT+TGG | + | chr7_4:42265979-42265998 | Msa1154680:intron | 35.0% |
! | TTCAGATTGGTAATAAGCTG+AGG | + | chr7_4:42265992-42266011 | Msa1154680:intron | 35.0% |
!!! | GGATGCTTTTTTGGTGTTTA+GGG | + | chr7_4:42266017-42266036 | Msa1154680:intron | 35.0% |
! | CTGTTTTCAGAACTAGTGAA+AGG | + | chr7_4:42266157-42266176 | Msa1154680:CDS | 35.0% |
AAATCCTCAAAAACGCTTCC+TGG | + | chr7_4:42265023-42265042 | Msa1154680:CDS | 40.0% | |
TTTACACTCATGAGCGAGTT+TGG | - | chr7_4:42265059-42265078 | None:intergenic | 40.0% | |
GAATATTCTTCGGTGAAGTG+AGG | - | chr7_4:42265096-42265115 | None:intergenic | 40.0% | |
ATACAGAAGCTGATTGCTGT+AGG | + | chr7_4:42265298-42265317 | Msa1154680:CDS | 40.0% | |
!! | TGATGATGCTATGGAGCTTT+TGG | + | chr7_4:42265417-42265436 | Msa1154680:CDS | 40.0% |
TCAATTTCGCTTCGGATTCA+CGG | + | chr7_4:42265469-42265488 | Msa1154680:CDS | 40.0% | |
GAATGTGGTGAATCAAACGA+CGG | + | chr7_4:42265546-42265565 | Msa1154680:CDS | 40.0% | |
AGTGATTGTCTTCAGGAGAA+TGG | + | chr7_4:42265594-42265613 | Msa1154680:CDS | 40.0% | |
TCAACATCAGATTTCTCCAC+TGG | - | chr7_4:42265676-42265695 | None:intergenic | 40.0% | |
TCTATGACAGTGTTTGTGCA+AGG | + | chr7_4:42265700-42265719 | Msa1154680:intron | 40.0% | |
TTCGACGGATAAGGATATGT+TGG | + | chr7_4:42265864-42265883 | Msa1154680:intron | 40.0% | |
!! | ATGTATAAGACGGCTTTGGA+AGG | + | chr7_4:42265910-42265929 | Msa1154680:intron | 40.0% |
!! | TGTATAAGACGGCTTTGGAA+GGG | + | chr7_4:42265911-42265930 | Msa1154680:intron | 40.0% |
! | AGATTGGTAATAAGCTGAGG+AGG | + | chr7_4:42265995-42266014 | Msa1154680:intron | 40.0% |
! | GATTGGTAATAAGCTGAGGA+GGG | + | chr7_4:42265996-42266015 | Msa1154680:intron | 40.0% |
!!! | GGGATGCTTTTTTGGTGTTT+AGG | + | chr7_4:42266016-42266035 | Msa1154680:intron | 40.0% |
AAATCCTCAAAAACGCTTCC+TGG | + | chr7_4:42265023-42265042 | Msa1154680:CDS | 40.0% | |
TTTACACTCATGAGCGAGTT+TGG | - | chr7_4:42265059-42265078 | None:intergenic | 40.0% | |
GAATATTCTTCGGTGAAGTG+AGG | - | chr7_4:42265096-42265115 | None:intergenic | 40.0% | |
ATACAGAAGCTGATTGCTGT+AGG | + | chr7_4:42265298-42265317 | Msa1154680:CDS | 40.0% | |
!! | TGATGATGCTATGGAGCTTT+TGG | + | chr7_4:42265417-42265436 | Msa1154680:CDS | 40.0% |
TCAATTTCGCTTCGGATTCA+CGG | + | chr7_4:42265469-42265488 | Msa1154680:CDS | 40.0% | |
GAATGTGGTGAATCAAACGA+CGG | + | chr7_4:42265546-42265565 | Msa1154680:CDS | 40.0% | |
AGTGATTGTCTTCAGGAGAA+TGG | + | chr7_4:42265594-42265613 | Msa1154680:CDS | 40.0% | |
TCAACATCAGATTTCTCCAC+TGG | - | chr7_4:42265676-42265695 | None:intergenic | 40.0% | |
TCTATGACAGTGTTTGTGCA+AGG | + | chr7_4:42265700-42265719 | Msa1154680:intron | 40.0% | |
TTCGACGGATAAGGATATGT+TGG | + | chr7_4:42265864-42265883 | Msa1154680:intron | 40.0% | |
!! | ATGTATAAGACGGCTTTGGA+AGG | + | chr7_4:42265910-42265929 | Msa1154680:intron | 40.0% |
!! | TGTATAAGACGGCTTTGGAA+GGG | + | chr7_4:42265911-42265930 | Msa1154680:intron | 40.0% |
! | AGATTGGTAATAAGCTGAGG+AGG | + | chr7_4:42265995-42266014 | Msa1154680:intron | 40.0% |
! | GATTGGTAATAAGCTGAGGA+GGG | + | chr7_4:42265996-42266015 | Msa1154680:intron | 40.0% |
!!! | GGGATGCTTTTTTGGTGTTT+AGG | + | chr7_4:42266016-42266035 | Msa1154680:intron | 40.0% |
! | TGAGGATTTTCTCGAGAGCA+GGG | - | chr7_4:42265012-42265031 | None:intergenic | 45.0% |
! | TTGAGGATTTTCTCGAGAGC+AGG | - | chr7_4:42265013-42265032 | None:intergenic | 45.0% |
TCTATCTCCTCTCATCAACG+CGG | + | chr7_4:42265231-42265250 | Msa1154680:intron | 45.0% | |
CTCGCTAGAAACTTCGATTC+AGG | - | chr7_4:42265361-42265380 | None:intergenic | 45.0% | |
GTGTGTAAATGTCACGACCT+AGG | + | chr7_4:42265394-42265413 | Msa1154680:CDS | 45.0% | |
GATTGTCTTCAGGAGAATGG+AGG | + | chr7_4:42265597-42265616 | Msa1154680:CDS | 45.0% | |
ATCAATTCCGCCACGACAAT+CGG | - | chr7_4:42265649-42265668 | None:intergenic | 45.0% | |
! | GATGGAGTTTTGCATCCATC+AGG | + | chr7_4:42265751-42265770 | Msa1154680:intron | 45.0% |
GACAGTTGAGACTACGAATC+CGG | + | chr7_4:42265828-42265847 | Msa1154680:intron | 45.0% | |
TTTGCTGGATTCGACGGATA+AGG | + | chr7_4:42265855-42265874 | Msa1154680:intron | 45.0% | |
! | TGAGGATTTTCTCGAGAGCA+GGG | - | chr7_4:42265012-42265031 | None:intergenic | 45.0% |
! | TTGAGGATTTTCTCGAGAGC+AGG | - | chr7_4:42265013-42265032 | None:intergenic | 45.0% |
TCTATCTCCTCTCATCAACG+CGG | + | chr7_4:42265231-42265250 | Msa1154680:intron | 45.0% | |
CTCGCTAGAAACTTCGATTC+AGG | - | chr7_4:42265361-42265380 | None:intergenic | 45.0% | |
GTGTGTAAATGTCACGACCT+AGG | + | chr7_4:42265394-42265413 | Msa1154680:CDS | 45.0% | |
GATTGTCTTCAGGAGAATGG+AGG | + | chr7_4:42265597-42265616 | Msa1154680:CDS | 45.0% | |
ATCAATTCCGCCACGACAAT+CGG | - | chr7_4:42265649-42265668 | None:intergenic | 45.0% | |
! | GATGGAGTTTTGCATCCATC+AGG | + | chr7_4:42265751-42265770 | Msa1154680:intron | 45.0% |
GACAGTTGAGACTACGAATC+CGG | + | chr7_4:42265828-42265847 | Msa1154680:intron | 45.0% | |
TTTGCTGGATTCGACGGATA+AGG | + | chr7_4:42265855-42265874 | Msa1154680:intron | 45.0% | |
!!! | TTCGCCAGGAAGCGTTTTTG+AGG | - | chr7_4:42265030-42265049 | None:intergenic | 50.0% |
TGAAGTGAGGGTTTCGGTGA+CGG | - | chr7_4:42265083-42265102 | None:intergenic | 50.0% | |
CTTCGGTGAAGTGAGGGTTT+CGG | - | chr7_4:42265089-42265108 | None:intergenic | 50.0% | |
! | TCGGCTGTAGCATCGGAATT+CGG | - | chr7_4:42265124-42265143 | None:intergenic | 50.0% |
! | GGAATCATCGGCTGTAGCAT+CGG | - | chr7_4:42265131-42265150 | None:intergenic | 50.0% |
GATGCTACAGCCGATGATTC+CGG | + | chr7_4:42265130-42265149 | Msa1154680:CDS | 50.0% | |
TAGTGAAACTTCCGGCTCAC+CGG | - | chr7_4:42265152-42265171 | None:intergenic | 50.0% | |
GGTCCAGGTAGTGAAACTTC+CGG | - | chr7_4:42265160-42265179 | None:intergenic | 50.0% | |
ATCGCTCCTCCATCATGAAG+CGG | - | chr7_4:42265181-42265200 | None:intergenic | 50.0% | |
ATCGGCGATCTTCAACACAC+CGG | - | chr7_4:42265263-42265282 | None:intergenic | 50.0% | |
TGTGTTGAAGATCGCCGATC+CGG | + | chr7_4:42265264-42265283 | Msa1154680:CDS | 50.0% | |
TTCTGTATCGCATCAACCGC+CGG | - | chr7_4:42265286-42265305 | None:intergenic | 50.0% | |
ATTGCTGTAGGTTACCTCCG+CGG | + | chr7_4:42265310-42265329 | Msa1154680:CDS | 50.0% | |
AGGACATTCACCAGCAGCAT+CGG | - | chr7_4:42265341-42265360 | None:intergenic | 50.0% | |
! | CGACCTAGGTGATGATGCTA+TGG | + | chr7_4:42265408-42265427 | Msa1154680:CDS | 50.0% |
GCTCCATAGCATCATCACCT+AGG | - | chr7_4:42265414-42265433 | None:intergenic | 50.0% | |
TGTCTTCAGGAGAATGGAGG+CGG | + | chr7_4:42265600-42265619 | Msa1154680:CDS | 50.0% | |
TCCGATTCAACCGATTGTCG+TGG | + | chr7_4:42265636-42265655 | Msa1154680:CDS | 50.0% | |
GCCACGACAATCGGTTGAAT+CGG | - | chr7_4:42265640-42265659 | None:intergenic | 50.0% | |
GATTCAACCGATTGTCGTGG+CGG | + | chr7_4:42265639-42265658 | Msa1154680:CDS | 50.0% | |
! | GATTGTCGTGGCGGAATTGA+TGG | + | chr7_4:42265648-42265667 | Msa1154680:CDS | 50.0% |
AGTTGAGACTACGAATCCGG+CGG | + | chr7_4:42265831-42265850 | Msa1154680:intron | 50.0% | |
!! | ATAAGACGGCTTTGGAAGGG+AGG | + | chr7_4:42265914-42265933 | Msa1154680:intron | 50.0% |
CGAGGAGAGGGATGATGATT+TGG | + | chr7_4:42265966-42265985 | Msa1154680:intron | 50.0% | |
!!! | GCTGAGGAGGGATGCTTTTT+TGG | + | chr7_4:42266008-42266027 | Msa1154680:intron | 50.0% |
GTCTATGAAGTCGCCGTCTA+AGG | + | chr7_4:42266053-42266072 | Msa1154680:intron | 50.0% | |
TATGAAGTCGCCGTCTAAGG+AGG | + | chr7_4:42266056-42266075 | Msa1154680:intron | 50.0% | |
! | ATCTTCCCTCTCATCGACTG+CGG | - | chr7_4:42266093-42266112 | None:intergenic | 50.0% |
GTCGATGAGAGGGAAGATTG+TGG | + | chr7_4:42266095-42266114 | Msa1154680:CDS | 50.0% | |
GAGAGGGAAGATTGTGGCAT+TGG | + | chr7_4:42266101-42266120 | Msa1154680:CDS | 50.0% | |
!!! | TTCGCCAGGAAGCGTTTTTG+AGG | - | chr7_4:42265030-42265049 | None:intergenic | 50.0% |
TGAAGTGAGGGTTTCGGTGA+CGG | - | chr7_4:42265083-42265102 | None:intergenic | 50.0% | |
CTTCGGTGAAGTGAGGGTTT+CGG | - | chr7_4:42265089-42265108 | None:intergenic | 50.0% | |
! | TCGGCTGTAGCATCGGAATT+CGG | - | chr7_4:42265124-42265143 | None:intergenic | 50.0% |
! | GGAATCATCGGCTGTAGCAT+CGG | - | chr7_4:42265131-42265150 | None:intergenic | 50.0% |
GATGCTACAGCCGATGATTC+CGG | + | chr7_4:42265130-42265149 | Msa1154680:CDS | 50.0% | |
TAGTGAAACTTCCGGCTCAC+CGG | - | chr7_4:42265152-42265171 | None:intergenic | 50.0% | |
GGTCCAGGTAGTGAAACTTC+CGG | - | chr7_4:42265160-42265179 | None:intergenic | 50.0% | |
ATCGCTCCTCCATCATGAAG+CGG | - | chr7_4:42265181-42265200 | None:intergenic | 50.0% | |
ATCGGCGATCTTCAACACAC+CGG | - | chr7_4:42265263-42265282 | None:intergenic | 50.0% | |
TGTGTTGAAGATCGCCGATC+CGG | + | chr7_4:42265264-42265283 | Msa1154680:CDS | 50.0% | |
TTCTGTATCGCATCAACCGC+CGG | - | chr7_4:42265286-42265305 | None:intergenic | 50.0% | |
ATTGCTGTAGGTTACCTCCG+CGG | + | chr7_4:42265310-42265329 | Msa1154680:CDS | 50.0% | |
AGGACATTCACCAGCAGCAT+CGG | - | chr7_4:42265341-42265360 | None:intergenic | 50.0% | |
! | CGACCTAGGTGATGATGCTA+TGG | + | chr7_4:42265408-42265427 | Msa1154680:CDS | 50.0% |
GCTCCATAGCATCATCACCT+AGG | - | chr7_4:42265414-42265433 | None:intergenic | 50.0% | |
TGTCTTCAGGAGAATGGAGG+CGG | + | chr7_4:42265600-42265619 | Msa1154680:CDS | 50.0% | |
TCCGATTCAACCGATTGTCG+TGG | + | chr7_4:42265636-42265655 | Msa1154680:CDS | 50.0% | |
GCCACGACAATCGGTTGAAT+CGG | - | chr7_4:42265640-42265659 | None:intergenic | 50.0% | |
GATTCAACCGATTGTCGTGG+CGG | + | chr7_4:42265639-42265658 | Msa1154680:CDS | 50.0% | |
! | GATTGTCGTGGCGGAATTGA+TGG | + | chr7_4:42265648-42265667 | Msa1154680:CDS | 50.0% |
AGTTGAGACTACGAATCCGG+CGG | + | chr7_4:42265831-42265850 | Msa1154680:intron | 50.0% | |
!! | ATAAGACGGCTTTGGAAGGG+AGG | + | chr7_4:42265914-42265933 | Msa1154680:intron | 50.0% |
CGAGGAGAGGGATGATGATT+TGG | + | chr7_4:42265966-42265985 | Msa1154680:intron | 50.0% | |
!!! | GCTGAGGAGGGATGCTTTTT+TGG | + | chr7_4:42266008-42266027 | Msa1154680:intron | 50.0% |
GTCTATGAAGTCGCCGTCTA+AGG | + | chr7_4:42266053-42266072 | Msa1154680:intron | 50.0% | |
TATGAAGTCGCCGTCTAAGG+AGG | + | chr7_4:42266056-42266075 | Msa1154680:intron | 50.0% | |
! | ATCTTCCCTCTCATCGACTG+CGG | - | chr7_4:42266093-42266112 | None:intergenic | 50.0% |
GTCGATGAGAGGGAAGATTG+TGG | + | chr7_4:42266095-42266114 | Msa1154680:CDS | 50.0% | |
GAGAGGGAAGATTGTGGCAT+TGG | + | chr7_4:42266101-42266120 | Msa1154680:CDS | 50.0% | |
! | GAGTTTGGCGTGTTTTCGCC+AGG | - | chr7_4:42265044-42265063 | None:intergenic | 55.0% |
TTCCGGCTCACCGGAATCAT+CGG | - | chr7_4:42265143-42265162 | None:intergenic | 55.0% | |
GAGCCGGAAGTTTCACTACC+TGG | + | chr7_4:42265154-42265173 | Msa1154680:CDS | 55.0% | |
CTACCTGGACCGCTTCATGA+TGG | + | chr7_4:42265169-42265188 | Msa1154680:CDS | 55.0% | |
TATCGCATCAACCGCCGGAT+CGG | - | chr7_4:42265281-42265300 | None:intergenic | 55.0% | |
! | GGCGGAATTGATGGATCCAG+TGG | + | chr7_4:42265657-42265676 | Msa1154680:CDS | 55.0% |
TCCATCAGGTACGCCGAGTA+AGG | + | chr7_4:42265765-42265784 | Msa1154680:intron | 55.0% | |
ACCTTACTCGGCGTACCTGA+TGG | - | chr7_4:42265769-42265788 | None:intergenic | 55.0% | |
AGGTACGCCGAGTAAGGTTG+TGG | + | chr7_4:42265771-42265790 | Msa1154680:intron | 55.0% | |
GCCATCGCCACAACCTTACT+CGG | - | chr7_4:42265781-42265800 | None:intergenic | 55.0% | |
GTTGTGGCGATGGCTCATGA+TGG | + | chr7_4:42265787-42265806 | Msa1154680:intron | 55.0% | |
! | TACGAATCCGGCGGATTTGC+TGG | + | chr7_4:42265840-42265859 | Msa1154680:intron | 55.0% |
GTCGAATCCAGCAAATCCGC+CGG | - | chr7_4:42265850-42265869 | None:intergenic | 55.0% | |
!! | GGCGGATTTGCTGGATTCGA+CGG | + | chr7_4:42265849-42265868 | Msa1154680:intron | 55.0% |
!! | ACGGCTTTGGAAGGGAGGAA+AGG | + | chr7_4:42265919-42265938 | Msa1154680:intron | 55.0% |
!! | CGGCTTTGGAAGGGAGGAAA+GGG | + | chr7_4:42265920-42265939 | Msa1154680:intron | 55.0% |
!! | GGCTTTGGAAGGGAGGAAAG+GGG | + | chr7_4:42265921-42265940 | Msa1154680:intron | 55.0% |
! | TCTCATCGACTGCGGATCAG+CGG | - | chr7_4:42266085-42266104 | None:intergenic | 55.0% |
CTGATCCGCAGTCGATGAGA+GGG | + | chr7_4:42266085-42266104 | Msa1154680:CDS | 55.0% | |
! | GAGTTTGGCGTGTTTTCGCC+AGG | - | chr7_4:42265044-42265063 | None:intergenic | 55.0% |
TTCCGGCTCACCGGAATCAT+CGG | - | chr7_4:42265143-42265162 | None:intergenic | 55.0% | |
GAGCCGGAAGTTTCACTACC+TGG | + | chr7_4:42265154-42265173 | Msa1154680:CDS | 55.0% | |
CTACCTGGACCGCTTCATGA+TGG | + | chr7_4:42265169-42265188 | Msa1154680:CDS | 55.0% | |
TATCGCATCAACCGCCGGAT+CGG | - | chr7_4:42265281-42265300 | None:intergenic | 55.0% | |
! | GGCGGAATTGATGGATCCAG+TGG | + | chr7_4:42265657-42265676 | Msa1154680:CDS | 55.0% |
TCCATCAGGTACGCCGAGTA+AGG | + | chr7_4:42265765-42265784 | Msa1154680:intron | 55.0% | |
ACCTTACTCGGCGTACCTGA+TGG | - | chr7_4:42265769-42265788 | None:intergenic | 55.0% | |
AGGTACGCCGAGTAAGGTTG+TGG | + | chr7_4:42265771-42265790 | Msa1154680:intron | 55.0% | |
GCCATCGCCACAACCTTACT+CGG | - | chr7_4:42265781-42265800 | None:intergenic | 55.0% | |
GTTGTGGCGATGGCTCATGA+TGG | + | chr7_4:42265787-42265806 | Msa1154680:intron | 55.0% | |
! | TACGAATCCGGCGGATTTGC+TGG | + | chr7_4:42265840-42265859 | Msa1154680:intron | 55.0% |
GTCGAATCCAGCAAATCCGC+CGG | - | chr7_4:42265850-42265869 | None:intergenic | 55.0% | |
!! | GGCGGATTTGCTGGATTCGA+CGG | + | chr7_4:42265849-42265868 | Msa1154680:intron | 55.0% |
!! | ACGGCTTTGGAAGGGAGGAA+AGG | + | chr7_4:42265919-42265938 | Msa1154680:intron | 55.0% |
!! | CGGCTTTGGAAGGGAGGAAA+GGG | + | chr7_4:42265920-42265939 | Msa1154680:intron | 55.0% |
!! | GGCTTTGGAAGGGAGGAAAG+GGG | + | chr7_4:42265921-42265940 | Msa1154680:intron | 55.0% |
! | TCTCATCGACTGCGGATCAG+CGG | - | chr7_4:42266085-42266104 | None:intergenic | 55.0% |
CTGATCCGCAGTCGATGAGA+GGG | + | chr7_4:42266085-42266104 | Msa1154680:CDS | 55.0% | |
GACGTGGCTGAGACGGGAAT+CGG | - | chr7_4:42264984-42265003 | None:intergenic | 60.0% | |
GACGATGACGTGGCTGAGAC+GGG | - | chr7_4:42264990-42265009 | None:intergenic | 60.0% | |
GGACGATGACGTGGCTGAGA+CGG | - | chr7_4:42264991-42265010 | None:intergenic | 60.0% | |
AGCCGATGATTCCGGTGAGC+CGG | + | chr7_4:42265138-42265157 | Msa1154680:CDS | 60.0% | |
CCTCCATCATGAAGCGGTCC+AGG | - | chr7_4:42265175-42265194 | None:intergenic | 60.0% | |
CCTGGACCGCTTCATGATGG+AGG | + | chr7_4:42265172-42265191 | Msa1154680:CDS | 60.0% | |
GTTGAAGATCGCCGATCCGG+CGG | + | chr7_4:42265267-42265286 | Msa1154680:CDS | 60.0% | |
GCCGAGTAAGGTTGTGGCGA+TGG | + | chr7_4:42265777-42265796 | Msa1154680:intron | 60.0% | |
AGGAAAGGGGAGCTGGTGGA+TGG | + | chr7_4:42265934-42265953 | Msa1154680:intron | 60.0% | |
ATGGAGAGGTGGTCGAGGAG+AGG | + | chr7_4:42265953-42265972 | Msa1154680:intron | 60.0% | |
TGGAGAGGTGGTCGAGGAGA+GGG | + | chr7_4:42265954-42265973 | Msa1154680:intron | 60.0% | |
! | TCATCGACTGCGGATCAGCG+GGG | - | chr7_4:42266083-42266102 | None:intergenic | 60.0% |
! | CTCATCGACTGCGGATCAGC+GGG | - | chr7_4:42266084-42266103 | None:intergenic | 60.0% |
GCTGATCCGCAGTCGATGAG+AGG | + | chr7_4:42266084-42266103 | Msa1154680:CDS | 60.0% | |
GACGTGGCTGAGACGGGAAT+CGG | - | chr7_4:42264984-42265003 | None:intergenic | 60.0% | |
GACGATGACGTGGCTGAGAC+GGG | - | chr7_4:42264990-42265009 | None:intergenic | 60.0% | |
GGACGATGACGTGGCTGAGA+CGG | - | chr7_4:42264991-42265010 | None:intergenic | 60.0% | |
AGCCGATGATTCCGGTGAGC+CGG | + | chr7_4:42265138-42265157 | Msa1154680:CDS | 60.0% | |
CCTCCATCATGAAGCGGTCC+AGG | - | chr7_4:42265175-42265194 | None:intergenic | 60.0% | |
CCTGGACCGCTTCATGATGG+AGG | + | chr7_4:42265172-42265191 | Msa1154680:CDS | 60.0% | |
GTTGAAGATCGCCGATCCGG+CGG | + | chr7_4:42265267-42265286 | Msa1154680:CDS | 60.0% | |
GCCGAGTAAGGTTGTGGCGA+TGG | + | chr7_4:42265777-42265796 | Msa1154680:intron | 60.0% | |
AGGAAAGGGGAGCTGGTGGA+TGG | + | chr7_4:42265934-42265953 | Msa1154680:intron | 60.0% | |
ATGGAGAGGTGGTCGAGGAG+AGG | + | chr7_4:42265953-42265972 | Msa1154680:intron | 60.0% | |
TGGAGAGGTGGTCGAGGAGA+GGG | + | chr7_4:42265954-42265973 | Msa1154680:intron | 60.0% | |
! | TCATCGACTGCGGATCAGCG+GGG | - | chr7_4:42266083-42266102 | None:intergenic | 60.0% |
! | CTCATCGACTGCGGATCAGC+GGG | - | chr7_4:42266084-42266103 | None:intergenic | 60.0% |
GCTGATCCGCAGTCGATGAG+AGG | + | chr7_4:42266084-42266103 | Msa1154680:CDS | 60.0% | |
CGAGAGCAGGGACGATGACG+TGG | - | chr7_4:42265000-42265019 | None:intergenic | 65.0% | |
! | GAGCTCGCCGCGTTGATGAG+AGG | - | chr7_4:42265241-42265260 | None:intergenic | 65.0% |
CTCATCAACGCGGCGAGCTC+CGG | + | chr7_4:42265241-42265260 | Msa1154680:intron | 65.0% | |
!! | CAGCAGCATCGGCTTCACCG+CGG | - | chr7_4:42265330-42265349 | None:intergenic | 65.0% |
GGAAGGGAGGAAAGGGGAGC+TGG | + | chr7_4:42265927-42265946 | Msa1154680:intron | 65.0% | |
AGGGAGGAAAGGGGAGCTGG+TGG | + | chr7_4:42265930-42265949 | Msa1154680:intron | 65.0% | |
! | AGGGGAGCTGGTGGATGGAG+AGG | + | chr7_4:42265939-42265958 | Msa1154680:intron | 65.0% |
! | GGAGCTGGTGGATGGAGAGG+TGG | + | chr7_4:42265942-42265961 | Msa1154680:intron | 65.0% |
GGTGGATGGAGAGGTGGTCG+AGG | + | chr7_4:42265948-42265967 | Msa1154680:intron | 65.0% | |
TCAGCGGGGGCCTCCTTAGA+CGG | - | chr7_4:42266069-42266088 | None:intergenic | 65.0% | |
! | CATCGACTGCGGATCAGCGG+GGG | - | chr7_4:42266082-42266101 | None:intergenic | 65.0% |
CGAGAGCAGGGACGATGACG+TGG | - | chr7_4:42265000-42265019 | None:intergenic | 65.0% | |
! | GAGCTCGCCGCGTTGATGAG+AGG | - | chr7_4:42265241-42265260 | None:intergenic | 65.0% |
CTCATCAACGCGGCGAGCTC+CGG | + | chr7_4:42265241-42265260 | Msa1154680:intron | 65.0% | |
!! | CAGCAGCATCGGCTTCACCG+CGG | - | chr7_4:42265330-42265349 | None:intergenic | 65.0% |
GGAAGGGAGGAAAGGGGAGC+TGG | + | chr7_4:42265927-42265946 | Msa1154680:intron | 65.0% | |
AGGGAGGAAAGGGGAGCTGG+TGG | + | chr7_4:42265930-42265949 | Msa1154680:intron | 65.0% | |
! | AGGGGAGCTGGTGGATGGAG+AGG | + | chr7_4:42265939-42265958 | Msa1154680:intron | 65.0% |
! | GGAGCTGGTGGATGGAGAGG+TGG | + | chr7_4:42265942-42265961 | Msa1154680:intron | 65.0% |
GGTGGATGGAGAGGTGGTCG+AGG | + | chr7_4:42265948-42265967 | Msa1154680:intron | 65.0% | |
TCAGCGGGGGCCTCCTTAGA+CGG | - | chr7_4:42266069-42266088 | None:intergenic | 65.0% | |
! | CATCGACTGCGGATCAGCGG+GGG | - | chr7_4:42266082-42266101 | None:intergenic | 65.0% |
!! | CAGCATCGGCTTCACCGCGG+AGG | - | chr7_4:42265327-42265346 | None:intergenic | 70.0% |
CGCGGTGAAGCCGATGCTGC+TGG | + | chr7_4:42265328-42265347 | Msa1154680:CDS | 70.0% | |
!! | CAGCATCGGCTTCACCGCGG+AGG | - | chr7_4:42265327-42265346 | None:intergenic | 70.0% |
CGCGGTGAAGCCGATGCTGC+TGG | + | chr7_4:42265328-42265347 | Msa1154680:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_4 | gene | 42264965 | 42266182 | 42264965 | ID=Msa1154680;Name=Msa1154680 |
chr7_4 | mRNA | 42264965 | 42266182 | 42264965 | ID=Msa1154680-mRNA-1;Parent=Msa1154680;Name=Msa1154680-mRNA-1;_AED=0.37;_eAED=0.38;_QI=0|0|0|0.5|0|0|4|0|249 |
chr7_4 | exon | 42264965 | 42265203 | 42264965 | ID=Msa1154680-mRNA-1:exon:10377;Parent=Msa1154680-mRNA-1 |
chr7_4 | exon | 42265258 | 42265490 | 42265258 | ID=Msa1154680-mRNA-1:exon:10378;Parent=Msa1154680-mRNA-1 |
chr7_4 | exon | 42265539 | 42265708 | 42265539 | ID=Msa1154680-mRNA-1:exon:10379;Parent=Msa1154680-mRNA-1 |
chr7_4 | exon | 42266075 | 42266182 | 42266075 | ID=Msa1154680-mRNA-1:exon:10380;Parent=Msa1154680-mRNA-1 |
chr7_4 | CDS | 42264965 | 42265203 | 42264965 | ID=Msa1154680-mRNA-1:cds;Parent=Msa1154680-mRNA-1 |
chr7_4 | CDS | 42265258 | 42265490 | 42265258 | ID=Msa1154680-mRNA-1:cds;Parent=Msa1154680-mRNA-1 |
chr7_4 | CDS | 42265539 | 42265708 | 42265539 | ID=Msa1154680-mRNA-1:cds;Parent=Msa1154680-mRNA-1 |
chr7_4 | CDS | 42266075 | 42266182 | 42266075 | ID=Msa1154680-mRNA-1:cds;Parent=Msa1154680-mRNA-1 |
Gene Sequence |
Protein sequence |