AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1309030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1309030 MtrunA17_Chr8g0336451 88.189 254 21 1 18 262 1017 1270 1.01e-150 463
Msa1309030 MtrunA17_Chr7g0233281 78.039 255 45 2 17 262 1132 1384 4.09e-133 416
Msa1309030 MtrunA17_Chr8g0335521 84.242 165 26 0 76 240 1 165 5.76e-98 287
Msa1309030 MtrunA17_Chr8g0335511 82.400 125 20 1 76 198 1 125 2.96e-66 205
Msa1309030 MtrunA17_Chr4g0073751 43.220 236 121 5 31 259 204 433 2.04e-51 182
Msa1309030 MtrunA17_Chr8g0335501 89.610 77 8 0 266 342 188 264 2.90e-41 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1309030 AT3G60240.4 64.961 254 79 2 18 262 1075 1327 3.86e-96 312
Msa1309030 AT3G60240.3 64.961 254 79 2 18 262 1073 1325 4.25e-96 312
Msa1309030 AT3G60240.2 64.961 254 79 2 18 262 1071 1323 4.54e-96 312
Msa1309030 AT5G57870.1 42.017 238 121 6 31 259 217 446 2.30e-49 176
Msa1309030 AT5G57870.2 42.017 238 121 6 31 259 213 442 2.33e-49 176
Msa1309030 AT2G24050.1 39.662 237 128 5 31 259 176 405 3.01e-46 167
Msa1309030 AT1G07320.2 60.000 80 32 0 260 339 183 262 1.03e-27 110
Msa1309030 AT1G07320.1 60.000 80 32 0 260 339 183 262 1.07e-27 110
Msa1309030 AT1G07320.4 60.000 80 32 0 260 339 183 262 1.13e-27 109
Msa1309030 AT1G07320.3 60.000 80 32 0 260 339 183 262 1.13e-27 109
Msa1309030 AT1G62410.1 34.158 202 122 4 55 251 2 197 1.74e-27 107

Find 82 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAACATGAATTTATCTTCT+AGG 0.172827 8_4:+5430823 Msa1309030:CDS
TGCAAGCTAATGAGTTCTAT+TGG 0.311646 8_4:+5430729 Msa1309030:CDS
TTGTTGGCTAGTAGGAATAT+TGG 0.349461 8_4:+5431014 Msa1309030:CDS
TCTTTGTCCACACTCAAATC+AGG 0.358494 8_4:-5430414 None:intergenic
TAACATGCGCCTTCTTGCCT+TGG 0.361754 8_4:-5430580 None:intergenic
AGAAAGTGTTGTTGGCTAGT+AGG 0.371480 8_4:+5431006 Msa1309030:CDS
CAACTCTATACCCCTCTTCC+CGG 0.373387 8_4:-5430148 None:intergenic
AGAACAAGAAGAGGAAAATA+AGG 0.373812 8_4:+5430500 Msa1309030:CDS
TTAGGAAACATCAGATTGAT+TGG 0.380663 8_4:+5430600 Msa1309030:CDS
TAGGGTGAGGTTTATGTTGA+AGG 0.387044 8_4:+5430842 Msa1309030:CDS
TGCCAACTTCTGCTCACATC+TGG 0.388294 8_4:+5430380 Msa1309030:CDS
GGTGACAAAGGGGTTTATTA+CGG 0.392372 8_4:+5430920 Msa1309030:CDS
GCAAGCTAATGAGTTCTATT+GGG 0.393172 8_4:+5430730 Msa1309030:CDS
TTGATTTGAGAAGGAATAGA+TGG 0.397789 8_4:+5430871 Msa1309030:CDS
GATTATTTGAATGGTAGGTA+TGG 0.413472 8_4:+5431122 Msa1309030:CDS
TGTTGGCTAGTAGGAATATT+GGG 0.414394 8_4:+5431015 Msa1309030:CDS
AAGGCAAGAAGGCGCATGTT+AGG 0.418141 8_4:+5430582 Msa1309030:CDS
GAAGGAATAGATGGCAAGTA+AGG 0.420946 8_4:+5430880 Msa1309030:CDS
GCCTCAACATCTTCCTCATC+AGG 0.425779 8_4:-5430702 None:intergenic
ATTATTTGAATGGTAGGTAT+GGG 0.441937 8_4:+5431123 Msa1309030:CDS
CAACATGAATTTATCTTCTA+GGG 0.451244 8_4:+5430824 Msa1309030:CDS
CTTCCTTCTTCTCAGCCTTG+TGG 0.456631 8_4:-5430185 None:intergenic
AAGGAGGAAAGTTGATGAAA+AGG 0.461900 8_4:+5430899 Msa1309030:CDS
ATCCATACGTTCCTTAGTTG+TGG 0.470304 8_4:-5430769 None:intergenic
GCATACACTTCACAAAAGAT+AGG 0.471935 8_4:-5430360 None:intergenic
CATCCCTCTCAAATTCCTCC+TGG 0.490978 8_4:-5430473 None:intergenic
CTGTGGATTATTTGAATGGT+AGG 0.496106 8_4:+5431117 Msa1309030:CDS
GGTTTATTACGGCGATGAAA+AGG 0.497086 8_4:+5430931 Msa1309030:CDS
ATGGAAAGAAATAGCCGTGC+CGG 0.497408 8_4:+5430129 Msa1309030:CDS
AATCTTCGAGAAGGCTCTGA+TGG 0.499796 8_4:+5430335 Msa1309030:CDS
GGTTGATGAGGCCGAGGGTG+AGG 0.499924 8_4:+5430521 Msa1309030:CDS
GATCCACAAGGCTGAGAAGA+AGG 0.500096 8_4:+5430182 Msa1309030:CDS
GTTGATGAAAAGGTGACAAA+GGG 0.501509 8_4:+5430909 Msa1309030:CDS
TGAATTTATCTTCTAGGGTG+AGG 0.503088 8_4:+5430829 Msa1309030:CDS
GGTGCTGTGGATTATTTGAA+TGG 0.506219 8_4:+5431113 Msa1309030:CDS
AGGATGTAATTGATTTGAGA+AGG 0.507541 8_4:+5430862 Msa1309030:CDS
TCCATACGTTCCTTAGTTGT+GGG 0.508568 8_4:-5430768 None:intergenic
GTTATTATTAAACAAATGCC+AGG 0.509500 8_4:+5430455 Msa1309030:CDS
GAAATAGCCGTGCCGGGAAG+AGG 0.510985 8_4:+5430136 Msa1309030:CDS
CAAGCTGTCAAATGAAGAAA+GGG 0.521481 8_4:+5430545 Msa1309030:CDS
GGTGGAGGAGAAAGTGTTGT+TGG 0.521577 8_4:+5430998 Msa1309030:CDS
TCAAGCTGTCAAATGAAGAA+AGG 0.526150 8_4:+5430544 Msa1309030:CDS
GATTGACCATCCCACAACTA+AGG 0.527910 8_4:+5430758 Msa1309030:CDS
AAATAGCCGTGCCGGGAAGA+GGG 0.528414 8_4:+5430137 Msa1309030:CDS
AGCCAGATGTGAGCAGAAGT+TGG 0.530655 8_4:-5430382 None:intergenic
AAATAAGGTTGATGAGGCCG+AGG 0.534130 8_4:+5430515 Msa1309030:CDS
GGAATAGATGGCAAGTAAGG+AGG 0.534393 8_4:+5430883 Msa1309030:CDS
AGAGAAGAACCAAGGCAAGA+AGG 0.535181 8_4:+5430571 Msa1309030:CDS
TTCAAATAATCCACAGCACC+AGG 0.535183 8_4:-5431110 None:intergenic
TCCCACAACTAAGGAACGTA+TGG 0.545798 8_4:+5430767 Msa1309030:CDS
TACGTTCCTTAGTTGTGGGA+TGG 0.546679 8_4:-5430764 None:intergenic
CAAGGCTGAGAAGAAGGAAG+AGG 0.548045 8_4:+5430188 Msa1309030:CDS
TGAGTTGCCTGATTTGAGTG+TGG 0.548592 8_4:+5430407 Msa1309030:CDS
GGCGATGAAAAGGTGGGGAT+CGG 0.548811 8_4:+5430941 Msa1309030:CDS
GGATGAACAAGAACAAGAAG+AGG 0.549555 8_4:+5430491 Msa1309030:CDS
AGTTGATGAAAAGGTGACAA+AGG 0.551762 8_4:+5430908 Msa1309030:CDS
TGGAAAGAAATAGCCGTGCC+GGG 0.553316 8_4:+5430130 Msa1309030:CDS
TTATTACGGCGATGAAAAGG+TGG 0.566716 8_4:+5430934 Msa1309030:CDS
AGAAGAAAATGTTGACAGAG+AGG 0.570187 8_4:+5430634 Msa1309030:CDS
TCATACAAATTCAATGTCCT+CGG 0.570589 8_4:-5431056 None:intergenic
TGACAGCTTGACCTCACCCT+CGG 0.585166 8_4:-5430532 None:intergenic
TATTACGGCGATGAAAAGGT+GGG 0.591768 8_4:+5430935 Msa1309030:CDS
TCCTGATGAGGAAGATGTTG+AGG 0.592876 8_4:+5430701 Msa1309030:CDS
AATAGCCGTGCCGGGAAGAG+GGG 0.601813 8_4:+5430138 Msa1309030:CDS
TTATTTGAATGGTAGGTATG+GGG 0.606640 8_4:+5431124 Msa1309030:CDS
CGTCTCACAAATCTTCGAGA+AGG 0.610020 8_4:+5430326 Msa1309030:CDS
CAAGCTAATGAGTTCTATTG+GGG 0.615645 8_4:+5430731 Msa1309030:CDS
GAGTGTATAAAGAAGTTACT+AGG 0.621779 8_4:+5430666 Msa1309030:CDS
AAGGGAGCAGAGAAGAACCA+AGG 0.628760 8_4:+5430563 Msa1309030:CDS
AGAAGGAAGAGGCAAAACAG+AGG 0.635083 8_4:+5430199 Msa1309030:CDS
TTGATGAAAAGGTGACAAAG+GGG 0.641511 8_4:+5430910 Msa1309030:CDS
ATTACGGCGATGAAAAGGTG+GGG 0.642490 8_4:+5430936 Msa1309030:CDS
AGAGGAAAATAAGGTTGATG+AGG 0.644395 8_4:+5430509 Msa1309030:CDS
AGAAGTCTATCGAAATTCTG+AGG 0.644859 8_4:-5430252 None:intergenic
AATGCCAGGAGGAATTTGAG+AGG 0.647494 8_4:+5430469 Msa1309030:CDS
ATGCCAGGAGGAATTTGAGA+GGG 0.649939 8_4:+5430470 Msa1309030:CDS
TCAATGTCACGATCCTGATG+AGG 0.650679 8_4:+5430689 Msa1309030:CDS
CTATACCCCTCTTCCCGGCA+CGG 0.657996 8_4:-5430143 None:intergenic
GTATTATTTGATGATCCACA+AGG 0.660379 8_4:+5430170 Msa1309030:CDS
ATTATTAAACAAATGCCAGG+AGG 0.684132 8_4:+5430458 Msa1309030:CDS
AATAAGGTTGATGAGGCCGA+GGG 0.692298 8_4:+5430516 Msa1309030:CDS
GACAATGAGATCACTCTCAG+TGG 0.693996 8_4:+5430300 Msa1309030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAAAAGATAATTTTTAGA+AGG + chr8_4:5430433-5430452 Msa1309030:CDS 15.0%
!!! AAGAAAAGATAATTTTTAGA+AGG + chr8_4:5430433-5430452 Msa1309030:CDS 15.0%
! GTTATTATTAAACAAATGCC+AGG + chr8_4:5430455-5430474 Msa1309030:CDS 25.0%
!!! GTATGGATGTATATTTTGAA+AGG + chr8_4:5430784-5430803 Msa1309030:CDS 25.0%
! ACAACATGAATTTATCTTCT+AGG + chr8_4:5430823-5430842 Msa1309030:CDS 25.0%
! CAACATGAATTTATCTTCTA+GGG + chr8_4:5430824-5430843 Msa1309030:CDS 25.0%
! ATTATTTGAATGGTAGGTAT+GGG + chr8_4:5431123-5431142 Msa1309030:CDS 25.0%
! GTTATTATTAAACAAATGCC+AGG + chr8_4:5430455-5430474 Msa1309030:CDS 25.0%
!!! GTATGGATGTATATTTTGAA+AGG + chr8_4:5430784-5430803 Msa1309030:CDS 25.0%
! ACAACATGAATTTATCTTCT+AGG + chr8_4:5430823-5430842 Msa1309030:CDS 25.0%
! CAACATGAATTTATCTTCTA+GGG + chr8_4:5430824-5430843 Msa1309030:CDS 25.0%
! ATTATTTGAATGGTAGGTAT+GGG + chr8_4:5431123-5431142 Msa1309030:CDS 25.0%
! GTATTATTTGATGATCCACA+AGG + chr8_4:5430170-5430189 Msa1309030:CDS 30.0%
ATTATTAAACAAATGCCAGG+AGG + chr8_4:5430458-5430477 Msa1309030:CDS 30.0%
AGAACAAGAAGAGGAAAATA+AGG + chr8_4:5430500-5430519 Msa1309030:CDS 30.0%
TTAGGAAACATCAGATTGAT+TGG + chr8_4:5430600-5430619 Msa1309030:CDS 30.0%
GAGTGTATAAAGAAGTTACT+AGG + chr8_4:5430666-5430685 Msa1309030:CDS 30.0%
!! AGGATGTAATTGATTTGAGA+AGG + chr8_4:5430862-5430881 Msa1309030:CDS 30.0%
! TTGATTTGAGAAGGAATAGA+TGG + chr8_4:5430871-5430890 Msa1309030:CDS 30.0%
!!! GAAAGTGACCTTTTTTATGA+TGG + chr8_4:5430974-5430993 Msa1309030:CDS 30.0%
TCATACAAATTCAATGTCCT+CGG - chr8_4:5431059-5431078 None:intergenic 30.0%
!!! GATAAGATTGTTTTTACTCC+TGG + chr8_4:5431092-5431111 Msa1309030:CDS 30.0%
GATTATTTGAATGGTAGGTA+TGG + chr8_4:5431122-5431141 Msa1309030:CDS 30.0%
TTATTTGAATGGTAGGTATG+GGG + chr8_4:5431124-5431143 Msa1309030:CDS 30.0%
! GTATTATTTGATGATCCACA+AGG + chr8_4:5430170-5430189 Msa1309030:CDS 30.0%
ATTATTAAACAAATGCCAGG+AGG + chr8_4:5430458-5430477 Msa1309030:CDS 30.0%
AGAACAAGAAGAGGAAAATA+AGG + chr8_4:5430500-5430519 Msa1309030:CDS 30.0%
TTAGGAAACATCAGATTGAT+TGG + chr8_4:5430600-5430619 Msa1309030:CDS 30.0%
GAGTGTATAAAGAAGTTACT+AGG + chr8_4:5430666-5430685 Msa1309030:CDS 30.0%
!! AGGATGTAATTGATTTGAGA+AGG + chr8_4:5430862-5430881 Msa1309030:CDS 30.0%
! TTGATTTGAGAAGGAATAGA+TGG + chr8_4:5430871-5430890 Msa1309030:CDS 30.0%
!!! GAAAGTGACCTTTTTTATGA+TGG + chr8_4:5430974-5430993 Msa1309030:CDS 30.0%
TCATACAAATTCAATGTCCT+CGG - chr8_4:5431059-5431078 None:intergenic 30.0%
!!! GATAAGATTGTTTTTACTCC+TGG + chr8_4:5431092-5431111 Msa1309030:CDS 30.0%
GATTATTTGAATGGTAGGTA+TGG + chr8_4:5431122-5431141 Msa1309030:CDS 30.0%
TTATTTGAATGGTAGGTATG+GGG + chr8_4:5431124-5431143 Msa1309030:CDS 30.0%
AGAAGTCTATCGAAATTCTG+AGG - chr8_4:5430255-5430274 None:intergenic 35.0%
GCATACACTTCACAAAAGAT+AGG - chr8_4:5430363-5430382 None:intergenic 35.0%
!! AGAGGAAAATAAGGTTGATG+AGG + chr8_4:5430509-5430528 Msa1309030:CDS 35.0%
TCAAGCTGTCAAATGAAGAA+AGG + chr8_4:5430544-5430563 Msa1309030:CDS 35.0%
CAAGCTGTCAAATGAAGAAA+GGG + chr8_4:5430545-5430564 Msa1309030:CDS 35.0%
AGAAGAAAATGTTGACAGAG+AGG + chr8_4:5430634-5430653 Msa1309030:CDS 35.0%
TGCAAGCTAATGAGTTCTAT+TGG + chr8_4:5430729-5430748 Msa1309030:CDS 35.0%
GCAAGCTAATGAGTTCTATT+GGG + chr8_4:5430730-5430749 Msa1309030:CDS 35.0%
CAAGCTAATGAGTTCTATTG+GGG + chr8_4:5430731-5430750 Msa1309030:CDS 35.0%
!! TGAATTTATCTTCTAGGGTG+AGG + chr8_4:5430829-5430848 Msa1309030:CDS 35.0%
!! AAGGAGGAAAGTTGATGAAA+AGG + chr8_4:5430899-5430918 Msa1309030:CDS 35.0%
!! AGTTGATGAAAAGGTGACAA+AGG + chr8_4:5430908-5430927 Msa1309030:CDS 35.0%
! GTTGATGAAAAGGTGACAAA+GGG + chr8_4:5430909-5430928 Msa1309030:CDS 35.0%
TTGATGAAAAGGTGACAAAG+GGG + chr8_4:5430910-5430929 Msa1309030:CDS 35.0%
! AAAAAGGTCACTTTCTTCGT+CGG - chr8_4:5430969-5430988 None:intergenic 35.0%
!!! AGTGACCTTTTTTATGATGG+AGG + chr8_4:5430977-5430996 Msa1309030:CDS 35.0%
! TTGTTGGCTAGTAGGAATAT+TGG + chr8_4:5431014-5431033 Msa1309030:CDS 35.0%
! TGTTGGCTAGTAGGAATATT+GGG + chr8_4:5431015-5431034 Msa1309030:CDS 35.0%
! CTGTGGATTATTTGAATGGT+AGG + chr8_4:5431117-5431136 Msa1309030:CDS 35.0%
AGAAGTCTATCGAAATTCTG+AGG - chr8_4:5430255-5430274 None:intergenic 35.0%
GCATACACTTCACAAAAGAT+AGG - chr8_4:5430363-5430382 None:intergenic 35.0%
!! AGAGGAAAATAAGGTTGATG+AGG + chr8_4:5430509-5430528 Msa1309030:CDS 35.0%
TCAAGCTGTCAAATGAAGAA+AGG + chr8_4:5430544-5430563 Msa1309030:CDS 35.0%
CAAGCTGTCAAATGAAGAAA+GGG + chr8_4:5430545-5430564 Msa1309030:CDS 35.0%
AGAAGAAAATGTTGACAGAG+AGG + chr8_4:5430634-5430653 Msa1309030:CDS 35.0%
TGCAAGCTAATGAGTTCTAT+TGG + chr8_4:5430729-5430748 Msa1309030:CDS 35.0%
GCAAGCTAATGAGTTCTATT+GGG + chr8_4:5430730-5430749 Msa1309030:CDS 35.0%
CAAGCTAATGAGTTCTATTG+GGG + chr8_4:5430731-5430750 Msa1309030:CDS 35.0%
!! TGAATTTATCTTCTAGGGTG+AGG + chr8_4:5430829-5430848 Msa1309030:CDS 35.0%
!! AAGGAGGAAAGTTGATGAAA+AGG + chr8_4:5430899-5430918 Msa1309030:CDS 35.0%
!! AGTTGATGAAAAGGTGACAA+AGG + chr8_4:5430908-5430927 Msa1309030:CDS 35.0%
! GTTGATGAAAAGGTGACAAA+GGG + chr8_4:5430909-5430928 Msa1309030:CDS 35.0%
TTGATGAAAAGGTGACAAAG+GGG + chr8_4:5430910-5430929 Msa1309030:CDS 35.0%
! AAAAAGGTCACTTTCTTCGT+CGG - chr8_4:5430969-5430988 None:intergenic 35.0%
!!! AGTGACCTTTTTTATGATGG+AGG + chr8_4:5430977-5430996 Msa1309030:CDS 35.0%
! TTGTTGGCTAGTAGGAATAT+TGG + chr8_4:5431014-5431033 Msa1309030:CDS 35.0%
! TGTTGGCTAGTAGGAATATT+GGG + chr8_4:5431015-5431034 Msa1309030:CDS 35.0%
! CTGTGGATTATTTGAATGGT+AGG + chr8_4:5431117-5431136 Msa1309030:CDS 35.0%
TCTTTGTCCACACTCAAATC+AGG - chr8_4:5430417-5430436 None:intergenic 40.0%
GGATGAACAAGAACAAGAAG+AGG + chr8_4:5430491-5430510 Msa1309030:CDS 40.0%
TCCATACGTTCCTTAGTTGT+GGG - chr8_4:5430771-5430790 None:intergenic 40.0%
ATCCATACGTTCCTTAGTTG+TGG - chr8_4:5430772-5430791 None:intergenic 40.0%
TAGGGTGAGGTTTATGTTGA+AGG + chr8_4:5430842-5430861 Msa1309030:CDS 40.0%
GAAGGAATAGATGGCAAGTA+AGG + chr8_4:5430880-5430899 Msa1309030:CDS 40.0%
GGTGACAAAGGGGTTTATTA+CGG + chr8_4:5430920-5430939 Msa1309030:CDS 40.0%
GGTTTATTACGGCGATGAAA+AGG + chr8_4:5430931-5430950 Msa1309030:CDS 40.0%
TTATTACGGCGATGAAAAGG+TGG + chr8_4:5430934-5430953 Msa1309030:CDS 40.0%
TATTACGGCGATGAAAAGGT+GGG + chr8_4:5430935-5430954 Msa1309030:CDS 40.0%
!!! GACCTTTTTTATGATGGAGG+TGG + chr8_4:5430980-5430999 Msa1309030:CDS 40.0%
CTCCACCTCCATCATAAAAA+AGG - chr8_4:5430985-5431004 None:intergenic 40.0%
!!! CTTTTTTATGATGGAGGTGG+AGG + chr8_4:5430983-5431002 Msa1309030:CDS 40.0%
!! AGAAAGTGTTGTTGGCTAGT+AGG + chr8_4:5431006-5431025 Msa1309030:CDS 40.0%
TTCAAATAATCCACAGCACC+AGG - chr8_4:5431113-5431132 None:intergenic 40.0%
! GGTGCTGTGGATTATTTGAA+TGG + chr8_4:5431113-5431132 Msa1309030:CDS 40.0%
TCTTTGTCCACACTCAAATC+AGG - chr8_4:5430417-5430436 None:intergenic 40.0%
GGATGAACAAGAACAAGAAG+AGG + chr8_4:5430491-5430510 Msa1309030:CDS 40.0%
TCCATACGTTCCTTAGTTGT+GGG - chr8_4:5430771-5430790 None:intergenic 40.0%
ATCCATACGTTCCTTAGTTG+TGG - chr8_4:5430772-5430791 None:intergenic 40.0%
TAGGGTGAGGTTTATGTTGA+AGG + chr8_4:5430842-5430861 Msa1309030:CDS 40.0%
GAAGGAATAGATGGCAAGTA+AGG + chr8_4:5430880-5430899 Msa1309030:CDS 40.0%
GGTGACAAAGGGGTTTATTA+CGG + chr8_4:5430920-5430939 Msa1309030:CDS 40.0%
GGTTTATTACGGCGATGAAA+AGG + chr8_4:5430931-5430950 Msa1309030:CDS 40.0%
TTATTACGGCGATGAAAAGG+TGG + chr8_4:5430934-5430953 Msa1309030:CDS 40.0%
TATTACGGCGATGAAAAGGT+GGG + chr8_4:5430935-5430954 Msa1309030:CDS 40.0%
!!! GACCTTTTTTATGATGGAGG+TGG + chr8_4:5430980-5430999 Msa1309030:CDS 40.0%
CTCCACCTCCATCATAAAAA+AGG - chr8_4:5430985-5431004 None:intergenic 40.0%
!!! CTTTTTTATGATGGAGGTGG+AGG + chr8_4:5430983-5431002 Msa1309030:CDS 40.0%
!! AGAAAGTGTTGTTGGCTAGT+AGG + chr8_4:5431006-5431025 Msa1309030:CDS 40.0%
TTCAAATAATCCACAGCACC+AGG - chr8_4:5431113-5431132 None:intergenic 40.0%
! GGTGCTGTGGATTATTTGAA+TGG + chr8_4:5431113-5431132 Msa1309030:CDS 40.0%
ATGGAAAGAAATAGCCGTGC+CGG + chr8_4:5430129-5430148 Msa1309030:CDS 45.0%
AGAAGGAAGAGGCAAAACAG+AGG + chr8_4:5430199-5430218 Msa1309030:CDS 45.0%
GACAATGAGATCACTCTCAG+TGG + chr8_4:5430300-5430319 Msa1309030:CDS 45.0%
CGTCTCACAAATCTTCGAGA+AGG + chr8_4:5430326-5430345 Msa1309030:CDS 45.0%
! AATCTTCGAGAAGGCTCTGA+TGG + chr8_4:5430335-5430354 Msa1309030:CDS 45.0%
! TGAGTTGCCTGATTTGAGTG+TGG + chr8_4:5430407-5430426 Msa1309030:CDS 45.0%
AATGCCAGGAGGAATTTGAG+AGG + chr8_4:5430469-5430488 Msa1309030:CDS 45.0%
ATGCCAGGAGGAATTTGAGA+GGG + chr8_4:5430470-5430489 Msa1309030:CDS 45.0%
!! AAATAAGGTTGATGAGGCCG+AGG + chr8_4:5430515-5430534 Msa1309030:CDS 45.0%
!! AATAAGGTTGATGAGGCCGA+GGG + chr8_4:5430516-5430535 Msa1309030:CDS 45.0%
AGAGAAGAACCAAGGCAAGA+AGG + chr8_4:5430571-5430590 Msa1309030:CDS 45.0%
TCAATGTCACGATCCTGATG+AGG + chr8_4:5430689-5430708 Msa1309030:CDS 45.0%
TCCTGATGAGGAAGATGTTG+AGG + chr8_4:5430701-5430720 Msa1309030:CDS 45.0%
GATTGACCATCCCACAACTA+AGG + chr8_4:5430758-5430777 Msa1309030:CDS 45.0%
TACGTTCCTTAGTTGTGGGA+TGG - chr8_4:5430767-5430786 None:intergenic 45.0%
TCCCACAACTAAGGAACGTA+TGG + chr8_4:5430767-5430786 Msa1309030:CDS 45.0%
GGAATAGATGGCAAGTAAGG+AGG + chr8_4:5430883-5430902 Msa1309030:CDS 45.0%
ATTACGGCGATGAAAAGGTG+GGG + chr8_4:5430936-5430955 Msa1309030:CDS 45.0%
!! TGTTTTTACTCCTGGTGCTG+TGG + chr8_4:5431100-5431119 Msa1309030:CDS 45.0%
ATGGAAAGAAATAGCCGTGC+CGG + chr8_4:5430129-5430148 Msa1309030:CDS 45.0%
AGAAGGAAGAGGCAAAACAG+AGG + chr8_4:5430199-5430218 Msa1309030:CDS 45.0%
GACAATGAGATCACTCTCAG+TGG + chr8_4:5430300-5430319 Msa1309030:CDS 45.0%
CGTCTCACAAATCTTCGAGA+AGG + chr8_4:5430326-5430345 Msa1309030:CDS 45.0%
! AATCTTCGAGAAGGCTCTGA+TGG + chr8_4:5430335-5430354 Msa1309030:CDS 45.0%
! TGAGTTGCCTGATTTGAGTG+TGG + chr8_4:5430407-5430426 Msa1309030:CDS 45.0%
AATGCCAGGAGGAATTTGAG+AGG + chr8_4:5430469-5430488 Msa1309030:CDS 45.0%
ATGCCAGGAGGAATTTGAGA+GGG + chr8_4:5430470-5430489 Msa1309030:CDS 45.0%
!! AAATAAGGTTGATGAGGCCG+AGG + chr8_4:5430515-5430534 Msa1309030:CDS 45.0%
!! AATAAGGTTGATGAGGCCGA+GGG + chr8_4:5430516-5430535 Msa1309030:CDS 45.0%
AGAGAAGAACCAAGGCAAGA+AGG + chr8_4:5430571-5430590 Msa1309030:CDS 45.0%
TCAATGTCACGATCCTGATG+AGG + chr8_4:5430689-5430708 Msa1309030:CDS 45.0%
TCCTGATGAGGAAGATGTTG+AGG + chr8_4:5430701-5430720 Msa1309030:CDS 45.0%
GATTGACCATCCCACAACTA+AGG + chr8_4:5430758-5430777 Msa1309030:CDS 45.0%
TACGTTCCTTAGTTGTGGGA+TGG - chr8_4:5430767-5430786 None:intergenic 45.0%
TCCCACAACTAAGGAACGTA+TGG + chr8_4:5430767-5430786 Msa1309030:CDS 45.0%
GGAATAGATGGCAAGTAAGG+AGG + chr8_4:5430883-5430902 Msa1309030:CDS 45.0%
ATTACGGCGATGAAAAGGTG+GGG + chr8_4:5430936-5430955 Msa1309030:CDS 45.0%
!! TGTTTTTACTCCTGGTGCTG+TGG + chr8_4:5431100-5431119 Msa1309030:CDS 45.0%
TGGAAAGAAATAGCCGTGCC+GGG + chr8_4:5430130-5430149 Msa1309030:CDS 50.0%
CAACTCTATACCCCTCTTCC+CGG - chr8_4:5430151-5430170 None:intergenic 50.0%
GATCCACAAGGCTGAGAAGA+AGG + chr8_4:5430182-5430201 Msa1309030:CDS 50.0%
CTTCCTTCTTCTCAGCCTTG+TGG - chr8_4:5430188-5430207 None:intergenic 50.0%
CAAGGCTGAGAAGAAGGAAG+AGG + chr8_4:5430188-5430207 Msa1309030:CDS 50.0%
TGCCAACTTCTGCTCACATC+TGG + chr8_4:5430380-5430399 Msa1309030:CDS 50.0%
AGCCAGATGTGAGCAGAAGT+TGG - chr8_4:5430385-5430404 None:intergenic 50.0%
CATCCCTCTCAAATTCCTCC+TGG - chr8_4:5430476-5430495 None:intergenic 50.0%
AAGGGAGCAGAGAAGAACCA+AGG + chr8_4:5430563-5430582 Msa1309030:CDS 50.0%
TAACATGCGCCTTCTTGCCT+TGG - chr8_4:5430583-5430602 None:intergenic 50.0%
! AAGGCAAGAAGGCGCATGTT+AGG + chr8_4:5430582-5430601 Msa1309030:CDS 50.0%
GCCTCAACATCTTCCTCATC+AGG - chr8_4:5430705-5430724 None:intergenic 50.0%
!! GGTGGAGGAGAAAGTGTTGT+TGG + chr8_4:5430998-5431017 Msa1309030:CDS 50.0%
!! CGTTGAAGATTTTGACGCCG+AGG + chr8_4:5431039-5431058 Msa1309030:CDS 50.0%
TGGAAAGAAATAGCCGTGCC+GGG + chr8_4:5430130-5430149 Msa1309030:CDS 50.0%
CAACTCTATACCCCTCTTCC+CGG - chr8_4:5430151-5430170 None:intergenic 50.0%
GATCCACAAGGCTGAGAAGA+AGG + chr8_4:5430182-5430201 Msa1309030:CDS 50.0%
CTTCCTTCTTCTCAGCCTTG+TGG - chr8_4:5430188-5430207 None:intergenic 50.0%
CAAGGCTGAGAAGAAGGAAG+AGG + chr8_4:5430188-5430207 Msa1309030:CDS 50.0%
TGCCAACTTCTGCTCACATC+TGG + chr8_4:5430380-5430399 Msa1309030:CDS 50.0%
AGCCAGATGTGAGCAGAAGT+TGG - chr8_4:5430385-5430404 None:intergenic 50.0%
CATCCCTCTCAAATTCCTCC+TGG - chr8_4:5430476-5430495 None:intergenic 50.0%
AAGGGAGCAGAGAAGAACCA+AGG + chr8_4:5430563-5430582 Msa1309030:CDS 50.0%
TAACATGCGCCTTCTTGCCT+TGG - chr8_4:5430583-5430602 None:intergenic 50.0%
! AAGGCAAGAAGGCGCATGTT+AGG + chr8_4:5430582-5430601 Msa1309030:CDS 50.0%
GCCTCAACATCTTCCTCATC+AGG - chr8_4:5430705-5430724 None:intergenic 50.0%
!! GGTGGAGGAGAAAGTGTTGT+TGG + chr8_4:5430998-5431017 Msa1309030:CDS 50.0%
!! CGTTGAAGATTTTGACGCCG+AGG + chr8_4:5431039-5431058 Msa1309030:CDS 50.0%
AAATAGCCGTGCCGGGAAGA+GGG + chr8_4:5430137-5430156 Msa1309030:CDS 55.0%
TGACAGCTTGACCTCACCCT+CGG - chr8_4:5430535-5430554 None:intergenic 55.0%
GGCGATGAAAAGGTGGGGAT+CGG + chr8_4:5430941-5430960 Msa1309030:CDS 55.0%
AAATAGCCGTGCCGGGAAGA+GGG + chr8_4:5430137-5430156 Msa1309030:CDS 55.0%
TGACAGCTTGACCTCACCCT+CGG - chr8_4:5430535-5430554 None:intergenic 55.0%
GGCGATGAAAAGGTGGGGAT+CGG + chr8_4:5430941-5430960 Msa1309030:CDS 55.0%
GAAATAGCCGTGCCGGGAAG+AGG + chr8_4:5430136-5430155 Msa1309030:CDS 60.0%
AATAGCCGTGCCGGGAAGAG+GGG + chr8_4:5430138-5430157 Msa1309030:CDS 60.0%
CTATACCCCTCTTCCCGGCA+CGG - chr8_4:5430146-5430165 None:intergenic 60.0%
GAAATAGCCGTGCCGGGAAG+AGG + chr8_4:5430136-5430155 Msa1309030:CDS 60.0%
AATAGCCGTGCCGGGAAGAG+GGG + chr8_4:5430138-5430157 Msa1309030:CDS 60.0%
CTATACCCCTCTTCCCGGCA+CGG - chr8_4:5430146-5430165 None:intergenic 60.0%
!! GGTTGATGAGGCCGAGGGTG+AGG + chr8_4:5430521-5430540 Msa1309030:CDS 65.0%
!! GGTTGATGAGGCCGAGGGTG+AGG + chr8_4:5430521-5430540 Msa1309030:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 5430129 5431157 5430129 ID=Msa1309030;Name=Msa1309030
chr8_4 mRNA 5430129 5431157 5430129 ID=Msa1309030-mRNA-1;Parent=Msa1309030;Name=Msa1309030-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|-1|0|1|-1|1|1|0|342
chr8_4 exon 5430129 5431157 5430129 ID=Msa1309030-mRNA-1:exon:1741;Parent=Msa1309030-mRNA-1
chr8_4 CDS 5430129 5431157 5430129 ID=Msa1309030-mRNA-1:cds;Parent=Msa1309030-mRNA-1
Gene Sequence

>Msa1309030

ATGGAAAGAAATAGCCGTGCCGGGAAGAGGGGTATAGAGTTGTATTATTTGATGATCCACAAGGCTGAGAAGAAGGAAGAGGCAAAACAGAGGCAACTGAGAGCTATCTTGAACAAACTAACTCCTCAGAATTTCGATAGACTTCTTGAACAAGTAAAAGCAGTTAATATTGACAATGAGATCACTCTCAGTGGTGTCGTCTCACAAATCTTCGAGAAGGCTCTGATGGAACCTATCTTTTGTGAAGTGTATGCCAACTTCTGCTCACATCTGGCTTCTGAGTTGCCTGATTTGAGTGTGGACAAAGAAAAGATAATTTTTAGAAGGTTATTATTAAACAAATGCCAGGAGGAATTTGAGAGGGATGAACAAGAACAAGAAGAGGAAAATAAGGTTGATGAGGCCGAGGGTGAGGTCAAGCTGTCAAATGAAGAAAGGGAGCAGAGAAGAACCAAGGCAAGAAGGCGCATGTTAGGAAACATCAGATTGATTGGAGAACTATATAAGAAGAAAATGTTGACAGAGAGGATAATGCACGAGTGTATAAAGAAGTTACTAGGTCAATGTCACGATCCTGATGAGGAAGATGTTGAGGCTATGTGCAAGCTAATGAGTTCTATTGGGGAGATGATTGACCATCCCACAACTAAGGAACGTATGGATGTATATTTTGAAAGGTTGAAAATATTATCAAACAACATGAATTTATCTTCTAGGGTGAGGTTTATGTTGAAGGATGTAATTGATTTGAGAAGGAATAGATGGCAAGTAAGGAGGAAAGTTGATGAAAAGGTGACAAAGGGGTTTATTACGGCGATGAAAAGGTGGGGATCGGATCCGACGAAGAAAGTGACCTTTTTTATGATGGAGGTGGAGGAGAAAGTGTTGTTGGCTAGTAGGAATATTGGGACGTTGAAGATTTTGACGCCGAGGACATTGAATTTGTATGATGTTTTGAATGCTGATAAGATTGTTTTTACTCCTGGTGCTGTGGATTATTTGAATGGTAGGTATGGGGATATTGAATAA

Protein sequence

>Msa1309030

MERNSRAGKRGIELYYLMIHKAEKKEEAKQRQLRAILNKLTPQNFDRLLEQVKAVNIDNEITLSGVVSQIFEKALMEPIFCEVYANFCSHLASELPDLSVDKEKIIFRRLLLNKCQEEFERDEQEQEEENKVDEAEGEVKLSNEEREQRRTKARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQCHDPDEEDVEAMCKLMSSIGEMIDHPTTKERMDVYFERLKILSNNMNLSSRVRFMLKDVIDLRRNRWQVRRKVDEKVTKGFITAMKRWGSDPTKKVTFFMMEVEEKVLLASRNIGTLKILTPRTLNLYDVLNADKIVFTPGAVDYLNGRYGDIE*