Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550020 | XP_003606893.1 | 97.288 | 885 | 7 | 1 | 1 | 868 | 1 | 885 | 0.0 | 1751 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550020 | sp|Q0WW26|COPG_ARATH | 83.540 | 887 | 126 | 3 | 1 | 868 | 1 | 886 | 0.0 | 1522 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550020 | G7JG50 | 97.288 | 885 | 7 | 1 | 1 | 868 | 1 | 885 | 0.0 | 1751 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001800 | Msa0550020 | 0.803843 | 2.872237e-49 | -8.615850e-47 |
| Msa0047000 | Msa0550020 | 0.833651 | 4.718726e-56 | -8.615850e-47 |
| Msa0140880 | Msa0550020 | 0.826284 | 2.951244e-54 | -8.615850e-47 |
| Msa0369420 | Msa0550020 | 0.811958 | 5.395510e-51 | -8.615850e-47 |
| Msa0463530 | Msa0550020 | 0.809457 | 1.874705e-50 | -8.615850e-47 |
| Msa0268110 | Msa0550020 | 0.843864 | 1.077969e-58 | -8.615850e-47 |
| Msa0309720 | Msa0550020 | 0.818010 | 2.450230e-52 | -8.615850e-47 |
| Msa0525880 | Msa0550020 | 0.813239 | 2.830761e-51 | -8.615850e-47 |
| Msa0550020 | Msa0574900 | 0.823873 | 1.095876e-53 | -8.615850e-47 |
| Msa0550020 | Msa0586450 | 0.819278 | 1.263116e-52 | -8.615850e-47 |
| Msa0550020 | Msa0605530 | 0.867287 | 1.529246e-65 | -8.615850e-47 |
| Msa0550020 | Msa0758030 | 0.804247 | 2.366974e-49 | -8.615850e-47 |
| Msa0550020 | Msa1039350 | 0.806269 | 8.927530e-50 | -8.615850e-47 |
| Msa0550020 | Msa1065520 | 0.804661 | 1.941008e-49 | -8.615850e-47 |
| Msa0550020 | Msa1084910 | 0.838419 | 2.907934e-57 | -8.615850e-47 |
| Msa0550020 | Msa1084930 | 0.835035 | 2.120818e-56 | -8.615850e-47 |
| Msa0550020 | Msa1111060 | 0.836020 | 1.195083e-56 | -8.615850e-47 |
| Msa0550020 | Msa1219830 | 0.849117 | 3.972230e-60 | -8.615850e-47 |
| Msa0550020 | Msa1267040 | 0.822932 | 1.818272e-53 | -8.615850e-47 |
| Msa0550020 | Msa1267170 | 0.820452 | 6.809142e-53 | -8.615850e-47 |
| Msa0550020 | Msa1365820 | 0.816088 | 6.622626e-52 | -8.615850e-47 |
| Msa0550020 | Msa1401510 | 0.844482 | 7.355594e-59 | -8.615850e-47 |
| Msa0550020 | Msa1440900 | 0.817884 | 2.616137e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550020 | MtrunA17_Chr4g0034881 | 97.288 | 885 | 7 | 1 | 1 | 868 | 1 | 885 | 0.0 | 1751 |
| Msa0550020 | MtrunA17_Chr3g0144501 | 87.950 | 888 | 86 | 3 | 1 | 868 | 1 | 887 | 0.0 | 1600 |
| Msa0550020 | MtrunA17_Chr4g0038901 | 20.339 | 590 | 410 | 15 | 50 | 596 | 48 | 620 | 4.54e-16 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550020 | AT4G34450.1 | 83.540 | 887 | 126 | 3 | 1 | 868 | 1 | 886 | 0.0 | 1522 |
| Msa0550020 | AT2G16200.1 | 63.768 | 69 | 25 | 0 | 800 | 868 | 1 | 69 | 2.25e-24 | 97.4 |
| Msa0550020 | AT2G16200.2 | 63.077 | 65 | 24 | 0 | 804 | 868 | 19 | 83 | 5.16e-22 | 91.3 |
| Msa0550020 | AT4G23460.1 | 19.922 | 512 | 362 | 14 | 50 | 532 | 48 | 540 | 1.83e-13 | 75.1 |
| Msa0550020 | AT4G11380.2 | 19.899 | 593 | 414 | 16 | 50 | 598 | 70 | 645 | 2.62e-12 | 71.2 |
| Msa0550020 | AT4G11380.1 | 19.899 | 593 | 414 | 16 | 50 | 598 | 48 | 623 | 2.66e-12 | 71.2 |
Find 246 sgRNAs with CRISPR-Local
Find 516 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGAATTATATCTTGTATT+TGG | 0.076600 | 4_1:+45429271 | Msa0550020:three_prime_UTR |
| TGCGGCCTAAATTTGTATTT+TGG | 0.169381 | 4_1:+45428971 | Msa0550020:three_prime_UTR |
| GTTTCAAATACCTCTCAATT+TGG | 0.170952 | 4_1:-45423580 | None:intergenic |
| TACGTACTTAATTGTGTATT+TGG | 0.171251 | 4_1:+45429304 | Msa0550020:three_prime_UTR |
| ATTTCCTGAGTAACATTCTT+AGG | 0.185985 | 4_1:+45425710 | Msa0550020:CDS |
| AATCACCAAAATACAAATTT+AGG | 0.251698 | 4_1:-45428976 | None:intergenic |
| GTACTTGTGCGGCTGTCTTT+TGG | 0.253038 | 4_1:+45428821 | Msa0550020:CDS |
| CATTGAGAAAACAAATATTA+TGG | 0.255718 | 4_1:-45429209 | None:intergenic |
| TGCTTCTGTTGATGGATTAA+AGG | 0.267375 | 4_1:+45426097 | Msa0550020:CDS |
| ATCAACAGAAGCACCAAATT+TGG | 0.272603 | 4_1:-45426087 | None:intergenic |
| AATCATAAGGAAGAGATCTT+AGG | 0.276012 | 4_1:-45427188 | None:intergenic |
| TAAACCCGACATGATACTTC+TGG | 0.288101 | 4_1:-45429112 | None:intergenic |
| GGGAAAGTTCCTTTATTATC+AGG | 0.294554 | 4_1:-45423303 | None:intergenic |
| CAGAATTATATCTTGTATTT+GGG | 0.297391 | 4_1:+45429272 | Msa0550020:three_prime_UTR |
| AAATTTACACTGGTTCGTTC+AGG | 0.315028 | 4_1:+45429328 | Msa0550020:three_prime_UTR |
| CTCGGCTAGTTACACCATTA+AGG | 0.316336 | 4_1:-45425006 | None:intergenic |
| CACTAACTGCAACATTGATA+TGG | 0.316771 | 4_1:+45425365 | Msa0550020:CDS |
| CACAATACCCGAACAACTAT+TGG | 0.321464 | 4_1:+45427019 | Msa0550020:CDS |
| TCATCCACTCGTTCAGAATC+AGG | 0.322426 | 4_1:-45427624 | None:intergenic |
| TTTCAAATACCTCTCAATTT+GGG | 0.330735 | 4_1:-45423579 | None:intergenic |
| ATTCCTGAGTTTGCAAACTT+TGG | 0.335169 | 4_1:+45426775 | Msa0550020:CDS |
| GTGTGGCAATGCTTCTGTTC+TGG | 0.335873 | 4_1:-45425404 | None:intergenic |
| AATACTGTCATCACTCTTCT+TGG | 0.336080 | 4_1:+45427687 | Msa0550020:CDS |
| ATTAAGTATAATTATGACTA+TGG | 0.337761 | 4_1:-45429148 | None:intergenic |
| TCAGGAAATATTACACAATC+AGG | 0.339131 | 4_1:+45424896 | Msa0550020:CDS |
| ACATCTTCCAATAGTTGTTC+GGG | 0.350910 | 4_1:-45427026 | None:intergenic |
| TACATCTTCCAATAGTTGTT+CGG | 0.354992 | 4_1:-45427027 | None:intergenic |
| CTCCACTTCCTTGGCATTGA+AGG | 0.364156 | 4_1:+45425966 | Msa0550020:CDS |
| ATGCCATTCGTGTGCTTTGT+CGG | 0.366102 | 4_1:+45423534 | Msa0550020:CDS |
| AAATTTGGTGCTTCTGTTGA+TGG | 0.368371 | 4_1:+45426089 | Msa0550020:CDS |
| TTCCTGAGTTTGCAAACTTT+GGG | 0.370603 | 4_1:+45426776 | Msa0550020:CDS |
| AAGGTGGAGCAATGAGGTTC+AGG | 0.374504 | 4_1:+45423779 | Msa0550020:CDS |
| AAGGCAATTACAGACCTTAA+TGG | 0.375353 | 4_1:+45424992 | Msa0550020:CDS |
| TTTACCAGGGGCTTTCTTCT+CGG | 0.376153 | 4_1:-45426674 | None:intergenic |
| ACGTACTTAATTGTGTATTT+GGG | 0.379870 | 4_1:+45429305 | Msa0550020:three_prime_UTR |
| CAAATCCTGAGATTGTAAAA+AGG | 0.381855 | 4_1:+45423760 | Msa0550020:CDS |
| AATATACCGAATATATTTGC+TGG | 0.382125 | 4_1:-45426006 | None:intergenic |
| GTGAGCACACTAGCCAAATT+TGG | 0.386077 | 4_1:+45426074 | Msa0550020:CDS |
| TGATATCCCGCTCGTCAATC+TGG | 0.391883 | 4_1:+45426493 | Msa0550020:CDS |
| GGCTGAGACTTGACCTCCTT+GGG | 0.395700 | 4_1:-45426646 | None:intergenic |
| CCAGATGTTGGCAATCCCTC+AGG | 0.396127 | 4_1:-45427243 | None:intergenic |
| AGGGCCGCACTTGCAACAAC+TGG | 0.399353 | 4_1:-45423623 | None:intergenic |
| AACCCACTTTCCTTAGCATC+AGG | 0.400667 | 4_1:-45425799 | None:intergenic |
| CGCGCTGGCTTTGCTACATC+AGG | 0.401512 | 4_1:+45423839 | Msa0550020:CDS |
| ACTTTCAAGAAAATCATAGA+AGG | 0.405493 | 4_1:-45424927 | None:intergenic |
| AGCTGAAGAACAGTGATTGC+TGG | 0.407442 | 4_1:-45425037 | None:intergenic |
| ATCTCGAGAATGCAACTGTT+AGG | 0.414312 | 4_1:+45426042 | Msa0550020:CDS |
| CCTGAGGGATTGCCAACATC+TGG | 0.415471 | 4_1:+45427243 | Msa0550020:CDS |
| ATAGTAAGACTGATATGTAT+AGG | 0.417992 | 4_1:+45423507 | Msa0550020:CDS |
| TCTGAGATTTATTGTTAAAG+AGG | 0.421358 | 4_1:+45427281 | Msa0550020:CDS |
| GGGAAGTGTTCGCTCACCTT+TGG | 0.422783 | 4_1:+45424750 | Msa0550020:CDS |
| GCTTCGGACAAGCCTTCCCT+TGG | 0.423385 | 4_1:-45427660 | None:intergenic |
| TTAGAAAACTTTCCAGATGT+TGG | 0.424560 | 4_1:-45427255 | None:intergenic |
| TTAACCCAAGATCTCGAGAT+TGG | 0.432181 | 4_1:-45423267 | None:intergenic |
| AATGGTGTACCTGATAATAA+AGG | 0.432582 | 4_1:+45423294 | Msa0550020:CDS |
| ATCATAAGGAAGAGATCTTA+GGG | 0.434291 | 4_1:-45427187 | None:intergenic |
| CCAAATACAAGATATAATTC+TGG | 0.436475 | 4_1:-45429271 | None:intergenic |
| GAGAATGTCAACCTTGTTCA+AGG | 0.437546 | 4_1:-45425107 | None:intergenic |
| CTGCAGGTTATTCGCGAGTC+AGG | 0.437953 | 4_1:+45424878 | Msa0550020:intron |
| TCTTTGACTGCAGGAGCCTT+CGG | 0.438517 | 4_1:+45426597 | Msa0550020:intron |
| CTTCAGCCTCGCCAGAGGTT+GGG | 0.441129 | 4_1:-45427491 | None:intergenic |
| TAGTAAGACTGATATGTATA+GGG | 0.441624 | 4_1:+45423508 | Msa0550020:CDS |
| GGCTAGTGTGCTCACAGCAC+TGG | 0.441877 | 4_1:-45426066 | None:intergenic |
| CACAGATTCACCACCTTCTC+CGG | 0.443477 | 4_1:+45422009 | Msa0550020:five_prime_UTR |
| ACAGCAGCAAATCTCAATAC+TGG | 0.445031 | 4_1:-45425079 | None:intergenic |
| AGGCTGAGACTTGACCTCCT+TGG | 0.447016 | 4_1:-45426647 | None:intergenic |
| GGGCTGTTCTTCAAGAGGCC+CGG | 0.450990 | 4_1:+45422731 | Msa0550020:CDS |
| TATTGTCGGGTGTATACATA+GGG | 0.451006 | 4_1:+45428789 | Msa0550020:CDS |
| TCTTCAGCCTCGCCAGAGGT+TGG | 0.451809 | 4_1:-45427492 | None:intergenic |
| ATTCCAGGTTATTGTAGTTG+TGG | 0.452428 | 4_1:+45427122 | Msa0550020:intron |
| TTCCCAAAGTTTGCAAACTC+AGG | 0.454897 | 4_1:-45426778 | None:intergenic |
| CTTTATCTTAACACACTTGG+AGG | 0.455687 | 4_1:+45426422 | Msa0550020:CDS |
| CCTTAGATACTCCACTTCCT+TGG | 0.456772 | 4_1:+45425957 | Msa0550020:intron |
| TCAACATATCTTGACTTGAA+TGG | 0.457042 | 4_1:-45428943 | None:intergenic |
| AATTTGTAATCTGCTTCATA+AGG | 0.458318 | 4_1:-45425476 | None:intergenic |
| GTCCTTCAATGCCAAGGAAG+TGG | 0.461397 | 4_1:-45425968 | None:intergenic |
| TGGACCCCAGCAAATATATT+CGG | 0.466206 | 4_1:+45426000 | Msa0550020:CDS |
| ACCTCTCAATTTGGGTAAGG+AGG | 0.467875 | 4_1:-45423571 | None:intergenic |
| TTTCCTGAGTAACATTCTTA+GGG | 0.469038 | 4_1:+45425711 | Msa0550020:CDS |
| GGCTGTTCTTCAAGAGGCCC+GGG | 0.470531 | 4_1:+45422732 | Msa0550020:CDS |
| CTTCGGACAAGCCTTCCCTT+GGG | 0.471166 | 4_1:-45427659 | None:intergenic |
| CATGTGTGTGACCTTGAATT+AGG | 0.473080 | 4_1:-45428764 | None:intergenic |
| CGAGTGGATGAATACGGTCT+TGG | 0.474887 | 4_1:+45427636 | Msa0550020:CDS |
| AATCTCGAGATCTTGGGTTA+AGG | 0.475513 | 4_1:+45423269 | Msa0550020:CDS |
| AAAGGATGTTGCAATGAAAC+TGG | 0.479392 | 4_1:+45428856 | Msa0550020:CDS |
| AAACCCGACATGATACTTCT+GGG | 0.480836 | 4_1:-45429111 | None:intergenic |
| GTTTGGGTGCTCCTCCTAGT+GGG | 0.481200 | 4_1:+45426710 | Msa0550020:CDS |
| ACTGCAGGAGCCTTCGGAAG+AGG | 0.482502 | 4_1:+45426603 | Msa0550020:intron |
| TCGACTAGCAGTTAGCAAAC+TGG | 0.484708 | 4_1:+45424711 | Msa0550020:CDS |
| TGATTGCTGGAGTTAATTCT+CGG | 0.485049 | 4_1:-45425024 | None:intergenic |
| AACACTTCCCCTTGTCAAGC+TGG | 0.485369 | 4_1:-45424737 | None:intergenic |
| TCGTGTGCTTTGTCGGATCA+CGG | 0.486313 | 4_1:+45423541 | Msa0550020:CDS |
| CCTTCGTCACAAGTCCGAAA+TGG | 0.488100 | 4_1:+45424952 | Msa0550020:CDS |
| CCCGCATATTTGTTCTGCTA+AGG | 0.488720 | 4_1:+45426224 | Msa0550020:CDS |
| TTCACCACCTTCTCCGGCGA+TGG | 0.492908 | 4_1:+45422015 | Msa0550020:exon |
| TGTGTAAAGAATTGCAACTT+TGG | 0.498076 | 4_1:+45429026 | Msa0550020:three_prime_UTR |
| GGTGGTGAATCTGTGAGATC+TGG | 0.498374 | 4_1:-45422001 | None:intergenic |
| ATCCCTGATGCTAAGGAAAG+TGG | 0.499662 | 4_1:+45425796 | Msa0550020:CDS |
| TCTGCTTCAGTAAGCTCCAC+AGG | 0.503537 | 4_1:-45426924 | None:intergenic |
| AATACCTCTCAATTTGGGTA+AGG | 0.504377 | 4_1:-45423574 | None:intergenic |
| GATGCGAGGGACTTCCTCTT+CGG | 0.505539 | 4_1:+45426464 | Msa0550020:CDS |
| ATCTCGAGATTGGAAAAGCT+TGG | 0.506597 | 4_1:-45423257 | None:intergenic |
| AATTTACACTGGTTCGTTCA+GGG | 0.506795 | 4_1:+45429329 | Msa0550020:three_prime_UTR |
| CTTGATCCGTTACACAAGTC+AGG | 0.507330 | 4_1:+45424783 | Msa0550020:CDS |
| GACCAGGTTGACCCAACCTC+TGG | 0.507760 | 4_1:+45427480 | Msa0550020:intron |
| TGAAGTTTAGAATTGAAGAA+AGG | 0.508327 | 4_1:-45421934 | None:intergenic |
| AGGAAGAGATCTTAGGGGTG+TGG | 0.508873 | 4_1:-45427181 | None:intergenic |
| AAAGAATTGCAACTTTGGCT+TGG | 0.508966 | 4_1:+45429031 | Msa0550020:three_prime_UTR |
| GGCAGATTACATATTGAAAG+TGG | 0.509324 | 4_1:+45427563 | Msa0550020:CDS |
| GTCACACACATGCTTATTGT+CGG | 0.512785 | 4_1:+45428775 | Msa0550020:CDS |
| GATGACAGTATTTACAGCTT+CGG | 0.513779 | 4_1:-45427676 | None:intergenic |
| TCATATGAATCCACAGTGGA+TGG | 0.514753 | 4_1:-45426736 | None:intergenic |
| AACCGCTTGCCACAATCTCA+TGG | 0.515317 | 4_1:-45428916 | None:intergenic |
| AGTAACATTCTTAGGGAAGA+AGG | 0.515461 | 4_1:+45425718 | Msa0550020:CDS |
| GGCTGAGCCATCGCCGGAGA+AGG | 0.515540 | 4_1:-45422022 | None:intergenic |
| TGACATTAATTTGGTGCCCA+AGG | 0.517478 | 4_1:+45426630 | Msa0550020:CDS |
| ATATGAATCCACAGTGGATG+GGG | 0.517753 | 4_1:-45426734 | None:intergenic |
| GTCTGCCCAGGTGAATCATA+AGG | 0.518091 | 4_1:-45427201 | None:intergenic |
| AGATCTTGGGTTAAGGAGAA+TGG | 0.521392 | 4_1:+45423276 | Msa0550020:CDS |
| ATATACCGAATATATTTGCT+GGG | 0.521845 | 4_1:-45426005 | None:intergenic |
| TTACCAGTCCTCAGCACCTG+TGG | 0.522599 | 4_1:+45426908 | Msa0550020:intron |
| TCTCGAGAATGCAACTGTTA+GGG | 0.522696 | 4_1:+45426043 | Msa0550020:CDS |
| ACACTTTATCTTAACACACT+TGG | 0.523186 | 4_1:+45426419 | Msa0550020:CDS |
| ATACTGGCTTGGAAGAACTT+AGG | 0.525861 | 4_1:-45425063 | None:intergenic |
| ATGAATTACCTTCGTCGTCA+CGG | 0.525890 | 4_1:-45422066 | None:intergenic |
| GGTTTGGGTGCTCCTCCTAG+TGG | 0.528947 | 4_1:+45426709 | Msa0550020:CDS |
| AGGTCGTCCCACCTAATTCA+AGG | 0.529115 | 4_1:+45428753 | Msa0550020:CDS |
| CTTCCCTAAGAATGTTACTC+AGG | 0.529688 | 4_1:-45425714 | None:intergenic |
| CCTTAGCAGAACAAATATGC+GGG | 0.530435 | 4_1:-45426224 | None:intergenic |
| GGGGCTTTCTTCTCGGCAAG+AGG | 0.532512 | 4_1:-45426667 | None:intergenic |
| CATATGAATCCACAGTGGAT+GGG | 0.533554 | 4_1:-45426735 | None:intergenic |
| TAGAGATATCCCTGATGCTA+AGG | 0.533771 | 4_1:+45425789 | Msa0550020:CDS |
| TACGGTCTTGGCCCAAGGGA+AGG | 0.536329 | 4_1:+45427648 | Msa0550020:CDS |
| TTGCAGTTAGTGACGGCCAT+TGG | 0.536634 | 4_1:-45425354 | None:intergenic |
| TCTCTTCCTTATGATTCACC+TGG | 0.537388 | 4_1:+45427195 | Msa0550020:CDS |
| AATTTATCACCTGTGTCGAC+AGG | 0.539284 | 4_1:-45425864 | None:intergenic |
| TGCTGTCCGCACCTTGAACA+AGG | 0.541322 | 4_1:+45425096 | Msa0550020:CDS |
| TGGTCTCCAGATTGACGAGC+GGG | 0.541433 | 4_1:-45426499 | None:intergenic |
| AGTTAAACAGCCACATAGCT+AGG | 0.542194 | 4_1:+45429001 | Msa0550020:three_prime_UTR |
| GCAAGTGCGGCCCTAGTTAG+TGG | 0.543102 | 4_1:+45423632 | Msa0550020:CDS |
| AGCAAATCTCAATACTGGCT+TGG | 0.543208 | 4_1:-45425074 | None:intergenic |
| TCCCTGATGCTAAGGAAAGT+GGG | 0.543834 | 4_1:+45425797 | Msa0550020:CDS |
| CAGGAAATATTACACAATCA+GGG | 0.544297 | 4_1:+45424897 | Msa0550020:CDS |
| GTAGATGAATACCACTAACT+AGG | 0.544395 | 4_1:-45423643 | None:intergenic |
| TCTTGGCATGCAACCTTGTG+AGG | 0.544482 | 4_1:+45427704 | Msa0550020:CDS |
| TTATTGTCGGGTGTATACAT+AGG | 0.544529 | 4_1:+45428788 | Msa0550020:CDS |
| CATCCACTCGTTCAGAATCA+GGG | 0.547058 | 4_1:-45427623 | None:intergenic |
| TGTATTTGGGAAATTTACAC+TGG | 0.547552 | 4_1:+45429318 | Msa0550020:three_prime_UTR |
| TCTGGCGAGGCTGAAGATGA+TGG | 0.547600 | 4_1:+45427498 | Msa0550020:CDS |
| TGTCTAATTTCAGGAATGCA+TGG | 0.550073 | 4_1:+45427589 | Msa0550020:CDS |
| ATCAAGAGACATTGGGCCAA+AGG | 0.551616 | 4_1:-45424766 | None:intergenic |
| CGTTGAAGATGAATACCAGC+TGG | 0.552341 | 4_1:+45427521 | Msa0550020:CDS |
| TAGTGGTATTCATCTACTCC+AGG | 0.552999 | 4_1:+45423649 | Msa0550020:CDS |
| CCTCTCAATTTGGGTAAGGA+GGG | 0.553566 | 4_1:-45423570 | None:intergenic |
| TCTGAACGAGTGGATGAATA+CGG | 0.554007 | 4_1:+45427630 | Msa0550020:CDS |
| TCTTCAATTCTAAACTTCAG+TGG | 0.554514 | 4_1:+45421938 | Msa0550020:five_prime_UTR |
| TCACACACATGCTTATTGTC+GGG | 0.555717 | 4_1:+45428776 | Msa0550020:CDS |
| ATGAATACGGTCTTGGCCCA+AGG | 0.555779 | 4_1:+45427643 | Msa0550020:CDS |
| TCTTGTACAATTTCACGCGC+TGG | 0.557651 | 4_1:+45423824 | Msa0550020:CDS |
| GCAGATTACATATTGAAAGT+GGG | 0.557921 | 4_1:+45427564 | Msa0550020:CDS |
| GTGCTTTGTCGGATCACGGA+TGG | 0.561141 | 4_1:+45423545 | Msa0550020:CDS |
| ATGATCCACAACTAGATGCT+AGG | 0.562098 | 4_1:+45422761 | Msa0550020:CDS |
| AGATGCTAGGAGATGTTCAC+AGG | 0.562547 | 4_1:+45422774 | Msa0550020:CDS |
| TGTAACGGATCAAGAGACAT+TGG | 0.563004 | 4_1:-45424774 | None:intergenic |
| GTAACGGATCAAGAGACATT+GGG | 0.565503 | 4_1:-45424773 | None:intergenic |
| ATACCCAGAAGTATCATGTC+GGG | 0.565789 | 4_1:+45429108 | Msa0550020:three_prime_UTR |
| CAGGAATGCATGGGAAAGCA+TGG | 0.565865 | 4_1:+45427599 | Msa0550020:CDS |
| TTTACACACACCTAGCTATG+TGG | 0.566281 | 4_1:-45429011 | None:intergenic |
| AACTGGTTACCAGCTTGACA+AGG | 0.570909 | 4_1:+45424728 | Msa0550020:CDS |
| TTTATAACCTCGTCTGCAGA+GGG | 0.571108 | 4_1:-45423325 | None:intergenic |
| ACTTCTGGGTATTGTTGCTG+AGG | 0.572128 | 4_1:-45429097 | None:intergenic |
| TGAGCCATCGCCGGAGAAGG+TGG | 0.574105 | 4_1:-45422019 | None:intergenic |
| CGTCACGAGCTCTCTCATGA+AGG | 0.576960 | 4_1:+45423478 | Msa0550020:CDS |
| TATAACCTCGTCTGCAGAGG+GGG | 0.576990 | 4_1:-45423323 | None:intergenic |
| CATCATTGGCTTACCTCACA+AGG | 0.578882 | 4_1:-45427717 | None:intergenic |
| AACGCCACAAAAGTCTGCCC+AGG | 0.583006 | 4_1:-45427213 | None:intergenic |
| TAGATGAATACCACTAACTA+GGG | 0.583080 | 4_1:-45423642 | None:intergenic |
| GAATCCAGTTGTTGCAAGTG+CGG | 0.583487 | 4_1:+45423619 | Msa0550020:CDS |
| GTCTAATTTCAGGAATGCAT+GGG | 0.584699 | 4_1:+45427590 | Msa0550020:CDS |
| AAGAGTAGTAATAGCAAGTG+TGG | 0.586121 | 4_1:-45425421 | None:intergenic |
| TGAATACGGTCTTGGCCCAA+GGG | 0.587422 | 4_1:+45427644 | Msa0550020:CDS |
| ATCAATGTTGCAGTTAGTGA+CGG | 0.589023 | 4_1:-45425361 | None:intergenic |
| GGATATCAAGTGAGCCGAAG+AGG | 0.589509 | 4_1:-45426478 | None:intergenic |
| TCATCGTCTTTCTTGATAAG+CGG | 0.590697 | 4_1:-45422043 | None:intergenic |
| GTGTGTGACCTTGAATTAGG+TGG | 0.595130 | 4_1:-45428761 | None:intergenic |
| ATTTATAACCTCGTCTGCAG+AGG | 0.595326 | 4_1:-45423326 | None:intergenic |
| CAGATTACATATTGAAAGTG+GGG | 0.600224 | 4_1:+45427565 | Msa0550020:CDS |
| CATCTCCTAGCATCTAGTTG+TGG | 0.601531 | 4_1:-45422766 | None:intergenic |
| GACGATGACCGTGACGACGA+AGG | 0.602361 | 4_1:+45422058 | Msa0550020:CDS |
| TGAGATTGATAAAGATGCGA+GGG | 0.603374 | 4_1:+45426451 | Msa0550020:CDS |
| ACCCACTTTCCTTAGCATCA+GGG | 0.604088 | 4_1:-45425798 | None:intergenic |
| TGTGGCGTTTGAGAAGCCTG+AGG | 0.604943 | 4_1:+45427227 | Msa0550020:CDS |
| ATGTCAAAAGCCTCTTCCGA+AGG | 0.609072 | 4_1:-45426613 | None:intergenic |
| AGTAAGCTCCACAGGTGCTG+AGG | 0.610022 | 4_1:-45426916 | None:intergenic |
| GTGGCGTTTGAGAAGCCTGA+GGG | 0.610662 | 4_1:+45427228 | Msa0550020:CDS |
| CCACTGTGGATTCATATGAA+AGG | 0.612693 | 4_1:+45426740 | Msa0550020:CDS |
| AACACACCTGACTTGTGTAA+CGG | 0.614135 | 4_1:-45424789 | None:intergenic |
| ATCATCTTCAGCCTCGCCAG+AGG | 0.614172 | 4_1:-45427496 | None:intergenic |
| ATAAGCGGCTGAGCCATCGC+CGG | 0.614224 | 4_1:-45422028 | None:intergenic |
| GATCCGACAAAGCACACGAA+TGG | 0.616477 | 4_1:-45423537 | None:intergenic |
| CTCTTCCTTATGATTCACCT+GGG | 0.617576 | 4_1:+45427196 | Msa0550020:CDS |
| CATTAATTTGGTGCCCAAGG+AGG | 0.617595 | 4_1:+45426633 | Msa0550020:CDS |
| GCTTGCCACAATCTCATGGA+TGG | 0.618369 | 4_1:-45428912 | None:intergenic |
| TGACAAGAAGTATGCAGTGA+GGG | 0.618939 | 4_1:-45429072 | None:intergenic |
| CCATTTCGGACTTGTGACGA+AGG | 0.619323 | 4_1:-45424952 | None:intergenic |
| CTTGCCGAGAAGAAAGCCCC+TGG | 0.619544 | 4_1:+45426670 | Msa0550020:CDS |
| ATACCAGCTGGAGGATCTAG+AGG | 0.621534 | 4_1:+45427533 | Msa0550020:CDS |
| GACAGGAAATGAATCAAGCG+TGG | 0.621967 | 4_1:+45425449 | Msa0550020:CDS |
| AACAGAAAAGAAAACTTCTG+TGG | 0.622899 | 4_1:-45423233 | None:intergenic |
| GGTTGACCCAACCTCTGGCG+AGG | 0.622975 | 4_1:+45427485 | Msa0550020:intron |
| AGGAAATATTACACAATCAG+GGG | 0.624728 | 4_1:+45424898 | Msa0550020:CDS |
| CAACCTCTAGATCCTCCAGC+TGG | 0.624747 | 4_1:-45427536 | None:intergenic |
| ATCCATGAGATTGTGGCAAG+CGG | 0.630120 | 4_1:+45428914 | Msa0550020:CDS |
| TGATGCCATCCATGAGATTG+TGG | 0.630840 | 4_1:+45428907 | Msa0550020:CDS |
| AACATTCTTAGGGAAGAAGG+TGG | 0.632595 | 4_1:+45425721 | Msa0550020:CDS |
| GGAGGATCTAGAGGTTGTTG+CGG | 0.641056 | 4_1:+45427542 | Msa0550020:CDS |
| CTTTCAAGAAAATCATAGAA+GGG | 0.642452 | 4_1:-45424926 | None:intergenic |
| CCCTCCTTACCCAAATTGAG+AGG | 0.643975 | 4_1:+45423570 | Msa0550020:CDS |
| GCCTTAGCAGAACAAATATG+CGG | 0.646975 | 4_1:-45426225 | None:intergenic |
| AAGTGTGTTAAGATAAAGTG+TGG | 0.647393 | 4_1:-45426417 | None:intergenic |
| AATCTTCAATGAACTCACAA+AGG | 0.647450 | 4_1:-45425828 | None:intergenic |
| CTGAGATTGATAAAGATGCG+AGG | 0.648808 | 4_1:+45426450 | Msa0550020:CDS |
| GGAGCACCCAAACCACCAGT+TGG | 0.649439 | 4_1:-45426700 | None:intergenic |
| ACTGGTTACCAGCTTGACAA+GGG | 0.650734 | 4_1:+45424729 | Msa0550020:CDS |
| AATACCCAGAAGTATCATGT+CGG | 0.650762 | 4_1:+45429107 | Msa0550020:three_prime_UTR |
| TTGTCGGGTGTATACATAGG+GGG | 0.654756 | 4_1:+45428791 | Msa0550020:CDS |
| GGTGGCAATGACACATCCAA+TGG | 0.659109 | 4_1:+45425338 | Msa0550020:intron |
| GGACCCTGATTCTGAACGAG+TGG | 0.660047 | 4_1:+45427620 | Msa0550020:CDS |
| TGTCAACCTTGTTCAAGGTG+CGG | 0.660820 | 4_1:-45425102 | None:intergenic |
| CTGGTTACCAGCTTGACAAG+GGG | 0.662402 | 4_1:+45424730 | Msa0550020:CDS |
| TATGAATCCACAGTGGATGG+GGG | 0.670381 | 4_1:-45426733 | None:intergenic |
| TGTGTGACCTTGAATTAGGT+GGG | 0.672239 | 4_1:-45428760 | None:intergenic |
| ATTCACTTACCTGTCGACAC+AGG | 0.673693 | 4_1:+45425855 | Msa0550020:CDS |
| GGGGTGTGAAGGTACTTGTG+CGG | 0.674790 | 4_1:+45428810 | Msa0550020:CDS |
| AGATTACATATTGAAAGTGG+GGG | 0.675495 | 4_1:+45427566 | Msa0550020:CDS |
| TGAAGATGAATACCAGCTGG+AGG | 0.678607 | 4_1:+45427524 | Msa0550020:CDS |
| CTTAGCAGAACAAATATGCG+GGG | 0.682439 | 4_1:-45426223 | None:intergenic |
| CAAGATATGTTGACTCAATG+CGG | 0.692650 | 4_1:+45428953 | Msa0550020:three_prime_UTR |
| TATACCGAATATATTTGCTG+GGG | 0.697705 | 4_1:-45426004 | None:intergenic |
| CTGGTCTCCAGATTGACGAG+CGG | 0.703175 | 4_1:-45426500 | None:intergenic |
| ATTGTCGGGTGTATACATAG+GGG | 0.715775 | 4_1:+45428790 | Msa0550020:CDS |
| CCTTTCATATGAATCCACAG+TGG | 0.729978 | 4_1:-45426740 | None:intergenic |
| CTGACAAGAAGTATGCAGTG+AGG | 0.736360 | 4_1:-45429073 | None:intergenic |
| TCACTACTTGCAGGGCACAG+AGG | 0.740479 | 4_1:+45428733 | Msa0550020:intron |
| TTATAACCTCGTCTGCAGAG+GGG | 0.747009 | 4_1:-45423324 | None:intergenic |
| TCATAAGGAAGAGATCTTAG+GGG | 0.753553 | 4_1:-45427186 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTTGTTTATTTATCTA+TGG | + | chr4_1:45422809-45422828 | Msa0550020:intron | 10.0% |
| !! | ATCTTTAATTAAGAAATAAA+AGG | - | chr4_1:45423115-45423134 | None:intergenic | 10.0% |
| !!! | TTTTAAAAAAATAAAAGAGA+TGG | - | chr4_1:45423449-45423468 | None:intergenic | 10.0% |
| !!! | ATCTCTTTTATTTTTTTAAA+AGG | + | chr4_1:45423448-45423467 | Msa0550020:intron | 10.0% |
| !!! | TTAAATTTTTATTTGGAAAA+TGG | - | chr4_1:45424167-45424186 | None:intergenic | 10.0% |
| !! | TCCAAATAAAAATTTAAATT+CGG | + | chr4_1:45424170-45424189 | Msa0550020:intron | 10.0% |
| !!! | TAATATTAAAAGATTTTTCA+CGG | + | chr4_1:45425259-45425278 | Msa0550020:intron | 10.0% |
| !! | TATATATTAATAGTAATACC+TGG | - | chr4_1:45423670-45423689 | None:intergenic | 15.0% |
| !!! | TATATTTTAATACACAAAGA+AGG | - | chr4_1:45423894-45423913 | None:intergenic | 15.0% |
| !!! | ACCGAATTTAAATTTTTATT+TGG | - | chr4_1:45424174-45424193 | None:intergenic | 15.0% |
| !! | AATTTAATAGAATTTGAGAA+AGG | + | chr4_1:45425140-45425159 | Msa0550020:intron | 15.0% |
| !! | TTATTAATAATTTATGAGTG+TGG | + | chr4_1:45425301-45425320 | Msa0550020:intron | 15.0% |
| !!! | TCTATTATGTTATTATTTTC+AGG | + | chr4_1:45425683-45425702 | Msa0550020:intron | 15.0% |
| !!! | TCTAGAATTTTTGTTTATTT+AGG | + | chr4_1:45426150-45426169 | Msa0550020:intron | 15.0% |
| !!! | CTAGAATTTTTGTTTATTTA+GGG | + | chr4_1:45426151-45426170 | Msa0550020:intron | 15.0% |
| !!! | ATCAACTTCAAAATTTTAAA+AGG | - | chr4_1:45428055-45428074 | None:intergenic | 15.0% |
| !! | ATTAAGTATAATTATGACTA+TGG | - | chr4_1:45429151-45429170 | None:intergenic | 15.0% |
| !! | TTTGAATTTCAACAAGTTTA+TGG | + | chr4_1:45422525-45422544 | Msa0550020:intron | 20.0% |
| !! | AAAGAATTAATCCACAAATA+CGG | - | chr4_1:45422660-45422679 | None:intergenic | 20.0% |
| !! | AAAGATTGTATCTTACTTAT+AGG | + | chr4_1:45423129-45423148 | Msa0550020:intron | 20.0% |
| !! | AAGAAAAGAATTACTGAAAA+AGG | - | chr4_1:45423192-45423211 | None:intergenic | 20.0% |
| !!! | TCAATTTTTTTGATTTAGCA+CGG | + | chr4_1:45424004-45424023 | Msa0550020:intron | 20.0% |
| !!! | AATATCTAACAGGTTTTAAA+AGG | - | chr4_1:45424076-45424095 | None:intergenic | 20.0% |
| !!! | AATTTTTATTTGGAAAATGG+AGG | - | chr4_1:45424164-45424183 | None:intergenic | 20.0% |
| !! | TAAAAATTTAAATTCGGTAC+AGG | + | chr4_1:45424176-45424195 | Msa0550020:intron | 20.0% |
| !! | AAAAATTTAAATTCGGTACA+GGG | + | chr4_1:45424177-45424196 | Msa0550020:intron | 20.0% |
| !!! | GCTTAAGCTTTTTTAATAAT+TGG | + | chr4_1:45424231-45424250 | Msa0550020:intron | 20.0% |
| !!! | CTTGTTGATATTTGATTTTT+TGG | + | chr4_1:45424343-45424362 | Msa0550020:intron | 20.0% |
| !! | ATGAATGTAACTTATTTGTT+TGG | - | chr4_1:45424643-45424662 | None:intergenic | 20.0% |
| !! | TTGCATTTCTATAATTTATG+TGG | + | chr4_1:45426297-45426316 | Msa0550020:intron | 20.0% |
| !!! | TGCTTTGATTTATATTTTGA+TGG | + | chr4_1:45426358-45426377 | Msa0550020:intron | 20.0% |
| !!! | TTCTTTTCATTAGTTACTTT+AGG | + | chr4_1:45426557-45426576 | Msa0550020:intron | 20.0% |
| !! | CATGATCAGTTTAATAAAAT+GGG | - | chr4_1:45427779-45427798 | None:intergenic | 20.0% |
| !! | TCATGATCAGTTTAATAAAA+TGG | - | chr4_1:45427780-45427799 | None:intergenic | 20.0% |
| !!! | GTAACATTTTTTTAGTTTTC+TGG | - | chr4_1:45427866-45427885 | None:intergenic | 20.0% |
| !! | ACTAAAAAAATGTTACTATC+AGG | + | chr4_1:45427870-45427889 | Msa0550020:intron | 20.0% |
| !!! | AAATTTTAAAAGGAACTAAG+CGG | - | chr4_1:45428045-45428064 | None:intergenic | 20.0% |
| !! | AATCACCAAAATACAAATTT+AGG | - | chr4_1:45428979-45428998 | None:intergenic | 20.0% |
| !!! | TAAATTTGTATTTTGGTGAT+TGG | + | chr4_1:45428978-45428997 | Msa0550020:three_prime_UTR | 20.0% |
| !! | CATTGAGAAAACAAATATTA+TGG | - | chr4_1:45429212-45429231 | None:intergenic | 20.0% |
| !!! | TATTTGTTTTCTCAATGAAT+TGG | + | chr4_1:45429215-45429234 | Msa0550020:three_prime_UTR | 20.0% |
| !! | CAGAATTATATCTTGTATTT+GGG | + | chr4_1:45429272-45429291 | Msa0550020:three_prime_UTR | 20.0% |
| !! | TGAAGTTTAGAATTGAAGAA+AGG | - | chr4_1:45421937-45421956 | None:intergenic | 25.0% |
| !!! | ATTATGCAGTGTTTTTGTAT+AGG | - | chr4_1:45421979-45421998 | None:intergenic | 25.0% |
| ! | TAGAAACAGAAATTAAGCAT+TGG | - | chr4_1:45422162-45422181 | None:intergenic | 25.0% |
| !!! | CTTAATTTCTGTTTCTATTG+AGG | + | chr4_1:45422165-45422184 | Msa0550020:intron | 25.0% |
| !!! | GTTCGTTTTTTAATTGTTGT+CGG | + | chr4_1:45422232-45422251 | Msa0550020:intron | 25.0% |
| !! | TATAGCTTCTTTTCAAACTT+CGG | + | chr4_1:45422585-45422604 | Msa0550020:intron | 25.0% |
| ! | TACGGACATTATAAGTATAT+AGG | - | chr4_1:45422642-45422661 | None:intergenic | 25.0% |
| ! | ACAGTAAAAAATCAAACTAC+TGG | - | chr4_1:45423008-45423027 | None:intergenic | 25.0% |
| ! | ATAGTAAGACTGATATGTAT+AGG | + | chr4_1:45423507-45423526 | Msa0550020:CDS | 25.0% |
| ! | TAGTAAGACTGATATGTATA+GGG | + | chr4_1:45423508-45423527 | Msa0550020:CDS | 25.0% |
| ! | TTTCAAATACCTCTCAATTT+GGG | - | chr4_1:45423582-45423601 | None:intergenic | 25.0% |
| ! | TGTAATTCTGAATATCTAAC+AGG | - | chr4_1:45424086-45424105 | None:intergenic | 25.0% |
| ! | AAAATTTAAATTCGGTACAG+GGG | + | chr4_1:45424178-45424197 | Msa0550020:intron | 25.0% |
| !! | AGTTTTGCTTTCTTTTATTG+TGG | - | chr4_1:45424322-45424341 | None:intergenic | 25.0% |
| !! | GCTAAAATAAGAGTATGAAT+AGG | - | chr4_1:45424435-45424454 | None:intergenic | 25.0% |
| !! | TATATCAATGTGTCATTGAT+AGG | - | chr4_1:45424591-45424610 | None:intergenic | 25.0% |
| !! | CATTCATATTTGTTGAAACA+TGG | + | chr4_1:45424656-45424675 | Msa0550020:intron | 25.0% |
| ! | CTTTCAAGAAAATCATAGAA+GGG | - | chr4_1:45424929-45424948 | None:intergenic | 25.0% |
| ! | ACTTTCAAGAAAATCATAGA+AGG | - | chr4_1:45424930-45424949 | None:intergenic | 25.0% |
| ! | AATTTGTAATCTGCTTCATA+AGG | - | chr4_1:45425479-45425498 | None:intergenic | 25.0% |
| !!! | CACAGAGATCTATATTTTAA+AGG | - | chr4_1:45425573-45425592 | None:intergenic | 25.0% |
| !! | TTGAATATTTTCCCTGATAA+TGG | + | chr4_1:45425645-45425664 | Msa0550020:intron | 25.0% |
| ! | AGTAATTTAGACCATTATCA+GGG | - | chr4_1:45425659-45425678 | None:intergenic | 25.0% |
| ! | ATATACCGAATATATTTGCT+GGG | - | chr4_1:45426008-45426027 | None:intergenic | 25.0% |
| ! | AATATACCGAATATATTTGC+TGG | - | chr4_1:45426009-45426028 | None:intergenic | 25.0% |
| !!! | TATGATTTTGATTTCTTTGC+AGG | + | chr4_1:45426382-45426401 | Msa0550020:intron | 25.0% |
| !!! | ACTTACGTATTTTTTCAAAC+TGG | - | chr4_1:45426522-45426541 | None:intergenic | 25.0% |
| ! | CGGATATAGAAAGAATAATA+CGG | - | chr4_1:45426849-45426868 | None:intergenic | 25.0% |
| ! | CAGAATACATATGATTAGAT+CGG | - | chr4_1:45426869-45426888 | None:intergenic | 25.0% |
| !! | TCTGAGATTTATTGTTAAAG+AGG | + | chr4_1:45427281-45427300 | Msa0550020:CDS | 25.0% |
| !! | ACATAATATAATGGAGATCT+TGG | - | chr4_1:45427338-45427357 | None:intergenic | 25.0% |
| !! | TAGACCTATAATAGTTTTTG+TGG | + | chr4_1:45427425-45427444 | Msa0550020:intron | 25.0% |
| ! | CTTTCCACAAAAACTATTAT+AGG | - | chr4_1:45427432-45427451 | None:intergenic | 25.0% |
| !! | TTTCTGGAAAGAATCTAATT+GGG | - | chr4_1:45427850-45427869 | None:intergenic | 25.0% |
| !!! | TTTTCTGGAAAGAATCTAAT+TGG | - | chr4_1:45427851-45427870 | None:intergenic | 25.0% |
| !! | CTTTCTCATACATCAATTTT+AGG | + | chr4_1:45427969-45427988 | Msa0550020:intron | 25.0% |
| ! | AAAGTTTAAATGCTACTCAT+GGG | - | chr4_1:45428113-45428132 | None:intergenic | 25.0% |
| ! | TAAAGTTTAAATGCTACTCA+TGG | - | chr4_1:45428114-45428133 | None:intergenic | 25.0% |
| ! | TATCAAAACTCTCAACAATT+GGG | - | chr4_1:45428276-45428295 | None:intergenic | 25.0% |
| ! | ATATCAAAACTCTCAACAAT+TGG | - | chr4_1:45428277-45428296 | None:intergenic | 25.0% |
| ! | AAAGAGATGCAAATACATTT+AGG | + | chr4_1:45428305-45428324 | Msa0550020:intron | 25.0% |
| !! | AGTAGTTCCTTTTAATGATT+TGG | + | chr4_1:45428353-45428372 | Msa0550020:intron | 25.0% |
| ! | TCTAATGCCAAATCATTAAA+AGG | - | chr4_1:45428363-45428382 | None:intergenic | 25.0% |
| ! | AACCTAAGAAACTCTTAAAT+CGG | - | chr4_1:45428470-45428489 | None:intergenic | 25.0% |
| ! | AACAAAATGTCTAATATTCC+AGG | - | chr4_1:45428578-45428597 | None:intergenic | 25.0% |
| ! | CCAAATACAAGATATAATTC+TGG | - | chr4_1:45429274-45429293 | None:intergenic | 25.0% |
| ! | CCAGAATTATATCTTGTATT+TGG | + | chr4_1:45429271-45429290 | Msa0550020:three_prime_UTR | 25.0% |
| ! | TACGTACTTAATTGTGTATT+TGG | + | chr4_1:45429304-45429323 | Msa0550020:three_prime_UTR | 25.0% |
| ! | ACGTACTTAATTGTGTATTT+GGG | + | chr4_1:45429305-45429324 | Msa0550020:three_prime_UTR | 25.0% |
| TCTTCAATTCTAAACTTCAG+TGG | + | chr4_1:45421938-45421957 | Msa0550020:five_prime_UTR | 30.0% | |
| AAGAGAAAAACGGAAAAAGT+GGG | - | chr4_1:45422096-45422115 | None:intergenic | 30.0% | |
| AAAGAGAAAAACGGAAAAAG+TGG | - | chr4_1:45422097-45422116 | None:intergenic | 30.0% | |
| ! | TATAGCTTCTTTTCACACTT+TGG | + | chr4_1:45422377-45422396 | Msa0550020:intron | 30.0% |
| ACTTATAATGTCCGTATTTG+TGG | + | chr4_1:45422646-45422665 | Msa0550020:intron | 30.0% | |
| ! | AGATAATTATTCCCCGTTTT+TGG | + | chr4_1:45422696-45422715 | Msa0550020:intron | 30.0% |
| !! | GATAATTATTCCCCGTTTTT+GGG | + | chr4_1:45422697-45422716 | Msa0550020:intron | 30.0% |
| ACGTAATCAATCACATGTAT+CGG | + | chr4_1:45422914-45422933 | Msa0550020:intron | 30.0% | |
| !! | ATAACAGTTTTGTGATAACC+TGG | - | chr4_1:45423047-45423066 | None:intergenic | 30.0% |
| ! | CTTTTCTTGCCTCATTTTAT+AGG | + | chr4_1:45423204-45423223 | Msa0550020:intron | 30.0% |
| AACAGAAAAGAAAACTTCTG+TGG | - | chr4_1:45423236-45423255 | None:intergenic | 30.0% | |
| AATGGTGTACCTGATAATAA+AGG | + | chr4_1:45423294-45423313 | Msa0550020:CDS | 30.0% | |
| ACTTGTCAGATTCACTTAAA+CGG | + | chr4_1:45423392-45423411 | Msa0550020:intron | 30.0% | |
| GTTTCAAATACCTCTCAATT+TGG | - | chr4_1:45423583-45423602 | None:intergenic | 30.0% | |
| TAGATGAATACCACTAACTA+GGG | - | chr4_1:45423645-45423664 | None:intergenic | 30.0% | |
| GTATATTTCATCTACATCAG+CGG | + | chr4_1:45423711-45423730 | Msa0550020:intron | 30.0% | |
| CAAATCCTGAGATTGTAAAA+AGG | + | chr4_1:45423760-45423779 | Msa0550020:CDS | 30.0% | |
| AATGTAATTCATCAGTTCCT+GGG | + | chr4_1:45423952-45423971 | Msa0550020:intron | 30.0% | |
| ATTGAATATTTGACATGAGC+TGG | + | chr4_1:45424036-45424055 | Msa0550020:intron | 30.0% | |
| ! | ATTGAAGCTTTATGATCAAG+TGG | + | chr4_1:45424110-45424129 | Msa0550020:intron | 30.0% |
| AAATTTAAATTCGGTACAGG+GGG | + | chr4_1:45424179-45424198 | Msa0550020:intron | 30.0% | |
| TTAAATATGAAGACCTTCAG+TGG | + | chr4_1:45424205-45424224 | Msa0550020:intron | 30.0% | |
| ! | ACTTTTCTATAAGCTTCTCA+TGG | + | chr4_1:45424285-45424304 | Msa0550020:intron | 30.0% |
| ATTCACAGTAGAATAGTAGA+TGG | - | chr4_1:45424395-45424414 | None:intergenic | 30.0% | |
| AATAAAGAAGGATTCTTGGA+CGG | - | chr4_1:45424614-45424633 | None:intergenic | 30.0% | |
| AGGGACAACTATATAAGAAA+AGG | - | chr4_1:45424817-45424836 | None:intergenic | 30.0% | |
| ! | TTTTCTTATATAGTTGTCCC+TGG | + | chr4_1:45424816-45424835 | Msa0550020:intron | 30.0% |
| TTTCTTATATAGTTGTCCCT+GGG | + | chr4_1:45424817-45424836 | Msa0550020:intron | 30.0% | |
| TTATGTACCATAATATCTGC+AGG | + | chr4_1:45424862-45424881 | Msa0550020:intron | 30.0% | |
| TCAGGAAATATTACACAATC+AGG | + | chr4_1:45424896-45424915 | Msa0550020:CDS | 30.0% | |
| CAGGAAATATTACACAATCA+GGG | + | chr4_1:45424897-45424916 | Msa0550020:CDS | 30.0% | |
| AGGAAATATTACACAATCAG+GGG | + | chr4_1:45424898-45424917 | Msa0550020:CDS | 30.0% | |
| AGCTTCAAAAATCACCATTT+CGG | - | chr4_1:45424969-45424988 | None:intergenic | 30.0% | |
| ! | TTTTCTGTCTGTTATGATGT+TGG | + | chr4_1:45425202-45425221 | Msa0550020:intron | 30.0% |
| TTTCTGTCTGTTATGATGTT+GGG | + | chr4_1:45425203-45425222 | Msa0550020:intron | 30.0% | |
| !! | ATTACTACTCTTTTGAAGAC+AGG | + | chr4_1:45425432-45425451 | Msa0550020:CDS | 30.0% |
| GCTGAAAGAAACATATAGAA+TGG | - | chr4_1:45425606-45425625 | None:intergenic | 30.0% | |
| CAAATGAAAGATGTAACATC+TGG | - | chr4_1:45425628-45425647 | None:intergenic | 30.0% | |
| CAGTAATTTAGACCATTATC+AGG | - | chr4_1:45425660-45425679 | None:intergenic | 30.0% | |
| !! | CTGATAATGGTCTAAATTAC+TGG | + | chr4_1:45425658-45425677 | Msa0550020:intron | 30.0% |
| ATTTCCTGAGTAACATTCTT+AGG | + | chr4_1:45425710-45425729 | Msa0550020:CDS | 30.0% | |
| TTTCCTGAGTAACATTCTTA+GGG | + | chr4_1:45425711-45425730 | Msa0550020:CDS | 30.0% | |
| AATCTTCAATGAACTCACAA+AGG | - | chr4_1:45425831-45425850 | None:intergenic | 30.0% | |
| TAGTTTACTTTGCGTGATAT+TGG | + | chr4_1:45425901-45425920 | Msa0550020:intron | 30.0% | |
| AAGGGGAAAAAATTAACAAG+AGG | - | chr4_1:45425934-45425953 | None:intergenic | 30.0% | |
| ! | TATACCGAATATATTTGCTG+GGG | - | chr4_1:45426007-45426026 | None:intergenic | 30.0% |
| TAAACTTCCTTGAAAATCGT+AGG | - | chr4_1:45426325-45426344 | None:intergenic | 30.0% | |
| AAGTGTGTTAAGATAAAGTG+TGG | - | chr4_1:45426420-45426439 | None:intergenic | 30.0% | |
| ACACTTTATCTTAACACACT+TGG | + | chr4_1:45426419-45426438 | Msa0550020:CDS | 30.0% | |
| ! | AGAGGCTTTTGACATTAATT+TGG | + | chr4_1:45426621-45426640 | Msa0550020:CDS | 30.0% |
| !! | AAACTTTGGGAAGCTTTTTA+AGG | + | chr4_1:45426789-45426808 | Msa0550020:CDS | 30.0% |
| TACATCTTCCAATAGTTGTT+CGG | - | chr4_1:45427030-45427049 | None:intergenic | 30.0% | |
| TCATACTATTATGCAACTTC+AGG | + | chr4_1:45427076-45427095 | Msa0550020:intron | 30.0% | |
| AGGGAAAAATATTACACAGA+TGG | - | chr4_1:45427102-45427121 | None:intergenic | 30.0% | |
| ! | GTAATATTTTTCCCTATTCC+AGG | + | chr4_1:45427107-45427126 | Msa0550020:intron | 30.0% |
| AACTACAATAACCTGGAATA+GGG | - | chr4_1:45427121-45427140 | None:intergenic | 30.0% | |
| ATCATAAGGAAGAGATCTTA+GGG | - | chr4_1:45427190-45427209 | None:intergenic | 30.0% | |
| AATCATAAGGAAGAGATCTT+AGG | - | chr4_1:45427191-45427210 | None:intergenic | 30.0% | |
| TTAGAAAACTTTCCAGATGT+TGG | - | chr4_1:45427258-45427277 | None:intergenic | 30.0% | |
| CACACGCATACATAATATAA+TGG | - | chr4_1:45427347-45427366 | None:intergenic | 30.0% | |
| GCAGATTACATATTGAAAGT+GGG | + | chr4_1:45427564-45427583 | Msa0550020:CDS | 30.0% | |
| CAGATTACATATTGAAAGTG+GGG | + | chr4_1:45427565-45427584 | Msa0550020:CDS | 30.0% | |
| AGATTACATATTGAAAGTGG+GGG | + | chr4_1:45427566-45427585 | Msa0550020:CDS | 30.0% | |
| ATGAATACGAAATCAGTGTA+TGG | - | chr4_1:45427905-45427924 | None:intergenic | 30.0% | |
| ! | ATTCATTTTCCATGCCTTAT+TGG | + | chr4_1:45427919-45427938 | Msa0550020:intron | 30.0% |
| !! | TTAGGTTGAACATTATTCTG+AGG | + | chr4_1:45427987-45428006 | Msa0550020:intron | 30.0% |
| !! | AACTTTAAAGTGCTGTTGTT+TGG | + | chr4_1:45428127-45428146 | Msa0550020:intron | 30.0% |
| GTATTTGCATCTCTTTATGT+AGG | - | chr4_1:45428301-45428320 | None:intergenic | 30.0% | |
| ACCTAAGAAACTCTTAAATC+GGG | - | chr4_1:45428469-45428488 | None:intergenic | 30.0% | |
| TTCTTTCAAAAGTTCTTTGG+TGG | - | chr4_1:45428620-45428639 | None:intergenic | 30.0% | |
| CCTTTCTTTCAAAAGTTCTT+TGG | - | chr4_1:45428623-45428642 | None:intergenic | 30.0% | |
| !! | CCAAAGAACTTTTGAAAGAA+AGG | + | chr4_1:45428620-45428639 | Msa0550020:intron | 30.0% |
| ! | TTTTATTGTTCACTACTTGC+AGG | + | chr4_1:45428724-45428743 | Msa0550020:intron | 30.0% |
| TTTATTGTTCACTACTTGCA+GGG | + | chr4_1:45428725-45428744 | Msa0550020:intron | 30.0% | |
| ! | TCAACATATCTTGACTTGAA+TGG | - | chr4_1:45428946-45428965 | None:intergenic | 30.0% |
| TGTGTAAAGAATTGCAACTT+TGG | + | chr4_1:45429026-45429045 | Msa0550020:three_prime_UTR | 30.0% | |
| ! | TGTTTTCTCAATGAATTGGA+TGG | + | chr4_1:45429219-45429238 | Msa0550020:three_prime_UTR | 30.0% |
| TGTATTTGGGAAATTTACAC+TGG | + | chr4_1:45429318-45429337 | Msa0550020:three_prime_UTR | 30.0% | |
| TCATCGTCTTTCTTGATAAG+CGG | - | chr4_1:45422046-45422065 | None:intergenic | 35.0% | |
| AATTGCGCGAAAGAGAAAAA+CGG | - | chr4_1:45422106-45422125 | None:intergenic | 35.0% | |
| TTGGATCTAGAAAATGAGCA+CGG | - | chr4_1:45422143-45422162 | None:intergenic | 35.0% | |
| !! | TCTGTTTCTATTGAGGAATG+CGG | + | chr4_1:45422172-45422191 | Msa0550020:intron | 35.0% |
| TTCAAAAAACGCACTAATCG+TGG | - | chr4_1:45422403-45422422 | None:intergenic | 35.0% | |
| ! | AATTTGAAATGCCGTTCGTA+AGG | + | chr4_1:45422490-45422509 | Msa0550020:intron | 35.0% |
| ! | GTTTATGGTGACTAGTTAGT+TGG | + | chr4_1:45422540-45422559 | Msa0550020:intron | 35.0% |
| ! | CTTCTTTTCAAACTTCGGTT+AGG | + | chr4_1:45422590-45422609 | Msa0550020:intron | 35.0% |
| ! | CTTTTCAATTCCCAAAAACG+GGG | - | chr4_1:45422710-45422729 | None:intergenic | 35.0% |
| ! | CCTTTTCAATTCCCAAAAAC+GGG | - | chr4_1:45422711-45422730 | None:intergenic | 35.0% |
| ! | CCCTTTTCAATTCCCAAAAA+CGG | - | chr4_1:45422712-45422731 | None:intergenic | 35.0% |
| !! | CCGTTTTTGGGAATTGAAAA+GGG | + | chr4_1:45422709-45422728 | Msa0550020:CDS | 35.0% |
| !! | CGTTTTTGGGAATTGAAAAG+GGG | + | chr4_1:45422710-45422729 | Msa0550020:CDS | 35.0% |
| !! | GTTTTTGGGAATTGAAAAGG+GGG | + | chr4_1:45422711-45422730 | Msa0550020:CDS | 35.0% |
| TTGTGGATCATTAAAAACCC+GGG | - | chr4_1:45422752-45422771 | None:intergenic | 35.0% | |
| GTTGTGGATCATTAAAAACC+CGG | - | chr4_1:45422753-45422772 | None:intergenic | 35.0% | |
| ACTGTTATACCTACTGAATC+AGG | + | chr4_1:45423059-45423078 | Msa0550020:intron | 35.0% | |
| CTGTTATACCTACTGAATCA+GGG | + | chr4_1:45423060-45423079 | Msa0550020:intron | 35.0% | |
| TGGCTTCAACCTATAAAATG+AGG | - | chr4_1:45423216-45423235 | None:intergenic | 35.0% | |
| ! | TTTTCCAATCTCGAGATCTT+GGG | + | chr4_1:45423263-45423282 | Msa0550020:CDS | 35.0% |
| GGGAAAGTTCCTTTATTATC+AGG | - | chr4_1:45423306-45423325 | None:intergenic | 35.0% | |
| AATACCTCTCAATTTGGGTA+AGG | - | chr4_1:45423577-45423596 | None:intergenic | 35.0% | |
| GTAGATGAATACCACTAACT+AGG | - | chr4_1:45423646-45423665 | None:intergenic | 35.0% | |
| ATCCTGAGATTGTAAAAAGG+TGG | + | chr4_1:45423763-45423782 | Msa0550020:CDS | 35.0% | |
| CAATGTAATTCATCAGTTCC+TGG | + | chr4_1:45423951-45423970 | Msa0550020:intron | 35.0% | |
| TTGATCTTGATACATATCCC+AGG | - | chr4_1:45423972-45423991 | None:intergenic | 35.0% | |
| GATGGCATAATGTCATAAGA+TGG | - | chr4_1:45424377-45424396 | None:intergenic | 35.0% | |
| CATTGCTATGTTCTCAACTT+CGG | + | chr4_1:45424531-45424550 | Msa0550020:intron | 35.0% | |
| GTCCAAGAATCCTTCTTTAT+TGG | + | chr4_1:45424613-45424632 | Msa0550020:intron | 35.0% | |
| TGCCAATAAAGAAGGATTCT+TGG | - | chr4_1:45424618-45424637 | None:intergenic | 35.0% | |
| GTTTGGTATGCCAATAAAGA+AGG | - | chr4_1:45424626-45424645 | None:intergenic | 35.0% | |
| GAATTGCTACATTGCAGATA+CGG | + | chr4_1:45424680-45424699 | Msa0550020:intron | 35.0% | |
| CGAATAACCTGCAGATATTA+TGG | - | chr4_1:45424872-45424891 | None:intergenic | 35.0% | |
| AAGGCAATTACAGACCTTAA+TGG | + | chr4_1:45424992-45425011 | Msa0550020:CDS | 35.0% | |
| TGATTGCTGGAGTTAATTCT+CGG | - | chr4_1:45425027-45425046 | None:intergenic | 35.0% | |
| ATCAATGTTGCAGTTAGTGA+CGG | - | chr4_1:45425364-45425383 | None:intergenic | 35.0% | |
| CACTAACTGCAACATTGATA+TGG | + | chr4_1:45425365-45425384 | Msa0550020:CDS | 35.0% | |
| AAGAGTAGTAATAGCAAGTG+TGG | - | chr4_1:45425424-45425443 | None:intergenic | 35.0% | |
| AGTAACATTCTTAGGGAAGA+AGG | + | chr4_1:45425718-45425737 | Msa0550020:CDS | 35.0% | |
| ! | TCGACACAGGTGATAAATTT+TGG | + | chr4_1:45425868-45425887 | Msa0550020:intron | 35.0% |
| CATTGAAGGACCAAAAACAT+TGG | + | chr4_1:45425980-45425999 | Msa0550020:CDS | 35.0% | |
| !! | ATCAACAGAAGCACCAAATT+TGG | - | chr4_1:45426090-45426109 | None:intergenic | 35.0% |
| !! | AAATTTGGTGCTTCTGTTGA+TGG | + | chr4_1:45426089-45426108 | Msa0550020:CDS | 35.0% |
| !! | TGCTTCTGTTGATGGATTAA+AGG | + | chr4_1:45426097-45426116 | Msa0550020:CDS | 35.0% |
| CTTTATCTTAACACACTTGG+AGG | + | chr4_1:45426422-45426441 | Msa0550020:CDS | 35.0% | |
| TGAGATTGATAAAGATGCGA+GGG | + | chr4_1:45426451-45426470 | Msa0550020:CDS | 35.0% | |
| ATTCCTGAGTTTGCAAACTT+TGG | + | chr4_1:45426775-45426794 | Msa0550020:CDS | 35.0% | |
| TTCCTGAGTTTGCAAACTTT+GGG | + | chr4_1:45426776-45426795 | Msa0550020:CDS | 35.0% | |
| ACATCTTCCAATAGTTGTTC+GGG | - | chr4_1:45427029-45427048 | None:intergenic | 35.0% | |
| CAACTACAATAACCTGGAAT+AGG | - | chr4_1:45427122-45427141 | None:intergenic | 35.0% | |
| ATTCCAGGTTATTGTAGTTG+TGG | + | chr4_1:45427122-45427141 | Msa0550020:intron | 35.0% | |
| ! | AGAAGCAGAAGAATTTTCTC+AGG | + | chr4_1:45427152-45427171 | Msa0550020:CDS | 35.0% |
| TCATAAGGAAGAGATCTTAG+GGG | - | chr4_1:45427189-45427208 | None:intergenic | 35.0% | |
| ! | GTACTTATTCCCTTTGTTTG+TGG | + | chr4_1:45427303-45427322 | Msa0550020:intron | 35.0% |
| ACAGGAAAACCACAAACAAA+GGG | - | chr4_1:45427315-45427334 | None:intergenic | 35.0% | |
| ! | ATATAATGGAGATCTTGGAC+AGG | - | chr4_1:45427333-45427352 | None:intergenic | 35.0% |
| ! | TCATAACTTGCATATTGACC+AGG | + | chr4_1:45427464-45427483 | Msa0550020:intron | 35.0% |
| GGCAGATTACATATTGAAAG+TGG | + | chr4_1:45427563-45427582 | Msa0550020:CDS | 35.0% | |
| TGTCTAATTTCAGGAATGCA+TGG | + | chr4_1:45427589-45427608 | Msa0550020:CDS | 35.0% | |
| GTCTAATTTCAGGAATGCAT+GGG | + | chr4_1:45427590-45427609 | Msa0550020:CDS | 35.0% | |
| GATGACAGTATTTACAGCTT+CGG | - | chr4_1:45427679-45427698 | None:intergenic | 35.0% | |
| AATACTGTCATCACTCTTCT+TGG | + | chr4_1:45427687-45427706 | Msa0550020:CDS | 35.0% | |
| ATGAAGTAGAAGAGATTCTC+TGG | + | chr4_1:45428204-45428223 | Msa0550020:intron | 35.0% | |
| ! | GTAAGACATTTCTTTTCCCA+TGG | + | chr4_1:45428237-45428256 | Msa0550020:intron | 35.0% |
| ACCCGATTTAAGAGTTTCTT+AGG | + | chr4_1:45428465-45428484 | Msa0550020:intron | 35.0% | |
| TGGATTTCTCTTTCACTTCA+TGG | + | chr4_1:45428503-45428522 | Msa0550020:intron | 35.0% | |
| ATGTCATTGCTAACATCATC+TGG | + | chr4_1:45428550-45428569 | Msa0550020:intron | 35.0% | |
| GTAATACAACCGTATCTTCT+AGG | + | chr4_1:45428680-45428699 | Msa0550020:intron | 35.0% | |
| TATTGCCTTCCTAGAAGATA+CGG | - | chr4_1:45428692-45428711 | None:intergenic | 35.0% | |
| TTATTGTCGGGTGTATACAT+AGG | + | chr4_1:45428788-45428807 | Msa0550020:CDS | 35.0% | |
| TATTGTCGGGTGTATACATA+GGG | + | chr4_1:45428789-45428808 | Msa0550020:CDS | 35.0% | |
| AAAGGATGTTGCAATGAAAC+TGG | + | chr4_1:45428856-45428875 | Msa0550020:CDS | 35.0% | |
| !! | CAAGATATGTTGACTCAATG+CGG | + | chr4_1:45428953-45428972 | Msa0550020:three_prime_UTR | 35.0% |
| ! | TGCGGCCTAAATTTGTATTT+TGG | + | chr4_1:45428971-45428990 | Msa0550020:three_prime_UTR | 35.0% |
| AAAGAATTGCAACTTTGGCT+TGG | + | chr4_1:45429031-45429050 | Msa0550020:three_prime_UTR | 35.0% | |
| !! | AATACCCAGAAGTATCATGT+CGG | + | chr4_1:45429107-45429126 | Msa0550020:three_prime_UTR | 35.0% |
| !! | AAATTTACACTGGTTCGTTC+AGG | + | chr4_1:45429328-45429347 | Msa0550020:three_prime_UTR | 35.0% |
| !! | AATTTACACTGGTTCGTTCA+GGG | + | chr4_1:45429329-45429348 | Msa0550020:three_prime_UTR | 35.0% |
| ! | TTTGTATAGGTGCTTTTGCG+AGG | - | chr4_1:45421966-45421985 | None:intergenic | 40.0% |
| ATGAATTACCTTCGTCGTCA+CGG | - | chr4_1:45422069-45422088 | None:intergenic | 40.0% | |
| TTCTATTGAGGAATGCGGTA+CGG | + | chr4_1:45422177-45422196 | Msa0550020:intron | 40.0% | |
| AAGCAATTGCACCTTACGAA+CGG | - | chr4_1:45422504-45422523 | None:intergenic | 40.0% | |
| !! | CCCGTTTTTGGGAATTGAAA+AGG | + | chr4_1:45422708-45422727 | Msa0550020:CDS | 40.0% |
| ATGATCCACAACTAGATGCT+AGG | + | chr4_1:45422761-45422780 | Msa0550020:CDS | 40.0% | |
| TAGCAGACACTTCTGATTGA+TGG | - | chr4_1:45422972-45422991 | None:intergenic | 40.0% | |
| !! | ATCAGAAGTGTCTGCTACAT+AGG | + | chr4_1:45422975-45422994 | Msa0550020:intron | 40.0% |
| !! | GTGCGTGTTTAACTTTTTCC+AGG | + | chr4_1:45423026-45423045 | Msa0550020:intron | 40.0% |
| TCAGGGAGAGACATTTACAA+AGG | + | chr4_1:45423077-45423096 | Msa0550020:intron | 40.0% | |
| ATCTCGAGATTGGAAAAGCT+TGG | - | chr4_1:45423260-45423279 | None:intergenic | 40.0% | |
| ! | CTTTTCCAATCTCGAGATCT+TGG | + | chr4_1:45423262-45423281 | Msa0550020:CDS | 40.0% |
| TTAACCCAAGATCTCGAGAT+TGG | - | chr4_1:45423270-45423289 | None:intergenic | 40.0% | |
| AATCTCGAGATCTTGGGTTA+AGG | + | chr4_1:45423269-45423288 | Msa0550020:CDS | 40.0% | |
| AGATCTTGGGTTAAGGAGAA+TGG | + | chr4_1:45423276-45423295 | Msa0550020:CDS | 40.0% | |
| TTTATAACCTCGTCTGCAGA+GGG | - | chr4_1:45423328-45423347 | None:intergenic | 40.0% | |
| ATTTATAACCTCGTCTGCAG+AGG | - | chr4_1:45423329-45423348 | None:intergenic | 40.0% | |
| TAGTGGTATTCATCTACTCC+AGG | + | chr4_1:45423649-45423668 | Msa0550020:CDS | 40.0% | |
| TCAGGATTTGTCTGAAAGTG+GGG | - | chr4_1:45423750-45423769 | None:intergenic | 40.0% | |
| CTCAGGATTTGTCTGAAAGT+GGG | - | chr4_1:45423751-45423770 | None:intergenic | 40.0% | |
| TCTCAGGATTTGTCTGAAAG+TGG | - | chr4_1:45423752-45423771 | None:intergenic | 40.0% | |
| ! | CTCCACCTTTTTACAATCTC+AGG | - | chr4_1:45423768-45423787 | None:intergenic | 40.0% |
| TGTAAAAAGGTGGAGCAATG+AGG | + | chr4_1:45423773-45423792 | Msa0550020:CDS | 40.0% | |
| ! | ATCACTGACGACAGAGTTTT+AGG | - | chr4_1:45423930-45423949 | None:intergenic | 40.0% |
| TTTGGAAAATGGAGGTGACA+GGG | - | chr4_1:45424156-45424175 | None:intergenic | 40.0% | |
| ATTTGGAAAATGGAGGTGAC+AGG | - | chr4_1:45424157-45424176 | None:intergenic | 40.0% | |
| ! | CTACAGCTGCAATTGATAAC+TGG | + | chr4_1:45424460-45424479 | Msa0550020:intron | 40.0% |
| ! | CAATGTGTCATTGATAGGAG+AGG | - | chr4_1:45424586-45424605 | None:intergenic | 40.0% |
| !! | GTAACGGATCAAGAGACATT+GGG | - | chr4_1:45424776-45424795 | None:intergenic | 40.0% |
| !! | TGTAACGGATCAAGAGACAT+TGG | - | chr4_1:45424777-45424796 | None:intergenic | 40.0% |
| ! | AACACACCTGACTTGTGTAA+CGG | - | chr4_1:45424792-45424811 | None:intergenic | 40.0% |
| TTCAAATGAATAGCCTCCCA+GGG | - | chr4_1:45424836-45424855 | None:intergenic | 40.0% | |
| ATTCAAATGAATAGCCTCCC+AGG | - | chr4_1:45424837-45424856 | None:intergenic | 40.0% | |
| !!! | GGTGATTTTTGAAGCTGCTA+AGG | + | chr4_1:45424973-45424992 | Msa0550020:CDS | 40.0% |
| !! | ATACTGGCTTGGAAGAACTT+AGG | - | chr4_1:45425066-45425085 | None:intergenic | 40.0% |
| ! | AGCAAATCTCAATACTGGCT+TGG | - | chr4_1:45425077-45425096 | None:intergenic | 40.0% |
| ACAGCAGCAAATCTCAATAC+TGG | - | chr4_1:45425082-45425101 | None:intergenic | 40.0% | |
| GAGAATGTCAACCTTGTTCA+AGG | - | chr4_1:45425110-45425129 | None:intergenic | 40.0% | |
| !! | TATGTTGATTCTCTCCCTTC+TGG | + | chr4_1:45425166-45425185 | Msa0550020:intron | 40.0% |
| !!! | AGTGTGGTTTTGAACTTTGC+AGG | + | chr4_1:45425317-45425336 | Msa0550020:intron | 40.0% |
| CTTCCCTAAGAATGTTACTC+AGG | - | chr4_1:45425717-45425736 | None:intergenic | 40.0% | |
| AACATTCTTAGGGAAGAAGG+TGG | + | chr4_1:45425721-45425740 | Msa0550020:CDS | 40.0% | |
| TAGAGATATCCCTGATGCTA+AGG | + | chr4_1:45425789-45425808 | Msa0550020:CDS | 40.0% | |
| ! | AATTTATCACCTGTGTCGAC+AGG | - | chr4_1:45425867-45425886 | None:intergenic | 40.0% |
| ! | TGGAGTATCTAAGGTACAAG+GGG | - | chr4_1:45425951-45425970 | None:intergenic | 40.0% |
| ! | GTGGAGTATCTAAGGTACAA+GGG | - | chr4_1:45425952-45425971 | None:intergenic | 40.0% |
| ! | AGTGGAGTATCTAAGGTACA+AGG | - | chr4_1:45425953-45425972 | None:intergenic | 40.0% |
| !! | TTTTTGGTCCTTCAATGCCA+AGG | - | chr4_1:45425977-45425996 | None:intergenic | 40.0% |
| TGGACCCCAGCAAATATATT+CGG | + | chr4_1:45426000-45426019 | Msa0550020:CDS | 40.0% | |
| ATCTCGAGAATGCAACTGTT+AGG | + | chr4_1:45426042-45426061 | Msa0550020:CDS | 40.0% | |
| TCTCGAGAATGCAACTGTTA+GGG | + | chr4_1:45426043-45426062 | Msa0550020:CDS | 40.0% | |
| CTTAGCAGAACAAATATGCG+GGG | - | chr4_1:45426226-45426245 | None:intergenic | 40.0% | |
| CCTTAGCAGAACAAATATGC+GGG | - | chr4_1:45426227-45426246 | None:intergenic | 40.0% | |
| GCCTTAGCAGAACAAATATG+CGG | - | chr4_1:45426228-45426247 | None:intergenic | 40.0% | |
| !! | TCTTTTTGACAGTGATGACG+AGG | + | chr4_1:45426252-45426271 | Msa0550020:CDS | 40.0% |
| ! | TGTGGTTCCTACGATTTTCA+AGG | + | chr4_1:45426315-45426334 | Msa0550020:intron | 40.0% |
| CTGAGATTGATAAAGATGCG+AGG | + | chr4_1:45426450-45426469 | Msa0550020:CDS | 40.0% | |
| !! | TGACATTAATTTGGTGCCCA+AGG | + | chr4_1:45426630-45426649 | Msa0550020:CDS | 40.0% |
| TAAAAAGCCAACTGGTGGTT+TGG | + | chr4_1:45426693-45426712 | Msa0550020:CDS | 40.0% | |
| AAAAAGCCAACTGGTGGTTT+GGG | + | chr4_1:45426694-45426713 | Msa0550020:CDS | 40.0% | |
| ATATGAATCCACAGTGGATG+GGG | - | chr4_1:45426737-45426756 | None:intergenic | 40.0% | |
| CATATGAATCCACAGTGGAT+GGG | - | chr4_1:45426738-45426757 | None:intergenic | 40.0% | |
| TCATATGAATCCACAGTGGA+TGG | - | chr4_1:45426739-45426758 | None:intergenic | 40.0% | |
| CCTTTCATATGAATCCACAG+TGG | - | chr4_1:45426743-45426762 | None:intergenic | 40.0% | |
| CCACTGTGGATTCATATGAA+AGG | + | chr4_1:45426740-45426759 | Msa0550020:CDS | 40.0% | |
| TTCCCAAAGTTTGCAAACTC+AGG | - | chr4_1:45426781-45426800 | None:intergenic | 40.0% | |
| CACAATACCCGAACAACTAT+TGG | + | chr4_1:45427019-45427038 | Msa0550020:CDS | 40.0% | |
| CATCCACAACTACAATAACC+TGG | - | chr4_1:45427128-45427147 | None:intergenic | 40.0% | |
| TCTCTTCCTTATGATTCACC+TGG | + | chr4_1:45427195-45427214 | Msa0550020:CDS | 40.0% | |
| CTCTTCCTTATGATTCACCT+GGG | + | chr4_1:45427196-45427215 | Msa0550020:CDS | 40.0% | |
| GACAGGAAAACCACAAACAA+AGG | - | chr4_1:45427316-45427335 | None:intergenic | 40.0% | |
| TCTGAACGAGTGGATGAATA+CGG | + | chr4_1:45427630-45427649 | Msa0550020:CDS | 40.0% | |
| TAAGCCAATGATGTCAGTTG+TGG | + | chr4_1:45427727-45427746 | Msa0550020:intron | 40.0% | |
| ATTACTGCAACTGCAACATG+AGG | + | chr4_1:45427815-45427834 | Msa0550020:intron | 40.0% | |
| CTGGAAAGAATCTAATTGGG+AGG | - | chr4_1:45427847-45427866 | None:intergenic | 40.0% | |
| ! | TTTTGCTCTCCAATAAGGCA+TGG | - | chr4_1:45427931-45427950 | None:intergenic | 40.0% |
| ! | TTGGGTTTTGCTCTCCAATA+AGG | - | chr4_1:45427936-45427955 | None:intergenic | 40.0% |
| TTAAAAGGAACTAAGCGGAC+TGG | - | chr4_1:45428040-45428059 | None:intergenic | 40.0% | |
| ATTGCTAAACTCAAGCCACA+AGG | + | chr4_1:45428084-45428103 | Msa0550020:intron | 40.0% | |
| TTGCATCTATAACCTCGTTG+TGG | - | chr4_1:45428413-45428432 | None:intergenic | 40.0% | |
| TCAATGGTCTATGCTTACAC+AGG | - | chr4_1:45428443-45428462 | None:intergenic | 40.0% | |
| CTCTTAAATCGGGTTCTCAA+TGG | - | chr4_1:45428459-45428478 | None:intergenic | 40.0% | |
| TTAGGTTCTCGTGAGAGTAA+TGG | + | chr4_1:45428483-45428502 | Msa0550020:intron | 40.0% | |
| AGCCAATACTTTATCTCGAG+TGG | - | chr4_1:45428529-45428548 | None:intergenic | 40.0% | |
| ! | TACAACCGTATCTTCTAGGA+AGG | + | chr4_1:45428684-45428703 | Msa0550020:intron | 40.0% |
| TGTGTGACCTTGAATTAGGT+GGG | - | chr4_1:45428763-45428782 | None:intergenic | 40.0% | |
| CATGTGTGTGACCTTGAATT+AGG | - | chr4_1:45428767-45428786 | None:intergenic | 40.0% | |
| GTCACACACATGCTTATTGT+CGG | + | chr4_1:45428775-45428794 | Msa0550020:CDS | 40.0% | |
| TCACACACATGCTTATTGTC+GGG | + | chr4_1:45428776-45428795 | Msa0550020:CDS | 40.0% | |
| ATTGTCGGGTGTATACATAG+GGG | + | chr4_1:45428790-45428809 | Msa0550020:CDS | 40.0% | |
| !!! | TTTTGGACTTGATGGTGCAA+AGG | + | chr4_1:45428838-45428857 | Msa0550020:CDS | 40.0% |
| AGTTAAACAGCCACATAGCT+AGG | + | chr4_1:45429001-45429020 | Msa0550020:three_prime_UTR | 40.0% | |
| TTTACACACACCTAGCTATG+TGG | - | chr4_1:45429014-45429033 | None:intergenic | 40.0% | |
| ! | TGACAAGAAGTATGCAGTGA+GGG | - | chr4_1:45429075-45429094 | None:intergenic | 40.0% |
| !! | ATACCCAGAAGTATCATGTC+GGG | + | chr4_1:45429108-45429127 | Msa0550020:three_prime_UTR | 40.0% |
| AAACCCGACATGATACTTCT+GGG | - | chr4_1:45429114-45429133 | None:intergenic | 40.0% | |
| TAAACCCGACATGATACTTC+TGG | - | chr4_1:45429115-45429134 | None:intergenic | 40.0% | |
| CATCTCCTAGCATCTAGTTG+TGG | - | chr4_1:45422769-45422788 | None:intergenic | 45.0% | |
| AGATGCTAGGAGATGTTCAC+AGG | + | chr4_1:45422774-45422793 | Msa0550020:CDS | 45.0% | |
| CGGATACCAACATGAGTTGT+CGG | + | chr4_1:45422934-45422953 | Msa0550020:intron | 45.0% | |
| !! | CTTCTGATTGATGGTGTGTC+CGG | - | chr4_1:45422963-45422982 | None:intergenic | 45.0% |
| ATGTCTCTCCCTGATTCAGT+AGG | - | chr4_1:45423071-45423090 | None:intergenic | 45.0% | |
| TTATAACCTCGTCTGCAGAG+GGG | - | chr4_1:45423327-45423346 | None:intergenic | 45.0% | |
| ATGCCATTCGTGTGCTTTGT+CGG | + | chr4_1:45423534-45423553 | Msa0550020:CDS | 45.0% | |
| CCTCTCAATTTGGGTAAGGA+GGG | - | chr4_1:45423573-45423592 | None:intergenic | 45.0% | |
| ACCTCTCAATTTGGGTAAGG+AGG | - | chr4_1:45423574-45423593 | None:intergenic | 45.0% | |
| GAATCCAGTTGTTGCAAGTG+CGG | + | chr4_1:45423619-45423638 | Msa0550020:CDS | 45.0% | |
| CAGGATTTGTCTGAAAGTGG+GGG | - | chr4_1:45423749-45423768 | None:intergenic | 45.0% | |
| TCTTGTACAATTTCACGCGC+TGG | + | chr4_1:45423824-45423843 | Msa0550020:CDS | 45.0% | |
| AAGCTTAAGCTGTCCACTGA+AGG | - | chr4_1:45424221-45424240 | None:intergenic | 45.0% | |
| TCGACTAGCAGTTAGCAAAC+TGG | + | chr4_1:45424711-45424730 | Msa0550020:CDS | 45.0% | |
| AACTGGTTACCAGCTTGACA+AGG | + | chr4_1:45424728-45424747 | Msa0550020:CDS | 45.0% | |
| ACTGGTTACCAGCTTGACAA+GGG | + | chr4_1:45424729-45424748 | Msa0550020:CDS | 45.0% | |
| ATCAAGAGACATTGGGCCAA+AGG | - | chr4_1:45424769-45424788 | None:intergenic | 45.0% | |
| CTTGATCCGTTACACAAGTC+AGG | + | chr4_1:45424783-45424802 | Msa0550020:CDS | 45.0% | |
| CTTATATAGTTGTCCCTGGG+AGG | + | chr4_1:45424820-45424839 | Msa0550020:intron | 45.0% | |
| ! | CTCGGCTAGTTACACCATTA+AGG | - | chr4_1:45425009-45425028 | None:intergenic | 45.0% |
| AGCTGAAGAACAGTGATTGC+TGG | - | chr4_1:45425040-45425059 | None:intergenic | 45.0% | |
| TGTCAACCTTGTTCAAGGTG+CGG | - | chr4_1:45425105-45425124 | None:intergenic | 45.0% | |
| !!! | GTGGTTTTGAACTTTGCAGG+TGG | + | chr4_1:45425320-45425339 | Msa0550020:intron | 45.0% |
| GACAGGAAATGAATCAAGCG+TGG | + | chr4_1:45425449-45425468 | Msa0550020:CDS | 45.0% | |
| ATCCCTGATGCTAAGGAAAG+TGG | + | chr4_1:45425796-45425815 | Msa0550020:CDS | 45.0% | |
| TCCCTGATGCTAAGGAAAGT+GGG | + | chr4_1:45425797-45425816 | Msa0550020:CDS | 45.0% | |
| ACCCACTTTCCTTAGCATCA+GGG | - | chr4_1:45425801-45425820 | None:intergenic | 45.0% | |
| AACCCACTTTCCTTAGCATC+AGG | - | chr4_1:45425802-45425821 | None:intergenic | 45.0% | |
| ATTCACTTACCTGTCGACAC+AGG | + | chr4_1:45425855-45425874 | Msa0550020:CDS | 45.0% | |
| ! | CCAAGGAAGTGGAGTATCTA+AGG | - | chr4_1:45425960-45425979 | None:intergenic | 45.0% |
| CCTTAGATACTCCACTTCCT+TGG | + | chr4_1:45425957-45425976 | Msa0550020:intron | 45.0% | |
| ! | TTGCTGGGGTCCAATGTTTT+TGG | - | chr4_1:45425993-45426012 | None:intergenic | 45.0% |
| GTGAGCACACTAGCCAAATT+TGG | + | chr4_1:45426074-45426093 | Msa0550020:CDS | 45.0% | |
| CCCGCATATTTGTTCTGCTA+AGG | + | chr4_1:45426224-45426243 | Msa0550020:CDS | 45.0% | |
| CATGTTTCCTCTTTGACTGC+AGG | + | chr4_1:45426588-45426607 | Msa0550020:intron | 45.0% | |
| ATGTCAAAAGCCTCTTCCGA+AGG | - | chr4_1:45426616-45426635 | None:intergenic | 45.0% | |
| !! | CATTAATTTGGTGCCCAAGG+AGG | + | chr4_1:45426633-45426652 | Msa0550020:CDS | 45.0% |
| TTTACCAGGGGCTTTCTTCT+CGG | - | chr4_1:45426677-45426696 | None:intergenic | 45.0% | |
| !!! | ACCAGTTGGCTTTTTACCAG+GGG | - | chr4_1:45426689-45426708 | None:intergenic | 45.0% |
| !!! | CACCAGTTGGCTTTTTACCA+GGG | - | chr4_1:45426690-45426709 | None:intergenic | 45.0% |
| TATGAATCCACAGTGGATGG+GGG | - | chr4_1:45426736-45426755 | None:intergenic | 45.0% | |
| CGTTGAAGATGAATACCAGC+TGG | + | chr4_1:45427521-45427540 | Msa0550020:CDS | 45.0% | |
| TGAAGATGAATACCAGCTGG+AGG | + | chr4_1:45427524-45427543 | Msa0550020:CDS | 45.0% | |
| !! | AAGTGGGGGTGTCTAATTTC+AGG | + | chr4_1:45427580-45427599 | Msa0550020:CDS | 45.0% |
| CATCCACTCGTTCAGAATCA+GGG | - | chr4_1:45427626-45427645 | None:intergenic | 45.0% | |
| TCATCCACTCGTTCAGAATC+AGG | - | chr4_1:45427627-45427646 | None:intergenic | 45.0% | |
| !! | CATCATTGGCTTACCTCACA+AGG | - | chr4_1:45427720-45427739 | None:intergenic | 45.0% |
| GAAGCCACAACTGACATCAT+TGG | - | chr4_1:45427734-45427753 | None:intergenic | 45.0% | |
| GAAAGTGAACGCCAACGTTT+GGG | - | chr4_1:45427954-45427973 | None:intergenic | 45.0% | |
| AGAAAGTGAACGCCAACGTT+TGG | - | chr4_1:45427955-45427974 | None:intergenic | 45.0% | |
| AAGAGATTCTCTGGTGCTTC+AGG | + | chr4_1:45428213-45428232 | Msa0550020:intron | 45.0% | |
| GGGATTGATCTTTGAGCCAT+GGG | - | chr4_1:45428256-45428275 | None:intergenic | 45.0% | |
| TGGGATTGATCTTTGAGCCA+TGG | - | chr4_1:45428257-45428276 | None:intergenic | 45.0% | |
| TCTATAACCTCGTTGTGGCA+GGG | - | chr4_1:45428408-45428427 | None:intergenic | 45.0% | |
| ATCTATAACCTCGTTGTGGC+AGG | - | chr4_1:45428409-45428428 | None:intergenic | 45.0% | |
| GGCCACTCGAGATAAAGTAT+TGG | + | chr4_1:45428524-45428543 | Msa0550020:intron | 45.0% | |
| ! | TGCTAACATCATCTGGAACC+TGG | + | chr4_1:45428557-45428576 | Msa0550020:intron | 45.0% |
| ! | GTTCTTTGGTGGTACTAGCA+TGG | - | chr4_1:45428609-45428628 | None:intergenic | 45.0% |
| GTGTGTGACCTTGAATTAGG+TGG | - | chr4_1:45428764-45428783 | None:intergenic | 45.0% | |
| TTGTCGGGTGTATACATAGG+GGG | + | chr4_1:45428791-45428810 | Msa0550020:CDS | 45.0% | |
| ! | TGTATACATAGGGGGTGTGA+AGG | + | chr4_1:45428799-45428818 | Msa0550020:CDS | 45.0% |
| TGATGCCATCCATGAGATTG+TGG | + | chr4_1:45428907-45428926 | Msa0550020:CDS | 45.0% | |
| ATCCATGAGATTGTGGCAAG+CGG | + | chr4_1:45428914-45428933 | Msa0550020:CDS | 45.0% | |
| ! | CTGACAAGAAGTATGCAGTG+AGG | - | chr4_1:45429076-45429095 | None:intergenic | 45.0% |
| ! | ACTTCTGGGTATTGTTGCTG+AGG | - | chr4_1:45429100-45429119 | None:intergenic | 45.0% |
| !! | AGAAAATAATTAATAAATAA+AGG | - | chr4_1:45426131-45426150 | None:intergenic | 5.0% |
| GGTGGTGAATCTGTGAGATC+TGG | - | chr4_1:45422004-45422023 | None:intergenic | 50.0% | |
| CACAGATTCACCACCTTCTC+CGG | + | chr4_1:45422009-45422028 | Msa0550020:five_prime_UTR | 50.0% | |
| TTCGCGTAGATCACGATGCT+TGG | + | chr4_1:45422200-45422219 | Msa0550020:intron | 50.0% | |
| ACTTCGGTTAGGACTCAAGC+TGG | + | chr4_1:45422601-45422620 | Msa0550020:intron | 50.0% | |
| AAAGGGGGCTGTTCTTCAAG+AGG | + | chr4_1:45422726-45422745 | Msa0550020:CDS | 50.0% | |
| GTGCTGTGTCAGTGCTTCAT+TGG | - | chr4_1:45422849-45422868 | None:intergenic | 50.0% | |
| CAACATGAGTTGTCGGACTC+CGG | + | chr4_1:45422941-45422960 | Msa0550020:intron | 50.0% | |
| TATAACCTCGTCTGCAGAGG+GGG | - | chr4_1:45423326-45423345 | None:intergenic | 50.0% | |
| GATCCGACAAAGCACACGAA+TGG | - | chr4_1:45423540-45423559 | None:intergenic | 50.0% | |
| TCGTGTGCTTTGTCGGATCA+CGG | + | chr4_1:45423541-45423560 | Msa0550020:CDS | 50.0% | |
| CCCTCCTTACCCAAATTGAG+AGG | + | chr4_1:45423570-45423589 | Msa0550020:CDS | 50.0% | |
| AAGGTGGAGCAATGAGGTTC+AGG | + | chr4_1:45423779-45423798 | Msa0550020:CDS | 50.0% | |
| CTGGTTACCAGCTTGACAAG+GGG | + | chr4_1:45424730-45424749 | Msa0550020:CDS | 50.0% | |
| AACACTTCCCCTTGTCAAGC+TGG | - | chr4_1:45424740-45424759 | None:intergenic | 50.0% | |
| CCATTTCGGACTTGTGACGA+AGG | - | chr4_1:45424955-45424974 | None:intergenic | 50.0% | |
| CCTTCGTCACAAGTCCGAAA+TGG | + | chr4_1:45424952-45424971 | Msa0550020:CDS | 50.0% | |
| ! | GTTGATTCTCTCCCTTCTGG+AGG | + | chr4_1:45425169-45425188 | Msa0550020:intron | 50.0% |
| AGCAAAATGCGCCTCCAGAA+GGG | - | chr4_1:45425183-45425202 | None:intergenic | 50.0% | |
| AAGCAAAATGCGCCTCCAGA+AGG | - | chr4_1:45425184-45425203 | None:intergenic | 50.0% | |
| GGTGGCAATGACACATCCAA+TGG | + | chr4_1:45425338-45425357 | Msa0550020:intron | 50.0% | |
| TTGCAGTTAGTGACGGCCAT+TGG | - | chr4_1:45425357-45425376 | None:intergenic | 50.0% | |
| GTGTGGCAATGCTTCTGTTC+TGG | - | chr4_1:45425407-45425426 | None:intergenic | 50.0% | |
| ! | CTCCACTTCCTTGGCATTGA+AGG | + | chr4_1:45425966-45425985 | Msa0550020:CDS | 50.0% |
| GTCCTTCAATGCCAAGGAAG+TGG | - | chr4_1:45425971-45425990 | None:intergenic | 50.0% | |
| GGATATCAAGTGAGCCGAAG+AGG | - | chr4_1:45426481-45426500 | None:intergenic | 50.0% | |
| TGATATCCCGCTCGTCAATC+TGG | + | chr4_1:45426493-45426512 | Msa0550020:CDS | 50.0% | |
| TCTTTGACTGCAGGAGCCTT+CGG | + | chr4_1:45426597-45426616 | Msa0550020:intron | 50.0% | |
| !!! | CCACCAGTTGGCTTTTTACC+AGG | - | chr4_1:45426691-45426710 | None:intergenic | 50.0% |
| CCTGGTAAAAAGCCAACTGG+TGG | + | chr4_1:45426688-45426707 | Msa0550020:CDS | 50.0% | |
| TCTGCTTCAGTAAGCTCCAC+AGG | - | chr4_1:45426927-45426946 | None:intergenic | 50.0% | |
| AGGAAGAGATCTTAGGGGTG+TGG | - | chr4_1:45427184-45427203 | None:intergenic | 50.0% | |
| GTCTGCCCAGGTGAATCATA+AGG | - | chr4_1:45427204-45427223 | None:intergenic | 50.0% | |
| ! | TTCACCTGGGCAGACTTTTG+TGG | + | chr4_1:45427209-45427228 | Msa0550020:CDS | 50.0% |
| ATACCAGCTGGAGGATCTAG+AGG | + | chr4_1:45427533-45427552 | Msa0550020:CDS | 50.0% | |
| GGAGGATCTAGAGGTTGTTG+CGG | + | chr4_1:45427542-45427561 | Msa0550020:CDS | 50.0% | |
| CAGGAATGCATGGGAAAGCA+TGG | + | chr4_1:45427599-45427618 | Msa0550020:CDS | 50.0% | |
| CGAGTGGATGAATACGGTCT+TGG | + | chr4_1:45427636-45427655 | Msa0550020:CDS | 50.0% | |
| ATGAATACGGTCTTGGCCCA+AGG | + | chr4_1:45427643-45427662 | Msa0550020:CDS | 50.0% | |
| TGAATACGGTCTTGGCCCAA+GGG | + | chr4_1:45427644-45427663 | Msa0550020:CDS | 50.0% | |
| TCTTGGCATGCAACCTTGTG+AGG | + | chr4_1:45427704-45427723 | Msa0550020:CDS | 50.0% | |
| GGAGAGCAAAACCCAAACGT+TGG | + | chr4_1:45427940-45427959 | Msa0550020:intron | 50.0% | |
| GTGAACATGTGCTTGCACAC+AGG | + | chr4_1:45428165-45428184 | Msa0550020:intron | 50.0% | |
| AGGTCGTCCCACCTAATTCA+AGG | + | chr4_1:45428753-45428772 | Msa0550020:CDS | 50.0% | |
| ! | GTACTTGTGCGGCTGTCTTT+TGG | + | chr4_1:45428821-45428840 | Msa0550020:CDS | 50.0% |
| ! | CGGCTGTCTTTTGGACTTGA+TGG | + | chr4_1:45428830-45428849 | Msa0550020:CDS | 50.0% |
| GCTTGCCACAATCTCATGGA+TGG | - | chr4_1:45428915-45428934 | None:intergenic | 50.0% | |
| AACCGCTTGCCACAATCTCA+TGG | - | chr4_1:45428919-45428938 | None:intergenic | 50.0% | |
| CAGCACAACACAGTCGACAC+TGG | + | chr4_1:45422863-45422882 | Msa0550020:intron | 55.0% | |
| CGGAGTCCGACAACTCATGT+TGG | - | chr4_1:45422943-45422962 | None:intergenic | 55.0% | |
| CGTCACGAGCTCTCTCATGA+AGG | + | chr4_1:45423478-45423497 | Msa0550020:CDS | 55.0% | |
| GTGCTTTGTCGGATCACGGA+TGG | + | chr4_1:45423545-45423564 | Msa0550020:CDS | 55.0% | |
| !! | GGGAAGTGTTCGCTCACCTT+TGG | + | chr4_1:45424750-45424769 | Msa0550020:CDS | 55.0% |
| CTGCAGGTTATTCGCGAGTC+AGG | + | chr4_1:45424878-45424897 | Msa0550020:intron | 55.0% | |
| TGCTGTCCGCACCTTGAACA+AGG | + | chr4_1:45425096-45425115 | Msa0550020:CDS | 55.0% | |
| GATGCGAGGGACTTCCTCTT+CGG | + | chr4_1:45426464-45426483 | Msa0550020:CDS | 55.0% | |
| TGGTCTCCAGATTGACGAGC+GGG | - | chr4_1:45426502-45426521 | None:intergenic | 55.0% | |
| CTGGTCTCCAGATTGACGAG+CGG | - | chr4_1:45426503-45426522 | None:intergenic | 55.0% | |
| GAAGGCTCCTGCAGTCAAAG+AGG | - | chr4_1:45426598-45426617 | None:intergenic | 55.0% | |
| GGCTGAGACTTGACCTCCTT+GGG | - | chr4_1:45426649-45426668 | None:intergenic | 55.0% | |
| AGGCTGAGACTTGACCTCCT+TGG | - | chr4_1:45426650-45426669 | None:intergenic | 55.0% | |
| GCCCCTGGTAAAAAGCCAAC+TGG | + | chr4_1:45426685-45426704 | Msa0550020:CDS | 55.0% | |
| GTTTGGGTGCTCCTCCTAGT+GGG | + | chr4_1:45426710-45426729 | Msa0550020:CDS | 55.0% | |
| TTACCAGTCCTCAGCACCTG+TGG | + | chr4_1:45426908-45426927 | Msa0550020:intron | 55.0% | |
| ! | AGTAAGCTCCACAGGTGCTG+AGG | - | chr4_1:45426919-45426938 | None:intergenic | 55.0% |
| AACGCCACAAAAGTCTGCCC+AGG | - | chr4_1:45427216-45427235 | None:intergenic | 55.0% | |
| TGTGGCGTTTGAGAAGCCTG+AGG | + | chr4_1:45427227-45427246 | Msa0550020:CDS | 55.0% | |
| GTGGCGTTTGAGAAGCCTGA+GGG | + | chr4_1:45427228-45427247 | Msa0550020:CDS | 55.0% | |
| CCAGATGTTGGCAATCCCTC+AGG | - | chr4_1:45427246-45427265 | None:intergenic | 55.0% | |
| CCTGAGGGATTGCCAACATC+TGG | + | chr4_1:45427243-45427262 | Msa0550020:CDS | 55.0% | |
| ATCATCTTCAGCCTCGCCAG+AGG | - | chr4_1:45427499-45427518 | None:intergenic | 55.0% | |
| TCTGGCGAGGCTGAAGATGA+TGG | + | chr4_1:45427498-45427517 | Msa0550020:CDS | 55.0% | |
| CAACCTCTAGATCCTCCAGC+TGG | - | chr4_1:45427539-45427558 | None:intergenic | 55.0% | |
| GGACCCTGATTCTGAACGAG+TGG | + | chr4_1:45427620-45427639 | Msa0550020:CDS | 55.0% | |
| CTTCGGACAAGCCTTCCCTT+GGG | - | chr4_1:45427662-45427681 | None:intergenic | 55.0% | |
| GTCAAATCCCTGCCACAACG+AGG | + | chr4_1:45428398-45428417 | Msa0550020:intron | 55.0% | |
| TCACTACTTGCAGGGCACAG+AGG | + | chr4_1:45428733-45428752 | Msa0550020:intron | 55.0% | |
| !! | GGGGTGTGAAGGTACTTGTG+CGG | + | chr4_1:45428810-45428829 | Msa0550020:CDS | 55.0% |
| TTCACCACCTTCTCCGGCGA+TGG | + | chr4_1:45422015-45422034 | Msa0550020:exon | 60.0% | |
| ATAAGCGGCTGAGCCATCGC+CGG | - | chr4_1:45422031-45422050 | None:intergenic | 60.0% | |
| GACGATGACCGTGACGACGA+AGG | + | chr4_1:45422058-45422077 | Msa0550020:CDS | 60.0% | |
| GGGCTGTTCTTCAAGAGGCC+CGG | + | chr4_1:45422731-45422750 | Msa0550020:CDS | 60.0% | |
| GGCTGTTCTTCAAGAGGCCC+GGG | + | chr4_1:45422732-45422751 | Msa0550020:CDS | 60.0% | |
| ACTTTCCCCCTCTGCAGACG+AGG | + | chr4_1:45423318-45423337 | Msa0550020:CDS | 60.0% | |
| AGGGCCGCACTTGCAACAAC+TGG | - | chr4_1:45423626-45423645 | None:intergenic | 60.0% | |
| GCAAGTGCGGCCCTAGTTAG+TGG | + | chr4_1:45423632-45423651 | Msa0550020:CDS | 60.0% | |
| !! | CGCGCTGGCTTTGCTACATC+AGG | + | chr4_1:45423839-45423858 | Msa0550020:CDS | 60.0% |
| GGCTAGTGTGCTCACAGCAC+TGG | - | chr4_1:45426069-45426088 | None:intergenic | 60.0% | |
| ACTGCAGGAGCCTTCGGAAG+AGG | + | chr4_1:45426603-45426622 | Msa0550020:intron | 60.0% | |
| GGGGCTTTCTTCTCGGCAAG+AGG | - | chr4_1:45426670-45426689 | None:intergenic | 60.0% | |
| CTTGCCGAGAAGAAAGCCCC+TGG | + | chr4_1:45426670-45426689 | Msa0550020:CDS | 60.0% | |
| ! | GGAGCACCCAAACCACCAGT+TGG | - | chr4_1:45426703-45426722 | None:intergenic | 60.0% |
| GGTTTGGGTGCTCCTCCTAG+TGG | + | chr4_1:45426709-45426728 | Msa0550020:CDS | 60.0% | |
| ! | GACCAGGTTGACCCAACCTC+TGG | + | chr4_1:45427480-45427499 | Msa0550020:intron | 60.0% |
| CTTCAGCCTCGCCAGAGGTT+GGG | - | chr4_1:45427494-45427513 | None:intergenic | 60.0% | |
| TCTTCAGCCTCGCCAGAGGT+TGG | - | chr4_1:45427495-45427514 | None:intergenic | 60.0% | |
| TACGGTCTTGGCCCAAGGGA+AGG | + | chr4_1:45427648-45427667 | Msa0550020:CDS | 60.0% | |
| GCTTCGGACAAGCCTTCCCT+TGG | - | chr4_1:45427663-45427682 | None:intergenic | 60.0% | |
| GCTACTCATGGGCGTCCTTG+TGG | - | chr4_1:45428102-45428121 | None:intergenic | 60.0% | |
| TGAGCCATCGCCGGAGAAGG+TGG | - | chr4_1:45422022-45422041 | None:intergenic | 65.0% | |
| ACAGTGGATGGGGGCCCACT+AGG | - | chr4_1:45426727-45426746 | None:intergenic | 65.0% | |
| ! | TAGTGGGCCCCCATCCACTG+TGG | + | chr4_1:45426726-45426745 | Msa0550020:CDS | 65.0% |
| !! | GCTCCACAGGTGCTGAGGAC+TGG | - | chr4_1:45426914-45426933 | None:intergenic | 65.0% |
| CGCCAGAGGTTGGGTCAACC+TGG | - | chr4_1:45427485-45427504 | None:intergenic | 65.0% | |
| GGTTGACCCAACCTCTGGCG+AGG | + | chr4_1:45427485-45427504 | Msa0550020:intron | 65.0% | |
| GGCTGAGCCATCGCCGGAGA+AGG | - | chr4_1:45422025-45422044 | None:intergenic | 70.0% | |
| GTGGATGGGGGCCCACTAGG+AGG | - | chr4_1:45426724-45426743 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 45421889 | 45429364 | 45421889 | ID=Msa0550020;Name=Msa0550020 |
| chr4_1 | mRNA | 45421889 | 45429364 | 45421889 | ID=Msa0550020-mRNA-1;Parent=Msa0550020;Name=Msa0550020-mRNA-1;_AED=0.05;_eAED=0.05;_QI=145|0.93|1|1|1|1|17|424|868 |
| chr4_1 | exon | 45421889 | 45422079 | 45421889 | ID=Msa0550020-mRNA-1:exon:11935;Parent=Msa0550020-mRNA-1 |
| chr4_1 | exon | 45422698 | 45422795 | 45422698 | ID=Msa0550020-mRNA-1:exon:11936;Parent=Msa0550020-mRNA-1 |
| chr4_1 | exon | 45423226 | 45423339 | 45423226 | ID=Msa0550020-mRNA-1:exon:11937;Parent=Msa0550020-mRNA-1 |
| chr4_1 | exon | 45423470 | 45423670 | 45423470 | ID=Msa0550020-mRNA-1:exon:11938;Parent=Msa0550020-mRNA-1 |
| chr4_1 | exon | 45423759 | 45423860 | 45423759 | ID=Msa0550020-mRNA-1:exon:11939;Parent=Msa0550020-mRNA-1 |
| chr4_1 | exon | 45424697 | 45424804 | 45424697 | ID=Msa0550020-mRNA-1:exon:11940;Parent=Msa0550020-mRNA-1 |
| chr4_1 | exon | 45424884 | 45425117 | 45424884 | ID=Msa0550020-mRNA-1:exon:11941;Parent=Msa0550020-mRNA-1 |
| chr4_1 | exon | 45425339 | 45425589 | 45425339 | ID=Msa0550020-mRNA-1:exon:11942;Parent=Msa0550020-mRNA-1 |
| chr4_1 | exon | 45425705 | 45425876 | 45425705 | ID=Msa0550020-mRNA-1:exon:11943;Parent=Msa0550020-mRNA-1 |
| chr4_1 | exon | 45425963 | 45426118 | 45425963 | ID=Msa0550020-mRNA-1:exon:11944;Parent=Msa0550020-mRNA-1 |
| chr4_1 | exon | 45426223 | 45426273 | 45426223 | ID=Msa0550020-mRNA-1:exon:11945;Parent=Msa0550020-mRNA-1 |
| chr4_1 | exon | 45426404 | 45426535 | 45426404 | ID=Msa0550020-mRNA-1:exon:11946;Parent=Msa0550020-mRNA-1 |
| chr4_1 | exon | 45426610 | 45426810 | 45426610 | ID=Msa0550020-mRNA-1:exon:11947;Parent=Msa0550020-mRNA-1 |
| chr4_1 | exon | 45426915 | 45427046 | 45426915 | ID=Msa0550020-mRNA-1:exon:11948;Parent=Msa0550020-mRNA-1 |
| chr4_1 | exon | 45427129 | 45427302 | 45427129 | ID=Msa0550020-mRNA-1:exon:11949;Parent=Msa0550020-mRNA-1 |
| chr4_1 | exon | 45427486 | 45427725 | 45427486 | ID=Msa0550020-mRNA-1:exon:11950;Parent=Msa0550020-mRNA-1 |
| chr4_1 | exon | 45428746 | 45429364 | 45428746 | ID=Msa0550020-mRNA-1:exon:11951;Parent=Msa0550020-mRNA-1 |
| chr4_1 | five_prime_UTR | 45421889 | 45422033 | 45421889 | ID=Msa0550020-mRNA-1:five_prime_utr;Parent=Msa0550020-mRNA-1 |
| chr4_1 | CDS | 45422034 | 45422079 | 45422034 | ID=Msa0550020-mRNA-1:cds;Parent=Msa0550020-mRNA-1 |
| chr4_1 | CDS | 45422698 | 45422795 | 45422698 | ID=Msa0550020-mRNA-1:cds;Parent=Msa0550020-mRNA-1 |
| chr4_1 | CDS | 45423226 | 45423339 | 45423226 | ID=Msa0550020-mRNA-1:cds;Parent=Msa0550020-mRNA-1 |
| chr4_1 | CDS | 45423470 | 45423670 | 45423470 | ID=Msa0550020-mRNA-1:cds;Parent=Msa0550020-mRNA-1 |
| chr4_1 | CDS | 45423759 | 45423860 | 45423759 | ID=Msa0550020-mRNA-1:cds;Parent=Msa0550020-mRNA-1 |
| chr4_1 | CDS | 45424697 | 45424804 | 45424697 | ID=Msa0550020-mRNA-1:cds;Parent=Msa0550020-mRNA-1 |
| chr4_1 | CDS | 45424884 | 45425117 | 45424884 | ID=Msa0550020-mRNA-1:cds;Parent=Msa0550020-mRNA-1 |
| chr4_1 | CDS | 45425339 | 45425589 | 45425339 | ID=Msa0550020-mRNA-1:cds;Parent=Msa0550020-mRNA-1 |
| chr4_1 | CDS | 45425705 | 45425876 | 45425705 | ID=Msa0550020-mRNA-1:cds;Parent=Msa0550020-mRNA-1 |
| chr4_1 | CDS | 45425963 | 45426118 | 45425963 | ID=Msa0550020-mRNA-1:cds;Parent=Msa0550020-mRNA-1 |
| chr4_1 | CDS | 45426223 | 45426273 | 45426223 | ID=Msa0550020-mRNA-1:cds;Parent=Msa0550020-mRNA-1 |
| chr4_1 | CDS | 45426404 | 45426535 | 45426404 | ID=Msa0550020-mRNA-1:cds;Parent=Msa0550020-mRNA-1 |
| chr4_1 | CDS | 45426610 | 45426810 | 45426610 | ID=Msa0550020-mRNA-1:cds;Parent=Msa0550020-mRNA-1 |
| chr4_1 | CDS | 45426915 | 45427046 | 45426915 | ID=Msa0550020-mRNA-1:cds;Parent=Msa0550020-mRNA-1 |
| chr4_1 | CDS | 45427129 | 45427302 | 45427129 | ID=Msa0550020-mRNA-1:cds;Parent=Msa0550020-mRNA-1 |
| chr4_1 | CDS | 45427486 | 45427725 | 45427486 | ID=Msa0550020-mRNA-1:cds;Parent=Msa0550020-mRNA-1 |
| chr4_1 | CDS | 45428746 | 45428940 | 45428746 | ID=Msa0550020-mRNA-1:cds;Parent=Msa0550020-mRNA-1 |
| chr4_1 | three_prime_UTR | 45428941 | 45429364 | 45428941 | ID=Msa0550020-mRNA-1:three_prime_utr;Parent=Msa0550020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
