AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0309720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0309720 MtrunA17_Chr2g0278311 97.860 514 10 1 1 514 1 513 0.0 1028
Msa0309720 MtrunA17_Chr8g0344451 55.172 493 212 5 24 514 20 505 0.0 558
Msa0309720 MtrunA17_Chr5g0428321 52.381 525 234 6 4 514 19 541 0.0 537
Msa0309720 MtrunA17_Chr8g0334581 42.262 504 238 9 24 514 28 491 1.38e-132 394
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0309720 AT2G01070.1 64.427 506 158 6 10 514 12 496 0.0 664
Msa0309720 AT2G01070.2 64.602 452 147 2 10 460 12 451 0.0 614
Msa0309720 AT1G72480.1 53.737 495 221 4 24 514 19 509 0.0 550
Msa0309720 AT1G61670.1 47.266 512 250 6 12 514 13 513 3.89e-158 460
Msa0309720 AT1G61670.2 47.266 512 250 6 12 514 13 513 3.89e-158 460
Msa0309720 AT1G10980.1 36.495 485 284 9 15 481 16 494 1.17e-101 315

Find 156 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAAGTTCTATGTATTTA+TGG 0.124995 2_4:+4360411 Msa0309720:CDS
GATATAGGCGGTTCTGTTTA+TGG 0.176908 2_4:+4360091 Msa0309720:CDS
TCCTTCAGTATGTGAGGTTT+TGG 0.183086 2_4:+4360467 Msa0309720:CDS
AATACATAGAACTTCTTTAA+TGG 0.194510 2_4:-4360406 None:intergenic
AGTTCTTCCTGATGCTTTCT+TGG 0.210058 2_4:+4360834 Msa0309720:CDS
TACATGATATAAAACCATTT+TGG 0.214692 2_4:-4363103 None:intergenic
CTCTGCCAGCGCTCATTAAA+TGG 0.223361 2_4:-4362393 None:intergenic
CTCTCTGTTTCCATGGGTTA+TGG 0.230696 2_4:+4360670 Msa0309720:CDS
CTTGGATCATCACTGCATTC+TGG 0.238611 2_4:+4362418 Msa0309720:CDS
ATCTCAGCTGTTATTGGTCT+TGG 0.253254 2_4:+4360517 Msa0309720:CDS
CCTTCCAGATACATCATTAA+TGG 0.253854 2_4:-4360797 None:intergenic
ACGAGTCAGAAGAGGATAAA+AGG 0.254497 2_4:+4362921 Msa0309720:CDS
TCACATTCTTTGTTCCAAAA+TGG 0.256294 2_4:+4363089 Msa0309720:three_prime_UTR
AAAACGGAGTTCTGTTAAAT+TGG 0.268399 2_4:+4361073 Msa0309720:CDS
TAGAATCTAAACTGATAATT+CGG 0.281464 2_4:-4360249 None:intergenic
AATTATCAGTTTAGATTCTA+AGG 0.283013 2_4:+4360252 Msa0309720:CDS
ATACATAGAACTTCTTTAAT+GGG 0.287896 2_4:-4360405 None:intergenic
CTTCTGCAACTGACACTAAT+TGG 0.289421 2_4:+4360191 Msa0309720:CDS
TCTGTGTTATATGTTATCTC+TGG 0.300146 2_4:+4362463 Msa0309720:CDS
CACTGTATCTCAGCTGTTAT+TGG 0.316682 2_4:+4360511 Msa0309720:CDS
GTAAGCAAGGAGAGGTTATC+AGG 0.319461 2_4:+4360164 Msa0309720:CDS
CAATGCACCTTTGAGAACTT+TGG 0.323697 2_4:-4362494 None:intergenic
TGATATTGTTAATGCTGAAT+TGG 0.330626 2_4:-4359147 None:intergenic
TGATTCCAGTATTGTTGAAA+TGG 0.337002 2_4:-4360576 None:intergenic
ATGTTTGCCTTGGCATTGTT+TGG 0.340723 2_4:+4360443 Msa0309720:CDS
TCTCATTCTCTCTGTTTCCA+TGG 0.341282 2_4:+4360663 Msa0309720:CDS
CTCTCTTCGGCAGATGAGAT+TGG 0.343736 2_4:-4359056 None:intergenic
AGAATCTAAACTGATAATTC+GGG 0.352560 2_4:-4360248 None:intergenic
ATCACGATATCCTTGAGCTT+GGG 0.360174 2_4:-4360328 None:intergenic
ACCCATGTTGTGACAATAAT+AGG 0.360700 2_4:-4360601 None:intergenic
CACCTCTGATTTAGCTAAGA+TGG 0.372513 2_4:+4360135 Msa0309720:CDS
CAACATGGGTTGTCACTGTT+GGG 0.376037 2_4:+4360614 Msa0309720:CDS
CTCATTCTCTCTGTTTCCAT+GGG 0.383587 2_4:+4360664 Msa0309720:CDS
CGGTTACCTCTTCAGTTGTC+TGG 0.383647 2_4:+4361132 Msa0309720:CDS
AGAAGCCATGTCTCTAACTA+AGG 0.392626 2_4:+4362814 Msa0309720:CDS
TGATGAGCGGGAAGACAATC+TGG 0.393173 2_4:+4360347 Msa0309720:CDS
CGTCTTCCCCGACCCTCAAT+AGG 0.393505 2_4:+4363015 Msa0309720:three_prime_UTR
TATGCCCATTTCAACAATAC+TGG 0.400524 2_4:+4360571 Msa0309720:CDS
GGGACCATTAATGATGTATC+TGG 0.401387 2_4:+4360793 Msa0309720:CDS
GATTGTTTGAGATGATTCTC+TGG 0.401399 2_4:+4360539 Msa0309720:CDS
AATGCACCTTTGAGAACTTT+GGG 0.404433 2_4:-4362493 None:intergenic
TTGGATCATCACTGCATTCT+GGG 0.410672 2_4:+4362419 Msa0309720:CDS
CGTTGCAACTTCACTCTCTT+CGG 0.410843 2_4:-4359069 None:intergenic
CTTTAATGGGGCCATTCTAC+CGG 0.417526 2_4:-4360392 None:intergenic
CTGTTAAATTGGATATATAC+AGG 0.420090 2_4:+4361084 Msa0309720:CDS
GGTTTGAAAATATAACCATT+AGG 0.433202 2_4:+4359993 Msa0309720:intron
AACACCTCCTATTGAGGGTC+GGG 0.433247 2_4:-4363022 None:intergenic
GCGCTGGCTTATGTTTGCCT+TGG 0.439178 2_4:+4360433 Msa0309720:CDS
CTTCTCTCCGGTGGCAGTGA+AGG 0.450618 2_4:+4359311 Msa0309720:CDS
GAAGTTTCTATCACAAAGAC+TGG 0.455857 2_4:+4360274 Msa0309720:CDS
ATGAGCGCTGGCAGAGTGCT+TGG 0.457803 2_4:+4362400 Msa0309720:CDS
CATCAGAAGATGCATCAGTT+TGG 0.459499 2_4:-4362889 None:intergenic
GATTCCAGTATTGTTGAAAT+GGG 0.459867 2_4:-4360575 None:intergenic
GCTGCTGATCGTGATGATAT+AGG 0.468825 2_4:+4360076 Msa0309720:CDS
AAGGAGAAATAAGTTTAGTC+AGG 0.470161 2_4:+4362852 Msa0309720:CDS
CGAGTCAGAAGAGGATAAAA+GGG 0.471974 2_4:+4362922 Msa0309720:CDS
AGTTGTCTGGATAGGTTATG+AGG 0.475557 2_4:+4361145 Msa0309720:CDS
ATATAAATGAAAATAAATAT+AGG 0.476046 2_4:-4359223 None:intergenic
CATTATAGATCTATATTTCA+AGG 0.482028 2_4:+4360219 Msa0309720:CDS
ACCTCTTCAGTTGTCTGGAT+AGG 0.482984 2_4:+4361137 Msa0309720:CDS
GTAAGAACGGCCGTCGTGGA+TGG 0.486797 2_4:-4359372 None:intergenic
GGTGTTGTGCGACCCACTCT+TGG 0.487087 2_4:+4360691 Msa0309720:CDS
CGTCGTGGATGGAATCGGTA+TGG 0.488362 2_4:-4359361 None:intergenic
CTGTGTTATATGTTATCTCT+GGG 0.488675 2_4:+4362464 Msa0309720:CDS
TAAGGTATAAAGAGAGAGAA+GGG 0.489179 2_4:+4358992 None:intergenic
TTTACAACACCTCCTATTGA+GGG 0.489243 2_4:-4363027 None:intergenic
TGGCACGGTACCACGCGCCC+TGG 0.493484 2_4:-4360032 None:intergenic
AATGCGTCCAAGAAAGCATC+AGG 0.493522 2_4:-4360841 None:intergenic
CATCACGATATCCTTGAGCT+TGG 0.496078 2_4:-4360329 None:intergenic
GGTATGGGAAGCGGTGGAGA+TGG 0.496727 2_4:-4359345 None:intergenic
ATCTTCCTTGTCAGGCAAAA+CGG 0.497564 2_4:+4361057 Msa0309720:intron
ACAACATGGGTTGTCACTGT+TGG 0.499602 2_4:+4360613 Msa0309720:CDS
ACCTCTGATTTAGCTAAGAT+GGG 0.503600 2_4:+4360136 Msa0309720:CDS
ATAAATATAGGAGGAGGAGA+AGG 0.506335 2_4:-4359211 None:intergenic
GATGGAATCGGTATGGGAAG+CGG 0.507575 2_4:-4359354 None:intergenic
ACGACGGCCGTTCTTACATT+CGG 0.509858 2_4:+4359378 Msa0309720:CDS
AGTAAGTTACTCCAAGCAAA+AGG 0.517304 2_4:-4360732 None:intergenic
GCTAGATCCGCGCGTGTATG+TGG 0.518173 2_4:+4359017 Msa0309720:five_prime_UTR
CTTTCCCTTAGTTAGAGACA+TGG 0.519744 2_4:-4362819 None:intergenic
GGAGAAGAAAATCTGCAGCC+AGG 0.520643 2_4:+4360014 Msa0309720:CDS
GTAAGGTATAAAGAGAGAGA+AGG 0.522767 2_4:+4358991 None:intergenic
AAATATAGATCTATAATGAC+TGG 0.523698 2_4:-4360214 None:intergenic
GTTCTATGTATTTATGGCGC+TGG 0.529730 2_4:+4360417 Msa0309720:CDS
CACTTAATTCAATAGTCAGT+GGG 0.530389 2_4:-4363206 None:intergenic
ACGGCCGTCGTGGATGGAAT+CGG 0.533314 2_4:-4359366 None:intergenic
GGCGATGCCTTCACTGCCAC+CGG 0.538309 2_4:-4359318 None:intergenic
TTTAATGGGGCCATTCTACC+GGG 0.539654 2_4:-4360391 None:intergenic
CACCTTTGAGAACTTTGGGA+AGG 0.540818 2_4:-4362489 None:intergenic
TTGAGACTTGAAAACCCAGC+AGG 0.541326 2_4:-4362990 None:intergenic
GTGGGATTTCCTAGTATGCA+AGG 0.542253 2_4:-4363188 None:intergenic
ATTATAGATCTATATTTCAA+GGG 0.543479 2_4:+4360220 Msa0309720:CDS
CAGATCCATTTAATGAGCGC+TGG 0.543799 2_4:+4362388 Msa0309720:CDS
GCATTGCCGACATCTTGAAA+AGG 0.544373 2_4:-4359284 None:intergenic
TCACGATATCCTTGAGCTTG+GGG 0.544856 2_4:-4360327 None:intergenic
CTCAAGGATATCGTGATGAG+CGG 0.547215 2_4:+4360334 Msa0309720:CDS
ATGGGAAGCGGTGGAGATGG+AGG 0.547800 2_4:-4359342 None:intergenic
ATGAAAATAAATATAGGAGG+AGG 0.561523 2_4:-4359217 None:intergenic
AAGATGGGAGCTTGTAAGCA+AGG 0.563186 2_4:+4360151 Msa0309720:CDS
GTCGTGGATGGAATCGGTAT+GGG 0.564130 2_4:-4359360 None:intergenic
TTTGGCTCCTTCAGTATGTG+AGG 0.564366 2_4:+4360461 Msa0309720:CDS
GATGTAAGACCGCCAAGAGT+GGG 0.569323 2_4:-4360703 None:intergenic
CTCAAATGCACTAGTAGTAA+CGG 0.569649 2_4:+4361112 Msa0309720:CDS
TCAAGGATATCGTGATGAGC+GGG 0.571538 2_4:+4360335 Msa0309720:CDS
GAAGCCATGTCTCTAACTAA+GGG 0.572177 2_4:+4362815 Msa0309720:CDS
CTAACTAAGGGAAAGCAAGA+AGG 0.572370 2_4:+4362827 Msa0309720:CDS
GGAAGCGGTGGAGATGGAGG+CGG 0.573916 2_4:-4359339 None:intergenic
CGCCTTCCCAAAGTTCTCAA+AGG 0.574890 2_4:+4362487 Msa0309720:CDS
GACCTATTATTGTCACAACA+TGG 0.575906 2_4:+4360599 Msa0309720:CDS
CAACACCTCCTATTGAGGGT+CGG 0.576156 2_4:-4363023 None:intergenic
TGATGTAAGACCGCCAAGAG+TGG 0.580462 2_4:-4360704 None:intergenic
AATTATAATGTGCATTGGCA+CGG 0.581245 2_4:-4360047 None:intergenic
TACATAGAACTTCTTTAATG+GGG 0.583432 2_4:-4360404 None:intergenic
CTTCCCCGACCCTCAATAGG+AGG 0.586533 2_4:+4363018 Msa0309720:three_prime_UTR
GAGAAGAAAATCTGCAGCCA+GGG 0.587661 2_4:+4360015 Msa0309720:CDS
AAATCTGCAGCCAGGGCGCG+TGG 0.589551 2_4:+4360022 Msa0309720:CDS
TAAATGAAAATAAATATAGG+AGG 0.589650 2_4:-4359220 None:intergenic
ACCTATCCAGACAACTGAAG+AGG 0.593355 2_4:-4361138 None:intergenic
GAATGTAAGAACGGCCGTCG+TGG 0.596570 2_4:-4359376 None:intergenic
TCTTGGCGGTCTTACATCAA+AGG 0.598039 2_4:+4360708 Msa0309720:CDS
ACCTATTATTGTCACAACAT+GGG 0.599977 2_4:+4360600 Msa0309720:CDS
AGCTTGTGACCCCAAGCTCA+AGG 0.601127 2_4:+4360318 Msa0309720:CDS
CAATTAGTGTCAGTTGCAGA+AGG 0.601312 2_4:-4360190 None:intergenic
CCATTAATGATGTATCTGGA+AGG 0.601632 2_4:+4360797 Msa0309720:CDS
GTTGTGCGACCCACTCTTGG+CGG 0.604378 2_4:+4360694 Msa0309720:CDS
TCGCACAACACCATAACCCA+TGG 0.605397 2_4:-4360680 None:intergenic
GTACGCATACTCAGAGAAAG+TGG 0.606384 2_4:+4362772 Msa0309720:CDS
GATGTGGATGGATGCAAATG+AGG 0.606399 2_4:-4359249 None:intergenic
GGAATCGGTATGGGAAGCGG+TGG 0.607092 2_4:-4359351 None:intergenic
TGAAGAAGATGCGAACAACA+TGG 0.608610 2_4:-4359186 None:intergenic
AAGGGAAAGCAAGAAGGACA+AGG 0.611902 2_4:+4362833 Msa0309720:CDS
CTGAATATAACTGAATACGT+GGG 0.613072 2_4:+4360772 Msa0309720:CDS
CATTAATGATGTATCTGGAA+GGG 0.613255 2_4:+4360798 Msa0309720:CDS
TGAAGATGACGAGTCAGAAG+AGG 0.617368 2_4:+4362913 Msa0309720:CDS
CCCAAAACCTCACATACTGA+AGG 0.620914 2_4:-4360468 None:intergenic
TTATAGATCTATATTTCAAG+GGG 0.621028 2_4:+4360221 Msa0309720:CDS
AACATGGGTTGTCACTGTTG+GGG 0.621382 2_4:+4360615 Msa0309720:CDS
AAGGTTCGCGATTGTAGATG+TGG 0.624736 2_4:-4359265 None:intergenic
ACACTTAATTCAATAGTCAG+TGG 0.627581 2_4:-4363207 None:intergenic
ACACCTCCTATTGAGGGTCG+GGG 0.627766 2_4:-4363021 None:intergenic
TCCCATCTTAGCTAAATCAG+AGG 0.631969 2_4:-4360137 None:intergenic
TTCGCGATTGTAGATGTGGA+TGG 0.634523 2_4:-4359261 None:intergenic
GGGAGCTTGTAAGCAAGGAG+AGG 0.639731 2_4:+4360156 Msa0309720:CDS
GAAGGAGCCAAACAATGCCA+AGG 0.641996 2_4:-4360450 None:intergenic
TGGGATTTCCTAGTATGCAA+GGG 0.654291 2_4:-4363187 None:intergenic
AGCATTACCGAATGTAAGAA+CGG 0.655590 2_4:-4359385 None:intergenic
AACTACACCACATACACGCG+CGG 0.660131 2_4:-4359024 None:intergenic
TGAGACTTGAAAACCCAGCA+GGG 0.660881 2_4:-4362989 None:intergenic
GCTGAATATAACTGAATACG+TGG 0.662152 2_4:+4360771 Msa0309720:CDS
TACGCATACTCAGAGAAAGT+GGG 0.662515 2_4:+4362773 Msa0309720:CDS
AAGAAGATCACAATTCAACT+CGG 0.664502 2_4:-4359098 None:intergenic
CAGGGAAAACAGTACAGACG+TGG 0.678840 2_4:-4362971 None:intergenic
ATAGGCGGTTCTGTTTATGG+AGG 0.681454 2_4:+4360094 Msa0309720:CDS
ATGATGTATCTGGAAGGGCA+AGG 0.685625 2_4:+4360803 Msa0309720:CDS
TGAATATAACTGAATACGTG+GGG 0.689783 2_4:+4360773 Msa0309720:CDS
GCTGATCGTGATGATATAGG+CGG 0.712191 2_4:+4360079 Msa0309720:CDS
CATACCGATTCCATCCACGA+CGG 0.807287 2_4:+4359362 Msa0309720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTGTTAATTATATGTT+AGG + chr2_4:4359783-4359802 Msa0309720:intron 10.0%
!! ATATTGTTAATTATATGTTA+GGG + chr2_4:4359784-4359803 Msa0309720:intron 10.0%
!! TAAATGAAAATAAATATAGG+AGG - chr2_4:4359223-4359242 None:intergenic 15.0%
!!! CAAATTGATTTTGAAATATT+TGG + chr2_4:4359634-4359653 Msa0309720:intron 15.0%
!! TATTGTTAATTATATGTTAG+GGG + chr2_4:4359785-4359804 Msa0309720:intron 15.0%
!! ATTATAGATCTATATTTCAA+GGG + chr2_4:4360220-4360239 Msa0309720:CDS 15.0%
!!! TAGTATTTATTATTTTTTCC+TGG + chr2_4:4361731-4361750 Msa0309720:intron 15.0%
!!! AGTATTTATTATTTTTTCCT+GGG + chr2_4:4361732-4361751 Msa0309720:intron 15.0%
!! GTAAAATAAAATTGATCAAA+TGG + chr2_4:4362112-4362131 Msa0309720:intron 15.0%
!! TTAGGAATTGTATAATTTGA+TGG + chr2_4:4359550-4359569 Msa0309720:intron 20.0%
!! GAAATGTAAAAAATTGCATA+TGG + chr2_4:4359733-4359752 Msa0309720:intron 20.0%
!! TCAAAAATTATAATGTGCAT+TGG - chr2_4:4360055-4360074 None:intergenic 20.0%
!!! AATGCACATTATAATTTTTG+AGG + chr2_4:4360054-4360073 Msa0309720:CDS 20.0%
!! AAATATAGATCTATAATGAC+TGG - chr2_4:4360217-4360236 None:intergenic 20.0%
!! CATTATAGATCTATATTTCA+AGG + chr2_4:4360219-4360238 Msa0309720:CDS 20.0%
!! TTATAGATCTATATTTCAAG+GGG + chr2_4:4360221-4360240 Msa0309720:CDS 20.0%
!! TAGAATCTAAACTGATAATT+CGG - chr2_4:4360252-4360271 None:intergenic 20.0%
!! AATTATCAGTTTAGATTCTA+AGG + chr2_4:4360252-4360271 Msa0309720:CDS 20.0%
!! ATACATAGAACTTCTTTAAT+GGG - chr2_4:4360408-4360427 None:intergenic 20.0%
!! AATACATAGAACTTCTTTAA+TGG - chr2_4:4360409-4360428 None:intergenic 20.0%
!! AAAGAAGTTCTATGTATTTA+TGG + chr2_4:4360411-4360430 Msa0309720:CDS 20.0%
!!! TTATTTTGTGCAATATAACA+TGG + chr2_4:4361189-4361208 Msa0309720:intron 20.0%
!! AAGACAAAGTAAATTAAAGT+CGG - chr2_4:4361336-4361355 None:intergenic 20.0%
!!! AGAAATATTAACTTGTTGAA+TGG + chr2_4:4361701-4361720 Msa0309720:intron 20.0%
!!! GATTTTCTTATTATTTTCTC+AGG - chr2_4:4361825-4361844 None:intergenic 20.0%
!!! TGTTTTCTTGATATTTGATA+CGG - chr2_4:4361946-4361965 None:intergenic 20.0%
!! ACAAATTATTAATAGAGAAG+AGG + chr2_4:4361963-4361982 Msa0309720:intron 20.0%
!! CAAATTATTAATAGAGAAGA+GGG + chr2_4:4361964-4361983 Msa0309720:intron 20.0%
!!! ATTTAGTTTCCAATTTTTTG+AGG - chr2_4:4362015-4362034 None:intergenic 20.0%
!!! AAAATTTTGTTCATTTGTAC+TGG + chr2_4:4363047-4363066 Msa0309720:three_prime_UTR 20.0%
!!! TACATGATATAAAACCATTT+TGG - chr2_4:4363106-4363125 None:intergenic 20.0%
! TGATATTGTTAATGCTGAAT+TGG - chr2_4:4359150-4359169 None:intergenic 25.0%
! ATGAAAATAAATATAGGAGG+AGG - chr2_4:4359220-4359239 None:intergenic 25.0%
! ACAGAAATGTTGATATGAAT+TGG - chr2_4:4359529-4359548 None:intergenic 25.0%
! CAAGTTAGAATCAATTCTAA+AGG - chr2_4:4359685-4359704 None:intergenic 25.0%
!!! ATGGAGTTACATTTTTTTAG+TGG + chr2_4:4359752-4359771 Msa0309720:intron 25.0%
!! AACATATAAGGTAGGTTTTA+TGG - chr2_4:4359867-4359886 None:intergenic 25.0%
! TCATCGTATATGGATTTATA+TGG + chr2_4:4359892-4359911 Msa0309720:intron 25.0%
! TGACATATCATTCAAATATG+AGG - chr2_4:4359931-4359950 None:intergenic 25.0%
! GGTTTGAAAATATAACCATT+AGG + chr2_4:4359993-4360012 Msa0309720:intron 25.0%
! AGAATCTAAACTGATAATTC+GGG - chr2_4:4360251-4360270 None:intergenic 25.0%
! TACATAGAACTTCTTTAATG+GGG - chr2_4:4360407-4360426 None:intergenic 25.0%
! CAATAAGAAAAACAATAGCA+CGG + chr2_4:4360638-4360657 Msa0309720:CDS 25.0%
! TTGAGCAAATATAATAGGTA+CGG - chr2_4:4360942-4360961 None:intergenic 25.0%
! AACAGAAAAATTTAGAGGTA+GGG - chr2_4:4360985-4361004 None:intergenic 25.0%
! TAACAGAAAAATTTAGAGGT+AGG - chr2_4:4360986-4361005 None:intergenic 25.0%
!! ACCTCTAAATTTTTCTGTTA+TGG + chr2_4:4360986-4361005 Msa0309720:intron 25.0%
! TCCATAACAGAAAAATTTAG+AGG - chr2_4:4360990-4361009 None:intergenic 25.0%
! CAAACATATTTGAAAAAAGG+AGG - chr2_4:4361024-4361043 None:intergenic 25.0%
!!! CTCCTTTTTTCAAATATGTT+TGG + chr2_4:4361022-4361041 Msa0309720:intron 25.0%
! TGCCAAACATATTTGAAAAA+AGG - chr2_4:4361027-4361046 None:intergenic 25.0%
! CTGTTAAATTGGATATATAC+AGG + chr2_4:4361084-4361103 Msa0309720:CDS 25.0%
! ATTTCAGTTACTAATACAAG+AGG - chr2_4:4361216-4361235 None:intergenic 25.0%
!!! GGATTGGACTTTTTTTTTTT+GGG - chr2_4:4361314-4361333 None:intergenic 25.0%
! AGACAAAGTAAATTAAAGTC+GGG - chr2_4:4361335-4361354 None:intergenic 25.0%
! AATAGGAAATATAAAGGAAC+AGG - chr2_4:4361411-4361430 None:intergenic 25.0%
! GTGAGAAATAGGAAATATAA+AGG - chr2_4:4361417-4361436 None:intergenic 25.0%
! ATAGAGTAATGTGATTTATC+TGG + chr2_4:4361448-4361467 Msa0309720:intron 25.0%
! AATGAGTGAAAATAACTTAC+AGG + chr2_4:4361481-4361500 Msa0309720:intron 25.0%
!!! ATAACAAGCCTTATTCTAAT+AGG - chr2_4:4361915-4361934 None:intergenic 25.0%
! GTAAAGTTAGCATATATTGA+TGG - chr2_4:4362344-4362363 None:intergenic 25.0%
!!! TATGCTAACTTTACTTTTAC+AGG + chr2_4:4362350-4362369 Msa0309720:intron 25.0%
! TTGAAATTTACAATGTTGTG+TGG + chr2_4:4362596-4362615 Msa0309720:intron 25.0%
! TGAAATTTACAATGTTGTGT+GGG + chr2_4:4362597-4362616 Msa0309720:intron 25.0%
!!! TGTTTTTTGCCCTTTTTTTA+CGG - chr2_4:4362654-4362673 None:intergenic 25.0%
AAGAAGATCACAATTCAACT+CGG - chr2_4:4359101-4359120 None:intergenic 30.0%
! TCTCTTTTGAGCATTCTTTT+CGG + chr2_4:4359120-4359139 Msa0309720:five_prime_UTR 30.0%
TTACTTATGCACACTTTAGA+TGG + chr2_4:4359433-4359452 Msa0309720:intron 30.0%
CATATCAACATTTCTGTCTT+AGG + chr2_4:4359532-4359551 Msa0309720:intron 30.0%
! AGATAAATAGTGGAGTGATA+AGG - chr2_4:4359832-4359851 None:intergenic 30.0%
!! ATAAGGTAGGTTTTATGGTT+GGG - chr2_4:4359862-4359881 None:intergenic 30.0%
!! TATAAGGTAGGTTTTATGGT+TGG - chr2_4:4359863-4359882 None:intergenic 30.0%
TGAGATGTAACATATAAGGT+AGG - chr2_4:4359875-4359894 None:intergenic 30.0%
ACGATGAGATGTAACATATA+AGG - chr2_4:4359879-4359898 None:intergenic 30.0%
ATGTTACATCTCATCGTATA+TGG + chr2_4:4359882-4359901 Msa0309720:intron 30.0%
! AATTATAATGTGCATTGGCA+CGG - chr2_4:4360050-4360069 None:intergenic 30.0%
GATTCCAGTATTGTTGAAAT+GGG - chr2_4:4360578-4360597 None:intergenic 30.0%
TGATTCCAGTATTGTTGAAA+TGG - chr2_4:4360579-4360598 None:intergenic 30.0%
ACCTATTATTGTCACAACAT+GGG + chr2_4:4360600-4360619 Msa0309720:CDS 30.0%
CTGAATATAACTGAATACGT+GGG + chr2_4:4360772-4360791 Msa0309720:CDS 30.0%
TGAATATAACTGAATACGTG+GGG + chr2_4:4360773-4360792 Msa0309720:CDS 30.0%
CATTAATGATGTATCTGGAA+GGG + chr2_4:4360798-4360817 Msa0309720:CDS 30.0%
!!! TGGACGCATTTTTGATTTTA+TGG + chr2_4:4360854-4360873 Msa0309720:CDS 30.0%
AAAAACACTAGAACAGTTAC+AGG + chr2_4:4360894-4360913 Msa0309720:CDS 30.0%
TGAGCAAATATAATAGGTAC+GGG - chr2_4:4360941-4360960 None:intergenic 30.0%
GGAACTTGAGCAAATATAAT+AGG - chr2_4:4360947-4360966 None:intergenic 30.0%
AAAACGGAGTTCTGTTAAAT+TGG + chr2_4:4361073-4361092 Msa0309720:CDS 30.0%
!!! GGGATTGGACTTTTTTTTTT+TGG - chr2_4:4361315-4361334 None:intergenic 30.0%
AAGTAAATTAAAGTCGGGAT+TGG - chr2_4:4361330-4361349 None:intergenic 30.0%
! TATTTCCTATTTCTCACAAG+TGG + chr2_4:4361420-4361439 Msa0309720:intron 30.0%
! TTTTACCACTTGTGAGAAAT+AGG - chr2_4:4361428-4361447 None:intergenic 30.0%
AGTGAAAATAACTTACAGGA+AGG + chr2_4:4361485-4361504 Msa0309720:intron 30.0%
TGTGAGAAAAAAAAACGAAG+AGG + chr2_4:4361772-4361791 Msa0309720:intron 30.0%
ACCTTCTACCTATTAGAATA+AGG + chr2_4:4361904-4361923 Msa0309720:intron 30.0%
TCAAGGAAACCTCAAAAAAT+TGG + chr2_4:4362003-4362022 Msa0309720:intron 30.0%
! ATGCATTTTTCTCGTTCATT+TGG - chr2_4:4362059-4362078 None:intergenic 30.0%
TGAATCAAGTGATGACTAAA+TGG + chr2_4:4362139-4362158 Msa0309720:intron 30.0%
GAATCAAGTGATGACTAAAT+GGG + chr2_4:4362140-4362159 Msa0309720:intron 30.0%
! AAATGGGATTCTTCATTTTG+TGG + chr2_4:4362156-4362175 Msa0309720:intron 30.0%
TCTGTGTTATATGTTATCTC+TGG + chr2_4:4362463-4362482 Msa0309720:CDS 30.0%
CTGTGTTATATGTTATCTCT+GGG + chr2_4:4362464-4362483 Msa0309720:CDS 30.0%
AGTAGTAAAGCCGTAAAAAA+AGG + chr2_4:4362641-4362660 Msa0309720:intron 30.0%
GTAGTAAAGCCGTAAAAAAA+GGG + chr2_4:4362642-4362661 Msa0309720:intron 30.0%
AAGGAGAAATAAGTTTAGTC+AGG + chr2_4:4362852-4362871 Msa0309720:CDS 30.0%
TCACATTCTTTGTTCCAAAA+TGG + chr2_4:4363089-4363108 Msa0309720:three_prime_UTR 30.0%
CACTTAATTCAATAGTCAGT+GGG - chr2_4:4363209-4363228 None:intergenic 30.0%
ACACTTAATTCAATAGTCAG+TGG - chr2_4:4363210-4363229 None:intergenic 30.0%
ATAAATATAGGAGGAGGAGA+AGG - chr2_4:4359214-4359233 None:intergenic 35.0%
AGCATTACCGAATGTAAGAA+CGG - chr2_4:4359388-4359407 None:intergenic 35.0%
TAGATGCTAGACTGAAATGA+AGG + chr2_4:4359575-4359594 Msa0309720:intron 35.0%
AGATGCTAGACTGAAATGAA+GGG + chr2_4:4359576-4359595 Msa0309720:intron 35.0%
! GAGCCAAAATTGATTCTAGA+GGG + chr2_4:4359605-4359624 Msa0309720:intron 35.0%
! AAATAGTGGAGTGATAAGGA+GGG - chr2_4:4359828-4359847 None:intergenic 35.0%
! TAAATAGTGGAGTGATAAGG+AGG - chr2_4:4359829-4359848 None:intergenic 35.0%
! TGCAGATTTTCTTCTCCTAA+TGG - chr2_4:4360011-4360030 None:intergenic 35.0%
ACCTCTGATTTAGCTAAGAT+GGG + chr2_4:4360136-4360155 Msa0309720:CDS 35.0%
GAAGTTTCTATCACAAAGAC+TGG + chr2_4:4360274-4360293 Msa0309720:CDS 35.0%
! GATTGTTTGAGATGATTCTC+TGG + chr2_4:4360539-4360558 Msa0309720:CDS 35.0%
TATGCCCATTTCAACAATAC+TGG + chr2_4:4360571-4360590 Msa0309720:CDS 35.0%
GACCTATTATTGTCACAACA+TGG + chr2_4:4360599-4360618 Msa0309720:CDS 35.0%
ACCCATGTTGTGACAATAAT+AGG - chr2_4:4360604-4360623 None:intergenic 35.0%
AGTAAGTTACTCCAAGCAAA+AGG - chr2_4:4360735-4360754 None:intergenic 35.0%
GCTGAATATAACTGAATACG+TGG + chr2_4:4360771-4360790 Msa0309720:CDS 35.0%
CCTTCCAGATACATCATTAA+TGG - chr2_4:4360800-4360819 None:intergenic 35.0%
CCATTAATGATGTATCTGGA+AGG + chr2_4:4360797-4360816 Msa0309720:CDS 35.0%
CTCAAATGCACTAGTAGTAA+CGG + chr2_4:4361112-4361131 Msa0309720:CDS 35.0%
GTAATATAACACAGCGAAAC+AGG - chr2_4:4361270-4361289 None:intergenic 35.0%
TCCATATCACCTTTGCATTT+AGG + chr2_4:4361378-4361397 Msa0309720:intron 35.0%
ACCTAAATGCAAAGGTGATA+TGG - chr2_4:4361382-4361401 None:intergenic 35.0%
! GAATGTGTTGCATGGTATTT+TGG - chr2_4:4361513-4361532 None:intergenic 35.0%
ATACAACTGAATGTGTTGCA+TGG - chr2_4:4361521-4361540 None:intergenic 35.0%
ATGCAACACATTCAGTTGTA+TGG + chr2_4:4361520-4361539 Msa0309720:intron 35.0%
TGCAACACATTCAGTTGTAT+GGG + chr2_4:4361521-4361540 Msa0309720:intron 35.0%
! ACAACGTAGATAAGCTCTAA+AGG - chr2_4:4361632-4361651 None:intergenic 35.0%
AGTGTAGAAATGCTAGCATT+TGG + chr2_4:4361662-4361681 Msa0309720:intron 35.0%
TTTCCTGGGTAAATATCAAG+TGG + chr2_4:4361746-4361765 Msa0309720:intron 35.0%
TATCCACTTGATATTTACCC+AGG - chr2_4:4361752-4361771 None:intergenic 35.0%
AAGAGGCTTCTGATTAGAAA+AGG + chr2_4:4361789-4361808 Msa0309720:intron 35.0%
AGAGGCTTCTGATTAGAAAA+GGG + chr2_4:4361790-4361809 Msa0309720:intron 35.0%
! GCCTTATTCTAATAGGTAGA+AGG - chr2_4:4361908-4361927 None:intergenic 35.0%
CGAGAAAAATGCATGATCAA+AGG + chr2_4:4362065-4362084 Msa0309720:intron 35.0%
GTCAAACACAAACAAAAGCA+GGG - chr2_4:4362217-4362236 None:intergenic 35.0%
AGTCAAACACAAACAAAAGC+AGG - chr2_4:4362218-4362237 None:intergenic 35.0%
! AATGCACCTTTGAGAACTTT+GGG - chr2_4:4362496-4362515 None:intergenic 35.0%
ATTCTAACGTCTGATTCAGA+TGG + chr2_4:4362696-4362715 Msa0309720:intron 35.0%
CAAAAGAAGTGAGACTCTAT+CGG - chr2_4:4362725-4362744 None:intergenic 35.0%
TTAGTCAGGCAAGAGAAAAA+TGG + chr2_4:4362866-4362885 Msa0309720:CDS 35.0%
TTTACAACACCTCCTATTGA+GGG - chr2_4:4363030-4363049 None:intergenic 35.0%
! TTTTACAACACCTCCTATTG+AGG - chr2_4:4363031-4363050 None:intergenic 35.0%
TGAAGAAGATGCGAACAACA+TGG - chr2_4:4359189-4359208 None:intergenic 40.0%
GATGCTAGACTGAAATGAAG+GGG + chr2_4:4359577-4359596 Msa0309720:intron 40.0%
! GGAGCCAAAATTGATTCTAG+AGG + chr2_4:4359604-4359623 Msa0309720:intron 40.0%
!!! CCTCCCTCTAGAATCAATTT+TGG - chr2_4:4359611-4359630 None:intergenic 40.0%
! CCAAAATTGATTCTAGAGGG+AGG + chr2_4:4359608-4359627 Msa0309720:intron 40.0%
GCACTCGAGTAGAATTGATT+TGG + chr2_4:4359659-4359678 Msa0309720:intron 40.0%
!!! ACACTGACTTTTTCTGCTTG+TGG + chr2_4:4359964-4359983 Msa0309720:intron 40.0%
!!! CACTGACTTTTTCTGCTTGT+GGG + chr2_4:4359965-4359984 Msa0309720:intron 40.0%
! TTTTTCTGCTTGTGGGTGAT+AGG + chr2_4:4359972-4359991 Msa0309720:intron 40.0%
GATATAGGCGGTTCTGTTTA+TGG + chr2_4:4360091-4360110 Msa0309720:CDS 40.0%
CACCTCTGATTTAGCTAAGA+TGG + chr2_4:4360135-4360154 Msa0309720:CDS 40.0%
TCCCATCTTAGCTAAATCAG+AGG - chr2_4:4360140-4360159 None:intergenic 40.0%
CAATTAGTGTCAGTTGCAGA+AGG - chr2_4:4360193-4360212 None:intergenic 40.0%
CTTCTGCAACTGACACTAAT+TGG + chr2_4:4360191-4360210 Msa0309720:CDS 40.0%
ATCACGATATCCTTGAGCTT+GGG - chr2_4:4360331-4360350 None:intergenic 40.0%
ACAATCTGGAAAAACCCTGA+TGG + chr2_4:4360361-4360380 Msa0309720:CDS 40.0%
CAATCTGGAAAAACCCTGAT+GGG + chr2_4:4360362-4360381 Msa0309720:CDS 40.0%
GTTCTATGTATTTATGGCGC+TGG + chr2_4:4360417-4360436 Msa0309720:CDS 40.0%
ATGTTTGCCTTGGCATTGTT+TGG + chr2_4:4360443-4360462 Msa0309720:CDS 40.0%
! TCCTTCAGTATGTGAGGTTT+TGG + chr2_4:4360467-4360486 Msa0309720:CDS 40.0%
! CCTTCAGTATGTGAGGTTTT+GGG + chr2_4:4360468-4360487 Msa0309720:CDS 40.0%
CACTGTATCTCAGCTGTTAT+TGG + chr2_4:4360511-4360530 Msa0309720:CDS 40.0%
! ATCTCAGCTGTTATTGGTCT+TGG + chr2_4:4360517-4360536 Msa0309720:CDS 40.0%
TCTCATTCTCTCTGTTTCCA+TGG + chr2_4:4360663-4360682 Msa0309720:CDS 40.0%
CTCATTCTCTCTGTTTCCAT+GGG + chr2_4:4360664-4360683 Msa0309720:CDS 40.0%
! ACATCAAAGGTCCTTTTGCT+TGG + chr2_4:4360721-4360740 Msa0309720:CDS 40.0%
GGGACCATTAATGATGTATC+TGG + chr2_4:4360793-4360812 Msa0309720:CDS 40.0%
AGTTCTTCCTGATGCTTTCT+TGG + chr2_4:4360834-4360853 Msa0309720:CDS 40.0%
!! GTAGGGTGCTGTAAAATAGT+AGG - chr2_4:4360968-4360987 None:intergenic 40.0%
ATCTTCCTTGTCAGGCAAAA+CGG + chr2_4:4361057-4361076 Msa0309720:intron 40.0%
AGTTGTCTGGATAGGTTATG+AGG + chr2_4:4361145-4361164 Msa0309720:CDS 40.0%
TCACCTTTGCATTTAGGTAC+CGG + chr2_4:4361384-4361403 Msa0309720:intron 40.0%
GAAATATAAAGGAACAGGCC+CGG - chr2_4:4361406-4361425 None:intergenic 40.0%
!! GTAGATAAGCTCTAAAGGAG+TGG - chr2_4:4361627-4361646 None:intergenic 40.0%
CTTCTGATTAGAAAAGGGAG+AGG + chr2_4:4361795-4361814 Msa0309720:intron 40.0%
GAGCTCAAAGAACATTGTCA+AGG + chr2_4:4361986-4362005 Msa0309720:intron 40.0%
TTCTCGTTCATTTGGCTGAT+AGG - chr2_4:4362051-4362070 None:intergenic 40.0%
CGTTTGAAAGAAACATCCAG+AGG + chr2_4:4362182-4362201 Msa0309720:intron 40.0%
TTGGATCATCACTGCATTCT+GGG + chr2_4:4362419-4362438 Msa0309720:CDS 40.0%
! CAATGCACCTTTGAGAACTT+TGG - chr2_4:4362497-4362516 None:intergenic 40.0%
TTTACAATGTTGTGTGGGTG+AGG + chr2_4:4362602-4362621 Msa0309720:intron 40.0%
TACGCATACTCAGAGAAAGT+GGG + chr2_4:4362773-4362792 Msa0309720:CDS 40.0%
AGAAGCCATGTCTCTAACTA+AGG + chr2_4:4362814-4362833 Msa0309720:CDS 40.0%
GAAGCCATGTCTCTAACTAA+GGG + chr2_4:4362815-4362834 Msa0309720:CDS 40.0%
CTTTCCCTTAGTTAGAGACA+TGG - chr2_4:4362822-4362841 None:intergenic 40.0%
CTAACTAAGGGAAAGCAAGA+AGG + chr2_4:4362827-4362846 Msa0309720:CDS 40.0%
CATCAGAAGATGCATCAGTT+TGG - chr2_4:4362892-4362911 None:intergenic 40.0%
ACGAGTCAGAAGAGGATAAA+AGG + chr2_4:4362921-4362940 Msa0309720:CDS 40.0%
CGAGTCAGAAGAGGATAAAA+GGG + chr2_4:4362922-4362941 Msa0309720:CDS 40.0%
! TCTTTTAGCCCTTGCATACT+AGG + chr2_4:4363179-4363198 Msa0309720:three_prime_UTR 40.0%
TGGGATTTCCTAGTATGCAA+GGG - chr2_4:4363190-4363209 None:intergenic 40.0%
CGTTGCAACTTCACTCTCTT+CGG - chr2_4:4359072-4359091 None:intergenic 45.0%
GATGTGGATGGATGCAAATG+AGG - chr2_4:4359252-4359271 None:intergenic 45.0%
TTCGCGATTGTAGATGTGGA+TGG - chr2_4:4359264-4359283 None:intergenic 45.0%
AAGGTTCGCGATTGTAGATG+TGG - chr2_4:4359268-4359287 None:intergenic 45.0%
!! CGCGAACCTTTTCAAGATGT+CGG + chr2_4:4359278-4359297 Msa0309720:CDS 45.0%
GCATTGCCGACATCTTGAAA+AGG - chr2_4:4359287-4359306 None:intergenic 45.0%
! GGCAATGCTTTTCTTCTCTC+CGG + chr2_4:4359299-4359318 Msa0309720:CDS 45.0%
! AATGCTTTTCTTCTCTCCGG+TGG + chr2_4:4359302-4359321 Msa0309720:CDS 45.0%
GGGATGGAGGAGATAAATAG+TGG - chr2_4:4359842-4359861 None:intergenic 45.0%
!! AGGTTTTATGGTTGGGATGG+AGG - chr2_4:4359855-4359874 None:intergenic 45.0%
!! GGTAGGTTTTATGGTTGGGA+TGG - chr2_4:4359858-4359877 None:intergenic 45.0%
GAGAAGAAAATCTGCAGCCA+GGG + chr2_4:4360015-4360034 Msa0309720:CDS 45.0%
GCTGCTGATCGTGATGATAT+AGG + chr2_4:4360076-4360095 Msa0309720:CDS 45.0%
GCTGATCGTGATGATATAGG+CGG + chr2_4:4360079-4360098 Msa0309720:CDS 45.0%
ATAGGCGGTTCTGTTTATGG+AGG + chr2_4:4360094-4360113 Msa0309720:CDS 45.0%
AAGATGGGAGCTTGTAAGCA+AGG + chr2_4:4360151-4360170 Msa0309720:CDS 45.0%
GTAAGCAAGGAGAGGTTATC+AGG + chr2_4:4360164-4360183 Msa0309720:CDS 45.0%
TCACGATATCCTTGAGCTTG+GGG - chr2_4:4360330-4360349 None:intergenic 45.0%
CATCACGATATCCTTGAGCT+TGG - chr2_4:4360332-4360351 None:intergenic 45.0%
CTCAAGGATATCGTGATGAG+CGG + chr2_4:4360334-4360353 Msa0309720:CDS 45.0%
TCAAGGATATCGTGATGAGC+GGG + chr2_4:4360335-4360354 Msa0309720:CDS 45.0%
!!! AACCCTGATGGGTTTTTACC+CGG + chr2_4:4360373-4360392 Msa0309720:CDS 45.0%
TACCGGGTAAAAACCCATCA+GGG - chr2_4:4360378-4360397 None:intergenic 45.0%
! TGGGTTTTTACCCGGTAGAA+TGG + chr2_4:4360381-4360400 Msa0309720:CDS 45.0%
TTTAATGGGGCCATTCTACC+GGG - chr2_4:4360394-4360413 None:intergenic 45.0%
CTTTAATGGGGCCATTCTAC+CGG - chr2_4:4360395-4360414 None:intergenic 45.0%
! TTTGGCTCCTTCAGTATGTG+AGG + chr2_4:4360461-4360480 Msa0309720:CDS 45.0%
CCCAAAACCTCACATACTGA+AGG - chr2_4:4360471-4360490 None:intergenic 45.0%
! ACAACATGGGTTGTCACTGT+TGG + chr2_4:4360613-4360632 Msa0309720:CDS 45.0%
! CAACATGGGTTGTCACTGTT+GGG + chr2_4:4360614-4360633 Msa0309720:CDS 45.0%
! AACATGGGTTGTCACTGTTG+GGG + chr2_4:4360615-4360634 Msa0309720:CDS 45.0%
! CTCTCTGTTTCCATGGGTTA+TGG + chr2_4:4360670-4360689 Msa0309720:CDS 45.0%
TCTTGGCGGTCTTACATCAA+AGG + chr2_4:4360708-4360727 Msa0309720:CDS 45.0%
ATGATGTATCTGGAAGGGCA+AGG + chr2_4:4360803-4360822 Msa0309720:CDS 45.0%
!! AATGCGTCCAAGAAAGCATC+AGG - chr2_4:4360844-4360863 None:intergenic 45.0%
CTGTCTGTATCTTCCTTGTC+AGG + chr2_4:4361049-4361068 Msa0309720:intron 45.0%
ACCTCTTCAGTTGTCTGGAT+AGG + chr2_4:4361137-4361156 Msa0309720:CDS 45.0%
ACCTATCCAGACAACTGAAG+AGG - chr2_4:4361141-4361160 None:intergenic 45.0%
CACCTTTGCATTTAGGTACC+GGG + chr2_4:4361385-4361404 Msa0309720:intron 45.0%
AAGCTTAAGAGCCCTTAGCT+GGG - chr2_4:4361556-4361575 None:intergenic 45.0%
TTTCCAAACATGAGGGAGCT+AGG - chr2_4:4361600-4361619 None:intergenic 45.0%
TGGCCAGTTTCCAAACATGA+GGG - chr2_4:4361607-4361626 None:intergenic 45.0%
TAGGTAGAAGGTCAGCTACA+TGG - chr2_4:4361896-4361915 None:intergenic 45.0%
! CATTTGGCTGATAGGTTGAG+TGG - chr2_4:4362043-4362062 None:intergenic 45.0%
AGCAGGGATATAAACACCTC+TGG - chr2_4:4362201-4362220 None:intergenic 45.0%
CAGATCCATTTAATGAGCGC+TGG + chr2_4:4362388-4362407 Msa0309720:CDS 45.0%
CTTGGATCATCACTGCATTC+TGG + chr2_4:4362418-4362437 Msa0309720:CDS 45.0%
! CACCTTTGAGAACTTTGGGA+AGG - chr2_4:4362492-4362511 None:intergenic 45.0%
GTACGCATACTCAGAGAAAG+TGG + chr2_4:4362772-4362791 Msa0309720:CDS 45.0%
AAGGGAAAGCAAGAAGGACA+AGG + chr2_4:4362833-4362852 Msa0309720:CDS 45.0%
TGAAGATGACGAGTCAGAAG+AGG + chr2_4:4362913-4362932 Msa0309720:CDS 45.0%
! TCTGTACTGTTTTCCCTGCT+GGG + chr2_4:4362976-4362995 Msa0309720:three_prime_UTR 45.0%
TGAGACTTGAAAACCCAGCA+GGG - chr2_4:4362992-4363011 None:intergenic 45.0%
TTGAGACTTGAAAACCCAGC+AGG - chr2_4:4362993-4363012 None:intergenic 45.0%
GTGGGATTTCCTAGTATGCA+AGG - chr2_4:4363191-4363210 None:intergenic 45.0%
!! ATATAAATGAAAATAAATAT+AGG - chr2_4:4359226-4359245 None:intergenic 5.0%
!! AAAAAATAATAAATACTAAT+AGG - chr2_4:4361729-4361748 None:intergenic 5.0%
AACTACACCACATACACGCG+CGG - chr2_4:4359027-4359046 None:intergenic 50.0%
CTCTCTTCGGCAGATGAGAT+TGG - chr2_4:4359059-4359078 None:intergenic 50.0%
GATGGAATCGGTATGGGAAG+CGG - chr2_4:4359357-4359376 None:intergenic 50.0%
GTCGTGGATGGAATCGGTAT+GGG - chr2_4:4359363-4359382 None:intergenic 50.0%
!! CATACCGATTCCATCCACGA+CGG + chr2_4:4359362-4359381 Msa0309720:CDS 50.0%
ACGACGGCCGTTCTTACATT+CGG + chr2_4:4359378-4359397 Msa0309720:CDS 50.0%
GCTAGACTGAAATGAAGGGG+AGG + chr2_4:4359580-4359599 Msa0309720:intron 50.0%
AGACTGAAATGAAGGGGAGG+AGG + chr2_4:4359583-4359602 Msa0309720:intron 50.0%
TGGAGTGATAAGGAGGGAGA+CGG - chr2_4:4359822-4359841 None:intergenic 50.0%
GGAGAAGAAAATCTGCAGCC+AGG + chr2_4:4360014-4360033 Msa0309720:CDS 50.0%
TGATGAGCGGGAAGACAATC+TGG + chr2_4:4360347-4360366 Msa0309720:CDS 50.0%
CTACCGGGTAAAAACCCATC+AGG - chr2_4:4360379-4360398 None:intergenic 50.0%
GAAGGAGCCAAACAATGCCA+AGG - chr2_4:4360453-4360472 None:intergenic 50.0%
TCGCACAACACCATAACCCA+TGG - chr2_4:4360683-4360702 None:intergenic 50.0%
GATGTAAGACCGCCAAGAGT+GGG - chr2_4:4360706-4360725 None:intergenic 50.0%
TGATGTAAGACCGCCAAGAG+TGG - chr2_4:4360707-4360726 None:intergenic 50.0%
! GAACTCCGTTTTGCCTGACA+AGG - chr2_4:4361065-4361084 None:intergenic 50.0%
CGGTTACCTCTTCAGTTGTC+TGG + chr2_4:4361132-4361151 Msa0309720:CDS 50.0%
GGTGTATGTGTCCCAGCTAA+GGG + chr2_4:4361542-4361561 Msa0309720:intron 50.0%
GAAGCTTAAGAGCCCTTAGC+TGG - chr2_4:4361557-4361576 None:intergenic 50.0%
GCTCCCTCATGTTTGGAAAC+TGG + chr2_4:4361601-4361620 Msa0309720:intron 50.0%
GTGGCCAGTTTCCAAACATG+AGG - chr2_4:4361608-4361627 None:intergenic 50.0%
CTCTGCCAGCGCTCATTAAA+TGG - chr2_4:4362396-4362415 None:intergenic 50.0%
CGCCTTCCCAAAGTTCTCAA+AGG + chr2_4:4362487-4362506 Msa0309720:CDS 50.0%
TTTGCCTCTGCGAACTACGT+AGG + chr2_4:4362750-4362769 Msa0309720:intron 50.0%
CAGGGAAAACAGTACAGACG+TGG - chr2_4:4362974-4362993 None:intergenic 50.0%
! GTCTGTACTGTTTTCCCTGC+TGG + chr2_4:4362975-4362994 Msa0309720:three_prime_UTR 50.0%
AACACCTCCTATTGAGGGTC+GGG - chr2_4:4363025-4363044 None:intergenic 50.0%
CAACACCTCCTATTGAGGGT+CGG - chr2_4:4363026-4363045 None:intergenic 50.0%
CGTCGTGGATGGAATCGGTA+TGG - chr2_4:4359364-4359383 None:intergenic 55.0%
GAATGTAAGAACGGCCGTCG+TGG - chr2_4:4359379-4359398 None:intergenic 55.0%
GGGAGCTTGTAAGCAAGGAG+AGG + chr2_4:4360156-4360175 Msa0309720:CDS 55.0%
AGCTTGTGACCCCAAGCTCA+AGG + chr2_4:4360318-4360337 Msa0309720:CDS 55.0%
!! GCGCTGGCTTATGTTTGCCT+TGG + chr2_4:4360433-4360452 Msa0309720:CDS 55.0%
GGCCCGGTACCTAAATGCAA+AGG - chr2_4:4361390-4361409 None:intergenic 55.0%
GGGTGTATGTGTCCCAGCTA+AGG + chr2_4:4361541-4361560 Msa0309720:intron 55.0%
CGTCCTAGCTCCCTCATGTT+TGG + chr2_4:4361594-4361613 Msa0309720:intron 55.0%
CGTACCTACGTAGTTCGCAG+AGG - chr2_4:4362757-4362776 None:intergenic 55.0%
ACACCTCCTATTGAGGGTCG+GGG - chr2_4:4363024-4363043 None:intergenic 55.0%
GCTAGATCCGCGCGTGTATG+TGG + chr2_4:4359017-4359036 Msa0309720:five_prime_UTR 60.0%
CTTCTCTCCGGTGGCAGTGA+AGG + chr2_4:4359311-4359330 Msa0309720:CDS 60.0%
ATGGGAAGCGGTGGAGATGG+AGG - chr2_4:4359345-4359364 None:intergenic 60.0%
GGTATGGGAAGCGGTGGAGA+TGG - chr2_4:4359348-4359367 None:intergenic 60.0%
GGAATCGGTATGGGAAGCGG+TGG - chr2_4:4359354-4359373 None:intergenic 60.0%
ACGGCCGTCGTGGATGGAAT+CGG - chr2_4:4359369-4359388 None:intergenic 60.0%
GTAAGAACGGCCGTCGTGGA+TGG - chr2_4:4359375-4359394 None:intergenic 60.0%
! GGTGTTGTGCGACCCACTCT+TGG + chr2_4:4360691-4360710 Msa0309720:CDS 60.0%
GTTGTGCGACCCACTCTTGG+CGG + chr2_4:4360694-4360713 Msa0309720:CDS 60.0%
!! ATGAGCGCTGGCAGAGTGCT+TGG + chr2_4:4362400-4362419 Msa0309720:CDS 60.0%
CGTCTTCCCCGACCCTCAAT+AGG + chr2_4:4363015-4363034 Msa0309720:three_prime_UTR 60.0%
CTTCCCCGACCCTCAATAGG+AGG + chr2_4:4363018-4363037 Msa0309720:three_prime_UTR 60.0%
GGCGATGCCTTCACTGCCAC+CGG - chr2_4:4359321-4359340 None:intergenic 65.0%
GGAAGCGGTGGAGATGGAGG+CGG - chr2_4:4359342-4359361 None:intergenic 65.0%
AAATCTGCAGCCAGGGCGCG+TGG + chr2_4:4360022-4360041 Msa0309720:CDS 65.0%
TGGCACGGTACCACGCGCCC+TGG - chr2_4:4360035-4360054 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 4358996 4363259 4358996 ID=Msa0309720;Name=Msa0309720
chr2_4 mRNA 4358996 4363259 4358996 ID=Msa0309720-mRNA-1;Parent=Msa0309720;Name=Msa0309720-mRNA-1;_AED=0.01;_eAED=0.01;_QI=192|1|1|1|1|1|5|310|514
chr2_4 exon 4358996 4359399 4358996 ID=Msa0309720-mRNA-1:exon:1463;Parent=Msa0309720-mRNA-1
chr2_4 exon 4359994 4360915 4359994 ID=Msa0309720-mRNA-1:exon:1464;Parent=Msa0309720-mRNA-1
chr2_4 exon 4361071 4361166 4361071 ID=Msa0309720-mRNA-1:exon:1465;Parent=Msa0309720-mRNA-1
chr2_4 exon 4362372 4362508 4362372 ID=Msa0309720-mRNA-1:exon:1466;Parent=Msa0309720-mRNA-1
chr2_4 exon 4362772 4363259 4362772 ID=Msa0309720-mRNA-1:exon:1467;Parent=Msa0309720-mRNA-1
chr2_4 five_prime_UTR 4358996 4359187 4358996 ID=Msa0309720-mRNA-1:five_prime_utr;Parent=Msa0309720-mRNA-1
chr2_4 CDS 4359188 4359399 4359188 ID=Msa0309720-mRNA-1:cds;Parent=Msa0309720-mRNA-1
chr2_4 CDS 4359994 4360915 4359994 ID=Msa0309720-mRNA-1:cds;Parent=Msa0309720-mRNA-1
chr2_4 CDS 4361071 4361166 4361071 ID=Msa0309720-mRNA-1:cds;Parent=Msa0309720-mRNA-1
chr2_4 CDS 4362372 4362508 4362372 ID=Msa0309720-mRNA-1:cds;Parent=Msa0309720-mRNA-1
chr2_4 CDS 4362772 4362949 4362772 ID=Msa0309720-mRNA-1:cds;Parent=Msa0309720-mRNA-1
chr2_4 three_prime_UTR 4362950 4363259 4362950 ID=Msa0309720-mRNA-1:three_prime_utr;Parent=Msa0309720-mRNA-1
Gene Sequence

>Msa0309720

ATGTTGTTCGCATCTTCTTCACTCCTTCTCCTCCTCCTATATTTATTTTCATTTATATTTACCTCATTTGCATCCATCCACATCTACAATCGCGAACCTTTTCAAGATGTCGGCAATGCTTTTCTTCTCTCCGGTGGCAGTGAAGGCATCGCCGCCTCCATCTCCACCGCTTCCCATACCGATTCCATCCACGACGGCCGTTCTTACATTCGGTTTGAAAATATAACCATTAGGAGAAGAAAATCTGCAGCCAGGGCGCGTGGTACCGTGCCAATGCACATTATAATTTTTGAGGCTGCTGATCGTGATGATATAGGCGGTTCTGTTTATGGAGGACAACGAGCAATATGTTGCACCTCTGATTTAGCTAAGATGGGAGCTTGTAAGCAAGGAGAGGTTATCAGGAGACCTTCTGCAACTGACACTAATTGGCCAGTCATTATAGATCTATATTTCAAGGGGAAATCCCGAATTATCAGTTTAGATTCTAAGGAAGTTTCTATCACAAAGACTGGAATGTATAATTTGTTTTTTGTAGCTTGTGACCCCAAGCTCAAGGATATCGTGATGAGCGGGAAGACAATCTGGAAAAACCCTGATGGGTTTTTACCCGGTAGAATGGCCCCATTAAAGAAGTTCTATGTATTTATGGCGCTGGCTTATGTTTGCCTTGGCATTGTTTGGCTCCTTCAGTATGTGAGGTTTTGGGATGATGTATTGCTACTTCAGCACTGTATCTCAGCTGTTATTGGTCTTGGATTGTTTGAGATGATTCTCTGGTATTTTGAGTATGCCCATTTCAACAATACTGGAATCAGACCTATTATTGTCACAACATGGGTTGTCACTGTTGGGGCAATAAGAAAAACAATAGCACGGCTTCTCATTCTCTCTGTTTCCATGGGTTATGGTGTTGTGCGACCCACTCTTGGCGGTCTTACATCAAAGGTCCTTTTGCTTGGAGTAACTTACTTTCTTGCATCAGAGTTGCTGAATATAACTGAATACGTGGGGACCATTAATGATGTATCTGGAAGGGCAAGGCTCTTTCTAGTTCTTCCTGATGCTTTCTTGGACGCATTTTTGATTTTATGGATTTTTACTTCTCTGTCAAAAACACTAGAACAGTTACAGGCAAAACGGAGTTCTGTTAAATTGGATATATACAGGAAATTCTCAAATGCACTAGTAGTAACGGTTACCTCTTCAGTTGTCTGGATAGGTTATGAGGTTTACTTCAAAGCAACAGATCCATTTAATGAGCGCTGGCAGAGTGCTTGGATCATCACTGCATTCTGGGACATTCTAGCATTTGCACTACTCTGTGTTATATGTTATCTCTGGGCGCCTTCCCAAAGTTCTCAAAGGTACGCATACTCAGAGAAAGTGGGAGAAGAATCTGATGACGAAGAAGCCATGTCTCTAACTAAGGGAAAGCAAGAAGGACAAGGAGAAATAAGTTTAGTCAGGCAAGAGAAAAATGGCCAAACTGATGCATCTTCTGATGATGAAGATGACGAGTCAGAAGAGGATAAAAGGGAATAA

Protein sequence

>Msa0309720

MLFASSSLLLLLLYLFSFIFTSFASIHIYNREPFQDVGNAFLLSGGSEGIAASISTASHTDSIHDGRSYIRFENITIRRRKSAARARGTVPMHIIIFEAADRDDIGGSVYGGQRAICCTSDLAKMGACKQGEVIRRPSATDTNWPVIIDLYFKGKSRIISLDSKEVSITKTGMYNLFFVACDPKLKDIVMSGKTIWKNPDGFLPGRMAPLKKFYVFMALAYVCLGIVWLLQYVRFWDDVLLLQHCISAVIGLGLFEMILWYFEYAHFNNTGIRPIIVTTWVVTVGAIRKTIARLLILSVSMGYGVVRPTLGGLTSKVLLLGVTYFLASELLNITEYVGTINDVSGRARLFLVLPDAFLDAFLILWIFTSLSKTLEQLQAKRSSVKLDIYRKFSNALVVTVTSSVVWIGYEVYFKATDPFNERWQSAWIITAFWDILAFALLCVICYLWAPSQSSQRYAYSEKVGEESDDEEAMSLTKGKQEGQGEISLVRQEKNGQTDASSDDEDDESEEDKRE*