Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309720 | XP_003593093.1 | 97.860 | 514 | 10 | 1 | 1 | 514 | 1 | 513 | 0.0 | 1028 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309720 | sp|Q28EW0|TM87A_XENTR | 32.484 | 314 | 200 | 6 | 197 | 505 | 197 | 503 | 5.93e-51 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002420 | Msa0309720 | 0.830463 | 2.895272e-55 | -8.615850e-47 |
| Msa0040790 | Msa0309720 | 0.810053 | 1.395457e-50 | -8.615850e-47 |
| Msa0098070 | Msa0309720 | 0.801196 | 1.009210e-48 | -8.615850e-47 |
| Msa0169410 | Msa0309720 | 0.811092 | 8.320296e-51 | -8.615850e-47 |
| Msa0184500 | Msa0309720 | 0.835050 | 2.102286e-56 | -8.615850e-47 |
| Msa0186410 | Msa0309720 | 0.803206 | 3.893653e-49 | -8.615850e-47 |
| Msa0189270 | Msa0309720 | 0.893601 | 5.399522e-75 | -8.615850e-47 |
| Msa0238660 | Msa0309720 | 0.800552 | 1.365867e-48 | -8.615850e-47 |
| Msa0276380 | Msa0309720 | 0.832083 | 1.157030e-55 | -8.615850e-47 |
| Msa0276860 | Msa0309720 | 0.825997 | 3.453827e-54 | -8.615850e-47 |
| Msa0288620 | Msa0309720 | 0.806821 | 6.827085e-50 | -8.615850e-47 |
| Msa0309720 | Msa0316430 | 0.803559 | 3.289985e-49 | -8.615850e-47 |
| Msa0309720 | Msa0326710 | 0.807109 | 5.935998e-50 | -8.615850e-47 |
| Msa0309720 | Msa0385310 | 0.805625 | 1.219307e-49 | -8.615850e-47 |
| Msa0309720 | Msa0386810 | 0.830543 | 2.768714e-55 | -8.615850e-47 |
| Msa0309720 | Msa0430230 | 0.814487 | 1.502628e-51 | -8.615850e-47 |
| Msa0309720 | Msa0523110 | 0.815934 | 7.166960e-52 | -8.615850e-47 |
| Msa0309720 | Msa0523510 | 0.804777 | 1.835552e-49 | -8.615850e-47 |
| Msa0309720 | Msa0550020 | 0.818010 | 2.450230e-52 | -8.615850e-47 |
| Msa0309720 | Msa0567610 | 0.809032 | 2.311624e-50 | -8.615850e-47 |
| Msa0309720 | Msa0586450 | 0.817030 | 4.073784e-52 | -8.615850e-47 |
| Msa0309720 | Msa0623900 | 0.805410 | 1.352963e-49 | -8.615850e-47 |
| Msa0309720 | Msa0623910 | 0.803435 | 3.490483e-49 | -8.615850e-47 |
| Msa0309720 | Msa0626460 | 0.804614 | 1.984960e-49 | -8.615850e-47 |
| Msa0309720 | Msa0703950 | 0.814217 | 1.723750e-51 | -8.615850e-47 |
| Msa0309720 | Msa0758030 | 0.800013 | 1.758650e-48 | -8.615850e-47 |
| Msa0309720 | Msa0820140 | 0.825521 | 4.479726e-54 | -8.615850e-47 |
| Msa0309720 | Msa0851160 | 0.805294 | 1.430758e-49 | -8.615850e-47 |
| Msa0309720 | Msa1039350 | 0.801885 | 7.289610e-49 | -8.615850e-47 |
| Msa0309720 | Msa1065890 | 0.803340 | 3.653562e-49 | -8.615850e-47 |
| Msa0309720 | Msa1145300 | 0.832598 | 8.626154e-56 | -8.615850e-47 |
| Msa0309720 | Msa1165090 | 0.824079 | 9.801866e-54 | -8.615850e-47 |
| Msa0309720 | Msa1196640 | 0.800085 | 1.700530e-48 | -8.615850e-47 |
| Msa0309720 | Msa1207190 | 0.829352 | 5.399993e-55 | -8.615850e-47 |
| Msa0309720 | Msa1219830 | 0.818419 | 1.979610e-52 | -8.615850e-47 |
| Msa0309720 | Msa1257440 | 0.832535 | 8.943584e-56 | -8.615850e-47 |
| Msa0309720 | Msa1305250 | 0.827471 | 1.536385e-54 | -8.615850e-47 |
| Msa0309720 | Msa1373170 | 0.807672 | 4.508123e-50 | -8.615850e-47 |
| Msa0309720 | Msa1383820 | 0.811993 | 5.300889e-51 | -8.615850e-47 |
| Msa0309720 | Msa1457890 | 0.900879 | 4.705211e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309720 | MtrunA17_Chr2g0278311 | 97.860 | 514 | 10 | 1 | 1 | 514 | 1 | 513 | 0.0 | 1028 |
| Msa0309720 | MtrunA17_Chr8g0344451 | 55.172 | 493 | 212 | 5 | 24 | 514 | 20 | 505 | 0.0 | 558 |
| Msa0309720 | MtrunA17_Chr5g0428321 | 52.381 | 525 | 234 | 6 | 4 | 514 | 19 | 541 | 0.0 | 537 |
| Msa0309720 | MtrunA17_Chr8g0334581 | 42.262 | 504 | 238 | 9 | 24 | 514 | 28 | 491 | 1.38e-132 | 394 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309720 | AT2G01070.1 | 64.427 | 506 | 158 | 6 | 10 | 514 | 12 | 496 | 0.0 | 664 |
| Msa0309720 | AT2G01070.2 | 64.602 | 452 | 147 | 2 | 10 | 460 | 12 | 451 | 0.0 | 614 |
| Msa0309720 | AT1G72480.1 | 53.737 | 495 | 221 | 4 | 24 | 514 | 19 | 509 | 0.0 | 550 |
| Msa0309720 | AT1G61670.1 | 47.266 | 512 | 250 | 6 | 12 | 514 | 13 | 513 | 3.89e-158 | 460 |
| Msa0309720 | AT1G61670.2 | 47.266 | 512 | 250 | 6 | 12 | 514 | 13 | 513 | 3.89e-158 | 460 |
| Msa0309720 | AT1G10980.1 | 36.495 | 485 | 284 | 9 | 15 | 481 | 16 | 494 | 1.17e-101 | 315 |
Find 156 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAAGTTCTATGTATTTA+TGG | 0.124995 | 2_4:+4360411 | Msa0309720:CDS |
| GATATAGGCGGTTCTGTTTA+TGG | 0.176908 | 2_4:+4360091 | Msa0309720:CDS |
| TCCTTCAGTATGTGAGGTTT+TGG | 0.183086 | 2_4:+4360467 | Msa0309720:CDS |
| AATACATAGAACTTCTTTAA+TGG | 0.194510 | 2_4:-4360406 | None:intergenic |
| AGTTCTTCCTGATGCTTTCT+TGG | 0.210058 | 2_4:+4360834 | Msa0309720:CDS |
| TACATGATATAAAACCATTT+TGG | 0.214692 | 2_4:-4363103 | None:intergenic |
| CTCTGCCAGCGCTCATTAAA+TGG | 0.223361 | 2_4:-4362393 | None:intergenic |
| CTCTCTGTTTCCATGGGTTA+TGG | 0.230696 | 2_4:+4360670 | Msa0309720:CDS |
| CTTGGATCATCACTGCATTC+TGG | 0.238611 | 2_4:+4362418 | Msa0309720:CDS |
| ATCTCAGCTGTTATTGGTCT+TGG | 0.253254 | 2_4:+4360517 | Msa0309720:CDS |
| CCTTCCAGATACATCATTAA+TGG | 0.253854 | 2_4:-4360797 | None:intergenic |
| ACGAGTCAGAAGAGGATAAA+AGG | 0.254497 | 2_4:+4362921 | Msa0309720:CDS |
| TCACATTCTTTGTTCCAAAA+TGG | 0.256294 | 2_4:+4363089 | Msa0309720:three_prime_UTR |
| AAAACGGAGTTCTGTTAAAT+TGG | 0.268399 | 2_4:+4361073 | Msa0309720:CDS |
| TAGAATCTAAACTGATAATT+CGG | 0.281464 | 2_4:-4360249 | None:intergenic |
| AATTATCAGTTTAGATTCTA+AGG | 0.283013 | 2_4:+4360252 | Msa0309720:CDS |
| ATACATAGAACTTCTTTAAT+GGG | 0.287896 | 2_4:-4360405 | None:intergenic |
| CTTCTGCAACTGACACTAAT+TGG | 0.289421 | 2_4:+4360191 | Msa0309720:CDS |
| TCTGTGTTATATGTTATCTC+TGG | 0.300146 | 2_4:+4362463 | Msa0309720:CDS |
| CACTGTATCTCAGCTGTTAT+TGG | 0.316682 | 2_4:+4360511 | Msa0309720:CDS |
| GTAAGCAAGGAGAGGTTATC+AGG | 0.319461 | 2_4:+4360164 | Msa0309720:CDS |
| CAATGCACCTTTGAGAACTT+TGG | 0.323697 | 2_4:-4362494 | None:intergenic |
| TGATATTGTTAATGCTGAAT+TGG | 0.330626 | 2_4:-4359147 | None:intergenic |
| TGATTCCAGTATTGTTGAAA+TGG | 0.337002 | 2_4:-4360576 | None:intergenic |
| ATGTTTGCCTTGGCATTGTT+TGG | 0.340723 | 2_4:+4360443 | Msa0309720:CDS |
| TCTCATTCTCTCTGTTTCCA+TGG | 0.341282 | 2_4:+4360663 | Msa0309720:CDS |
| CTCTCTTCGGCAGATGAGAT+TGG | 0.343736 | 2_4:-4359056 | None:intergenic |
| AGAATCTAAACTGATAATTC+GGG | 0.352560 | 2_4:-4360248 | None:intergenic |
| ATCACGATATCCTTGAGCTT+GGG | 0.360174 | 2_4:-4360328 | None:intergenic |
| ACCCATGTTGTGACAATAAT+AGG | 0.360700 | 2_4:-4360601 | None:intergenic |
| CACCTCTGATTTAGCTAAGA+TGG | 0.372513 | 2_4:+4360135 | Msa0309720:CDS |
| CAACATGGGTTGTCACTGTT+GGG | 0.376037 | 2_4:+4360614 | Msa0309720:CDS |
| CTCATTCTCTCTGTTTCCAT+GGG | 0.383587 | 2_4:+4360664 | Msa0309720:CDS |
| CGGTTACCTCTTCAGTTGTC+TGG | 0.383647 | 2_4:+4361132 | Msa0309720:CDS |
| AGAAGCCATGTCTCTAACTA+AGG | 0.392626 | 2_4:+4362814 | Msa0309720:CDS |
| TGATGAGCGGGAAGACAATC+TGG | 0.393173 | 2_4:+4360347 | Msa0309720:CDS |
| CGTCTTCCCCGACCCTCAAT+AGG | 0.393505 | 2_4:+4363015 | Msa0309720:three_prime_UTR |
| TATGCCCATTTCAACAATAC+TGG | 0.400524 | 2_4:+4360571 | Msa0309720:CDS |
| GGGACCATTAATGATGTATC+TGG | 0.401387 | 2_4:+4360793 | Msa0309720:CDS |
| GATTGTTTGAGATGATTCTC+TGG | 0.401399 | 2_4:+4360539 | Msa0309720:CDS |
| AATGCACCTTTGAGAACTTT+GGG | 0.404433 | 2_4:-4362493 | None:intergenic |
| TTGGATCATCACTGCATTCT+GGG | 0.410672 | 2_4:+4362419 | Msa0309720:CDS |
| CGTTGCAACTTCACTCTCTT+CGG | 0.410843 | 2_4:-4359069 | None:intergenic |
| CTTTAATGGGGCCATTCTAC+CGG | 0.417526 | 2_4:-4360392 | None:intergenic |
| CTGTTAAATTGGATATATAC+AGG | 0.420090 | 2_4:+4361084 | Msa0309720:CDS |
| GGTTTGAAAATATAACCATT+AGG | 0.433202 | 2_4:+4359993 | Msa0309720:intron |
| AACACCTCCTATTGAGGGTC+GGG | 0.433247 | 2_4:-4363022 | None:intergenic |
| GCGCTGGCTTATGTTTGCCT+TGG | 0.439178 | 2_4:+4360433 | Msa0309720:CDS |
| CTTCTCTCCGGTGGCAGTGA+AGG | 0.450618 | 2_4:+4359311 | Msa0309720:CDS |
| GAAGTTTCTATCACAAAGAC+TGG | 0.455857 | 2_4:+4360274 | Msa0309720:CDS |
| ATGAGCGCTGGCAGAGTGCT+TGG | 0.457803 | 2_4:+4362400 | Msa0309720:CDS |
| CATCAGAAGATGCATCAGTT+TGG | 0.459499 | 2_4:-4362889 | None:intergenic |
| GATTCCAGTATTGTTGAAAT+GGG | 0.459867 | 2_4:-4360575 | None:intergenic |
| GCTGCTGATCGTGATGATAT+AGG | 0.468825 | 2_4:+4360076 | Msa0309720:CDS |
| AAGGAGAAATAAGTTTAGTC+AGG | 0.470161 | 2_4:+4362852 | Msa0309720:CDS |
| CGAGTCAGAAGAGGATAAAA+GGG | 0.471974 | 2_4:+4362922 | Msa0309720:CDS |
| AGTTGTCTGGATAGGTTATG+AGG | 0.475557 | 2_4:+4361145 | Msa0309720:CDS |
| ATATAAATGAAAATAAATAT+AGG | 0.476046 | 2_4:-4359223 | None:intergenic |
| CATTATAGATCTATATTTCA+AGG | 0.482028 | 2_4:+4360219 | Msa0309720:CDS |
| ACCTCTTCAGTTGTCTGGAT+AGG | 0.482984 | 2_4:+4361137 | Msa0309720:CDS |
| GTAAGAACGGCCGTCGTGGA+TGG | 0.486797 | 2_4:-4359372 | None:intergenic |
| GGTGTTGTGCGACCCACTCT+TGG | 0.487087 | 2_4:+4360691 | Msa0309720:CDS |
| CGTCGTGGATGGAATCGGTA+TGG | 0.488362 | 2_4:-4359361 | None:intergenic |
| CTGTGTTATATGTTATCTCT+GGG | 0.488675 | 2_4:+4362464 | Msa0309720:CDS |
| TAAGGTATAAAGAGAGAGAA+GGG | 0.489179 | 2_4:+4358992 | None:intergenic |
| TTTACAACACCTCCTATTGA+GGG | 0.489243 | 2_4:-4363027 | None:intergenic |
| TGGCACGGTACCACGCGCCC+TGG | 0.493484 | 2_4:-4360032 | None:intergenic |
| AATGCGTCCAAGAAAGCATC+AGG | 0.493522 | 2_4:-4360841 | None:intergenic |
| CATCACGATATCCTTGAGCT+TGG | 0.496078 | 2_4:-4360329 | None:intergenic |
| GGTATGGGAAGCGGTGGAGA+TGG | 0.496727 | 2_4:-4359345 | None:intergenic |
| ATCTTCCTTGTCAGGCAAAA+CGG | 0.497564 | 2_4:+4361057 | Msa0309720:intron |
| ACAACATGGGTTGTCACTGT+TGG | 0.499602 | 2_4:+4360613 | Msa0309720:CDS |
| ACCTCTGATTTAGCTAAGAT+GGG | 0.503600 | 2_4:+4360136 | Msa0309720:CDS |
| ATAAATATAGGAGGAGGAGA+AGG | 0.506335 | 2_4:-4359211 | None:intergenic |
| GATGGAATCGGTATGGGAAG+CGG | 0.507575 | 2_4:-4359354 | None:intergenic |
| ACGACGGCCGTTCTTACATT+CGG | 0.509858 | 2_4:+4359378 | Msa0309720:CDS |
| AGTAAGTTACTCCAAGCAAA+AGG | 0.517304 | 2_4:-4360732 | None:intergenic |
| GCTAGATCCGCGCGTGTATG+TGG | 0.518173 | 2_4:+4359017 | Msa0309720:five_prime_UTR |
| CTTTCCCTTAGTTAGAGACA+TGG | 0.519744 | 2_4:-4362819 | None:intergenic |
| GGAGAAGAAAATCTGCAGCC+AGG | 0.520643 | 2_4:+4360014 | Msa0309720:CDS |
| GTAAGGTATAAAGAGAGAGA+AGG | 0.522767 | 2_4:+4358991 | None:intergenic |
| AAATATAGATCTATAATGAC+TGG | 0.523698 | 2_4:-4360214 | None:intergenic |
| GTTCTATGTATTTATGGCGC+TGG | 0.529730 | 2_4:+4360417 | Msa0309720:CDS |
| CACTTAATTCAATAGTCAGT+GGG | 0.530389 | 2_4:-4363206 | None:intergenic |
| ACGGCCGTCGTGGATGGAAT+CGG | 0.533314 | 2_4:-4359366 | None:intergenic |
| GGCGATGCCTTCACTGCCAC+CGG | 0.538309 | 2_4:-4359318 | None:intergenic |
| TTTAATGGGGCCATTCTACC+GGG | 0.539654 | 2_4:-4360391 | None:intergenic |
| CACCTTTGAGAACTTTGGGA+AGG | 0.540818 | 2_4:-4362489 | None:intergenic |
| TTGAGACTTGAAAACCCAGC+AGG | 0.541326 | 2_4:-4362990 | None:intergenic |
| GTGGGATTTCCTAGTATGCA+AGG | 0.542253 | 2_4:-4363188 | None:intergenic |
| ATTATAGATCTATATTTCAA+GGG | 0.543479 | 2_4:+4360220 | Msa0309720:CDS |
| CAGATCCATTTAATGAGCGC+TGG | 0.543799 | 2_4:+4362388 | Msa0309720:CDS |
| GCATTGCCGACATCTTGAAA+AGG | 0.544373 | 2_4:-4359284 | None:intergenic |
| TCACGATATCCTTGAGCTTG+GGG | 0.544856 | 2_4:-4360327 | None:intergenic |
| CTCAAGGATATCGTGATGAG+CGG | 0.547215 | 2_4:+4360334 | Msa0309720:CDS |
| ATGGGAAGCGGTGGAGATGG+AGG | 0.547800 | 2_4:-4359342 | None:intergenic |
| ATGAAAATAAATATAGGAGG+AGG | 0.561523 | 2_4:-4359217 | None:intergenic |
| AAGATGGGAGCTTGTAAGCA+AGG | 0.563186 | 2_4:+4360151 | Msa0309720:CDS |
| GTCGTGGATGGAATCGGTAT+GGG | 0.564130 | 2_4:-4359360 | None:intergenic |
| TTTGGCTCCTTCAGTATGTG+AGG | 0.564366 | 2_4:+4360461 | Msa0309720:CDS |
| GATGTAAGACCGCCAAGAGT+GGG | 0.569323 | 2_4:-4360703 | None:intergenic |
| CTCAAATGCACTAGTAGTAA+CGG | 0.569649 | 2_4:+4361112 | Msa0309720:CDS |
| TCAAGGATATCGTGATGAGC+GGG | 0.571538 | 2_4:+4360335 | Msa0309720:CDS |
| GAAGCCATGTCTCTAACTAA+GGG | 0.572177 | 2_4:+4362815 | Msa0309720:CDS |
| CTAACTAAGGGAAAGCAAGA+AGG | 0.572370 | 2_4:+4362827 | Msa0309720:CDS |
| GGAAGCGGTGGAGATGGAGG+CGG | 0.573916 | 2_4:-4359339 | None:intergenic |
| CGCCTTCCCAAAGTTCTCAA+AGG | 0.574890 | 2_4:+4362487 | Msa0309720:CDS |
| GACCTATTATTGTCACAACA+TGG | 0.575906 | 2_4:+4360599 | Msa0309720:CDS |
| CAACACCTCCTATTGAGGGT+CGG | 0.576156 | 2_4:-4363023 | None:intergenic |
| TGATGTAAGACCGCCAAGAG+TGG | 0.580462 | 2_4:-4360704 | None:intergenic |
| AATTATAATGTGCATTGGCA+CGG | 0.581245 | 2_4:-4360047 | None:intergenic |
| TACATAGAACTTCTTTAATG+GGG | 0.583432 | 2_4:-4360404 | None:intergenic |
| CTTCCCCGACCCTCAATAGG+AGG | 0.586533 | 2_4:+4363018 | Msa0309720:three_prime_UTR |
| GAGAAGAAAATCTGCAGCCA+GGG | 0.587661 | 2_4:+4360015 | Msa0309720:CDS |
| AAATCTGCAGCCAGGGCGCG+TGG | 0.589551 | 2_4:+4360022 | Msa0309720:CDS |
| TAAATGAAAATAAATATAGG+AGG | 0.589650 | 2_4:-4359220 | None:intergenic |
| ACCTATCCAGACAACTGAAG+AGG | 0.593355 | 2_4:-4361138 | None:intergenic |
| GAATGTAAGAACGGCCGTCG+TGG | 0.596570 | 2_4:-4359376 | None:intergenic |
| TCTTGGCGGTCTTACATCAA+AGG | 0.598039 | 2_4:+4360708 | Msa0309720:CDS |
| ACCTATTATTGTCACAACAT+GGG | 0.599977 | 2_4:+4360600 | Msa0309720:CDS |
| AGCTTGTGACCCCAAGCTCA+AGG | 0.601127 | 2_4:+4360318 | Msa0309720:CDS |
| CAATTAGTGTCAGTTGCAGA+AGG | 0.601312 | 2_4:-4360190 | None:intergenic |
| CCATTAATGATGTATCTGGA+AGG | 0.601632 | 2_4:+4360797 | Msa0309720:CDS |
| GTTGTGCGACCCACTCTTGG+CGG | 0.604378 | 2_4:+4360694 | Msa0309720:CDS |
| TCGCACAACACCATAACCCA+TGG | 0.605397 | 2_4:-4360680 | None:intergenic |
| GTACGCATACTCAGAGAAAG+TGG | 0.606384 | 2_4:+4362772 | Msa0309720:CDS |
| GATGTGGATGGATGCAAATG+AGG | 0.606399 | 2_4:-4359249 | None:intergenic |
| GGAATCGGTATGGGAAGCGG+TGG | 0.607092 | 2_4:-4359351 | None:intergenic |
| TGAAGAAGATGCGAACAACA+TGG | 0.608610 | 2_4:-4359186 | None:intergenic |
| AAGGGAAAGCAAGAAGGACA+AGG | 0.611902 | 2_4:+4362833 | Msa0309720:CDS |
| CTGAATATAACTGAATACGT+GGG | 0.613072 | 2_4:+4360772 | Msa0309720:CDS |
| CATTAATGATGTATCTGGAA+GGG | 0.613255 | 2_4:+4360798 | Msa0309720:CDS |
| TGAAGATGACGAGTCAGAAG+AGG | 0.617368 | 2_4:+4362913 | Msa0309720:CDS |
| CCCAAAACCTCACATACTGA+AGG | 0.620914 | 2_4:-4360468 | None:intergenic |
| TTATAGATCTATATTTCAAG+GGG | 0.621028 | 2_4:+4360221 | Msa0309720:CDS |
| AACATGGGTTGTCACTGTTG+GGG | 0.621382 | 2_4:+4360615 | Msa0309720:CDS |
| AAGGTTCGCGATTGTAGATG+TGG | 0.624736 | 2_4:-4359265 | None:intergenic |
| ACACTTAATTCAATAGTCAG+TGG | 0.627581 | 2_4:-4363207 | None:intergenic |
| ACACCTCCTATTGAGGGTCG+GGG | 0.627766 | 2_4:-4363021 | None:intergenic |
| TCCCATCTTAGCTAAATCAG+AGG | 0.631969 | 2_4:-4360137 | None:intergenic |
| TTCGCGATTGTAGATGTGGA+TGG | 0.634523 | 2_4:-4359261 | None:intergenic |
| GGGAGCTTGTAAGCAAGGAG+AGG | 0.639731 | 2_4:+4360156 | Msa0309720:CDS |
| GAAGGAGCCAAACAATGCCA+AGG | 0.641996 | 2_4:-4360450 | None:intergenic |
| TGGGATTTCCTAGTATGCAA+GGG | 0.654291 | 2_4:-4363187 | None:intergenic |
| AGCATTACCGAATGTAAGAA+CGG | 0.655590 | 2_4:-4359385 | None:intergenic |
| AACTACACCACATACACGCG+CGG | 0.660131 | 2_4:-4359024 | None:intergenic |
| TGAGACTTGAAAACCCAGCA+GGG | 0.660881 | 2_4:-4362989 | None:intergenic |
| GCTGAATATAACTGAATACG+TGG | 0.662152 | 2_4:+4360771 | Msa0309720:CDS |
| TACGCATACTCAGAGAAAGT+GGG | 0.662515 | 2_4:+4362773 | Msa0309720:CDS |
| AAGAAGATCACAATTCAACT+CGG | 0.664502 | 2_4:-4359098 | None:intergenic |
| CAGGGAAAACAGTACAGACG+TGG | 0.678840 | 2_4:-4362971 | None:intergenic |
| ATAGGCGGTTCTGTTTATGG+AGG | 0.681454 | 2_4:+4360094 | Msa0309720:CDS |
| ATGATGTATCTGGAAGGGCA+AGG | 0.685625 | 2_4:+4360803 | Msa0309720:CDS |
| TGAATATAACTGAATACGTG+GGG | 0.689783 | 2_4:+4360773 | Msa0309720:CDS |
| GCTGATCGTGATGATATAGG+CGG | 0.712191 | 2_4:+4360079 | Msa0309720:CDS |
| CATACCGATTCCATCCACGA+CGG | 0.807287 | 2_4:+4359362 | Msa0309720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTGTTAATTATATGTT+AGG | + | chr2_4:4359783-4359802 | Msa0309720:intron | 10.0% |
| !! | ATATTGTTAATTATATGTTA+GGG | + | chr2_4:4359784-4359803 | Msa0309720:intron | 10.0% |
| !! | TAAATGAAAATAAATATAGG+AGG | - | chr2_4:4359223-4359242 | None:intergenic | 15.0% |
| !!! | CAAATTGATTTTGAAATATT+TGG | + | chr2_4:4359634-4359653 | Msa0309720:intron | 15.0% |
| !! | TATTGTTAATTATATGTTAG+GGG | + | chr2_4:4359785-4359804 | Msa0309720:intron | 15.0% |
| !! | ATTATAGATCTATATTTCAA+GGG | + | chr2_4:4360220-4360239 | Msa0309720:CDS | 15.0% |
| !!! | TAGTATTTATTATTTTTTCC+TGG | + | chr2_4:4361731-4361750 | Msa0309720:intron | 15.0% |
| !!! | AGTATTTATTATTTTTTCCT+GGG | + | chr2_4:4361732-4361751 | Msa0309720:intron | 15.0% |
| !! | GTAAAATAAAATTGATCAAA+TGG | + | chr2_4:4362112-4362131 | Msa0309720:intron | 15.0% |
| !! | TTAGGAATTGTATAATTTGA+TGG | + | chr2_4:4359550-4359569 | Msa0309720:intron | 20.0% |
| !! | GAAATGTAAAAAATTGCATA+TGG | + | chr2_4:4359733-4359752 | Msa0309720:intron | 20.0% |
| !! | TCAAAAATTATAATGTGCAT+TGG | - | chr2_4:4360055-4360074 | None:intergenic | 20.0% |
| !!! | AATGCACATTATAATTTTTG+AGG | + | chr2_4:4360054-4360073 | Msa0309720:CDS | 20.0% |
| !! | AAATATAGATCTATAATGAC+TGG | - | chr2_4:4360217-4360236 | None:intergenic | 20.0% |
| !! | CATTATAGATCTATATTTCA+AGG | + | chr2_4:4360219-4360238 | Msa0309720:CDS | 20.0% |
| !! | TTATAGATCTATATTTCAAG+GGG | + | chr2_4:4360221-4360240 | Msa0309720:CDS | 20.0% |
| !! | TAGAATCTAAACTGATAATT+CGG | - | chr2_4:4360252-4360271 | None:intergenic | 20.0% |
| !! | AATTATCAGTTTAGATTCTA+AGG | + | chr2_4:4360252-4360271 | Msa0309720:CDS | 20.0% |
| !! | ATACATAGAACTTCTTTAAT+GGG | - | chr2_4:4360408-4360427 | None:intergenic | 20.0% |
| !! | AATACATAGAACTTCTTTAA+TGG | - | chr2_4:4360409-4360428 | None:intergenic | 20.0% |
| !! | AAAGAAGTTCTATGTATTTA+TGG | + | chr2_4:4360411-4360430 | Msa0309720:CDS | 20.0% |
| !!! | TTATTTTGTGCAATATAACA+TGG | + | chr2_4:4361189-4361208 | Msa0309720:intron | 20.0% |
| !! | AAGACAAAGTAAATTAAAGT+CGG | - | chr2_4:4361336-4361355 | None:intergenic | 20.0% |
| !!! | AGAAATATTAACTTGTTGAA+TGG | + | chr2_4:4361701-4361720 | Msa0309720:intron | 20.0% |
| !!! | GATTTTCTTATTATTTTCTC+AGG | - | chr2_4:4361825-4361844 | None:intergenic | 20.0% |
| !!! | TGTTTTCTTGATATTTGATA+CGG | - | chr2_4:4361946-4361965 | None:intergenic | 20.0% |
| !! | ACAAATTATTAATAGAGAAG+AGG | + | chr2_4:4361963-4361982 | Msa0309720:intron | 20.0% |
| !! | CAAATTATTAATAGAGAAGA+GGG | + | chr2_4:4361964-4361983 | Msa0309720:intron | 20.0% |
| !!! | ATTTAGTTTCCAATTTTTTG+AGG | - | chr2_4:4362015-4362034 | None:intergenic | 20.0% |
| !!! | AAAATTTTGTTCATTTGTAC+TGG | + | chr2_4:4363047-4363066 | Msa0309720:three_prime_UTR | 20.0% |
| !!! | TACATGATATAAAACCATTT+TGG | - | chr2_4:4363106-4363125 | None:intergenic | 20.0% |
| ! | TGATATTGTTAATGCTGAAT+TGG | - | chr2_4:4359150-4359169 | None:intergenic | 25.0% |
| ! | ATGAAAATAAATATAGGAGG+AGG | - | chr2_4:4359220-4359239 | None:intergenic | 25.0% |
| ! | ACAGAAATGTTGATATGAAT+TGG | - | chr2_4:4359529-4359548 | None:intergenic | 25.0% |
| ! | CAAGTTAGAATCAATTCTAA+AGG | - | chr2_4:4359685-4359704 | None:intergenic | 25.0% |
| !!! | ATGGAGTTACATTTTTTTAG+TGG | + | chr2_4:4359752-4359771 | Msa0309720:intron | 25.0% |
| !! | AACATATAAGGTAGGTTTTA+TGG | - | chr2_4:4359867-4359886 | None:intergenic | 25.0% |
| ! | TCATCGTATATGGATTTATA+TGG | + | chr2_4:4359892-4359911 | Msa0309720:intron | 25.0% |
| ! | TGACATATCATTCAAATATG+AGG | - | chr2_4:4359931-4359950 | None:intergenic | 25.0% |
| ! | GGTTTGAAAATATAACCATT+AGG | + | chr2_4:4359993-4360012 | Msa0309720:intron | 25.0% |
| ! | AGAATCTAAACTGATAATTC+GGG | - | chr2_4:4360251-4360270 | None:intergenic | 25.0% |
| ! | TACATAGAACTTCTTTAATG+GGG | - | chr2_4:4360407-4360426 | None:intergenic | 25.0% |
| ! | CAATAAGAAAAACAATAGCA+CGG | + | chr2_4:4360638-4360657 | Msa0309720:CDS | 25.0% |
| ! | TTGAGCAAATATAATAGGTA+CGG | - | chr2_4:4360942-4360961 | None:intergenic | 25.0% |
| ! | AACAGAAAAATTTAGAGGTA+GGG | - | chr2_4:4360985-4361004 | None:intergenic | 25.0% |
| ! | TAACAGAAAAATTTAGAGGT+AGG | - | chr2_4:4360986-4361005 | None:intergenic | 25.0% |
| !! | ACCTCTAAATTTTTCTGTTA+TGG | + | chr2_4:4360986-4361005 | Msa0309720:intron | 25.0% |
| ! | TCCATAACAGAAAAATTTAG+AGG | - | chr2_4:4360990-4361009 | None:intergenic | 25.0% |
| ! | CAAACATATTTGAAAAAAGG+AGG | - | chr2_4:4361024-4361043 | None:intergenic | 25.0% |
| !!! | CTCCTTTTTTCAAATATGTT+TGG | + | chr2_4:4361022-4361041 | Msa0309720:intron | 25.0% |
| ! | TGCCAAACATATTTGAAAAA+AGG | - | chr2_4:4361027-4361046 | None:intergenic | 25.0% |
| ! | CTGTTAAATTGGATATATAC+AGG | + | chr2_4:4361084-4361103 | Msa0309720:CDS | 25.0% |
| ! | ATTTCAGTTACTAATACAAG+AGG | - | chr2_4:4361216-4361235 | None:intergenic | 25.0% |
| !!! | GGATTGGACTTTTTTTTTTT+GGG | - | chr2_4:4361314-4361333 | None:intergenic | 25.0% |
| ! | AGACAAAGTAAATTAAAGTC+GGG | - | chr2_4:4361335-4361354 | None:intergenic | 25.0% |
| ! | AATAGGAAATATAAAGGAAC+AGG | - | chr2_4:4361411-4361430 | None:intergenic | 25.0% |
| ! | GTGAGAAATAGGAAATATAA+AGG | - | chr2_4:4361417-4361436 | None:intergenic | 25.0% |
| ! | ATAGAGTAATGTGATTTATC+TGG | + | chr2_4:4361448-4361467 | Msa0309720:intron | 25.0% |
| ! | AATGAGTGAAAATAACTTAC+AGG | + | chr2_4:4361481-4361500 | Msa0309720:intron | 25.0% |
| !!! | ATAACAAGCCTTATTCTAAT+AGG | - | chr2_4:4361915-4361934 | None:intergenic | 25.0% |
| ! | GTAAAGTTAGCATATATTGA+TGG | - | chr2_4:4362344-4362363 | None:intergenic | 25.0% |
| !!! | TATGCTAACTTTACTTTTAC+AGG | + | chr2_4:4362350-4362369 | Msa0309720:intron | 25.0% |
| ! | TTGAAATTTACAATGTTGTG+TGG | + | chr2_4:4362596-4362615 | Msa0309720:intron | 25.0% |
| ! | TGAAATTTACAATGTTGTGT+GGG | + | chr2_4:4362597-4362616 | Msa0309720:intron | 25.0% |
| !!! | TGTTTTTTGCCCTTTTTTTA+CGG | - | chr2_4:4362654-4362673 | None:intergenic | 25.0% |
| AAGAAGATCACAATTCAACT+CGG | - | chr2_4:4359101-4359120 | None:intergenic | 30.0% | |
| ! | TCTCTTTTGAGCATTCTTTT+CGG | + | chr2_4:4359120-4359139 | Msa0309720:five_prime_UTR | 30.0% |
| TTACTTATGCACACTTTAGA+TGG | + | chr2_4:4359433-4359452 | Msa0309720:intron | 30.0% | |
| CATATCAACATTTCTGTCTT+AGG | + | chr2_4:4359532-4359551 | Msa0309720:intron | 30.0% | |
| ! | AGATAAATAGTGGAGTGATA+AGG | - | chr2_4:4359832-4359851 | None:intergenic | 30.0% |
| !! | ATAAGGTAGGTTTTATGGTT+GGG | - | chr2_4:4359862-4359881 | None:intergenic | 30.0% |
| !! | TATAAGGTAGGTTTTATGGT+TGG | - | chr2_4:4359863-4359882 | None:intergenic | 30.0% |
| TGAGATGTAACATATAAGGT+AGG | - | chr2_4:4359875-4359894 | None:intergenic | 30.0% | |
| ACGATGAGATGTAACATATA+AGG | - | chr2_4:4359879-4359898 | None:intergenic | 30.0% | |
| ATGTTACATCTCATCGTATA+TGG | + | chr2_4:4359882-4359901 | Msa0309720:intron | 30.0% | |
| ! | AATTATAATGTGCATTGGCA+CGG | - | chr2_4:4360050-4360069 | None:intergenic | 30.0% |
| GATTCCAGTATTGTTGAAAT+GGG | - | chr2_4:4360578-4360597 | None:intergenic | 30.0% | |
| TGATTCCAGTATTGTTGAAA+TGG | - | chr2_4:4360579-4360598 | None:intergenic | 30.0% | |
| ACCTATTATTGTCACAACAT+GGG | + | chr2_4:4360600-4360619 | Msa0309720:CDS | 30.0% | |
| CTGAATATAACTGAATACGT+GGG | + | chr2_4:4360772-4360791 | Msa0309720:CDS | 30.0% | |
| TGAATATAACTGAATACGTG+GGG | + | chr2_4:4360773-4360792 | Msa0309720:CDS | 30.0% | |
| CATTAATGATGTATCTGGAA+GGG | + | chr2_4:4360798-4360817 | Msa0309720:CDS | 30.0% | |
| !!! | TGGACGCATTTTTGATTTTA+TGG | + | chr2_4:4360854-4360873 | Msa0309720:CDS | 30.0% |
| AAAAACACTAGAACAGTTAC+AGG | + | chr2_4:4360894-4360913 | Msa0309720:CDS | 30.0% | |
| TGAGCAAATATAATAGGTAC+GGG | - | chr2_4:4360941-4360960 | None:intergenic | 30.0% | |
| GGAACTTGAGCAAATATAAT+AGG | - | chr2_4:4360947-4360966 | None:intergenic | 30.0% | |
| AAAACGGAGTTCTGTTAAAT+TGG | + | chr2_4:4361073-4361092 | Msa0309720:CDS | 30.0% | |
| !!! | GGGATTGGACTTTTTTTTTT+TGG | - | chr2_4:4361315-4361334 | None:intergenic | 30.0% |
| AAGTAAATTAAAGTCGGGAT+TGG | - | chr2_4:4361330-4361349 | None:intergenic | 30.0% | |
| ! | TATTTCCTATTTCTCACAAG+TGG | + | chr2_4:4361420-4361439 | Msa0309720:intron | 30.0% |
| ! | TTTTACCACTTGTGAGAAAT+AGG | - | chr2_4:4361428-4361447 | None:intergenic | 30.0% |
| AGTGAAAATAACTTACAGGA+AGG | + | chr2_4:4361485-4361504 | Msa0309720:intron | 30.0% | |
| TGTGAGAAAAAAAAACGAAG+AGG | + | chr2_4:4361772-4361791 | Msa0309720:intron | 30.0% | |
| ACCTTCTACCTATTAGAATA+AGG | + | chr2_4:4361904-4361923 | Msa0309720:intron | 30.0% | |
| TCAAGGAAACCTCAAAAAAT+TGG | + | chr2_4:4362003-4362022 | Msa0309720:intron | 30.0% | |
| ! | ATGCATTTTTCTCGTTCATT+TGG | - | chr2_4:4362059-4362078 | None:intergenic | 30.0% |
| TGAATCAAGTGATGACTAAA+TGG | + | chr2_4:4362139-4362158 | Msa0309720:intron | 30.0% | |
| GAATCAAGTGATGACTAAAT+GGG | + | chr2_4:4362140-4362159 | Msa0309720:intron | 30.0% | |
| ! | AAATGGGATTCTTCATTTTG+TGG | + | chr2_4:4362156-4362175 | Msa0309720:intron | 30.0% |
| TCTGTGTTATATGTTATCTC+TGG | + | chr2_4:4362463-4362482 | Msa0309720:CDS | 30.0% | |
| CTGTGTTATATGTTATCTCT+GGG | + | chr2_4:4362464-4362483 | Msa0309720:CDS | 30.0% | |
| AGTAGTAAAGCCGTAAAAAA+AGG | + | chr2_4:4362641-4362660 | Msa0309720:intron | 30.0% | |
| GTAGTAAAGCCGTAAAAAAA+GGG | + | chr2_4:4362642-4362661 | Msa0309720:intron | 30.0% | |
| AAGGAGAAATAAGTTTAGTC+AGG | + | chr2_4:4362852-4362871 | Msa0309720:CDS | 30.0% | |
| TCACATTCTTTGTTCCAAAA+TGG | + | chr2_4:4363089-4363108 | Msa0309720:three_prime_UTR | 30.0% | |
| CACTTAATTCAATAGTCAGT+GGG | - | chr2_4:4363209-4363228 | None:intergenic | 30.0% | |
| ACACTTAATTCAATAGTCAG+TGG | - | chr2_4:4363210-4363229 | None:intergenic | 30.0% | |
| ATAAATATAGGAGGAGGAGA+AGG | - | chr2_4:4359214-4359233 | None:intergenic | 35.0% | |
| AGCATTACCGAATGTAAGAA+CGG | - | chr2_4:4359388-4359407 | None:intergenic | 35.0% | |
| TAGATGCTAGACTGAAATGA+AGG | + | chr2_4:4359575-4359594 | Msa0309720:intron | 35.0% | |
| AGATGCTAGACTGAAATGAA+GGG | + | chr2_4:4359576-4359595 | Msa0309720:intron | 35.0% | |
| ! | GAGCCAAAATTGATTCTAGA+GGG | + | chr2_4:4359605-4359624 | Msa0309720:intron | 35.0% |
| ! | AAATAGTGGAGTGATAAGGA+GGG | - | chr2_4:4359828-4359847 | None:intergenic | 35.0% |
| ! | TAAATAGTGGAGTGATAAGG+AGG | - | chr2_4:4359829-4359848 | None:intergenic | 35.0% |
| ! | TGCAGATTTTCTTCTCCTAA+TGG | - | chr2_4:4360011-4360030 | None:intergenic | 35.0% |
| ACCTCTGATTTAGCTAAGAT+GGG | + | chr2_4:4360136-4360155 | Msa0309720:CDS | 35.0% | |
| GAAGTTTCTATCACAAAGAC+TGG | + | chr2_4:4360274-4360293 | Msa0309720:CDS | 35.0% | |
| ! | GATTGTTTGAGATGATTCTC+TGG | + | chr2_4:4360539-4360558 | Msa0309720:CDS | 35.0% |
| TATGCCCATTTCAACAATAC+TGG | + | chr2_4:4360571-4360590 | Msa0309720:CDS | 35.0% | |
| GACCTATTATTGTCACAACA+TGG | + | chr2_4:4360599-4360618 | Msa0309720:CDS | 35.0% | |
| ACCCATGTTGTGACAATAAT+AGG | - | chr2_4:4360604-4360623 | None:intergenic | 35.0% | |
| AGTAAGTTACTCCAAGCAAA+AGG | - | chr2_4:4360735-4360754 | None:intergenic | 35.0% | |
| GCTGAATATAACTGAATACG+TGG | + | chr2_4:4360771-4360790 | Msa0309720:CDS | 35.0% | |
| CCTTCCAGATACATCATTAA+TGG | - | chr2_4:4360800-4360819 | None:intergenic | 35.0% | |
| CCATTAATGATGTATCTGGA+AGG | + | chr2_4:4360797-4360816 | Msa0309720:CDS | 35.0% | |
| CTCAAATGCACTAGTAGTAA+CGG | + | chr2_4:4361112-4361131 | Msa0309720:CDS | 35.0% | |
| GTAATATAACACAGCGAAAC+AGG | - | chr2_4:4361270-4361289 | None:intergenic | 35.0% | |
| TCCATATCACCTTTGCATTT+AGG | + | chr2_4:4361378-4361397 | Msa0309720:intron | 35.0% | |
| ACCTAAATGCAAAGGTGATA+TGG | - | chr2_4:4361382-4361401 | None:intergenic | 35.0% | |
| ! | GAATGTGTTGCATGGTATTT+TGG | - | chr2_4:4361513-4361532 | None:intergenic | 35.0% |
| ATACAACTGAATGTGTTGCA+TGG | - | chr2_4:4361521-4361540 | None:intergenic | 35.0% | |
| ATGCAACACATTCAGTTGTA+TGG | + | chr2_4:4361520-4361539 | Msa0309720:intron | 35.0% | |
| TGCAACACATTCAGTTGTAT+GGG | + | chr2_4:4361521-4361540 | Msa0309720:intron | 35.0% | |
| ! | ACAACGTAGATAAGCTCTAA+AGG | - | chr2_4:4361632-4361651 | None:intergenic | 35.0% |
| AGTGTAGAAATGCTAGCATT+TGG | + | chr2_4:4361662-4361681 | Msa0309720:intron | 35.0% | |
| TTTCCTGGGTAAATATCAAG+TGG | + | chr2_4:4361746-4361765 | Msa0309720:intron | 35.0% | |
| TATCCACTTGATATTTACCC+AGG | - | chr2_4:4361752-4361771 | None:intergenic | 35.0% | |
| AAGAGGCTTCTGATTAGAAA+AGG | + | chr2_4:4361789-4361808 | Msa0309720:intron | 35.0% | |
| AGAGGCTTCTGATTAGAAAA+GGG | + | chr2_4:4361790-4361809 | Msa0309720:intron | 35.0% | |
| ! | GCCTTATTCTAATAGGTAGA+AGG | - | chr2_4:4361908-4361927 | None:intergenic | 35.0% |
| CGAGAAAAATGCATGATCAA+AGG | + | chr2_4:4362065-4362084 | Msa0309720:intron | 35.0% | |
| GTCAAACACAAACAAAAGCA+GGG | - | chr2_4:4362217-4362236 | None:intergenic | 35.0% | |
| AGTCAAACACAAACAAAAGC+AGG | - | chr2_4:4362218-4362237 | None:intergenic | 35.0% | |
| ! | AATGCACCTTTGAGAACTTT+GGG | - | chr2_4:4362496-4362515 | None:intergenic | 35.0% |
| ATTCTAACGTCTGATTCAGA+TGG | + | chr2_4:4362696-4362715 | Msa0309720:intron | 35.0% | |
| CAAAAGAAGTGAGACTCTAT+CGG | - | chr2_4:4362725-4362744 | None:intergenic | 35.0% | |
| TTAGTCAGGCAAGAGAAAAA+TGG | + | chr2_4:4362866-4362885 | Msa0309720:CDS | 35.0% | |
| TTTACAACACCTCCTATTGA+GGG | - | chr2_4:4363030-4363049 | None:intergenic | 35.0% | |
| ! | TTTTACAACACCTCCTATTG+AGG | - | chr2_4:4363031-4363050 | None:intergenic | 35.0% |
| TGAAGAAGATGCGAACAACA+TGG | - | chr2_4:4359189-4359208 | None:intergenic | 40.0% | |
| GATGCTAGACTGAAATGAAG+GGG | + | chr2_4:4359577-4359596 | Msa0309720:intron | 40.0% | |
| ! | GGAGCCAAAATTGATTCTAG+AGG | + | chr2_4:4359604-4359623 | Msa0309720:intron | 40.0% |
| !!! | CCTCCCTCTAGAATCAATTT+TGG | - | chr2_4:4359611-4359630 | None:intergenic | 40.0% |
| ! | CCAAAATTGATTCTAGAGGG+AGG | + | chr2_4:4359608-4359627 | Msa0309720:intron | 40.0% |
| GCACTCGAGTAGAATTGATT+TGG | + | chr2_4:4359659-4359678 | Msa0309720:intron | 40.0% | |
| !!! | ACACTGACTTTTTCTGCTTG+TGG | + | chr2_4:4359964-4359983 | Msa0309720:intron | 40.0% |
| !!! | CACTGACTTTTTCTGCTTGT+GGG | + | chr2_4:4359965-4359984 | Msa0309720:intron | 40.0% |
| ! | TTTTTCTGCTTGTGGGTGAT+AGG | + | chr2_4:4359972-4359991 | Msa0309720:intron | 40.0% |
| GATATAGGCGGTTCTGTTTA+TGG | + | chr2_4:4360091-4360110 | Msa0309720:CDS | 40.0% | |
| CACCTCTGATTTAGCTAAGA+TGG | + | chr2_4:4360135-4360154 | Msa0309720:CDS | 40.0% | |
| TCCCATCTTAGCTAAATCAG+AGG | - | chr2_4:4360140-4360159 | None:intergenic | 40.0% | |
| CAATTAGTGTCAGTTGCAGA+AGG | - | chr2_4:4360193-4360212 | None:intergenic | 40.0% | |
| CTTCTGCAACTGACACTAAT+TGG | + | chr2_4:4360191-4360210 | Msa0309720:CDS | 40.0% | |
| ATCACGATATCCTTGAGCTT+GGG | - | chr2_4:4360331-4360350 | None:intergenic | 40.0% | |
| ACAATCTGGAAAAACCCTGA+TGG | + | chr2_4:4360361-4360380 | Msa0309720:CDS | 40.0% | |
| CAATCTGGAAAAACCCTGAT+GGG | + | chr2_4:4360362-4360381 | Msa0309720:CDS | 40.0% | |
| GTTCTATGTATTTATGGCGC+TGG | + | chr2_4:4360417-4360436 | Msa0309720:CDS | 40.0% | |
| ATGTTTGCCTTGGCATTGTT+TGG | + | chr2_4:4360443-4360462 | Msa0309720:CDS | 40.0% | |
| ! | TCCTTCAGTATGTGAGGTTT+TGG | + | chr2_4:4360467-4360486 | Msa0309720:CDS | 40.0% |
| ! | CCTTCAGTATGTGAGGTTTT+GGG | + | chr2_4:4360468-4360487 | Msa0309720:CDS | 40.0% |
| CACTGTATCTCAGCTGTTAT+TGG | + | chr2_4:4360511-4360530 | Msa0309720:CDS | 40.0% | |
| ! | ATCTCAGCTGTTATTGGTCT+TGG | + | chr2_4:4360517-4360536 | Msa0309720:CDS | 40.0% |
| TCTCATTCTCTCTGTTTCCA+TGG | + | chr2_4:4360663-4360682 | Msa0309720:CDS | 40.0% | |
| CTCATTCTCTCTGTTTCCAT+GGG | + | chr2_4:4360664-4360683 | Msa0309720:CDS | 40.0% | |
| ! | ACATCAAAGGTCCTTTTGCT+TGG | + | chr2_4:4360721-4360740 | Msa0309720:CDS | 40.0% |
| GGGACCATTAATGATGTATC+TGG | + | chr2_4:4360793-4360812 | Msa0309720:CDS | 40.0% | |
| AGTTCTTCCTGATGCTTTCT+TGG | + | chr2_4:4360834-4360853 | Msa0309720:CDS | 40.0% | |
| !! | GTAGGGTGCTGTAAAATAGT+AGG | - | chr2_4:4360968-4360987 | None:intergenic | 40.0% |
| ATCTTCCTTGTCAGGCAAAA+CGG | + | chr2_4:4361057-4361076 | Msa0309720:intron | 40.0% | |
| AGTTGTCTGGATAGGTTATG+AGG | + | chr2_4:4361145-4361164 | Msa0309720:CDS | 40.0% | |
| TCACCTTTGCATTTAGGTAC+CGG | + | chr2_4:4361384-4361403 | Msa0309720:intron | 40.0% | |
| GAAATATAAAGGAACAGGCC+CGG | - | chr2_4:4361406-4361425 | None:intergenic | 40.0% | |
| !! | GTAGATAAGCTCTAAAGGAG+TGG | - | chr2_4:4361627-4361646 | None:intergenic | 40.0% |
| CTTCTGATTAGAAAAGGGAG+AGG | + | chr2_4:4361795-4361814 | Msa0309720:intron | 40.0% | |
| GAGCTCAAAGAACATTGTCA+AGG | + | chr2_4:4361986-4362005 | Msa0309720:intron | 40.0% | |
| TTCTCGTTCATTTGGCTGAT+AGG | - | chr2_4:4362051-4362070 | None:intergenic | 40.0% | |
| CGTTTGAAAGAAACATCCAG+AGG | + | chr2_4:4362182-4362201 | Msa0309720:intron | 40.0% | |
| TTGGATCATCACTGCATTCT+GGG | + | chr2_4:4362419-4362438 | Msa0309720:CDS | 40.0% | |
| ! | CAATGCACCTTTGAGAACTT+TGG | - | chr2_4:4362497-4362516 | None:intergenic | 40.0% |
| TTTACAATGTTGTGTGGGTG+AGG | + | chr2_4:4362602-4362621 | Msa0309720:intron | 40.0% | |
| TACGCATACTCAGAGAAAGT+GGG | + | chr2_4:4362773-4362792 | Msa0309720:CDS | 40.0% | |
| AGAAGCCATGTCTCTAACTA+AGG | + | chr2_4:4362814-4362833 | Msa0309720:CDS | 40.0% | |
| GAAGCCATGTCTCTAACTAA+GGG | + | chr2_4:4362815-4362834 | Msa0309720:CDS | 40.0% | |
| CTTTCCCTTAGTTAGAGACA+TGG | - | chr2_4:4362822-4362841 | None:intergenic | 40.0% | |
| CTAACTAAGGGAAAGCAAGA+AGG | + | chr2_4:4362827-4362846 | Msa0309720:CDS | 40.0% | |
| CATCAGAAGATGCATCAGTT+TGG | - | chr2_4:4362892-4362911 | None:intergenic | 40.0% | |
| ACGAGTCAGAAGAGGATAAA+AGG | + | chr2_4:4362921-4362940 | Msa0309720:CDS | 40.0% | |
| CGAGTCAGAAGAGGATAAAA+GGG | + | chr2_4:4362922-4362941 | Msa0309720:CDS | 40.0% | |
| ! | TCTTTTAGCCCTTGCATACT+AGG | + | chr2_4:4363179-4363198 | Msa0309720:three_prime_UTR | 40.0% |
| TGGGATTTCCTAGTATGCAA+GGG | - | chr2_4:4363190-4363209 | None:intergenic | 40.0% | |
| CGTTGCAACTTCACTCTCTT+CGG | - | chr2_4:4359072-4359091 | None:intergenic | 45.0% | |
| GATGTGGATGGATGCAAATG+AGG | - | chr2_4:4359252-4359271 | None:intergenic | 45.0% | |
| TTCGCGATTGTAGATGTGGA+TGG | - | chr2_4:4359264-4359283 | None:intergenic | 45.0% | |
| AAGGTTCGCGATTGTAGATG+TGG | - | chr2_4:4359268-4359287 | None:intergenic | 45.0% | |
| !! | CGCGAACCTTTTCAAGATGT+CGG | + | chr2_4:4359278-4359297 | Msa0309720:CDS | 45.0% |
| GCATTGCCGACATCTTGAAA+AGG | - | chr2_4:4359287-4359306 | None:intergenic | 45.0% | |
| ! | GGCAATGCTTTTCTTCTCTC+CGG | + | chr2_4:4359299-4359318 | Msa0309720:CDS | 45.0% |
| ! | AATGCTTTTCTTCTCTCCGG+TGG | + | chr2_4:4359302-4359321 | Msa0309720:CDS | 45.0% |
| GGGATGGAGGAGATAAATAG+TGG | - | chr2_4:4359842-4359861 | None:intergenic | 45.0% | |
| !! | AGGTTTTATGGTTGGGATGG+AGG | - | chr2_4:4359855-4359874 | None:intergenic | 45.0% |
| !! | GGTAGGTTTTATGGTTGGGA+TGG | - | chr2_4:4359858-4359877 | None:intergenic | 45.0% |
| GAGAAGAAAATCTGCAGCCA+GGG | + | chr2_4:4360015-4360034 | Msa0309720:CDS | 45.0% | |
| GCTGCTGATCGTGATGATAT+AGG | + | chr2_4:4360076-4360095 | Msa0309720:CDS | 45.0% | |
| GCTGATCGTGATGATATAGG+CGG | + | chr2_4:4360079-4360098 | Msa0309720:CDS | 45.0% | |
| ATAGGCGGTTCTGTTTATGG+AGG | + | chr2_4:4360094-4360113 | Msa0309720:CDS | 45.0% | |
| AAGATGGGAGCTTGTAAGCA+AGG | + | chr2_4:4360151-4360170 | Msa0309720:CDS | 45.0% | |
| GTAAGCAAGGAGAGGTTATC+AGG | + | chr2_4:4360164-4360183 | Msa0309720:CDS | 45.0% | |
| TCACGATATCCTTGAGCTTG+GGG | - | chr2_4:4360330-4360349 | None:intergenic | 45.0% | |
| CATCACGATATCCTTGAGCT+TGG | - | chr2_4:4360332-4360351 | None:intergenic | 45.0% | |
| CTCAAGGATATCGTGATGAG+CGG | + | chr2_4:4360334-4360353 | Msa0309720:CDS | 45.0% | |
| TCAAGGATATCGTGATGAGC+GGG | + | chr2_4:4360335-4360354 | Msa0309720:CDS | 45.0% | |
| !!! | AACCCTGATGGGTTTTTACC+CGG | + | chr2_4:4360373-4360392 | Msa0309720:CDS | 45.0% |
| TACCGGGTAAAAACCCATCA+GGG | - | chr2_4:4360378-4360397 | None:intergenic | 45.0% | |
| ! | TGGGTTTTTACCCGGTAGAA+TGG | + | chr2_4:4360381-4360400 | Msa0309720:CDS | 45.0% |
| TTTAATGGGGCCATTCTACC+GGG | - | chr2_4:4360394-4360413 | None:intergenic | 45.0% | |
| CTTTAATGGGGCCATTCTAC+CGG | - | chr2_4:4360395-4360414 | None:intergenic | 45.0% | |
| ! | TTTGGCTCCTTCAGTATGTG+AGG | + | chr2_4:4360461-4360480 | Msa0309720:CDS | 45.0% |
| CCCAAAACCTCACATACTGA+AGG | - | chr2_4:4360471-4360490 | None:intergenic | 45.0% | |
| ! | ACAACATGGGTTGTCACTGT+TGG | + | chr2_4:4360613-4360632 | Msa0309720:CDS | 45.0% |
| ! | CAACATGGGTTGTCACTGTT+GGG | + | chr2_4:4360614-4360633 | Msa0309720:CDS | 45.0% |
| ! | AACATGGGTTGTCACTGTTG+GGG | + | chr2_4:4360615-4360634 | Msa0309720:CDS | 45.0% |
| ! | CTCTCTGTTTCCATGGGTTA+TGG | + | chr2_4:4360670-4360689 | Msa0309720:CDS | 45.0% |
| TCTTGGCGGTCTTACATCAA+AGG | + | chr2_4:4360708-4360727 | Msa0309720:CDS | 45.0% | |
| ATGATGTATCTGGAAGGGCA+AGG | + | chr2_4:4360803-4360822 | Msa0309720:CDS | 45.0% | |
| !! | AATGCGTCCAAGAAAGCATC+AGG | - | chr2_4:4360844-4360863 | None:intergenic | 45.0% |
| CTGTCTGTATCTTCCTTGTC+AGG | + | chr2_4:4361049-4361068 | Msa0309720:intron | 45.0% | |
| ACCTCTTCAGTTGTCTGGAT+AGG | + | chr2_4:4361137-4361156 | Msa0309720:CDS | 45.0% | |
| ACCTATCCAGACAACTGAAG+AGG | - | chr2_4:4361141-4361160 | None:intergenic | 45.0% | |
| CACCTTTGCATTTAGGTACC+GGG | + | chr2_4:4361385-4361404 | Msa0309720:intron | 45.0% | |
| AAGCTTAAGAGCCCTTAGCT+GGG | - | chr2_4:4361556-4361575 | None:intergenic | 45.0% | |
| TTTCCAAACATGAGGGAGCT+AGG | - | chr2_4:4361600-4361619 | None:intergenic | 45.0% | |
| TGGCCAGTTTCCAAACATGA+GGG | - | chr2_4:4361607-4361626 | None:intergenic | 45.0% | |
| TAGGTAGAAGGTCAGCTACA+TGG | - | chr2_4:4361896-4361915 | None:intergenic | 45.0% | |
| ! | CATTTGGCTGATAGGTTGAG+TGG | - | chr2_4:4362043-4362062 | None:intergenic | 45.0% |
| AGCAGGGATATAAACACCTC+TGG | - | chr2_4:4362201-4362220 | None:intergenic | 45.0% | |
| CAGATCCATTTAATGAGCGC+TGG | + | chr2_4:4362388-4362407 | Msa0309720:CDS | 45.0% | |
| CTTGGATCATCACTGCATTC+TGG | + | chr2_4:4362418-4362437 | Msa0309720:CDS | 45.0% | |
| ! | CACCTTTGAGAACTTTGGGA+AGG | - | chr2_4:4362492-4362511 | None:intergenic | 45.0% |
| GTACGCATACTCAGAGAAAG+TGG | + | chr2_4:4362772-4362791 | Msa0309720:CDS | 45.0% | |
| AAGGGAAAGCAAGAAGGACA+AGG | + | chr2_4:4362833-4362852 | Msa0309720:CDS | 45.0% | |
| TGAAGATGACGAGTCAGAAG+AGG | + | chr2_4:4362913-4362932 | Msa0309720:CDS | 45.0% | |
| ! | TCTGTACTGTTTTCCCTGCT+GGG | + | chr2_4:4362976-4362995 | Msa0309720:three_prime_UTR | 45.0% |
| TGAGACTTGAAAACCCAGCA+GGG | - | chr2_4:4362992-4363011 | None:intergenic | 45.0% | |
| TTGAGACTTGAAAACCCAGC+AGG | - | chr2_4:4362993-4363012 | None:intergenic | 45.0% | |
| GTGGGATTTCCTAGTATGCA+AGG | - | chr2_4:4363191-4363210 | None:intergenic | 45.0% | |
| !! | ATATAAATGAAAATAAATAT+AGG | - | chr2_4:4359226-4359245 | None:intergenic | 5.0% |
| !! | AAAAAATAATAAATACTAAT+AGG | - | chr2_4:4361729-4361748 | None:intergenic | 5.0% |
| AACTACACCACATACACGCG+CGG | - | chr2_4:4359027-4359046 | None:intergenic | 50.0% | |
| CTCTCTTCGGCAGATGAGAT+TGG | - | chr2_4:4359059-4359078 | None:intergenic | 50.0% | |
| GATGGAATCGGTATGGGAAG+CGG | - | chr2_4:4359357-4359376 | None:intergenic | 50.0% | |
| GTCGTGGATGGAATCGGTAT+GGG | - | chr2_4:4359363-4359382 | None:intergenic | 50.0% | |
| !! | CATACCGATTCCATCCACGA+CGG | + | chr2_4:4359362-4359381 | Msa0309720:CDS | 50.0% |
| ACGACGGCCGTTCTTACATT+CGG | + | chr2_4:4359378-4359397 | Msa0309720:CDS | 50.0% | |
| GCTAGACTGAAATGAAGGGG+AGG | + | chr2_4:4359580-4359599 | Msa0309720:intron | 50.0% | |
| AGACTGAAATGAAGGGGAGG+AGG | + | chr2_4:4359583-4359602 | Msa0309720:intron | 50.0% | |
| TGGAGTGATAAGGAGGGAGA+CGG | - | chr2_4:4359822-4359841 | None:intergenic | 50.0% | |
| GGAGAAGAAAATCTGCAGCC+AGG | + | chr2_4:4360014-4360033 | Msa0309720:CDS | 50.0% | |
| TGATGAGCGGGAAGACAATC+TGG | + | chr2_4:4360347-4360366 | Msa0309720:CDS | 50.0% | |
| CTACCGGGTAAAAACCCATC+AGG | - | chr2_4:4360379-4360398 | None:intergenic | 50.0% | |
| GAAGGAGCCAAACAATGCCA+AGG | - | chr2_4:4360453-4360472 | None:intergenic | 50.0% | |
| TCGCACAACACCATAACCCA+TGG | - | chr2_4:4360683-4360702 | None:intergenic | 50.0% | |
| GATGTAAGACCGCCAAGAGT+GGG | - | chr2_4:4360706-4360725 | None:intergenic | 50.0% | |
| TGATGTAAGACCGCCAAGAG+TGG | - | chr2_4:4360707-4360726 | None:intergenic | 50.0% | |
| ! | GAACTCCGTTTTGCCTGACA+AGG | - | chr2_4:4361065-4361084 | None:intergenic | 50.0% |
| CGGTTACCTCTTCAGTTGTC+TGG | + | chr2_4:4361132-4361151 | Msa0309720:CDS | 50.0% | |
| GGTGTATGTGTCCCAGCTAA+GGG | + | chr2_4:4361542-4361561 | Msa0309720:intron | 50.0% | |
| GAAGCTTAAGAGCCCTTAGC+TGG | - | chr2_4:4361557-4361576 | None:intergenic | 50.0% | |
| GCTCCCTCATGTTTGGAAAC+TGG | + | chr2_4:4361601-4361620 | Msa0309720:intron | 50.0% | |
| GTGGCCAGTTTCCAAACATG+AGG | - | chr2_4:4361608-4361627 | None:intergenic | 50.0% | |
| CTCTGCCAGCGCTCATTAAA+TGG | - | chr2_4:4362396-4362415 | None:intergenic | 50.0% | |
| CGCCTTCCCAAAGTTCTCAA+AGG | + | chr2_4:4362487-4362506 | Msa0309720:CDS | 50.0% | |
| TTTGCCTCTGCGAACTACGT+AGG | + | chr2_4:4362750-4362769 | Msa0309720:intron | 50.0% | |
| CAGGGAAAACAGTACAGACG+TGG | - | chr2_4:4362974-4362993 | None:intergenic | 50.0% | |
| ! | GTCTGTACTGTTTTCCCTGC+TGG | + | chr2_4:4362975-4362994 | Msa0309720:three_prime_UTR | 50.0% |
| AACACCTCCTATTGAGGGTC+GGG | - | chr2_4:4363025-4363044 | None:intergenic | 50.0% | |
| CAACACCTCCTATTGAGGGT+CGG | - | chr2_4:4363026-4363045 | None:intergenic | 50.0% | |
| CGTCGTGGATGGAATCGGTA+TGG | - | chr2_4:4359364-4359383 | None:intergenic | 55.0% | |
| GAATGTAAGAACGGCCGTCG+TGG | - | chr2_4:4359379-4359398 | None:intergenic | 55.0% | |
| GGGAGCTTGTAAGCAAGGAG+AGG | + | chr2_4:4360156-4360175 | Msa0309720:CDS | 55.0% | |
| AGCTTGTGACCCCAAGCTCA+AGG | + | chr2_4:4360318-4360337 | Msa0309720:CDS | 55.0% | |
| !! | GCGCTGGCTTATGTTTGCCT+TGG | + | chr2_4:4360433-4360452 | Msa0309720:CDS | 55.0% |
| GGCCCGGTACCTAAATGCAA+AGG | - | chr2_4:4361390-4361409 | None:intergenic | 55.0% | |
| GGGTGTATGTGTCCCAGCTA+AGG | + | chr2_4:4361541-4361560 | Msa0309720:intron | 55.0% | |
| CGTCCTAGCTCCCTCATGTT+TGG | + | chr2_4:4361594-4361613 | Msa0309720:intron | 55.0% | |
| CGTACCTACGTAGTTCGCAG+AGG | - | chr2_4:4362757-4362776 | None:intergenic | 55.0% | |
| ACACCTCCTATTGAGGGTCG+GGG | - | chr2_4:4363024-4363043 | None:intergenic | 55.0% | |
| GCTAGATCCGCGCGTGTATG+TGG | + | chr2_4:4359017-4359036 | Msa0309720:five_prime_UTR | 60.0% | |
| CTTCTCTCCGGTGGCAGTGA+AGG | + | chr2_4:4359311-4359330 | Msa0309720:CDS | 60.0% | |
| ATGGGAAGCGGTGGAGATGG+AGG | - | chr2_4:4359345-4359364 | None:intergenic | 60.0% | |
| GGTATGGGAAGCGGTGGAGA+TGG | - | chr2_4:4359348-4359367 | None:intergenic | 60.0% | |
| GGAATCGGTATGGGAAGCGG+TGG | - | chr2_4:4359354-4359373 | None:intergenic | 60.0% | |
| ACGGCCGTCGTGGATGGAAT+CGG | - | chr2_4:4359369-4359388 | None:intergenic | 60.0% | |
| GTAAGAACGGCCGTCGTGGA+TGG | - | chr2_4:4359375-4359394 | None:intergenic | 60.0% | |
| ! | GGTGTTGTGCGACCCACTCT+TGG | + | chr2_4:4360691-4360710 | Msa0309720:CDS | 60.0% |
| GTTGTGCGACCCACTCTTGG+CGG | + | chr2_4:4360694-4360713 | Msa0309720:CDS | 60.0% | |
| !! | ATGAGCGCTGGCAGAGTGCT+TGG | + | chr2_4:4362400-4362419 | Msa0309720:CDS | 60.0% |
| CGTCTTCCCCGACCCTCAAT+AGG | + | chr2_4:4363015-4363034 | Msa0309720:three_prime_UTR | 60.0% | |
| CTTCCCCGACCCTCAATAGG+AGG | + | chr2_4:4363018-4363037 | Msa0309720:three_prime_UTR | 60.0% | |
| GGCGATGCCTTCACTGCCAC+CGG | - | chr2_4:4359321-4359340 | None:intergenic | 65.0% | |
| GGAAGCGGTGGAGATGGAGG+CGG | - | chr2_4:4359342-4359361 | None:intergenic | 65.0% | |
| AAATCTGCAGCCAGGGCGCG+TGG | + | chr2_4:4360022-4360041 | Msa0309720:CDS | 65.0% | |
| TGGCACGGTACCACGCGCCC+TGG | - | chr2_4:4360035-4360054 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 4358996 | 4363259 | 4358996 | ID=Msa0309720;Name=Msa0309720 |
| chr2_4 | mRNA | 4358996 | 4363259 | 4358996 | ID=Msa0309720-mRNA-1;Parent=Msa0309720;Name=Msa0309720-mRNA-1;_AED=0.01;_eAED=0.01;_QI=192|1|1|1|1|1|5|310|514 |
| chr2_4 | exon | 4358996 | 4359399 | 4358996 | ID=Msa0309720-mRNA-1:exon:1463;Parent=Msa0309720-mRNA-1 |
| chr2_4 | exon | 4359994 | 4360915 | 4359994 | ID=Msa0309720-mRNA-1:exon:1464;Parent=Msa0309720-mRNA-1 |
| chr2_4 | exon | 4361071 | 4361166 | 4361071 | ID=Msa0309720-mRNA-1:exon:1465;Parent=Msa0309720-mRNA-1 |
| chr2_4 | exon | 4362372 | 4362508 | 4362372 | ID=Msa0309720-mRNA-1:exon:1466;Parent=Msa0309720-mRNA-1 |
| chr2_4 | exon | 4362772 | 4363259 | 4362772 | ID=Msa0309720-mRNA-1:exon:1467;Parent=Msa0309720-mRNA-1 |
| chr2_4 | five_prime_UTR | 4358996 | 4359187 | 4358996 | ID=Msa0309720-mRNA-1:five_prime_utr;Parent=Msa0309720-mRNA-1 |
| chr2_4 | CDS | 4359188 | 4359399 | 4359188 | ID=Msa0309720-mRNA-1:cds;Parent=Msa0309720-mRNA-1 |
| chr2_4 | CDS | 4359994 | 4360915 | 4359994 | ID=Msa0309720-mRNA-1:cds;Parent=Msa0309720-mRNA-1 |
| chr2_4 | CDS | 4361071 | 4361166 | 4361071 | ID=Msa0309720-mRNA-1:cds;Parent=Msa0309720-mRNA-1 |
| chr2_4 | CDS | 4362372 | 4362508 | 4362372 | ID=Msa0309720-mRNA-1:cds;Parent=Msa0309720-mRNA-1 |
| chr2_4 | CDS | 4362772 | 4362949 | 4362772 | ID=Msa0309720-mRNA-1:cds;Parent=Msa0309720-mRNA-1 |
| chr2_4 | three_prime_UTR | 4362950 | 4363259 | 4362950 | ID=Msa0309720-mRNA-1:three_prime_utr;Parent=Msa0309720-mRNA-1 |
| Gene Sequence |
| Protein sequence |