Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555370 | XP_003607601.1 | 96.180 | 445 | 14 | 1 | 1 | 445 | 1 | 442 | 0.0 | 883 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555370 | sp|Q9SJI7|PLA20_ARATH | 61.353 | 414 | 147 | 4 | 34 | 443 | 7 | 411 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555370 | G7JCM9 | 96.180 | 445 | 14 | 1 | 1 | 445 | 1 | 442 | 0.0 | 883 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043940 | Msa0555370 | 0.803444 | 3.476324e-49 | -8.615850e-47 |
| Msa0323990 | Msa0555370 | 0.809597 | 1.749495e-50 | -8.615850e-47 |
| Msa0555370 | Msa0649380 | 0.889305 | 2.728060e-73 | -8.615850e-47 |
| Msa0555370 | Msa0649420 | 0.888255 | 6.944960e-73 | -8.615850e-47 |
| Msa0555370 | Msa0802210 | 0.801619 | 8.265426e-49 | -8.615850e-47 |
| Msa0555370 | Msa1165290 | 0.808704 | 2.717923e-50 | -8.615850e-47 |
| Msa0555370 | Msa1408710 | 0.839375 | 1.645207e-57 | -8.615850e-47 |
| Msa0555370 | Msa1439120 | 0.806776 | 6.979722e-50 | -8.615850e-47 |
| Msa0555370 | Msa1455660 | 0.803759 | 2.991042e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555370 | MtrunA17_Chr4g0041311 | 96.180 | 445 | 14 | 1 | 1 | 445 | 1 | 442 | 0.0 | 883 |
| Msa0555370 | MtrunA17_Chr2g0283561 | 47.044 | 406 | 180 | 5 | 35 | 430 | 43 | 423 | 2.56e-125 | 370 |
| Msa0555370 | MtrunA17_Chr4g0046001 | 39.716 | 423 | 209 | 8 | 21 | 430 | 3 | 392 | 3.34e-96 | 295 |
| Msa0555370 | MtrunA17_Chr4g0046011 | 39.706 | 408 | 204 | 6 | 34 | 430 | 7 | 383 | 9.96e-96 | 293 |
| Msa0555370 | MtrunA17_Chr4g0039301 | 36.574 | 432 | 213 | 10 | 33 | 436 | 102 | 500 | 1.45e-86 | 274 |
| Msa0555370 | MtrunA17_Chr7g0260671 | 35.047 | 428 | 225 | 6 | 32 | 433 | 75 | 475 | 7.75e-83 | 263 |
| Msa0555370 | MtrunA17_Chr7g0260681 | 33.075 | 387 | 204 | 7 | 21 | 378 | 60 | 420 | 5.63e-63 | 209 |
| Msa0555370 | MtrunA17_Chr7g0214711 | 35.598 | 368 | 166 | 13 | 35 | 376 | 109 | 431 | 3.81e-50 | 177 |
| Msa0555370 | MtrunA17_Chr7g0250561 | 32.143 | 420 | 217 | 12 | 19 | 396 | 57 | 450 | 1.04e-49 | 175 |
| Msa0555370 | MtrunA17_Chr5g0399641 | 29.730 | 407 | 220 | 10 | 20 | 395 | 124 | 495 | 8.61e-49 | 174 |
| Msa0555370 | MtrunA17_Chr7g0250611 | 32.474 | 388 | 203 | 13 | 28 | 394 | 72 | 421 | 9.67e-45 | 161 |
| Msa0555370 | MtrunA17_Chr4g0055691 | 31.105 | 389 | 199 | 9 | 35 | 395 | 133 | 480 | 1.19e-41 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555370 | AT2G42690.1 | 61.353 | 414 | 147 | 4 | 34 | 443 | 7 | 411 | 0.0 | 531 |
| Msa0555370 | AT4G18550.1 | 42.543 | 409 | 195 | 8 | 35 | 430 | 23 | 404 | 6.97e-106 | 320 |
| Msa0555370 | AT4G18550.2 | 42.543 | 409 | 195 | 8 | 35 | 430 | 40 | 421 | 8.00e-106 | 321 |
| Msa0555370 | AT1G06250.1 | 39.803 | 407 | 209 | 6 | 35 | 430 | 9 | 390 | 1.84e-94 | 291 |
| Msa0555370 | AT1G51440.1 | 37.788 | 434 | 206 | 11 | 32 | 431 | 88 | 491 | 3.28e-84 | 268 |
| Msa0555370 | AT2G30550.2 | 35.402 | 435 | 215 | 11 | 32 | 433 | 102 | 503 | 2.56e-81 | 261 |
| Msa0555370 | AT1G06800.1 | 36.406 | 434 | 217 | 12 | 28 | 431 | 82 | 486 | 6.01e-79 | 254 |
| Msa0555370 | AT1G30370.1 | 32.812 | 448 | 240 | 12 | 22 | 442 | 105 | 518 | 2.57e-73 | 239 |
| Msa0555370 | AT4G18550.3 | 40.468 | 299 | 142 | 6 | 35 | 322 | 40 | 313 | 2.08e-69 | 223 |
| Msa0555370 | AT1G06250.2 | 40.199 | 301 | 146 | 5 | 139 | 430 | 1 | 276 | 3.17e-65 | 212 |
| Msa0555370 | AT2G30550.1 | 34.383 | 381 | 184 | 11 | 32 | 379 | 102 | 449 | 3.49e-64 | 214 |
| Msa0555370 | AT1G06800.2 | 35.248 | 383 | 189 | 12 | 26 | 378 | 80 | 433 | 2.65e-62 | 208 |
| Msa0555370 | AT2G31690.1 | 32.609 | 368 | 187 | 9 | 33 | 376 | 90 | 420 | 7.00e-51 | 179 |
| Msa0555370 | AT1G05800.1 | 32.115 | 383 | 193 | 10 | 21 | 376 | 67 | 409 | 1.28e-47 | 170 |
| Msa0555370 | AT4G16820.1 | 31.186 | 388 | 199 | 11 | 35 | 394 | 131 | 478 | 2.00e-43 | 160 |
| Msa0555370 | AT2G44810.2 | 30.402 | 398 | 212 | 11 | 27 | 394 | 83 | 445 | 2.98e-41 | 152 |
| Msa0555370 | AT2G44810.1 | 30.649 | 385 | 203 | 10 | 40 | 394 | 5 | 355 | 3.96e-40 | 147 |
Find 140 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCTCATCTCATTTCTTT+TGG | 0.177812 | 4_1:-53383130 | Msa0555370:five_prime_UTR |
| AGCGGGTGAGTGTGTTATTT+GGG | 0.254574 | 4_1:+53383031 | None:intergenic |
| CATTATCCAGGGAAGTTATT+GGG | 0.257904 | 4_1:-53381002 | Msa0555370:CDS |
| AGAGTTGGTTCCATGTTTCT+TGG | 0.259076 | 4_1:+53382899 | None:intergenic |
| CCCGTTGCTGCATTTGTGTT+TGG | 0.261484 | 4_1:-53381122 | Msa0555370:CDS |
| GTACCCTTATTATTCTTGTC+TGG | 0.276776 | 4_1:+53382403 | None:intergenic |
| CCTCCCAGACAAGAATAATA+AGG | 0.286496 | 4_1:-53382407 | Msa0555370:CDS |
| GCCAACCCTTCATTACTTTA+GGG | 0.286539 | 4_1:+53381345 | None:intergenic |
| ACATTATCCAGGGAAGTTAT+TGG | 0.290351 | 4_1:-53381003 | Msa0555370:CDS |
| AGCCAACCCTTCATTACTTT+AGG | 0.296635 | 4_1:+53381344 | None:intergenic |
| TAACATGGATTATTCCTTAT+AGG | 0.303692 | 4_1:+53380646 | None:intergenic |
| GAGCGGGTGAGTGTGTTATT+TGG | 0.304206 | 4_1:+53383030 | None:intergenic |
| CCGTTGCTGCATTTGTGTTT+GGG | 0.335466 | 4_1:-53381121 | Msa0555370:CDS |
| CTGGTTGGAATGGGAGTGAT+GGG | 0.360921 | 4_1:-53380866 | Msa0555370:CDS |
| GGAACAAAGCTTTCAATGAT+AGG | 0.361448 | 4_1:-53381085 | Msa0555370:CDS |
| GGTGAAGGTGAAGAGGAGTT+TGG | 0.362136 | 4_1:-53380835 | Msa0555370:CDS |
| GAAACATGGAACCAACTCTT+AGG | 0.363153 | 4_1:-53382895 | Msa0555370:CDS |
| TGGTGGGTTGCGACGAATAA+AGG | 0.365880 | 4_1:-53380756 | Msa0555370:CDS |
| GTTGGGACCGTGAGTCTAAC+TGG | 0.369388 | 4_1:-53382600 | Msa0555370:CDS |
| ACAGGCAGGTCCTCCTTCTC+TGG | 0.374799 | 4_1:+53380696 | None:intergenic |
| TGACTCTGTATATGCCTATA+AGG | 0.379605 | 4_1:-53380660 | Msa0555370:three_prime_UTR |
| GCGAGGTTATGCACCTTTAG+TGG | 0.380943 | 4_1:+53380393 | None:intergenic |
| TATTAAATTATTCAGAGAAA+AGG | 0.382492 | 4_1:+53380541 | None:intergenic |
| AACCGCAGTAGATAGAGTTT+TGG | 0.382882 | 4_1:+53382764 | None:intergenic |
| AACTCTTAGGAAACAACAAC+TGG | 0.382925 | 4_1:-53382882 | Msa0555370:CDS |
| TACCCTTATTATTCTTGTCT+GGG | 0.392329 | 4_1:+53382404 | None:intergenic |
| GCTGGTTGGAATGGGAGTGA+TGG | 0.408221 | 4_1:-53380867 | Msa0555370:CDS |
| TGGGAGTGATGGGGAGTTTG+AGG | 0.408734 | 4_1:-53380856 | Msa0555370:CDS |
| GCGTAGGGAGGATGGGGAAT+GGG | 0.409917 | 4_1:-53380727 | Msa0555370:CDS |
| CATGACTTTGTTAAAGAATG+AGG | 0.410558 | 4_1:+53382723 | None:intergenic |
| ATACAGAGTCAATACTCTTC+AGG | 0.411989 | 4_1:+53380672 | None:intergenic |
| GTATGGTGCGTAGGGAGGAT+GGG | 0.417927 | 4_1:-53380734 | Msa0555370:CDS |
| GGTATGGTGCGTAGGGAGGA+TGG | 0.422785 | 4_1:-53380735 | Msa0555370:CDS |
| TGTTTGGGTCCCCACAAGTT+GGG | 0.424136 | 4_1:-53381106 | Msa0555370:CDS |
| TTATTGGGGTATGAGTATAC+TGG | 0.426672 | 4_1:-53380987 | Msa0555370:CDS |
| CATATTGTGGCTGGTTGGAA+TGG | 0.429515 | 4_1:-53380876 | Msa0555370:CDS |
| TAAGTCTTGTGATTACTTGA+AGG | 0.431881 | 4_1:-53380802 | Msa0555370:CDS |
| AATCCAAGTGTGGTATTAGT+AGG | 0.433511 | 4_1:-53381215 | Msa0555370:CDS |
| TACTGCGGTTCAAGCCGTTA+TGG | 0.436707 | 4_1:-53382751 | Msa0555370:CDS |
| ACAAGCTCACACCAAAGGTT+TGG | 0.439871 | 4_1:+53380432 | None:intergenic |
| ATTCAAAGAATCCAAGTGAT+TGG | 0.440840 | 4_1:-53380920 | Msa0555370:CDS |
| CCAAACACAAATGCAGCAAC+GGG | 0.442597 | 4_1:+53381122 | None:intergenic |
| ATTAAATTATTCAGAGAAAA+GGG | 0.443253 | 4_1:+53380542 | None:intergenic |
| GATCTTATACCACATTATCC+AGG | 0.444039 | 4_1:-53381014 | Msa0555370:CDS |
| GAGTGAAGAATAAAAGCTTC+AGG | 0.445100 | 4_1:+53382637 | None:intergenic |
| CTCACTATCACGTGAGAGTT+GGG | 0.447265 | 4_1:-53382617 | Msa0555370:CDS |
| AACAAACTAGAAGCAGATTC+AGG | 0.459461 | 4_1:+53382457 | None:intergenic |
| TGCAAATTATGCCAATCACT+TGG | 0.462899 | 4_1:+53380909 | None:intergenic |
| GAGAATCCCTAAAGTAATGA+AGG | 0.463756 | 4_1:-53381351 | Msa0555370:CDS |
| GTATTTCATAAGCTATTGTC+TGG | 0.464646 | 4_1:-53380488 | Msa0555370:three_prime_UTR |
| AGTTGTTGTTTCCTAAGAGT+TGG | 0.465002 | 4_1:+53382884 | None:intergenic |
| CTCCCAGACAAGAATAATAA+GGG | 0.473299 | 4_1:-53382406 | Msa0555370:intron |
| GTGAGGAGTTGATGAGGGAA+GGG | 0.473696 | 4_1:+53383069 | None:intergenic |
| CGAATAAAGGTATGGTGCGT+AGG | 0.476201 | 4_1:-53380743 | Msa0555370:CDS |
| TGAGTGTGTTATTTGGGGAG+TGG | 0.483253 | 4_1:+53383037 | None:intergenic |
| TCCCTAAAGTAATGAAGGGT+TGG | 0.484045 | 4_1:-53381346 | Msa0555370:CDS |
| AAGCTTTGTTCCCAACTTGT+GGG | 0.484528 | 4_1:+53381096 | None:intergenic |
| TGCGTAGGGAGGATGGGGAA+TGG | 0.488524 | 4_1:-53380728 | Msa0555370:CDS |
| AAAGCTTTGTTCCCAACTTG+TGG | 0.491555 | 4_1:+53381095 | None:intergenic |
| CCCAAACACAAATGCAGCAA+CGG | 0.494417 | 4_1:+53381121 | None:intergenic |
| AGTGTCACGTGCCGGCGTCA+TGG | 0.494975 | 4_1:-53380776 | Msa0555370:CDS |
| TTGTGTGGCGTGGTACTACT+AGG | 0.495241 | 4_1:-53382513 | Msa0555370:CDS |
| AGTTTGAGGTGAAGGTGAAG+AGG | 0.496715 | 4_1:-53380842 | Msa0555370:CDS |
| CTCACTCACTCACTTTAACA+TGG | 0.501665 | 4_1:-53383010 | Msa0555370:exon |
| CTGGAGTGGATTAACGTGTT+TGG | 0.501745 | 4_1:-53382487 | Msa0555370:CDS |
| GGATGAGGTTGCGGAGATTG+AGG | 0.506364 | 4_1:+53382836 | None:intergenic |
| TGTGTCTGTTGCCATGTCCA+AGG | 0.507555 | 4_1:+53382966 | None:intergenic |
| TGATGGGGAGTTTGAGGTGA+AGG | 0.510458 | 4_1:-53380850 | Msa0555370:CDS |
| TATGGTGCGTAGGGAGGATG+GGG | 0.510574 | 4_1:-53380733 | Msa0555370:CDS |
| CGATGAACGGAGTAGAGAGT+TGG | 0.517745 | 4_1:-53382554 | Msa0555370:CDS |
| ATATTGTGGCTGGTTGGAAT+GGG | 0.519997 | 4_1:-53380875 | Msa0555370:CDS |
| ACTCACTATCACGTGAGAGT+TGG | 0.522634 | 4_1:-53382618 | Msa0555370:CDS |
| GCAAGCTATGTTGCATATTG+TGG | 0.523056 | 4_1:-53380889 | Msa0555370:CDS |
| TGTGAGGAGTTGATGAGGGA+AGG | 0.524098 | 4_1:+53383068 | None:intergenic |
| CAACTCTCTACTCCGTTCAT+CGG | 0.527868 | 4_1:+53382555 | None:intergenic |
| CACAACGGAGGATGAGGTTG+CGG | 0.530460 | 4_1:+53382827 | None:intergenic |
| GACCGTGAGTCTAACTGGAT+TGG | 0.532608 | 4_1:-53382595 | Msa0555370:CDS |
| GCTATGTTGCATATTGTGGC+TGG | 0.532700 | 4_1:-53380885 | Msa0555370:CDS |
| TCATACCCCAATAACTTCCC+TGG | 0.532892 | 4_1:+53380996 | None:intergenic |
| TTGCGGAGATTGAGGTCTAG+TGG | 0.537408 | 4_1:+53382844 | None:intergenic |
| GTCACGTGCCGGCGTCATGG+TGG | 0.539164 | 4_1:-53380773 | Msa0555370:CDS |
| TGTTGCATATTGTGGCTGGT+TGG | 0.546285 | 4_1:-53380881 | Msa0555370:CDS |
| ACACAACAGTGTAGTGTGTA+GGG | 0.546335 | 4_1:+53382692 | None:intergenic |
| TGCGGAGATTGAGGTCTAGT+GGG | 0.547441 | 4_1:+53382845 | None:intergenic |
| CCTTATTATTCTTGTCTGGG+AGG | 0.547834 | 4_1:+53382407 | None:intergenic |
| GATGAACGGAGTAGAGAGTT+GGG | 0.549457 | 4_1:-53382553 | Msa0555370:CDS |
| GAATAAAGGTATGGTGCGTA+GGG | 0.553192 | 4_1:-53380742 | Msa0555370:CDS |
| TAAAGGTGCATAACCTCGCA+AGG | 0.556035 | 4_1:-53380389 | None:intergenic |
| ATGGGTTGATGCACCAGAGA+AGG | 0.557126 | 4_1:-53380709 | Msa0555370:CDS |
| TCACGTGCCGGCGTCATGGT+GGG | 0.557826 | 4_1:-53380772 | Msa0555370:CDS |
| GTGTTTGGGTCCCCACAAGT+TGG | 0.557854 | 4_1:-53381107 | Msa0555370:CDS |
| CGCAACCTCATCCTCCGTTG+TGG | 0.560178 | 4_1:-53382826 | Msa0555370:CDS |
| CAAACTACTGAAACCACTAA+AGG | 0.563219 | 4_1:-53380406 | Msa0555370:three_prime_UTR |
| AATACTCTTCAGGCACAGGC+AGG | 0.565284 | 4_1:+53380682 | None:intergenic |
| ATCTTATACCACATTATCCA+GGG | 0.566732 | 4_1:-53381013 | Msa0555370:CDS |
| ATTATCCAGGGAAGTTATTG+GGG | 0.567947 | 4_1:-53381001 | Msa0555370:CDS |
| GTCGTTGTTAAAGGAGTCGT+AGG | 0.568720 | 4_1:+53382786 | None:intergenic |
| GTGTCTGTTGCCATGTCCAA+GGG | 0.573129 | 4_1:+53382967 | None:intergenic |
| TGTCCTACTAATACCACACT+TGG | 0.573233 | 4_1:+53381212 | None:intergenic |
| AGTCACCACAACGGAGGATG+AGG | 0.574935 | 4_1:+53382821 | None:intergenic |
| AATAACTTCCCTGGATAATG+TGG | 0.577975 | 4_1:+53381005 | None:intergenic |
| TATTGGGGTATGAGTATACT+GGG | 0.578108 | 4_1:-53380986 | Msa0555370:CDS |
| TATATTGTGAGGAGTTGATG+AGG | 0.578903 | 4_1:+53383063 | None:intergenic |
| TGAGTATACTGGGACAGAGT+TGG | 0.580146 | 4_1:-53380976 | Msa0555370:CDS |
| GGGAGTGGATATATATTGTG+AGG | 0.581036 | 4_1:+53383052 | None:intergenic |
| TCGCTGTTAGTTCCGATGAA+CGG | 0.581063 | 4_1:-53382567 | Msa0555370:CDS |
| AGCTTTGTTCCCAACTTGTG+GGG | 0.583051 | 4_1:+53381097 | None:intergenic |
| TGGTTGGAATGGGAGTGATG+GGG | 0.584414 | 4_1:-53380865 | Msa0555370:CDS |
| TCACTCACTCACTTTAACAT+GGG | 0.585219 | 4_1:-53383009 | Msa0555370:exon |
| GAAGGAAGAGTGTCACGTGC+CGG | 0.589437 | 4_1:-53380784 | Msa0555370:CDS |
| GACACAACAGTGTAGTGTGT+AGG | 0.592811 | 4_1:+53382691 | None:intergenic |
| TGTTATACAGCATGGTAACA+TGG | 0.596633 | 4_1:+53380631 | None:intergenic |
| GTCGCAACCCACCATGACGC+CGG | 0.606178 | 4_1:+53380765 | None:intergenic |
| TGTTTACAAGCTCACACCAA+AGG | 0.608748 | 4_1:+53380427 | None:intergenic |
| TAAAGGTATGGTGCGTAGGG+AGG | 0.609458 | 4_1:-53380739 | Msa0555370:CDS |
| AGTCAATACTCTTCAGGCAC+AGG | 0.610040 | 4_1:+53380678 | None:intergenic |
| GATGAGGGAAGGGAAGTTTG+TGG | 0.610090 | 4_1:+53383079 | None:intergenic |
| GGTTGATGCACCAGAGAAGG+AGG | 0.611115 | 4_1:-53380706 | Msa0555370:CDS |
| GGTTGCGACGAATAAAGGTA+TGG | 0.611496 | 4_1:-53380751 | Msa0555370:CDS |
| AGAATCCCTAAAGTAATGAA+GGG | 0.615326 | 4_1:-53381350 | Msa0555370:CDS |
| GCGTGGTACTACTAGGGACC+TGG | 0.616633 | 4_1:-53382506 | Msa0555370:CDS |
| ATATTGTGAGGAGTTGATGA+GGG | 0.617780 | 4_1:+53383064 | None:intergenic |
| GCGGGTGAGTGTGTTATTTG+GGG | 0.618376 | 4_1:+53383032 | None:intergenic |
| CAGTACAATGTTATACAGCA+TGG | 0.630286 | 4_1:+53380623 | None:intergenic |
| CAAACACGTTAATCCACTCC+AGG | 0.633191 | 4_1:+53382488 | None:intergenic |
| CAAGAATGAAAATCCAAGTG+TGG | 0.634400 | 4_1:-53381225 | Msa0555370:CDS |
| GTATTAGTAGGACATAGTCT+AGG | 0.639227 | 4_1:-53381203 | Msa0555370:CDS |
| TAGCAGCAGCAGTGACGATG+AGG | 0.641877 | 4_1:-53381381 | Msa0555370:CDS |
| TAGAGTAACAAACAAAACAA+AGG | 0.649926 | 4_1:+53380599 | None:intergenic |
| GTCGTGAAATATATGTTGTG+TGG | 0.660451 | 4_1:-53382528 | Msa0555370:CDS |
| AACCAATCCAGTTAGACTCA+CGG | 0.662669 | 4_1:+53382593 | None:intergenic |
| GAAATATATGTTGTGTGGCG+TGG | 0.672854 | 4_1:-53382523 | Msa0555370:CDS |
| GTACTACTAGGGACCTGGAG+TGG | 0.677827 | 4_1:-53382501 | Msa0555370:CDS |
| TGTGTGGCGTGGTACTACTA+GGG | 0.683087 | 4_1:-53382512 | Msa0555370:CDS |
| GTTAAAGTGAGTGAGTGAGC+GGG | 0.699630 | 4_1:+53383014 | None:intergenic |
| TTTGTATGAAGTCACCACAA+CGG | 0.704168 | 4_1:+53382812 | None:intergenic |
| ACTCTTAGGAAACAACAACT+GGG | 0.710330 | 4_1:-53382881 | Msa0555370:CDS |
| GACCAAAACTCTATCTACTG+CGG | 0.719453 | 4_1:-53382766 | Msa0555370:CDS |
| TGTTAAAGTGAGTGAGTGAG+CGG | 0.719644 | 4_1:+53383013 | None:intergenic |
| GTATGAAGTCACCACAACGG+AGG | 0.734924 | 4_1:+53382815 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAACTTGATATTTATTTAA+GGG | + | chr4_1:53381615-53381634 | None:intergenic | 15.0% |
| !!! | AATCAAATTTTAAAACTGAT+GGG | + | chr4_1:53381777-53381796 | None:intergenic | 15.0% |
| !! | ATTAAATTATTCAGAGAAAA+GGG | + | chr4_1:53383037-53383056 | None:intergenic | 15.0% |
| !! | TATTAAATTATTCAGAGAAA+AGG | + | chr4_1:53383038-53383057 | None:intergenic | 15.0% |
| !! | GTTTATGTAAGATCTAAAAA+TGG | + | chr4_1:53381237-53381256 | None:intergenic | 20.0% |
| !! | AATATAACTCATTAAACAGA+AGG | - | chr4_1:53381499-53381518 | Msa0555370:intron | 20.0% |
| !! | ATATAACTCATTAAACAGAA+GGG | - | chr4_1:53381500-53381519 | Msa0555370:intron | 20.0% |
| !! | GGTAACTTGATATTTATTTA+AGG | + | chr4_1:53381616-53381635 | None:intergenic | 20.0% |
| !!! | ATAAAAATTTAACTGACTCT+AGG | - | chr4_1:53381685-53381704 | Msa0555370:intron | 20.0% |
| !!! | GAATCAAATTTTAAAACTGA+TGG | + | chr4_1:53381778-53381797 | None:intergenic | 20.0% |
| !! | CAAAAAGTTTCAAAATTTGA+AGG | - | chr4_1:53382516-53382535 | Msa0555370:CDS | 20.0% |
| !!! | ATATTTTATAACCAAACCTT+TGG | - | chr4_1:53383133-53383152 | Msa0555370:five_prime_UTR | 20.0% |
| !! | TTTTTCTTAAAGTAGTGTGA+TGG | + | chr4_1:53380395-53380414 | None:intergenic | 25.0% |
| !! | ATTTCTCATCTCATTTCTTT+TGG | - | chr4_1:53380446-53380465 | Msa0555370:three_prime_UTR | 25.0% |
| !!! | GTTTCTTGGTTTATTTTTGT+TGG | + | chr4_1:53380666-53380685 | None:intergenic | 25.0% |
| ! | CAAAAATAAACCAAGAAACA+TGG | - | chr4_1:53380667-53380686 | Msa0555370:exon | 25.0% |
| ! | TGTAAGATCTAAAAATGGAT+AGG | + | chr4_1:53381232-53381251 | None:intergenic | 25.0% |
| ! | TATAACTCATTAAACAGAAG+GGG | - | chr4_1:53381501-53381520 | Msa0555370:intron | 25.0% |
| ! | CATATATTTGTTCATATGCA+CGG | + | chr4_1:53381577-53381596 | None:intergenic | 25.0% |
| ! | GTTAATTAAATGATGTCAAG+AGG | - | chr4_1:53381725-53381744 | Msa0555370:intron | 25.0% |
| !! | AAGAATTCCTTCTATTTTCT+GGG | + | chr4_1:53381901-53381920 | None:intergenic | 25.0% |
| ! | TGTCACATAGACTTTATAAA+TGG | + | chr4_1:53382090-53382109 | None:intergenic | 25.0% |
| ! | CGTTACATAGACTTTATAAA+TGG | + | chr4_1:53382131-53382150 | None:intergenic | 25.0% |
| !! | TTTTTGTGAAAGGAGATTTT+GGG | + | chr4_1:53382279-53382298 | None:intergenic | 25.0% |
| !! | TAACATGGATTATTCCTTAT+AGG | + | chr4_1:53382933-53382952 | None:intergenic | 25.0% |
| ! | TAGAGTAACAAACAAAACAA+AGG | + | chr4_1:53382980-53382999 | None:intergenic | 25.0% |
| !!! | TTTATTTTTGTTGGTTGTGG+TGG | + | chr4_1:53380657-53380676 | None:intergenic | 30.0% |
| !!! | TGGTTTATTTTTGTTGGTTG+TGG | + | chr4_1:53380660-53380679 | None:intergenic | 30.0% |
| CATGACTTTGTTAAAGAATG+AGG | + | chr4_1:53380856-53380875 | None:intergenic | 30.0% | |
| TACCCTTATTATTCTTGTCT+GGG | + | chr4_1:53381175-53381194 | None:intergenic | 30.0% | |
| TTGTATGAGATTTAGAAGCA+TGG | - | chr4_1:53381282-53381301 | Msa0555370:CDS | 30.0% | |
| ! | TTTAGAAGCATGGAATCTAT+AGG | - | chr4_1:53381292-53381311 | Msa0555370:CDS | 30.0% |
| GATTGAAACTCTGAACTAAA+AGG | + | chr4_1:53381548-53381567 | None:intergenic | 30.0% | |
| TTGCAGAGAATATTTCTTCA+AGG | + | chr4_1:53381637-53381656 | None:intergenic | 30.0% | |
| AGAAATATTCTCTGCAAATG+TGG | - | chr4_1:53381640-53381659 | Msa0555370:intron | 30.0% | |
| GAAATATTCTCTGCAAATGT+GGG | - | chr4_1:53381641-53381660 | Msa0555370:intron | 30.0% | |
| ! | CAAGAATTCCTTCTATTTTC+TGG | + | chr4_1:53381902-53381921 | None:intergenic | 30.0% |
| CAGAAAATAGAAGGAATTCT+TGG | - | chr4_1:53381900-53381919 | Msa0555370:intron | 30.0% | |
| ! | TGCTTTTATGCATAACTCTT+CGG | - | chr4_1:53381941-53381960 | Msa0555370:intron | 30.0% |
| AAAGTCTATGTGACATGTAT+TGG | - | chr4_1:53382095-53382114 | Msa0555370:intron | 30.0% | |
| AGAATCCCTAAAGTAATGAA+GGG | - | chr4_1:53382226-53382245 | Msa0555370:intron | 30.0% | |
| ! | GTTTTTGTGAAAGGAGATTT+TGG | + | chr4_1:53382280-53382299 | None:intergenic | 30.0% |
| !! | AATTGTGAGTGCTTTTGATT+TGG | - | chr4_1:53382408-53382427 | Msa0555370:CDS | 30.0% |
| ! | ATTTGAAGGTTTTACATGTG+AGG | - | chr4_1:53382530-53382549 | Msa0555370:CDS | 30.0% |
| ATCTTATACCACATTATCCA+GGG | - | chr4_1:53382563-53382582 | Msa0555370:CDS | 30.0% | |
| ATTCAAAGAATCCAAGTGAT+TGG | - | chr4_1:53382656-53382675 | Msa0555370:CDS | 30.0% | |
| ! | TAAGTCTTGTGATTACTTGA+AGG | - | chr4_1:53382774-53382793 | Msa0555370:CDS | 30.0% |
| GTATTTCATAAGCTATTGTC+TGG | - | chr4_1:53383088-53383107 | Msa0555370:five_prime_UTR | 30.0% | |
| !! | ATATTGTGAGGAGTTGATGA+GGG | + | chr4_1:53380515-53380534 | None:intergenic | 35.0% |
| !! | TATATTGTGAGGAGTTGATG+AGG | + | chr4_1:53380516-53380535 | None:intergenic | 35.0% |
| TCACTCACTCACTTTAACAT+GGG | - | chr4_1:53380567-53380586 | Msa0555370:three_prime_UTR | 35.0% | |
| !! | AGTTGTTGTTTCCTAAGAGT+TGG | + | chr4_1:53380695-53380714 | None:intergenic | 35.0% |
| AACTCTTAGGAAACAACAAC+TGG | - | chr4_1:53380694-53380713 | Msa0555370:CDS | 35.0% | |
| ACTCTTAGGAAACAACAACT+GGG | - | chr4_1:53380695-53380714 | Msa0555370:CDS | 35.0% | |
| TTTGTATGAAGTCACCACAA+CGG | + | chr4_1:53380767-53380786 | None:intergenic | 35.0% | |
| !! | AGAGTTTTGGTCGTTGTTAA+AGG | + | chr4_1:53380802-53380821 | None:intergenic | 35.0% |
| ! | AGAATGAGGTTTTGCCATAA+CGG | + | chr4_1:53380842-53380861 | None:intergenic | 35.0% |
| GAGTGAAGAATAAAAGCTTC+AGG | + | chr4_1:53380942-53380961 | None:intergenic | 35.0% | |
| GTCGTGAAATATATGTTGTG+TGG | - | chr4_1:53381048-53381067 | Msa0555370:CDS | 35.0% | |
| AACAAACTAGAAGCAGATTC+AGG | + | chr4_1:53381122-53381141 | None:intergenic | 35.0% | |
| CTCCCAGACAAGAATAATAA+GGG | - | chr4_1:53381170-53381189 | Msa0555370:CDS | 35.0% | |
| GTACCCTTATTATTCTTGTC+TGG | + | chr4_1:53381176-53381195 | None:intergenic | 35.0% | |
| AAACATACTTAAACCGAGTC+TGG | - | chr4_1:53381253-53381272 | Msa0555370:CDS | 35.0% | |
| AACATACTTAAACCGAGTCT+GGG | - | chr4_1:53381254-53381273 | Msa0555370:CDS | 35.0% | |
| TAGTTCAGAGTTTCAATCTC+TGG | - | chr4_1:53381550-53381569 | Msa0555370:intron | 35.0% | |
| TTAAATGATGTCAAGAGGCA+TGG | - | chr4_1:53381730-53381749 | Msa0555370:intron | 35.0% | |
| TACTAGACTGACTACCATAT+TGG | - | chr4_1:53381836-53381855 | Msa0555370:intron | 35.0% | |
| TTCCAAACCCAGAAAATAGA+AGG | - | chr4_1:53381891-53381910 | Msa0555370:intron | 35.0% | |
| ! | TTCCTTCTATTTTCTGGGTT+TGG | + | chr4_1:53381896-53381915 | None:intergenic | 35.0% |
| ! | GAATTCTTGGATTTTGCCTT+GGG | - | chr4_1:53381913-53381932 | Msa0555370:intron | 35.0% |
| ! | AATTCTTGGATTTTGCCTTG+GGG | - | chr4_1:53381914-53381933 | Msa0555370:intron | 35.0% |
| ! | GCTTTTATGCATAACTCTTC+GGG | - | chr4_1:53381942-53381961 | Msa0555370:intron | 35.0% |
| TGCTAAATCATAGGCACATT+GGG | - | chr4_1:53382025-53382044 | Msa0555370:intron | 35.0% | |
| GTGTCACATTCACATCTATA+TGG | + | chr4_1:53382068-53382087 | None:intergenic | 35.0% | |
| ! | CTATGTGACATGTATTGGTA+AGG | - | chr4_1:53382100-53382119 | Msa0555370:intron | 35.0% |
| GAGAATCCCTAAAGTAATGA+AGG | - | chr4_1:53382225-53382244 | Msa0555370:intron | 35.0% | |
| !!! | CTGACACTTGTTTTTGTGAA+AGG | + | chr4_1:53382289-53382308 | None:intergenic | 35.0% |
| AAAAACAAGTGTCAGAACAC+AGG | - | chr4_1:53382294-53382313 | Msa0555370:intron | 35.0% | |
| CAAGAATGAAAATCCAAGTG+TGG | - | chr4_1:53382351-53382370 | Msa0555370:intron | 35.0% | |
| AATCCAAGTGTGGTATTAGT+AGG | - | chr4_1:53382361-53382380 | Msa0555370:intron | 35.0% | |
| GTATTAGTAGGACATAGTCT+AGG | - | chr4_1:53382373-53382392 | Msa0555370:intron | 35.0% | |
| GGAACAAAGCTTTCAATGAT+AGG | - | chr4_1:53382491-53382510 | Msa0555370:CDS | 35.0% | |
| GATCTTATACCACATTATCC+AGG | - | chr4_1:53382562-53382581 | Msa0555370:CDS | 35.0% | |
| AATAACTTCCCTGGATAATG+TGG | + | chr4_1:53382574-53382593 | None:intergenic | 35.0% | |
| ACATTATCCAGGGAAGTTAT+TGG | - | chr4_1:53382573-53382592 | Msa0555370:CDS | 35.0% | |
| CATTATCCAGGGAAGTTATT+GGG | - | chr4_1:53382574-53382593 | Msa0555370:CDS | 35.0% | |
| ATTATCCAGGGAAGTTATTG+GGG | - | chr4_1:53382575-53382594 | Msa0555370:CDS | 35.0% | |
| TTATTGGGGTATGAGTATAC+TGG | - | chr4_1:53382589-53382608 | Msa0555370:CDS | 35.0% | |
| TATTGGGGTATGAGTATACT+GGG | - | chr4_1:53382590-53382609 | Msa0555370:CDS | 35.0% | |
| TGCAAATTATGCCAATCACT+TGG | + | chr4_1:53382670-53382689 | None:intergenic | 35.0% | |
| ATACAGAGTCAATACTCTTC+AGG | + | chr4_1:53382907-53382926 | None:intergenic | 35.0% | |
| TGACTCTGTATATGCCTATA+AGG | - | chr4_1:53382916-53382935 | Msa0555370:CDS | 35.0% | |
| TGTTATACAGCATGGTAACA+TGG | + | chr4_1:53382948-53382967 | None:intergenic | 35.0% | |
| CAGTACAATGTTATACAGCA+TGG | + | chr4_1:53382956-53382975 | None:intergenic | 35.0% | |
| CAAACTACTGAAACCACTAA+AGG | - | chr4_1:53383170-53383189 | Msa0555370:five_prime_UTR | 35.0% | |
| GGGAGTGGATATATATTGTG+AGG | + | chr4_1:53380527-53380546 | None:intergenic | 40.0% | |
| TGTTAAAGTGAGTGAGTGAG+CGG | + | chr4_1:53380566-53380585 | None:intergenic | 40.0% | |
| CTCACTCACTCACTTTAACA+TGG | - | chr4_1:53380566-53380585 | Msa0555370:three_prime_UTR | 40.0% | |
| AGCACACAAAAAAACTCCCT+TGG | - | chr4_1:53380593-53380612 | Msa0555370:three_prime_UTR | 40.0% | |
| CAAAAAAACTCCCTTGGACA+TGG | - | chr4_1:53380599-53380618 | Msa0555370:three_prime_UTR | 40.0% | |
| !! | ATTTTTGTTGGTTGTGGTGG+TGG | + | chr4_1:53380654-53380673 | None:intergenic | 40.0% |
| ! | AGAGTTGGTTCCATGTTTCT+TGG | + | chr4_1:53380680-53380699 | None:intergenic | 40.0% |
| GAAACATGGAACCAACTCTT+AGG | - | chr4_1:53380681-53380700 | Msa0555370:CDS | 40.0% | |
| GACCAAAACTCTATCTACTG+CGG | - | chr4_1:53380810-53380829 | Msa0555370:CDS | 40.0% | |
| ! | AACCGCAGTAGATAGAGTTT+TGG | + | chr4_1:53380815-53380834 | None:intergenic | 40.0% |
| ACACAACAGTGTAGTGTGTA+GGG | + | chr4_1:53380887-53380906 | None:intergenic | 40.0% | |
| AACCAATCCAGTTAGACTCA+CGG | + | chr4_1:53380986-53381005 | None:intergenic | 40.0% | |
| GAAATATATGTTGTGTGGCG+TGG | - | chr4_1:53381053-53381072 | Msa0555370:CDS | 40.0% | |
| CCTTATTATTCTTGTCTGGG+AGG | + | chr4_1:53381172-53381191 | None:intergenic | 40.0% | |
| CCTCCCAGACAAGAATAATA+AGG | - | chr4_1:53381169-53381188 | Msa0555370:CDS | 40.0% | |
| ACATACTTAAACCGAGTCTG+GGG | - | chr4_1:53381255-53381274 | Msa0555370:CDS | 40.0% | |
| AAACAGAAGGGGTAGATGTT+TGG | - | chr4_1:53381512-53381531 | Msa0555370:intron | 40.0% | |
| AACAGAAGGGGTAGATGTTT+GGG | - | chr4_1:53381513-53381532 | Msa0555370:intron | 40.0% | |
| ATGGCATGAGTTCACCAATA+TGG | + | chr4_1:53381853-53381872 | None:intergenic | 40.0% | |
| ! | GGAATTCTTGGATTTTGCCT+TGG | - | chr4_1:53381912-53381931 | Msa0555370:intron | 40.0% |
| GTGCTAAATCATAGGCACAT+TGG | - | chr4_1:53382024-53382043 | Msa0555370:intron | 40.0% | |
| TCCCTAAAGTAATGAAGGGT+TGG | - | chr4_1:53382230-53382249 | Msa0555370:intron | 40.0% | |
| GCCAACCCTTCATTACTTTA+GGG | + | chr4_1:53382234-53382253 | None:intergenic | 40.0% | |
| AGCCAACCCTTCATTACTTT+AGG | + | chr4_1:53382235-53382254 | None:intergenic | 40.0% | |
| TGTCCTACTAATACCACACT+TGG | + | chr4_1:53382367-53382386 | None:intergenic | 40.0% | |
| !!! | TGTGAGTGCTTTTGATTTGG+TGG | - | chr4_1:53382411-53382430 | Msa0555370:CDS | 40.0% |
| !!! | GCTTTTGATTTGGTGGAGAA+TGG | - | chr4_1:53382418-53382437 | Msa0555370:CDS | 40.0% |
| !! | AAGCTTTGTTCCCAACTTGT+GGG | + | chr4_1:53382483-53382502 | None:intergenic | 40.0% |
| !! | AAAGCTTTGTTCCCAACTTG+TGG | + | chr4_1:53382484-53382503 | None:intergenic | 40.0% |
| GCAAGCTATGTTGCATATTG+TGG | - | chr4_1:53382687-53382706 | Msa0555370:CDS | 40.0% | |
| ! | ATATTGTGGCTGGTTGGAAT+GGG | - | chr4_1:53382701-53382720 | Msa0555370:CDS | 40.0% |
| ! | GAATAAAGGTATGGTGCGTA+GGG | - | chr4_1:53382834-53382853 | Msa0555370:CDS | 40.0% |
| TGTTTACAAGCTCACACCAA+AGG | + | chr4_1:53383152-53383171 | None:intergenic | 40.0% | |
| !! | TGAGTGTGTTATTTGGGGAG+TGG | + | chr4_1:53380542-53380561 | None:intergenic | 45.0% |
| !! | AGCGGGTGAGTGTGTTATTT+GGG | + | chr4_1:53380548-53380567 | None:intergenic | 45.0% |
| GTTAAAGTGAGTGAGTGAGC+GGG | + | chr4_1:53380565-53380584 | None:intergenic | 45.0% | |
| GTCGTTGTTAAAGGAGTCGT+AGG | + | chr4_1:53380793-53380812 | None:intergenic | 45.0% | |
| GACACAACAGTGTAGTGTGT+AGG | + | chr4_1:53380888-53380907 | None:intergenic | 45.0% | |
| ACTCACTATCACGTGAGAGT+TGG | - | chr4_1:53380958-53380977 | Msa0555370:CDS | 45.0% | |
| CTCACTATCACGTGAGAGTT+GGG | - | chr4_1:53380959-53380978 | Msa0555370:CDS | 45.0% | |
| TCGCTGTTAGTTCCGATGAA+CGG | - | chr4_1:53381009-53381028 | Msa0555370:CDS | 45.0% | |
| CAACTCTCTACTCCGTTCAT+CGG | + | chr4_1:53381024-53381043 | None:intergenic | 45.0% | |
| GATGAACGGAGTAGAGAGTT+GGG | - | chr4_1:53381023-53381042 | Msa0555370:CDS | 45.0% | |
| CAAACACGTTAATCCACTCC+AGG | + | chr4_1:53381091-53381110 | None:intergenic | 45.0% | |
| !! | CTGGAGTGGATTAACGTGTT+TGG | - | chr4_1:53381089-53381108 | Msa0555370:CDS | 45.0% |
| CATACTTAAACCGAGTCTGG+GGG | - | chr4_1:53381256-53381275 | Msa0555370:CDS | 45.0% | |
| ATTGGTGAACTCATGCCATG+TGG | - | chr4_1:53381854-53381873 | Msa0555370:intron | 45.0% | |
| CTCATGCCATGTGGTGTATA+CGG | - | chr4_1:53381863-53381882 | Msa0555370:intron | 45.0% | |
| !! | AAAGTGCCGTATACACCACA+TGG | + | chr4_1:53381872-53381891 | None:intergenic | 45.0% |
| !! | GCATAAAAGCATTTGCCCCA+AGG | + | chr4_1:53381932-53381951 | None:intergenic | 45.0% |
| !! | CATAACTCTTCGGGTTGATC+TGG | - | chr4_1:53381951-53381970 | Msa0555370:intron | 45.0% |
| ACACTAGCTAATAGTCCTCC+TGG | - | chr4_1:53382002-53382021 | Msa0555370:intron | 45.0% | |
| ! | TCCTCCTGGTGCTAAATCAT+AGG | - | chr4_1:53382016-53382035 | Msa0555370:intron | 45.0% |
| TGTGCCTATGATTTAGCACC+AGG | + | chr4_1:53382023-53382042 | None:intergenic | 45.0% | |
| CCAAACACAAATGCAGCAAC+GGG | + | chr4_1:53382457-53382476 | None:intergenic | 45.0% | |
| CCCAAACACAAATGCAGCAA+CGG | + | chr4_1:53382458-53382477 | None:intergenic | 45.0% | |
| CCGTTGCTGCATTTGTGTTT+GGG | - | chr4_1:53382455-53382474 | Msa0555370:CDS | 45.0% | |
| !! | AGCTTTGTTCCCAACTTGTG+GGG | + | chr4_1:53382482-53382501 | None:intergenic | 45.0% |
| TCATACCCCAATAACTTCCC+TGG | + | chr4_1:53382583-53382602 | None:intergenic | 45.0% | |
| TGAGTATACTGGGACAGAGT+TGG | - | chr4_1:53382600-53382619 | Msa0555370:CDS | 45.0% | |
| GCTATGTTGCATATTGTGGC+TGG | - | chr4_1:53382691-53382710 | Msa0555370:CDS | 45.0% | |
| TGTTGCATATTGTGGCTGGT+TGG | - | chr4_1:53382695-53382714 | Msa0555370:CDS | 45.0% | |
| ! | CATATTGTGGCTGGTTGGAA+TGG | - | chr4_1:53382700-53382719 | Msa0555370:CDS | 45.0% |
| ! | AGTTTGAGGTGAAGGTGAAG+AGG | - | chr4_1:53382734-53382753 | Msa0555370:CDS | 45.0% |
| GGTTGCGACGAATAAAGGTA+TGG | - | chr4_1:53382825-53382844 | Msa0555370:CDS | 45.0% | |
| ! | CGAATAAAGGTATGGTGCGT+AGG | - | chr4_1:53382833-53382852 | Msa0555370:CDS | 45.0% |
| AGTCAATACTCTTCAGGCAC+AGG | + | chr4_1:53382901-53382920 | None:intergenic | 45.0% | |
| ACAAGCTCACACCAAAGGTT+TGG | + | chr4_1:53383147-53383166 | None:intergenic | 45.0% | |
| GATGAGGGAAGGGAAGTTTG+TGG | + | chr4_1:53380500-53380519 | None:intergenic | 50.0% | |
| !! | GTGAGGAGTTGATGAGGGAA+GGG | + | chr4_1:53380510-53380529 | None:intergenic | 50.0% |
| !! | TGTGAGGAGTTGATGAGGGA+AGG | + | chr4_1:53380511-53380530 | None:intergenic | 50.0% |
| !! | GCGGGTGAGTGTGTTATTTG+GGG | + | chr4_1:53380547-53380566 | None:intergenic | 50.0% |
| ! | GAGCGGGTGAGTGTGTTATT+TGG | + | chr4_1:53380549-53380568 | None:intergenic | 50.0% |
| GTGTCTGTTGCCATGTCCAA+GGG | + | chr4_1:53380612-53380631 | None:intergenic | 50.0% | |
| TGTGTCTGTTGCCATGTCCA+AGG | + | chr4_1:53380613-53380632 | None:intergenic | 50.0% | |
| TGCGGAGATTGAGGTCTAGT+GGG | + | chr4_1:53380734-53380753 | None:intergenic | 50.0% | |
| TTGCGGAGATTGAGGTCTAG+TGG | + | chr4_1:53380735-53380754 | None:intergenic | 50.0% | |
| GTATGAAGTCACCACAACGG+AGG | + | chr4_1:53380764-53380783 | None:intergenic | 50.0% | |
| TACTGCGGTTCAAGCCGTTA+TGG | - | chr4_1:53380825-53380844 | Msa0555370:CDS | 50.0% | |
| GACCGTGAGTCTAACTGGAT+TGG | - | chr4_1:53380981-53381000 | Msa0555370:CDS | 50.0% | |
| CGATGAACGGAGTAGAGAGT+TGG | - | chr4_1:53381022-53381041 | Msa0555370:CDS | 50.0% | |
| TTGTGTGGCGTGGTACTACT+AGG | - | chr4_1:53381063-53381082 | Msa0555370:CDS | 50.0% | |
| TGTGTGGCGTGGTACTACTA+GGG | - | chr4_1:53381064-53381083 | Msa0555370:CDS | 50.0% | |
| CATACAAACTCCCCCAGACT+CGG | + | chr4_1:53381269-53381288 | None:intergenic | 50.0% | |
| ! | TGATGTCAAGAGGCATGGCT+AGG | - | chr4_1:53381735-53381754 | Msa0555370:intron | 50.0% |
| ! | AAGAGGCATGGCTAGGATGA+TGG | - | chr4_1:53381742-53381761 | Msa0555370:intron | 50.0% |
| GCCTATGATTTAGCACCAGG+AGG | + | chr4_1:53382020-53382039 | None:intergenic | 50.0% | |
| !! | AGGAGATTTTGGGTCGTCTG+AGG | + | chr4_1:53382269-53382288 | None:intergenic | 50.0% |
| CCCGTTGCTGCATTTGTGTT+TGG | - | chr4_1:53382454-53382473 | Msa0555370:CDS | 50.0% | |
| TGTTTGGGTCCCCACAAGTT+GGG | - | chr4_1:53382470-53382489 | Msa0555370:CDS | 50.0% | |
| CTGGTTGGAATGGGAGTGAT+GGG | - | chr4_1:53382710-53382729 | Msa0555370:CDS | 50.0% | |
| TGGTTGGAATGGGAGTGATG+GGG | - | chr4_1:53382711-53382730 | Msa0555370:CDS | 50.0% | |
| ! | TGATGGGGAGTTTGAGGTGA+AGG | - | chr4_1:53382726-53382745 | Msa0555370:CDS | 50.0% |
| GGTGAAGGTGAAGAGGAGTT+TGG | - | chr4_1:53382741-53382760 | Msa0555370:CDS | 50.0% | |
| !! | TGGTGGGTTGCGACGAATAA+AGG | - | chr4_1:53382820-53382839 | Msa0555370:CDS | 50.0% |
| ! | TAAAGGTATGGTGCGTAGGG+AGG | - | chr4_1:53382837-53382856 | Msa0555370:CDS | 50.0% |
| !! | ATGGGTTGATGCACCAGAGA+AGG | - | chr4_1:53382867-53382886 | Msa0555370:CDS | 50.0% |
| AATACTCTTCAGGCACAGGC+AGG | + | chr4_1:53382897-53382916 | None:intergenic | 50.0% | |
| GCGAGGTTATGCACCTTTAG+TGG | + | chr4_1:53383186-53383205 | None:intergenic | 50.0% | |
| GGATGAGGTTGCGGAGATTG+AGG | + | chr4_1:53380743-53380762 | None:intergenic | 55.0% | |
| CACAACGGAGGATGAGGTTG+CGG | + | chr4_1:53380752-53380771 | None:intergenic | 55.0% | |
| AGTCACCACAACGGAGGATG+AGG | + | chr4_1:53380758-53380777 | None:intergenic | 55.0% | |
| GTTGGGACCGTGAGTCTAAC+TGG | - | chr4_1:53380976-53380995 | Msa0555370:CDS | 55.0% | |
| GTACTACTAGGGACCTGGAG+TGG | - | chr4_1:53381075-53381094 | Msa0555370:CDS | 55.0% | |
| ! | AGGCATGGCTAGGATGATGG+TGG | - | chr4_1:53381745-53381764 | Msa0555370:intron | 55.0% |
| ! | GGCATGGCTAGGATGATGGT+GGG | - | chr4_1:53381746-53381765 | Msa0555370:intron | 55.0% |
| ! | GCATGGCTAGGATGATGGTG+GGG | - | chr4_1:53381747-53381766 | Msa0555370:intron | 55.0% |
| TAGCAGCAGCAGTGACGATG+AGG | - | chr4_1:53382195-53382214 | Msa0555370:intron | 55.0% | |
| GTGTTTGGGTCCCCACAAGT+TGG | - | chr4_1:53382469-53382488 | Msa0555370:CDS | 55.0% | |
| GCTGGTTGGAATGGGAGTGA+TGG | - | chr4_1:53382709-53382728 | Msa0555370:CDS | 55.0% | |
| ! | TGGGAGTGATGGGGAGTTTG+AGG | - | chr4_1:53382720-53382739 | Msa0555370:CDS | 55.0% |
| !! | GAAGGAAGAGTGTCACGTGC+CGG | - | chr4_1:53382792-53382811 | Msa0555370:CDS | 55.0% |
| GTATGGTGCGTAGGGAGGAT+GGG | - | chr4_1:53382842-53382861 | Msa0555370:CDS | 55.0% | |
| TATGGTGCGTAGGGAGGATG+GGG | - | chr4_1:53382843-53382862 | Msa0555370:CDS | 55.0% | |
| ! | GGTTGATGCACCAGAGAAGG+AGG | - | chr4_1:53382870-53382889 | Msa0555370:CDS | 55.0% |
| CGCAACCTCATCCTCCGTTG+TGG | - | chr4_1:53380750-53380769 | Msa0555370:CDS | 60.0% | |
| GCGTGGTACTACTAGGGACC+TGG | - | chr4_1:53381070-53381089 | Msa0555370:CDS | 60.0% | |
| GGTATGGTGCGTAGGGAGGA+TGG | - | chr4_1:53382841-53382860 | Msa0555370:CDS | 60.0% | |
| TGCGTAGGGAGGATGGGGAA+TGG | - | chr4_1:53382848-53382867 | Msa0555370:CDS | 60.0% | |
| GCGTAGGGAGGATGGGGAAT+GGG | - | chr4_1:53382849-53382868 | Msa0555370:CDS | 60.0% | |
| ACAGGCAGGTCCTCCTTCTC+TGG | + | chr4_1:53382883-53382902 | None:intergenic | 60.0% | |
| ! | AGTGTCACGTGCCGGCGTCA+TGG | - | chr4_1:53382800-53382819 | Msa0555370:CDS | 65.0% |
| ! | TCACGTGCCGGCGTCATGGT+GGG | - | chr4_1:53382804-53382823 | Msa0555370:CDS | 65.0% |
| GTCGCAACCCACCATGACGC+CGG | + | chr4_1:53382814-53382833 | None:intergenic | 65.0% | |
| ! | GTCACGTGCCGGCGTCATGG+TGG | - | chr4_1:53382803-53382822 | Msa0555370:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 53380392 | 53383206 | 53380392 | ID=Msa0555370;Name=Msa0555370 |
| chr4_1 | mRNA | 53380392 | 53383206 | 53380392 | ID=Msa0555370-mRNA-1;Parent=Msa0555370;Name=Msa0555370-mRNA-1;_AED=0.02;_eAED=0.02;_QI=193|1|1|1|1|1|2|288|445 |
| chr4_1 | exon | 53380392 | 53381410 | 53380392 | ID=Msa0555370-mRNA-1:exon:15478;Parent=Msa0555370-mRNA-1 |
| chr4_1 | exon | 53382407 | 53383206 | 53382407 | ID=Msa0555370-mRNA-1:exon:15477;Parent=Msa0555370-mRNA-1 |
| chr4_1 | five_prime_UTR | 53383014 | 53383206 | 53383014 | ID=Msa0555370-mRNA-1:five_prime_utr;Parent=Msa0555370-mRNA-1 |
| chr4_1 | CDS | 53382407 | 53383013 | 53382407 | ID=Msa0555370-mRNA-1:cds;Parent=Msa0555370-mRNA-1 |
| chr4_1 | CDS | 53380680 | 53381410 | 53380680 | ID=Msa0555370-mRNA-1:cds;Parent=Msa0555370-mRNA-1 |
| chr4_1 | three_prime_UTR | 53380392 | 53380679 | 53380392 | ID=Msa0555370-mRNA-1:three_prime_utr;Parent=Msa0555370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
