Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649420 | XP_003607601.1 | 96.275 | 349 | 13 | 0 | 1 | 349 | 94 | 442 | 0.0 | 694 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649420 | sp|Q9SJI7|PLA20_ARATH | 59.544 | 351 | 129 | 4 | 1 | 347 | 70 | 411 | 3.70e-148 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649420 | G7JCM9 | 96.275 | 349 | 13 | 0 | 1 | 349 | 94 | 442 | 0.0 | 694 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000780 | Msa0649420 | 0.849002 | 4.274556e-60 | -8.615850e-47 |
| Msa0038350 | Msa0649420 | -0.829817 | 4.162728e-55 | -8.615850e-47 |
| Msa0043940 | Msa0649420 | 0.858518 | 7.795488e-63 | -8.615850e-47 |
| Msa0048020 | Msa0649420 | 0.805607 | 1.230339e-49 | -8.615850e-47 |
| Msa0050720 | Msa0649420 | 0.811565 | 6.569528e-51 | -8.615850e-47 |
| Msa0050770 | Msa0649420 | 0.804683 | 1.919948e-49 | -8.615850e-47 |
| Msa0061310 | Msa0649420 | 0.800405 | 1.463658e-48 | -8.615850e-47 |
| Msa0073820 | Msa0649420 | 0.823487 | 1.348956e-53 | -8.615850e-47 |
| Msa0079770 | Msa0649420 | 0.831730 | 1.414218e-55 | -8.615850e-47 |
| Msa0084630 | Msa0649420 | 0.816549 | 5.222008e-52 | -8.615850e-47 |
| Msa0092710 | Msa0649420 | 0.847840 | 8.967038e-60 | -8.615850e-47 |
| Msa0605250 | Msa0649420 | 0.806097 | 9.705403e-50 | -8.615850e-47 |
| Msa0610620 | Msa0649420 | 0.815325 | 9.797463e-52 | -8.615850e-47 |
| Msa0628060 | Msa0649420 | 0.808603 | 2.855216e-50 | -8.615850e-47 |
| Msa0629290 | Msa0649420 | 0.805318 | 1.414338e-49 | -8.615850e-47 |
| Msa0646640 | Msa0649420 | 0.801005 | 1.103947e-48 | -8.615850e-47 |
| Msa0649310 | Msa0649420 | 0.851887 | 6.621933e-61 | -8.615850e-47 |
| Msa0649380 | Msa0649420 | 0.990719 | 5.464110e-184 | -8.615850e-47 |
| Msa0649420 | Msa0651240 | 0.805113 | 1.561483e-49 | -8.615850e-47 |
| Msa0649420 | Msa0657670 | 0.801575 | 8.439919e-49 | -8.615850e-47 |
| Msa0649420 | Msa0675010 | 0.818729 | 1.683637e-52 | -8.615850e-47 |
| Msa0649420 | Msa0704220 | 0.830418 | 2.969602e-55 | -8.615850e-47 |
| Msa0649420 | Msa0720270 | 0.804172 | 2.454469e-49 | -8.615850e-47 |
| Msa0649420 | Msa0760890 | 0.837082 | 6.409998e-57 | -8.615850e-47 |
| Msa0649420 | Msa0769830 | 0.822841 | 1.909192e-53 | -8.615850e-47 |
| Msa0649420 | Msa0780140 | 0.804656 | 1.945076e-49 | -8.615850e-47 |
| Msa0649420 | Msa0802210 | 0.802329 | 5.907724e-49 | -8.615850e-47 |
| Msa0649420 | Msa0813320 | -0.805666 | 1.195786e-49 | -8.615850e-47 |
| Msa0649420 | Msa0848360 | 0.808504 | 2.998977e-50 | -8.615850e-47 |
| Msa0649420 | Msa0848760 | 0.818092 | 2.347316e-52 | -8.615850e-47 |
| Msa0649420 | Msa0863250 | 0.804226 | 2.390821e-49 | -8.615850e-47 |
| Msa0649420 | Msa0875630 | 0.806626 | 7.507621e-50 | -8.615850e-47 |
| Msa0649420 | Msa0882700 | 0.840122 | 1.051541e-57 | -8.615850e-47 |
| Msa0649420 | Msa0890250 | 0.804646 | 1.954957e-49 | -8.615850e-47 |
| Msa0649420 | Msa0909710 | 0.816346 | 5.797947e-52 | -8.615850e-47 |
| Msa0649420 | Msa0970050 | 0.804506 | 2.090954e-49 | -8.615850e-47 |
| Msa0649420 | Msa1004210 | 0.812771 | 3.584180e-51 | -8.615850e-47 |
| Msa0649420 | Msa1016670 | 0.809328 | 1.997982e-50 | -8.615850e-47 |
| Msa0649420 | Msa1030870 | 0.834261 | 3.320515e-56 | -8.615850e-47 |
| Msa0649420 | Msa1038050 | 0.800833 | 1.197416e-48 | -8.615850e-47 |
| Msa0649420 | Msa1046610 | 0.812679 | 3.754949e-51 | -8.615850e-47 |
| Msa0649420 | Msa1058010 | 0.841330 | 5.073752e-58 | -8.615850e-47 |
| Msa0649420 | Msa1069960 | 0.817614 | 3.009050e-52 | -8.615850e-47 |
| Msa0649420 | Msa1073840 | 0.824526 | 7.697534e-54 | -8.615850e-47 |
| Msa0649420 | Msa1080620 | 0.811371 | 7.239797e-51 | -8.615850e-47 |
| Msa0649420 | Msa1080690 | 0.804803 | 1.812421e-49 | -8.615850e-47 |
| Msa0649420 | Msa1080840 | 0.849510 | 3.087523e-60 | -8.615850e-47 |
| Msa0649420 | Msa1102540 | 0.821433 | 4.048402e-53 | -8.615850e-47 |
| Msa0649420 | Msa1118980 | 0.850028 | 2.213030e-60 | -8.615850e-47 |
| Msa0649420 | Msa1119860 | 0.807022 | 6.192253e-50 | -8.615850e-47 |
| Msa0649420 | Msa1144950 | 0.805721 | 1.164183e-49 | -8.615850e-47 |
| Msa0649420 | Msa1151820 | 0.829424 | 5.187504e-55 | -8.615850e-47 |
| Msa0649420 | Msa1157730 | 0.812511 | 4.085844e-51 | -8.615850e-47 |
| Msa0649420 | Msa1166140 | -0.800313 | 1.528131e-48 | -8.615850e-47 |
| Msa0649420 | Msa1166240 | -0.812861 | 3.425793e-51 | -8.615850e-47 |
| Msa0649420 | Msa1178160 | 0.808210 | 3.463347e-50 | -8.615850e-47 |
| Msa0649420 | Msa1183390 | 0.829824 | 4.147288e-55 | -8.615850e-47 |
| Msa0649420 | Msa1271510 | 0.814408 | 1.563979e-51 | -8.615850e-47 |
| Msa0649420 | Msa1293050 | 0.817474 | 3.236443e-52 | -8.615850e-47 |
| Msa0649420 | Msa1305750 | 0.806428 | 8.266813e-50 | -8.615850e-47 |
| Msa0649420 | Msa1309360 | 0.830895 | 2.269629e-55 | -8.615850e-47 |
| Msa0649420 | Msa1310110 | 0.817021 | 4.093193e-52 | -8.615850e-47 |
| Msa0649420 | Msa1320380 | 0.807841 | 4.150519e-50 | -8.615850e-47 |
| Msa0649420 | Msa1385620 | 0.800784 | 1.225206e-48 | -8.615850e-47 |
| Msa0649420 | Msa1385900 | 0.809905 | 1.501846e-50 | -8.615850e-47 |
| Msa0649420 | Msa1395230 | -0.817602 | 3.029125e-52 | -8.615850e-47 |
| Msa0649420 | Msa1408710 | 0.806102 | 9.684028e-50 | -8.615850e-47 |
| Msa0649420 | Msa1412520 | 0.816543 | 5.237996e-52 | -8.615850e-47 |
| Msa0649420 | Msa1420520 | 0.847367 | 1.209279e-59 | -8.615850e-47 |
| Msa0649420 | Msa1431730 | 0.814946 | 1.188983e-51 | -8.615850e-47 |
| Msa0649420 | Msa1439120 | 0.859881 | 3.042248e-63 | -8.615850e-47 |
| Msa0649420 | Msa1440220 | 0.844891 | 5.707406e-59 | -8.615850e-47 |
| Msa0649420 | Msa1440610 | 0.810905 | 9.134590e-51 | -8.615850e-47 |
| Msa0649420 | Msa1442290 | 0.819787 | 9.668505e-53 | -8.615850e-47 |
| Msa0649420 | Msa1447230 | 0.803510 | 3.368860e-49 | -8.615850e-47 |
| Msa0649420 | Msa1455660 | 0.859104 | 5.209549e-63 | -8.615850e-47 |
| Msa0127440 | Msa0649420 | 0.817634 | 2.978065e-52 | -8.615850e-47 |
| Msa0141430 | Msa0649420 | 0.804503 | 2.093484e-49 | -8.615850e-47 |
| Msa0171920 | Msa0649420 | 0.805189 | 1.504903e-49 | -8.615850e-47 |
| Msa0172370 | Msa0649420 | 0.805523 | 1.280908e-49 | -8.615850e-47 |
| Msa0182640 | Msa0649420 | 0.829538 | 4.867343e-55 | -8.615850e-47 |
| Msa0198290 | Msa0649420 | 0.823559 | 1.297794e-53 | -8.615850e-47 |
| Msa0200950 | Msa0649420 | -0.824526 | 7.695009e-54 | -8.615850e-47 |
| Msa0367370 | Msa0649420 | 0.810687 | 1.018221e-50 | -8.615850e-47 |
| Msa0380650 | Msa0649420 | 0.845910 | 3.023227e-59 | -8.615850e-47 |
| Msa0430290 | Msa0649420 | 0.847502 | 1.110211e-59 | -8.615850e-47 |
| Msa0432720 | Msa0649420 | 0.806352 | 8.576939e-50 | -8.615850e-47 |
| Msa0239660 | Msa0649420 | 0.806273 | 8.911182e-50 | -8.615850e-47 |
| Msa0242290 | Msa0649420 | 0.800395 | 1.470758e-48 | -8.615850e-47 |
| Msa0258670 | Msa0649420 | -0.808168 | 3.535427e-50 | -8.615850e-47 |
| Msa0298830 | Msa0649420 | 0.806188 | 9.286261e-50 | -8.615850e-47 |
| Msa0305340 | Msa0649420 | -0.804455 | 2.142140e-49 | -8.615850e-47 |
| Msa0318250 | Msa0649420 | 0.827857 | 1.240763e-54 | -8.615850e-47 |
| Msa0318270 | Msa0649420 | 0.853201 | 2.793532e-61 | -8.615850e-47 |
| Msa0318310 | Msa0649420 | 0.847116 | 1.417522e-59 | -8.615850e-47 |
| Msa0323990 | Msa0649420 | 0.823089 | 1.670910e-53 | -8.615850e-47 |
| Msa0334980 | Msa0649420 | 0.802605 | 5.183143e-49 | -8.615850e-47 |
| Msa0341460 | Msa0649420 | -0.807792 | 4.251802e-50 | -8.615850e-47 |
| Msa0526640 | Msa0649420 | -0.825111 | 5.602592e-54 | -8.615850e-47 |
| Msa0527600 | Msa0649420 | 0.807525 | 4.844748e-50 | -8.615850e-47 |
| Msa0530930 | Msa0649420 | 0.805078 | 1.587702e-49 | -8.615850e-47 |
| Msa0555370 | Msa0649420 | 0.888255 | 6.944960e-73 | -8.615850e-47 |
| Msa0578070 | Msa0649420 | -0.807424 | 5.089294e-50 | -8.615850e-47 |
| Msa0587900 | Msa0649420 | 0.817715 | 2.855300e-52 | -8.615850e-47 |
| Msa0602210 | Msa0649420 | -0.806163 | 9.398648e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649420 | MtrunA17_Chr4g0041311 | 96.275 | 349 | 13 | 0 | 1 | 349 | 94 | 442 | 0.0 | 694 |
| Msa0649420 | MtrunA17_Chr2g0283561 | 46.903 | 339 | 147 | 4 | 4 | 334 | 110 | 423 | 2.04e-100 | 303 |
| Msa0649420 | MtrunA17_Chr4g0046011 | 38.529 | 340 | 169 | 5 | 4 | 334 | 75 | 383 | 4.68e-73 | 231 |
| Msa0649420 | MtrunA17_Chr4g0046001 | 39.474 | 342 | 163 | 7 | 4 | 334 | 84 | 392 | 1.16e-72 | 231 |
| Msa0649420 | MtrunA17_Chr7g0260671 | 35.393 | 356 | 178 | 5 | 8 | 337 | 146 | 475 | 9.41e-66 | 216 |
| Msa0649420 | MtrunA17_Chr4g0039301 | 35.457 | 361 | 174 | 9 | 8 | 340 | 171 | 500 | 3.65e-63 | 209 |
| Msa0649420 | MtrunA17_Chr7g0260681 | 33.333 | 300 | 150 | 5 | 8 | 282 | 146 | 420 | 1.06e-45 | 161 |
| Msa0649420 | MtrunA17_Chr5g0399641 | 30.530 | 321 | 168 | 8 | 8 | 299 | 201 | 495 | 1.18e-36 | 139 |
| Msa0649420 | MtrunA17_Chr7g0214711 | 33.779 | 299 | 128 | 11 | 8 | 280 | 177 | 431 | 6.06e-33 | 128 |
| Msa0649420 | MtrunA17_Chr4g0055691 | 31.875 | 320 | 156 | 8 | 8 | 299 | 195 | 480 | 9.21e-32 | 125 |
| Msa0649420 | MtrunA17_Chr7g0250561 | 30.564 | 337 | 167 | 11 | 6 | 300 | 139 | 450 | 1.21e-30 | 120 |
| Msa0649420 | MtrunA17_Chr7g0250611 | 31.847 | 314 | 156 | 12 | 6 | 298 | 145 | 421 | 1.32e-30 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649420 | AT2G42690.1 | 59.544 | 351 | 129 | 4 | 1 | 347 | 70 | 411 | 3.76e-149 | 427 |
| Msa0649420 | AT4G18550.1 | 43.363 | 339 | 155 | 6 | 6 | 334 | 93 | 404 | 8.04e-87 | 268 |
| Msa0649420 | AT4G18550.2 | 43.363 | 339 | 155 | 6 | 6 | 334 | 110 | 421 | 1.08e-86 | 268 |
| Msa0649420 | AT1G06250.1 | 40.000 | 340 | 170 | 5 | 4 | 334 | 76 | 390 | 9.93e-78 | 245 |
| Msa0649420 | AT1G06250.2 | 40.199 | 301 | 146 | 5 | 43 | 334 | 1 | 276 | 4.40e-66 | 211 |
| Msa0649420 | AT1G51440.1 | 36.740 | 362 | 165 | 10 | 8 | 335 | 160 | 491 | 1.37e-61 | 206 |
| Msa0649420 | AT2G30550.2 | 35.813 | 363 | 168 | 10 | 8 | 337 | 173 | 503 | 5.91e-61 | 204 |
| Msa0649420 | AT1G06800.1 | 37.430 | 358 | 166 | 11 | 8 | 335 | 157 | 486 | 9.58e-60 | 201 |
| Msa0649420 | AT1G30370.1 | 32.240 | 366 | 188 | 11 | 8 | 346 | 186 | 518 | 3.48e-53 | 183 |
| Msa0649420 | AT4G18550.3 | 41.048 | 229 | 102 | 4 | 6 | 226 | 110 | 313 | 8.32e-51 | 172 |
| Msa0649420 | AT2G30550.1 | 34.951 | 309 | 136 | 10 | 8 | 283 | 173 | 449 | 3.39e-45 | 161 |
| Msa0649420 | AT1G06800.2 | 36.721 | 305 | 135 | 11 | 8 | 282 | 157 | 433 | 1.94e-44 | 158 |
| Msa0649420 | AT2G31690.1 | 32.013 | 303 | 145 | 9 | 2 | 280 | 155 | 420 | 9.60e-37 | 138 |
| Msa0649420 | AT1G05800.1 | 32.343 | 303 | 141 | 9 | 2 | 280 | 147 | 409 | 1.11e-33 | 130 |
| Msa0649420 | AT4G16820.1 | 30.094 | 319 | 168 | 8 | 8 | 298 | 187 | 478 | 1.25e-30 | 122 |
| Msa0649420 | AT2G44810.1 | 29.907 | 321 | 162 | 11 | 8 | 298 | 68 | 355 | 3.51e-25 | 104 |
| Msa0649420 | AT2G44810.2 | 29.595 | 321 | 163 | 10 | 8 | 298 | 158 | 445 | 6.98e-25 | 105 |
Find 149 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCTCATCTCATTTCTTT+TGG | 0.177812 | 4_3:-56066176 | Msa0649420:five_prime_UTR |
| AGCGGGTGAGTGTGTTATTT+GGG | 0.254574 | 4_3:+56066077 | None:intergenic |
| CATTATCCAGGGAAGTTATT+GGG | 0.257904 | 4_3:-56064038 | Msa0649420:CDS |
| AGAGTTGGTTCCATGTTTCT+TGG | 0.259076 | 4_3:+56065945 | None:intergenic |
| ACCTTTGGTGTGAGCCTATA+AGG | 0.261287 | 4_3:-56063464 | Msa0649420:three_prime_UTR |
| CCCGTTGCTGCATTTGTGTT+TGG | 0.261484 | 4_3:-56064158 | Msa0649420:CDS |
| GTACCCTTATTATTCTTGTC+TGG | 0.276776 | 4_3:+56065450 | None:intergenic |
| TAACATGGATTATTCCTTAT+AGG | 0.281197 | 4_3:+56063450 | None:intergenic |
| GCCAACCCTTCATTACTTTA+GGG | 0.284383 | 4_3:+56064381 | None:intergenic |
| CCTCCCAGACAAGAATAATA+AGG | 0.286496 | 4_3:-56065454 | Msa0649420:CDS |
| ACATTATCCAGGGAAGTTAT+TGG | 0.290351 | 4_3:-56064039 | Msa0649420:CDS |
| TAACATGGATTATTCCTTAT+AGG | 0.303692 | 4_3:+56063682 | None:intergenic |
| GAGCGGGTGAGTGTGTTATT+TGG | 0.304206 | 4_3:+56066076 | None:intergenic |
| AGCCAACCCTTCATTACTTT+AGG | 0.309054 | 4_3:+56064380 | None:intergenic |
| CCGTTGCTGCATTTGTGTTT+GGG | 0.335466 | 4_3:-56064157 | Msa0649420:CDS |
| CTGGTTGGAATGGGAGTGAT+GGG | 0.360921 | 4_3:-56063902 | Msa0649420:CDS |
| GGAACAAAGCTTTCAATGAT+AGG | 0.361448 | 4_3:-56064121 | Msa0649420:CDS |
| GTGTAGGGAGGATGGGGAAT+GGG | 0.361549 | 4_3:-56063763 | Msa0649420:CDS |
| GGTGAAGGTGAAGAGGAGTT+TGG | 0.362136 | 4_3:-56063871 | Msa0649420:CDS |
| GAAACATGGAACCAACTCTT+AGG | 0.363153 | 4_3:-56065941 | Msa0649420:five_prime_UTR |
| TGGTGGGTTGCGACGAATAA+AGG | 0.365880 | 4_3:-56063792 | Msa0649420:CDS |
| GTTGGGACCGTGAGTCTAAC+TGG | 0.369388 | 4_3:-56065647 | Msa0649420:CDS |
| ACAGGCAGGTCCTCCTTCTC+TGG | 0.374799 | 4_3:+56063732 | None:intergenic |
| TGACTCTGTATATGCCTATA+AGG | 0.379605 | 4_3:-56063696 | Msa0649420:three_prime_UTR |
| CTCACTTTCACGTGAGAGTT+GGG | 0.381537 | 4_3:-56065664 | Msa0649420:CDS |
| TATTAAATTATTCAGAGAAA+AGG | 0.382492 | 4_3:+56063345 | None:intergenic |
| TATTAAATTATTCAGAGAAA+AGG | 0.382492 | 4_3:+56063577 | None:intergenic |
| AACCGCAGTAGATAGAGTTT+TGG | 0.382882 | 4_3:+56065810 | None:intergenic |
| AACTCTTAGGAAACAACAAC+TGG | 0.382925 | 4_3:-56065928 | Msa0649420:five_prime_UTR |
| TACCCTTATTATTCTTGTCT+GGG | 0.392329 | 4_3:+56065451 | None:intergenic |
| GCTGGTTGGAATGGGAGTGA+TGG | 0.408221 | 4_3:-56063903 | Msa0649420:CDS |
| TGGGAGTGATGGGGAGTTTG+AGG | 0.408734 | 4_3:-56063892 | Msa0649420:CDS |
| ATACAGAGTCAATACTCTTC+AGG | 0.411989 | 4_3:+56063708 | None:intergenic |
| TGTTTGGGTCCCCACAAGTT+GGG | 0.424136 | 4_3:-56064142 | Msa0649420:CDS |
| GTATGGTGTGTAGGGAGGAT+GGG | 0.426496 | 4_3:-56063770 | Msa0649420:CDS |
| TTATTGGGGTATGAGTATAC+TGG | 0.426672 | 4_3:-56064023 | Msa0649420:CDS |
| ATAGGCTCACACCAAAGGTT+TGG | 0.428821 | 4_3:+56063468 | None:intergenic |
| CATATTGTGGCTGGTTGGAA+TGG | 0.429515 | 4_3:-56063912 | Msa0649420:CDS |
| TAAGTCTTGTGATTACTTGA+AGG | 0.431881 | 4_3:-56063838 | Msa0649420:CDS |
| AATCCAAGTGTGGTATTAGT+AGG | 0.433511 | 4_3:-56064251 | Msa0649420:CDS |
| TACTGCGGTTCAAGCCGTTA+TGG | 0.436707 | 4_3:-56065797 | Msa0649420:five_prime_UTR |
| ACAAGCTCACACCAAAGGTT+TGG | 0.439871 | 4_3:+56063236 | None:intergenic |
| CCAAACACAAATGCAGCAAC+GGG | 0.442597 | 4_3:+56064158 | None:intergenic |
| ATTAAATTATTCAGAGAAAA+GGG | 0.443253 | 4_3:+56063346 | None:intergenic |
| ATTAAATTATTCAGAGAAAA+GGG | 0.443253 | 4_3:+56063578 | None:intergenic |
| GATCTTATACCACATTATCC+AGG | 0.444039 | 4_3:-56064050 | Msa0649420:CDS |
| GAGTGAAGAATAAAAGCTTC+AGG | 0.445100 | 4_3:+56065684 | None:intergenic |
| GGTATGGTGTGTAGGGAGGA+TGG | 0.447748 | 4_3:-56063771 | Msa0649420:CDS |
| CGAATAAAGGTATGGTGTGT+AGG | 0.451063 | 4_3:-56063779 | Msa0649420:CDS |
| ATTCGAAGAATCCAAGTGAT+TGG | 0.456518 | 4_3:-56063956 | Msa0649420:CDS |
| AACAAACTAGAAGCAGATTC+AGG | 0.459461 | 4_3:+56065504 | None:intergenic |
| TGCAAATTATGCCAATCACT+TGG | 0.462899 | 4_3:+56063945 | None:intergenic |
| AGTTGTTGTTTCCTAAGAGT+TGG | 0.465002 | 4_3:+56065930 | None:intergenic |
| CTCCCAGACAAGAATAATAA+GGG | 0.473299 | 4_3:-56065453 | Msa0649420:intron |
| GTGAGGAGTTGATGAGGGAA+GGG | 0.473696 | 4_3:+56066115 | None:intergenic |
| TGAGTGTGTTATTTGGGGAG+TGG | 0.483253 | 4_3:+56066083 | None:intergenic |
| AAGCTTTGTTCCCAACTTGT+GGG | 0.484528 | 4_3:+56064132 | None:intergenic |
| AAAGCTTTGTTCCCAACTTG+TGG | 0.491555 | 4_3:+56064131 | None:intergenic |
| ACTCACTTTCACGTGAGAGT+TGG | 0.492991 | 4_3:-56065665 | Msa0649420:CDS |
| CCCAAACACAAATGCAGCAA+CGG | 0.494417 | 4_3:+56064157 | None:intergenic |
| AGTGTCACGTGCCGGCGTCA+TGG | 0.494975 | 4_3:-56063812 | Msa0649420:CDS |
| TTGTGTGGCGTGGTACTACT+AGG | 0.495241 | 4_3:-56065560 | Msa0649420:CDS |
| AGTTTGAGGTGAAGGTGAAG+AGG | 0.496715 | 4_3:-56063878 | Msa0649420:CDS |
| TATGGTGTGTAGGGAGGATG+GGG | 0.498795 | 4_3:-56063769 | Msa0649420:CDS |
| CTCACTCACTCACTTTAACA+TGG | 0.501665 | 4_3:-56066056 | Msa0649420:five_prime_UTR |
| CTGGAGTGGATTAACGTGTT+TGG | 0.501745 | 4_3:-56065534 | Msa0649420:CDS |
| GAGAGTCCCTAAAGTAATGA+AGG | 0.502197 | 4_3:-56064387 | Msa0649420:CDS |
| TGTGTAGGGAGGATGGGGAA+TGG | 0.502452 | 4_3:-56063764 | Msa0649420:CDS |
| GTATTTCATAAGCTATTGCC+TGG | 0.505272 | 4_3:-56063292 | Msa0649420:three_prime_UTR |
| GTATTTCATAAGCTATTGCC+TGG | 0.505272 | 4_3:-56063524 | Msa0649420:three_prime_UTR |
| GGATGAGGTTGCGGAGATTG+AGG | 0.506364 | 4_3:+56065882 | None:intergenic |
| TGTGTCTGTTGCCATGTCCA+AGG | 0.507555 | 4_3:+56066012 | None:intergenic |
| TGATGGGGAGTTTGAGGTGA+AGG | 0.510458 | 4_3:-56063886 | Msa0649420:CDS |
| CGATGAACGGAGTAGAGAGT+TGG | 0.517745 | 4_3:-56065601 | Msa0649420:CDS |
| TCCCTAAAGTAATGAAGGGT+TGG | 0.517931 | 4_3:-56064382 | Msa0649420:CDS |
| ATATTGTGGCTGGTTGGAAT+GGG | 0.519997 | 4_3:-56063911 | Msa0649420:CDS |
| GCAAGCTATGTTGCATATTG+TGG | 0.523056 | 4_3:-56063925 | Msa0649420:CDS |
| TGTGAGGAGTTGATGAGGGA+AGG | 0.524098 | 4_3:+56066114 | None:intergenic |
| GAATAAAGGTATGGTGTGTA+GGG | 0.527705 | 4_3:-56063778 | Msa0649420:CDS |
| CAACTCTCTACTCCGTTCAT+CGG | 0.527868 | 4_3:+56065602 | None:intergenic |
| CACAACGGAGGATGAGGTTG+CGG | 0.530460 | 4_3:+56065873 | None:intergenic |
| GACCGTGAGTCTAACTGGAT+TGG | 0.532608 | 4_3:-56065642 | Msa0649420:CDS |
| GCTATGTTGCATATTGTGGC+TGG | 0.532700 | 4_3:-56063921 | Msa0649420:CDS |
| TCATACCCCAATAACTTCCC+TGG | 0.532892 | 4_3:+56064032 | None:intergenic |
| TTGCGGAGATTGAGGTCTAG+TGG | 0.537408 | 4_3:+56065890 | None:intergenic |
| ATACACGTGAAGTAGCATAA+AGG | 0.538445 | 4_3:+56065712 | None:intergenic |
| GTCACGTGCCGGCGTCATGG+TGG | 0.539164 | 4_3:-56063809 | Msa0649420:CDS |
| TCCTTATAGGCTCACACCAA+AGG | 0.540120 | 4_3:+56063463 | None:intergenic |
| TGTTGCATATTGTGGCTGGT+TGG | 0.546285 | 4_3:-56063917 | Msa0649420:CDS |
| ACACAACAGTGTAGTGTGTA+GGG | 0.546335 | 4_3:+56065739 | None:intergenic |
| TGCGGAGATTGAGGTCTAGT+GGG | 0.547441 | 4_3:+56065891 | None:intergenic |
| CCTTATTATTCTTGTCTGGG+AGG | 0.547834 | 4_3:+56065454 | None:intergenic |
| GATGAACGGAGTAGAGAGTT+GGG | 0.549457 | 4_3:-56065600 | Msa0649420:CDS |
| ATGGGTTGATGCACCAGAGA+AGG | 0.557126 | 4_3:-56063745 | Msa0649420:CDS |
| TCACGTGCCGGCGTCATGGT+GGG | 0.557826 | 4_3:-56063808 | Msa0649420:CDS |
| GTGTTTGGGTCCCCACAAGT+TGG | 0.557854 | 4_3:-56064143 | Msa0649420:CDS |
| CGCAACCTCATCCTCCGTTG+TGG | 0.560178 | 4_3:-56065872 | Msa0649420:five_prime_UTR |
| AATACTCTTCAGGCACAGGC+AGG | 0.565284 | 4_3:+56063718 | None:intergenic |
| ATCTTATACCACATTATCCA+GGG | 0.566732 | 4_3:-56064049 | Msa0649420:CDS |
| TAAAGGTATGGTGTGTAGGG+AGG | 0.567589 | 4_3:-56063775 | Msa0649420:CDS |
| ATTATCCAGGGAAGTTATTG+GGG | 0.567947 | 4_3:-56064037 | Msa0649420:CDS |
| GTCGTTGTTAAAGGAGTCGT+AGG | 0.568720 | 4_3:+56065832 | None:intergenic |
| GTGTCTGTTGCCATGTCCAA+GGG | 0.573129 | 4_3:+56066013 | None:intergenic |
| TGTCCTACTAATACCACACT+TGG | 0.573233 | 4_3:+56064248 | None:intergenic |
| AGTCACCACAACGGAGGATG+AGG | 0.574935 | 4_3:+56065867 | None:intergenic |
| AATAACTTCCCTGGATAATG+TGG | 0.577975 | 4_3:+56064041 | None:intergenic |
| TATTGGGGTATGAGTATACT+GGG | 0.578108 | 4_3:-56064022 | Msa0649420:CDS |
| TATATTGTGAGGAGTTGATG+AGG | 0.578903 | 4_3:+56066109 | None:intergenic |
| TGAGTATACTGGGACAGAGT+TGG | 0.580146 | 4_3:-56064012 | Msa0649420:CDS |
| GGGAGTGGATATATATTGTG+AGG | 0.581036 | 4_3:+56066098 | None:intergenic |
| TCGCTGTTAGTTCCGATGAA+CGG | 0.581063 | 4_3:-56065614 | Msa0649420:CDS |
| AGCTTTGTTCCCAACTTGTG+GGG | 0.583051 | 4_3:+56064133 | None:intergenic |
| TGGTTGGAATGGGAGTGATG+GGG | 0.584414 | 4_3:-56063901 | Msa0649420:CDS |
| TCACTCACTCACTTTAACAT+GGG | 0.585219 | 4_3:-56066055 | Msa0649420:five_prime_UTR |
| GAAGGAAGAGTGTCACGTGC+CGG | 0.589437 | 4_3:-56063820 | Msa0649420:CDS |
| TGTTATACAGCATGGTAACA+TGG | 0.596633 | 4_3:+56063435 | None:intergenic |
| TGTTATACAGCATGGTAACA+TGG | 0.596633 | 4_3:+56063667 | None:intergenic |
| GTCGCAACCCACCATGACGC+CGG | 0.606178 | 4_3:+56063801 | None:intergenic |
| TGTTTACAAGCTCACACCAA+AGG | 0.608748 | 4_3:+56063231 | None:intergenic |
| AGTCAATACTCTTCAGGCAC+AGG | 0.610040 | 4_3:+56063714 | None:intergenic |
| GATGAGGGAAGGGAAGTTTG+TGG | 0.610090 | 4_3:+56066125 | None:intergenic |
| GGTTGATGCACCAGAGAAGG+AGG | 0.611115 | 4_3:-56063742 | Msa0649420:CDS |
| GGTTGCGACGAATAAAGGTA+TGG | 0.611496 | 4_3:-56063787 | Msa0649420:CDS |
| GCGTGGTACTACTAGGGACC+TGG | 0.616633 | 4_3:-56065553 | Msa0649420:CDS |
| GACACAACAGTGTAGTGTGT+AGG | 0.616775 | 4_3:+56065738 | None:intergenic |
| ATATTGTGAGGAGTTGATGA+GGG | 0.617780 | 4_3:+56066110 | None:intergenic |
| GCGGGTGAGTGTGTTATTTG+GGG | 0.618376 | 4_3:+56066078 | None:intergenic |
| AGAGTCCCTAAAGTAATGAA+GGG | 0.626570 | 4_3:-56064386 | Msa0649420:CDS |
| CAGTACAATGTTATACAGCA+TGG | 0.630286 | 4_3:+56063427 | None:intergenic |
| CAGTACAATGTTATACAGCA+TGG | 0.630286 | 4_3:+56063659 | None:intergenic |
| CAAACACGTTAATCCACTCC+AGG | 0.633191 | 4_3:+56065535 | None:intergenic |
| CAAGAATGAAAATCCAAGTG+TGG | 0.634400 | 4_3:-56064261 | Msa0649420:CDS |
| GTATTAGTAGGACATAGTCT+AGG | 0.639227 | 4_3:-56064239 | Msa0649420:CDS |
| TAGCAGCAGCAGTGACGATG+AGG | 0.641877 | 4_3:-56064417 | Msa0649420:CDS |
| ACTCTCAAAACTATAGAACC+AGG | 0.643970 | 4_3:+56063274 | None:intergenic |
| ACTCTCAAAACTATAGAACC+AGG | 0.643970 | 4_3:+56063506 | None:intergenic |
| TAGAGTAACAAACAAAACAA+AGG | 0.649926 | 4_3:+56063403 | None:intergenic |
| TAGAGTAACAAACAAAACAA+AGG | 0.649926 | 4_3:+56063635 | None:intergenic |
| GTCGTGAAATATATGTTGTG+TGG | 0.660451 | 4_3:-56065575 | Msa0649420:CDS |
| AACCAATCCAGTTAGACTCA+CGG | 0.662669 | 4_3:+56065640 | None:intergenic |
| GAAATATATGTTGTGTGGCG+TGG | 0.672854 | 4_3:-56065570 | Msa0649420:CDS |
| GTACTACTAGGGACCTGGAG+TGG | 0.677827 | 4_3:-56065548 | Msa0649420:CDS |
| TGTGTGGCGTGGTACTACTA+GGG | 0.683087 | 4_3:-56065559 | Msa0649420:CDS |
| GTTAAAGTGAGTGAGTGAGC+GGG | 0.699630 | 4_3:+56066060 | None:intergenic |
| TTTGTATGAAGTCACCACAA+CGG | 0.704168 | 4_3:+56065858 | None:intergenic |
| ACTCTTAGGAAACAACAACT+GGG | 0.710330 | 4_3:-56065927 | Msa0649420:five_prime_UTR |
| GACCAAAACTCTATCTACTG+CGG | 0.719453 | 4_3:-56065812 | Msa0649420:five_prime_UTR |
| TGTTAAAGTGAGTGAGTGAG+CGG | 0.719644 | 4_3:+56066059 | None:intergenic |
| GTATGAAGTCACCACAACGG+AGG | 0.734924 | 4_3:+56065861 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAACTTGATATTTATTTAA+GGG | + | chr4_3:56064468-56064487 | None:intergenic | 15.0% |
| !!! | AATCAAATTTTAAAACTGAT+GGG | + | chr4_3:56064630-56064649 | None:intergenic | 15.0% |
| !! | ATTAAATTATTCAGAGAAAA+GGG | + | chr4_3:56065890-56065909 | None:intergenic | 15.0% |
| !! | TATTAAATTATTCAGAGAAA+AGG | + | chr4_3:56065891-56065910 | None:intergenic | 15.0% |
| !! | ATTAAATTATTCAGAGAAAA+GGG | + | chr4_3:56065890-56065909 | None:intergenic | 15.0% |
| !! | TATTAAATTATTCAGAGAAA+AGG | + | chr4_3:56065891-56065910 | None:intergenic | 15.0% |
| !!! | ACTACTTTAAGAAAAAAGAT+AGG | - | chr4_3:56063237-56063256 | Msa0649420:three_prime_UTR | 20.0% |
| !! | GTTTATGTAAGATCTAAAAA+TGG | + | chr4_3:56064079-56064098 | None:intergenic | 20.0% |
| !! | GTAAATATAACTCATTAACA+TGG | - | chr4_3:56064340-56064359 | Msa0649420:CDS | 20.0% |
| !! | GGTAACTTGATATTTATTTA+AGG | + | chr4_3:56064469-56064488 | None:intergenic | 20.0% |
| !!! | ATAAAAATTTAACTGACTCT+AGG | - | chr4_3:56064538-56064557 | Msa0649420:intron | 20.0% |
| !!! | GAATCAAATTTTAAAACTGA+TGG | + | chr4_3:56064631-56064650 | None:intergenic | 20.0% |
| !! | CAAAAAGTTTCAAAATTTGA+AGG | - | chr4_3:56065369-56065388 | Msa0649420:intron | 20.0% |
| !!! | ATATTTTATAACCAAACCTT+TGG | - | chr4_3:56065986-56066005 | Msa0649420:five_prime_UTR | 20.0% |
| !!! | ATATTTTATAACCAAACCTT+TGG | - | chr4_3:56065986-56066005 | Msa0649420:five_prime_UTR | 20.0% |
| !! | TTTTTCTTAAAGTAGTGTGA+TGG | + | chr4_3:56063233-56063252 | None:intergenic | 25.0% |
| !! | ATTTCTCATCTCATTTCTTT+TGG | - | chr4_3:56063289-56063308 | Msa0649420:three_prime_UTR | 25.0% |
| !!! | GTTTCTTGGTTTATTTTTGT+TGG | + | chr4_3:56063509-56063528 | None:intergenic | 25.0% |
| ! | CAAAAATAAACCAAGAAACA+TGG | - | chr4_3:56063510-56063529 | Msa0649420:three_prime_UTR | 25.0% |
| ! | TGTAAGATCTAAAAATGGAT+AGG | + | chr4_3:56064074-56064093 | None:intergenic | 25.0% |
| ! | CATATATTTGTTCATATGCA+CGG | + | chr4_3:56064430-56064449 | None:intergenic | 25.0% |
| !!! | TTGCAGAGAATATTTTTTCA+AGG | + | chr4_3:56064490-56064509 | None:intergenic | 25.0% |
| ! | AAAAATATTCTCTGCAAATG+TGG | - | chr4_3:56064493-56064512 | Msa0649420:intron | 25.0% |
| ! | AAAATATTCTCTGCAAATGT+GGG | - | chr4_3:56064494-56064513 | Msa0649420:intron | 25.0% |
| ! | GTTAATTAAATGATGTCAAG+AGG | - | chr4_3:56064578-56064597 | Msa0649420:intron | 25.0% |
| !! | AAGAATTCCTTCTATTTTCT+GGG | + | chr4_3:56064754-56064773 | None:intergenic | 25.0% |
| ! | TGTCACATAGACTTTATAAA+TGG | + | chr4_3:56064943-56064962 | None:intergenic | 25.0% |
| ! | CGTTACATAGACTTTATAAA+TGG | + | chr4_3:56064984-56065003 | None:intergenic | 25.0% |
| !! | TTTTTGTGAAAGGAGATTTT+GGG | + | chr4_3:56065132-56065151 | None:intergenic | 25.0% |
| !! | TAACATGGATTATTCCTTAT+AGG | + | chr4_3:56065786-56065805 | None:intergenic | 25.0% |
| ! | TAGAGTAACAAACAAAACAA+AGG | + | chr4_3:56065833-56065852 | None:intergenic | 25.0% |
| !! | TAACATGGATTATTCCTTAT+AGG | + | chr4_3:56065786-56065805 | None:intergenic | 25.0% |
| ! | TAGAGTAACAAACAAAACAA+AGG | + | chr4_3:56065833-56065852 | None:intergenic | 25.0% |
| !!! | TTTATTTTTGTTGGTTGTGG+TGG | + | chr4_3:56063500-56063519 | None:intergenic | 30.0% |
| !!! | TGGTTTATTTTTGTTGGTTG+TGG | + | chr4_3:56063503-56063522 | None:intergenic | 30.0% |
| ! | AAGAATGAGTTTTGCCATAA+CGG | + | chr4_3:56063685-56063704 | None:intergenic | 30.0% |
| TACCCTTATTATTCTTGTCT+GGG | + | chr4_3:56064017-56064036 | None:intergenic | 30.0% | |
| AAACATACTTAAACCGAGTT+TGG | - | chr4_3:56064095-56064114 | Msa0649420:CDS | 30.0% | |
| AACATACTTAAACCGAGTTT+GGG | - | chr4_3:56064096-56064115 | Msa0649420:CDS | 30.0% | |
| TTGTATGAGATTTAGAAGCA+TGG | - | chr4_3:56064124-56064143 | Msa0649420:CDS | 30.0% | |
| ! | TTTAGAAGCATGGAATCTAT+AGG | - | chr4_3:56064134-56064153 | Msa0649420:CDS | 30.0% |
| GATTGAAACTCTGAACTAAA+AGG | + | chr4_3:56064401-56064420 | None:intergenic | 30.0% | |
| ! | CAAGAATTCCTTCTATTTTC+TGG | + | chr4_3:56064755-56064774 | None:intergenic | 30.0% |
| CAGAAAATAGAAGGAATTCT+TGG | - | chr4_3:56064753-56064772 | Msa0649420:intron | 30.0% | |
| ! | TGCTTTTATGCATAACTCTT+CGG | - | chr4_3:56064794-56064813 | Msa0649420:intron | 30.0% |
| AAAGTCTATGTGACATGTAT+TGG | - | chr4_3:56064948-56064967 | Msa0649420:intron | 30.0% | |
| ! | GTTTTTGTGAAAGGAGATTT+TGG | + | chr4_3:56065133-56065152 | None:intergenic | 30.0% |
| !! | AATTGTGAGTGCTTTTGATT+TGG | - | chr4_3:56065261-56065280 | Msa0649420:intron | 30.0% |
| ! | ATTTGAAGGTTTTACATGTG+AGG | - | chr4_3:56065383-56065402 | Msa0649420:intron | 30.0% |
| ATCTTATACCACATTATCCA+GGG | - | chr4_3:56065416-56065435 | Msa0649420:intron | 30.0% | |
| ! | TAAGTCTTGTGATTACTTGA+AGG | - | chr4_3:56065627-56065646 | Msa0649420:CDS | 30.0% |
| !! | ATATTGTGAGGAGTTGATGA+GGG | + | chr4_3:56063358-56063377 | None:intergenic | 35.0% |
| !! | TATATTGTGAGGAGTTGATG+AGG | + | chr4_3:56063359-56063378 | None:intergenic | 35.0% |
| TCACTCACTCACTTTAACAT+GGG | - | chr4_3:56063410-56063429 | Msa0649420:three_prime_UTR | 35.0% | |
| !! | AGTTGTTGTTTCCTAAGAGT+TGG | + | chr4_3:56063538-56063557 | None:intergenic | 35.0% |
| AACTCTTAGGAAACAACAAC+TGG | - | chr4_3:56063537-56063556 | Msa0649420:three_prime_UTR | 35.0% | |
| ACTCTTAGGAAACAACAACT+GGG | - | chr4_3:56063538-56063557 | Msa0649420:three_prime_UTR | 35.0% | |
| TTTGTATGAAGTCACCACAA+CGG | + | chr4_3:56063610-56063629 | None:intergenic | 35.0% | |
| !! | AGAGTTTTGGTCGTTGTTAA+AGG | + | chr4_3:56063645-56063664 | None:intergenic | 35.0% |
| ATACACGTGAAGTAGCATAA+AGG | + | chr4_3:56063756-56063775 | None:intergenic | 35.0% | |
| GAGTGAAGAATAAAAGCTTC+AGG | + | chr4_3:56063784-56063803 | None:intergenic | 35.0% | |
| GTCGTGAAATATATGTTGTG+TGG | - | chr4_3:56063890-56063909 | Msa0649420:CDS | 35.0% | |
| AACAAACTAGAAGCAGATTC+AGG | + | chr4_3:56063964-56063983 | None:intergenic | 35.0% | |
| CTCCCAGACAAGAATAATAA+GGG | - | chr4_3:56064012-56064031 | Msa0649420:CDS | 35.0% | |
| GTACCCTTATTATTCTTGTC+TGG | + | chr4_3:56064018-56064037 | None:intergenic | 35.0% | |
| ACATACTTAAACCGAGTTTG+GGG | - | chr4_3:56064097-56064116 | Msa0649420:CDS | 35.0% | |
| ATTAACATGGTGTGACAGAA+GGG | - | chr4_3:56064353-56064372 | Msa0649420:CDS | 35.0% | |
| TAGTTCAGAGTTTCAATCTC+TGG | - | chr4_3:56064403-56064422 | Msa0649420:CDS | 35.0% | |
| TTAAATGATGTCAAGAGGCA+TGG | - | chr4_3:56064583-56064602 | Msa0649420:intron | 35.0% | |
| TACTAGACTGACTACCATAT+TGG | - | chr4_3:56064689-56064708 | Msa0649420:intron | 35.0% | |
| TTCCAAACCCAGAAAATAGA+AGG | - | chr4_3:56064744-56064763 | Msa0649420:intron | 35.0% | |
| ! | TTCCTTCTATTTTCTGGGTT+TGG | + | chr4_3:56064749-56064768 | None:intergenic | 35.0% |
| ! | GAATTCTTGGATTTTGCCTT+GGG | - | chr4_3:56064766-56064785 | Msa0649420:intron | 35.0% |
| ! | AATTCTTGGATTTTGCCTTG+GGG | - | chr4_3:56064767-56064786 | Msa0649420:intron | 35.0% |
| ! | GCTTTTATGCATAACTCTTC+GGG | - | chr4_3:56064795-56064814 | Msa0649420:intron | 35.0% |
| TGCTAAATCATAGGCACATT+GGG | - | chr4_3:56064878-56064897 | Msa0649420:intron | 35.0% | |
| ! | CTATGTGACATGTATTGGTA+AGG | - | chr4_3:56064953-56064972 | Msa0649420:intron | 35.0% |
| AGAGTCCCTAAAGTAATGAA+GGG | - | chr4_3:56065079-56065098 | Msa0649420:intron | 35.0% | |
| CAAGAATGAAAATCCAAGTG+TGG | - | chr4_3:56065204-56065223 | Msa0649420:intron | 35.0% | |
| AATCCAAGTGTGGTATTAGT+AGG | - | chr4_3:56065214-56065233 | Msa0649420:intron | 35.0% | |
| GTATTAGTAGGACATAGTCT+AGG | - | chr4_3:56065226-56065245 | Msa0649420:intron | 35.0% | |
| GGAACAAAGCTTTCAATGAT+AGG | - | chr4_3:56065344-56065363 | Msa0649420:intron | 35.0% | |
| GATCTTATACCACATTATCC+AGG | - | chr4_3:56065415-56065434 | Msa0649420:intron | 35.0% | |
| AATAACTTCCCTGGATAATG+TGG | + | chr4_3:56065427-56065446 | None:intergenic | 35.0% | |
| ACATTATCCAGGGAAGTTAT+TGG | - | chr4_3:56065426-56065445 | Msa0649420:intron | 35.0% | |
| CATTATCCAGGGAAGTTATT+GGG | - | chr4_3:56065427-56065446 | Msa0649420:intron | 35.0% | |
| ATTATCCAGGGAAGTTATTG+GGG | - | chr4_3:56065428-56065447 | Msa0649420:intron | 35.0% | |
| TTATTGGGGTATGAGTATAC+TGG | - | chr4_3:56065442-56065461 | Msa0649420:intron | 35.0% | |
| TATTGGGGTATGAGTATACT+GGG | - | chr4_3:56065443-56065462 | Msa0649420:intron | 35.0% | |
| ATTCGAAGAATCCAAGTGAT+TGG | - | chr4_3:56065509-56065528 | Msa0649420:CDS | 35.0% | |
| TGCAAATTATGCCAATCACT+TGG | + | chr4_3:56065523-56065542 | None:intergenic | 35.0% | |
| ! | GAATAAAGGTATGGTGTGTA+GGG | - | chr4_3:56065687-56065706 | Msa0649420:CDS | 35.0% |
| ATACAGAGTCAATACTCTTC+AGG | + | chr4_3:56065760-56065779 | None:intergenic | 35.0% | |
| TGACTCTGTATATGCCTATA+AGG | - | chr4_3:56065769-56065788 | Msa0649420:exon | 35.0% | |
| TGTTATACAGCATGGTAACA+TGG | + | chr4_3:56065801-56065820 | None:intergenic | 35.0% | |
| CAGTACAATGTTATACAGCA+TGG | + | chr4_3:56065809-56065828 | None:intergenic | 35.0% | |
| GTATTTCATAAGCTATTGCC+TGG | - | chr4_3:56065941-56065960 | Msa0649420:five_prime_UTR | 35.0% | |
| ACTCTCAAAACTATAGAACC+AGG | + | chr4_3:56065962-56065981 | None:intergenic | 35.0% | |
| TGTTATACAGCATGGTAACA+TGG | + | chr4_3:56065801-56065820 | None:intergenic | 35.0% | |
| CAGTACAATGTTATACAGCA+TGG | + | chr4_3:56065809-56065828 | None:intergenic | 35.0% | |
| GTATTTCATAAGCTATTGCC+TGG | - | chr4_3:56065941-56065960 | Msa0649420:five_prime_UTR | 35.0% | |
| ACTCTCAAAACTATAGAACC+AGG | + | chr4_3:56065962-56065981 | None:intergenic | 35.0% | |
| GGGAGTGGATATATATTGTG+AGG | + | chr4_3:56063370-56063389 | None:intergenic | 40.0% | |
| TGTTAAAGTGAGTGAGTGAG+CGG | + | chr4_3:56063409-56063428 | None:intergenic | 40.0% | |
| CTCACTCACTCACTTTAACA+TGG | - | chr4_3:56063409-56063428 | Msa0649420:three_prime_UTR | 40.0% | |
| AGCACACAAAAAAACTCCCT+TGG | - | chr4_3:56063436-56063455 | Msa0649420:three_prime_UTR | 40.0% | |
| CAAAAAAACTCCCTTGGACA+TGG | - | chr4_3:56063442-56063461 | Msa0649420:three_prime_UTR | 40.0% | |
| !! | ATTTTTGTTGGTTGTGGTGG+TGG | + | chr4_3:56063497-56063516 | None:intergenic | 40.0% |
| ! | AGAGTTGGTTCCATGTTTCT+TGG | + | chr4_3:56063523-56063542 | None:intergenic | 40.0% |
| GAAACATGGAACCAACTCTT+AGG | - | chr4_3:56063524-56063543 | Msa0649420:three_prime_UTR | 40.0% | |
| GACCAAAACTCTATCTACTG+CGG | - | chr4_3:56063653-56063672 | Msa0649420:three_prime_UTR | 40.0% | |
| ! | AACCGCAGTAGATAGAGTTT+TGG | + | chr4_3:56063658-56063677 | None:intergenic | 40.0% |
| ACACAACAGTGTAGTGTGTA+GGG | + | chr4_3:56063729-56063748 | None:intergenic | 40.0% | |
| AACCAATCCAGTTAGACTCA+CGG | + | chr4_3:56063828-56063847 | None:intergenic | 40.0% | |
| GAAATATATGTTGTGTGGCG+TGG | - | chr4_3:56063895-56063914 | Msa0649420:CDS | 40.0% | |
| CCTTATTATTCTTGTCTGGG+AGG | + | chr4_3:56064014-56064033 | None:intergenic | 40.0% | |
| CCTCCCAGACAAGAATAATA+AGG | - | chr4_3:56064011-56064030 | Msa0649420:CDS | 40.0% | |
| CATACTTAAACCGAGTTTGG+GGG | - | chr4_3:56064098-56064117 | Msa0649420:CDS | 40.0% | |
| CATTAACATGGTGTGACAGA+AGG | - | chr4_3:56064352-56064371 | Msa0649420:CDS | 40.0% | |
| TTAACATGGTGTGACAGAAG+GGG | - | chr4_3:56064354-56064373 | Msa0649420:CDS | 40.0% | |
| ATGGCATGAGTTCACCAATA+TGG | + | chr4_3:56064706-56064725 | None:intergenic | 40.0% | |
| ! | GGAATTCTTGGATTTTGCCT+TGG | - | chr4_3:56064765-56064784 | Msa0649420:intron | 40.0% |
| GTGCTAAATCATAGGCACAT+TGG | - | chr4_3:56064877-56064896 | Msa0649420:intron | 40.0% | |
| GTGTCACATTCGCATCTATA+TGG | + | chr4_3:56064921-56064940 | None:intergenic | 40.0% | |
| GAGAGTCCCTAAAGTAATGA+AGG | - | chr4_3:56065078-56065097 | Msa0649420:intron | 40.0% | |
| TCCCTAAAGTAATGAAGGGT+TGG | - | chr4_3:56065083-56065102 | Msa0649420:intron | 40.0% | |
| GCCAACCCTTCATTACTTTA+GGG | + | chr4_3:56065087-56065106 | None:intergenic | 40.0% | |
| AGCCAACCCTTCATTACTTT+AGG | + | chr4_3:56065088-56065107 | None:intergenic | 40.0% | |
| !!! | CTGACGCTTGTTTTTGTGAA+AGG | + | chr4_3:56065142-56065161 | None:intergenic | 40.0% |
| AAAAACAAGCGTCAGAACAC+AGG | - | chr4_3:56065147-56065166 | Msa0649420:intron | 40.0% | |
| TGTCCTACTAATACCACACT+TGG | + | chr4_3:56065220-56065239 | None:intergenic | 40.0% | |
| !!! | TGTGAGTGCTTTTGATTTGG+TGG | - | chr4_3:56065264-56065283 | Msa0649420:intron | 40.0% |
| !!! | GCTTTTGATTTGGTGGAGAA+TGG | - | chr4_3:56065271-56065290 | Msa0649420:intron | 40.0% |
| !! | AAGCTTTGTTCCCAACTTGT+GGG | + | chr4_3:56065336-56065355 | None:intergenic | 40.0% |
| !! | AAAGCTTTGTTCCCAACTTG+TGG | + | chr4_3:56065337-56065356 | None:intergenic | 40.0% |
| GCAAGCTATGTTGCATATTG+TGG | - | chr4_3:56065540-56065559 | Msa0649420:CDS | 40.0% | |
| ! | ATATTGTGGCTGGTTGGAAT+GGG | - | chr4_3:56065554-56065573 | Msa0649420:CDS | 40.0% |
| ! | CGAATAAAGGTATGGTGTGT+AGG | - | chr4_3:56065686-56065705 | Msa0649420:CDS | 40.0% |
| TGTTTACAAGCTCACACCAA+AGG | + | chr4_3:56066237-56066256 | None:intergenic | 40.0% | |
| !! | TGAGTGTGTTATTTGGGGAG+TGG | + | chr4_3:56063385-56063404 | None:intergenic | 45.0% |
| !! | AGCGGGTGAGTGTGTTATTT+GGG | + | chr4_3:56063391-56063410 | None:intergenic | 45.0% |
| GTTAAAGTGAGTGAGTGAGC+GGG | + | chr4_3:56063408-56063427 | None:intergenic | 45.0% | |
| GTCGTTGTTAAAGGAGTCGT+AGG | + | chr4_3:56063636-56063655 | None:intergenic | 45.0% | |
| GACACAACAGTGTAGTGTGT+AGG | + | chr4_3:56063730-56063749 | None:intergenic | 45.0% | |
| ACTCACTTTCACGTGAGAGT+TGG | - | chr4_3:56063800-56063819 | Msa0649420:CDS | 45.0% | |
| CTCACTTTCACGTGAGAGTT+GGG | - | chr4_3:56063801-56063820 | Msa0649420:CDS | 45.0% | |
| TCGCTGTTAGTTCCGATGAA+CGG | - | chr4_3:56063851-56063870 | Msa0649420:CDS | 45.0% | |
| CAACTCTCTACTCCGTTCAT+CGG | + | chr4_3:56063866-56063885 | None:intergenic | 45.0% | |
| GATGAACGGAGTAGAGAGTT+GGG | - | chr4_3:56063865-56063884 | Msa0649420:CDS | 45.0% | |
| CAAACACGTTAATCCACTCC+AGG | + | chr4_3:56063933-56063952 | None:intergenic | 45.0% | |
| !! | CTGGAGTGGATTAACGTGTT+TGG | - | chr4_3:56063931-56063950 | Msa0649420:CDS | 45.0% |
| CATACAAACTCCCCCAAACT+CGG | + | chr4_3:56064111-56064130 | None:intergenic | 45.0% | |
| TGACAGAAGGGGTAGATGTT+TGG | - | chr4_3:56064365-56064384 | Msa0649420:CDS | 45.0% | |
| GACAGAAGGGGTAGATGTTT+GGG | - | chr4_3:56064366-56064385 | Msa0649420:CDS | 45.0% | |
| ATTGGTGAACTCATGCCATG+TGG | - | chr4_3:56064707-56064726 | Msa0649420:intron | 45.0% | |
| CTCATGCCATGTGGTGTATA+CGG | - | chr4_3:56064716-56064735 | Msa0649420:intron | 45.0% | |
| !! | AAAGTGCCGTATACACCACA+TGG | + | chr4_3:56064725-56064744 | None:intergenic | 45.0% |
| !! | GCATAAAAGCATTTGCCCCA+AGG | + | chr4_3:56064785-56064804 | None:intergenic | 45.0% |
| !! | CATAACTCTTCGGGTTGATC+TGG | - | chr4_3:56064804-56064823 | Msa0649420:intron | 45.0% |
| ACACTAGCTAATAGTCCTCC+TGG | - | chr4_3:56064855-56064874 | Msa0649420:intron | 45.0% | |
| ! | TCCTCCTGGTGCTAAATCAT+AGG | - | chr4_3:56064869-56064888 | Msa0649420:intron | 45.0% |
| TGTGCCTATGATTTAGCACC+AGG | + | chr4_3:56064876-56064895 | None:intergenic | 45.0% | |
| CCAAACACAAATGCAGCAAC+GGG | + | chr4_3:56065310-56065329 | None:intergenic | 45.0% | |
| CCCAAACACAAATGCAGCAA+CGG | + | chr4_3:56065311-56065330 | None:intergenic | 45.0% | |
| CCGTTGCTGCATTTGTGTTT+GGG | - | chr4_3:56065308-56065327 | Msa0649420:intron | 45.0% | |
| !! | AGCTTTGTTCCCAACTTGTG+GGG | + | chr4_3:56065335-56065354 | None:intergenic | 45.0% |
| TCATACCCCAATAACTTCCC+TGG | + | chr4_3:56065436-56065455 | None:intergenic | 45.0% | |
| TGAGTATACTGGGACAGAGT+TGG | - | chr4_3:56065453-56065472 | Msa0649420:intron | 45.0% | |
| GCTATGTTGCATATTGTGGC+TGG | - | chr4_3:56065544-56065563 | Msa0649420:CDS | 45.0% | |
| TGTTGCATATTGTGGCTGGT+TGG | - | chr4_3:56065548-56065567 | Msa0649420:CDS | 45.0% | |
| ! | CATATTGTGGCTGGTTGGAA+TGG | - | chr4_3:56065553-56065572 | Msa0649420:CDS | 45.0% |
| ! | AGTTTGAGGTGAAGGTGAAG+AGG | - | chr4_3:56065587-56065606 | Msa0649420:CDS | 45.0% |
| GGTTGCGACGAATAAAGGTA+TGG | - | chr4_3:56065678-56065697 | Msa0649420:CDS | 45.0% | |
| ! | TAAAGGTATGGTGTGTAGGG+AGG | - | chr4_3:56065690-56065709 | Msa0649420:CDS | 45.0% |
| AGTCAATACTCTTCAGGCAC+AGG | + | chr4_3:56065754-56065773 | None:intergenic | 45.0% | |
| ATAGGCTCACACCAAAGGTT+TGG | + | chr4_3:56066000-56066019 | None:intergenic | 45.0% | |
| ! | ACCTTTGGTGTGAGCCTATA+AGG | - | chr4_3:56066001-56066020 | Msa0649420:five_prime_UTR | 45.0% |
| TCCTTATAGGCTCACACCAA+AGG | + | chr4_3:56066005-56066024 | None:intergenic | 45.0% | |
| ACAAGCTCACACCAAAGGTT+TGG | + | chr4_3:56066232-56066251 | None:intergenic | 45.0% | |
| GATGAGGGAAGGGAAGTTTG+TGG | + | chr4_3:56063343-56063362 | None:intergenic | 50.0% | |
| !! | GTGAGGAGTTGATGAGGGAA+GGG | + | chr4_3:56063353-56063372 | None:intergenic | 50.0% |
| !! | TGTGAGGAGTTGATGAGGGA+AGG | + | chr4_3:56063354-56063373 | None:intergenic | 50.0% |
| !! | GCGGGTGAGTGTGTTATTTG+GGG | + | chr4_3:56063390-56063409 | None:intergenic | 50.0% |
| ! | GAGCGGGTGAGTGTGTTATT+TGG | + | chr4_3:56063392-56063411 | None:intergenic | 50.0% |
| GTGTCTGTTGCCATGTCCAA+GGG | + | chr4_3:56063455-56063474 | None:intergenic | 50.0% | |
| TGTGTCTGTTGCCATGTCCA+AGG | + | chr4_3:56063456-56063475 | None:intergenic | 50.0% | |
| TGCGGAGATTGAGGTCTAGT+GGG | + | chr4_3:56063577-56063596 | None:intergenic | 50.0% | |
| TTGCGGAGATTGAGGTCTAG+TGG | + | chr4_3:56063578-56063597 | None:intergenic | 50.0% | |
| GTATGAAGTCACCACAACGG+AGG | + | chr4_3:56063607-56063626 | None:intergenic | 50.0% | |
| TACTGCGGTTCAAGCCGTTA+TGG | - | chr4_3:56063668-56063687 | Msa0649420:three_prime_UTR | 50.0% | |
| GACCGTGAGTCTAACTGGAT+TGG | - | chr4_3:56063823-56063842 | Msa0649420:CDS | 50.0% | |
| CGATGAACGGAGTAGAGAGT+TGG | - | chr4_3:56063864-56063883 | Msa0649420:CDS | 50.0% | |
| TTGTGTGGCGTGGTACTACT+AGG | - | chr4_3:56063905-56063924 | Msa0649420:CDS | 50.0% | |
| TGTGTGGCGTGGTACTACTA+GGG | - | chr4_3:56063906-56063925 | Msa0649420:CDS | 50.0% | |
| ! | TGATGTCAAGAGGCATGGCT+AGG | - | chr4_3:56064588-56064607 | Msa0649420:intron | 50.0% |
| ! | AAGAGGCATGGCTAGGATGA+TGG | - | chr4_3:56064595-56064614 | Msa0649420:intron | 50.0% |
| GCCTATGATTTAGCACCAGG+AGG | + | chr4_3:56064873-56064892 | None:intergenic | 50.0% | |
| !! | AGGAGATTTTGGGTCGTCTG+AGG | + | chr4_3:56065122-56065141 | None:intergenic | 50.0% |
| CCCGTTGCTGCATTTGTGTT+TGG | - | chr4_3:56065307-56065326 | Msa0649420:intron | 50.0% | |
| TGTTTGGGTCCCCACAAGTT+GGG | - | chr4_3:56065323-56065342 | Msa0649420:intron | 50.0% | |
| CTGGTTGGAATGGGAGTGAT+GGG | - | chr4_3:56065563-56065582 | Msa0649420:CDS | 50.0% | |
| TGGTTGGAATGGGAGTGATG+GGG | - | chr4_3:56065564-56065583 | Msa0649420:CDS | 50.0% | |
| ! | TGATGGGGAGTTTGAGGTGA+AGG | - | chr4_3:56065579-56065598 | Msa0649420:CDS | 50.0% |
| GGTGAAGGTGAAGAGGAGTT+TGG | - | chr4_3:56065594-56065613 | Msa0649420:CDS | 50.0% | |
| !! | TGGTGGGTTGCGACGAATAA+AGG | - | chr4_3:56065673-56065692 | Msa0649420:CDS | 50.0% |
| GTATGGTGTGTAGGGAGGAT+GGG | - | chr4_3:56065695-56065714 | Msa0649420:CDS | 50.0% | |
| TATGGTGTGTAGGGAGGATG+GGG | - | chr4_3:56065696-56065715 | Msa0649420:CDS | 50.0% | |
| !! | ATGGGTTGATGCACCAGAGA+AGG | - | chr4_3:56065720-56065739 | Msa0649420:CDS | 50.0% |
| AATACTCTTCAGGCACAGGC+AGG | + | chr4_3:56065750-56065769 | None:intergenic | 50.0% | |
| GGATGAGGTTGCGGAGATTG+AGG | + | chr4_3:56063586-56063605 | None:intergenic | 55.0% | |
| CACAACGGAGGATGAGGTTG+CGG | + | chr4_3:56063595-56063614 | None:intergenic | 55.0% | |
| AGTCACCACAACGGAGGATG+AGG | + | chr4_3:56063601-56063620 | None:intergenic | 55.0% | |
| GTTGGGACCGTGAGTCTAAC+TGG | - | chr4_3:56063818-56063837 | Msa0649420:CDS | 55.0% | |
| GTACTACTAGGGACCTGGAG+TGG | - | chr4_3:56063917-56063936 | Msa0649420:CDS | 55.0% | |
| ! | AGGCATGGCTAGGATGATGG+TGG | - | chr4_3:56064598-56064617 | Msa0649420:intron | 55.0% |
| ! | GGCATGGCTAGGATGATGGT+GGG | - | chr4_3:56064599-56064618 | Msa0649420:intron | 55.0% |
| ! | GCATGGCTAGGATGATGGTG+GGG | - | chr4_3:56064600-56064619 | Msa0649420:intron | 55.0% |
| TAGCAGCAGCAGTGACGATG+AGG | - | chr4_3:56065048-56065067 | Msa0649420:intron | 55.0% | |
| GTGTTTGGGTCCCCACAAGT+TGG | - | chr4_3:56065322-56065341 | Msa0649420:intron | 55.0% | |
| GCTGGTTGGAATGGGAGTGA+TGG | - | chr4_3:56065562-56065581 | Msa0649420:CDS | 55.0% | |
| ! | TGGGAGTGATGGGGAGTTTG+AGG | - | chr4_3:56065573-56065592 | Msa0649420:CDS | 55.0% |
| !! | GAAGGAAGAGTGTCACGTGC+CGG | - | chr4_3:56065645-56065664 | Msa0649420:CDS | 55.0% |
| GGTATGGTGTGTAGGGAGGA+TGG | - | chr4_3:56065694-56065713 | Msa0649420:CDS | 55.0% | |
| TGTGTAGGGAGGATGGGGAA+TGG | - | chr4_3:56065701-56065720 | Msa0649420:CDS | 55.0% | |
| GTGTAGGGAGGATGGGGAAT+GGG | - | chr4_3:56065702-56065721 | Msa0649420:CDS | 55.0% | |
| ! | GGTTGATGCACCAGAGAAGG+AGG | - | chr4_3:56065723-56065742 | Msa0649420:CDS | 55.0% |
| CGCAACCTCATCCTCCGTTG+TGG | - | chr4_3:56063593-56063612 | Msa0649420:three_prime_UTR | 60.0% | |
| GCGTGGTACTACTAGGGACC+TGG | - | chr4_3:56063912-56063931 | Msa0649420:CDS | 60.0% | |
| ACAGGCAGGTCCTCCTTCTC+TGG | + | chr4_3:56065736-56065755 | None:intergenic | 60.0% | |
| ! | AGTGTCACGTGCCGGCGTCA+TGG | - | chr4_3:56065653-56065672 | Msa0649420:CDS | 65.0% |
| ! | TCACGTGCCGGCGTCATGGT+GGG | - | chr4_3:56065657-56065676 | Msa0649420:CDS | 65.0% |
| GTCGCAACCCACCATGACGC+CGG | + | chr4_3:56065667-56065686 | None:intergenic | 65.0% | |
| ! | GTCACGTGCCGGCGTCATGG+TGG | - | chr4_3:56065656-56065675 | Msa0649420:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 56063230 | 56066257 | 56063230 | ID=Msa0649420;Name=Msa0649420 |
| chr4_3 | mRNA | 56063230 | 56066257 | 56063230 | ID=Msa0649420-mRNA-1;Parent=Msa0649420;Name=Msa0649420-mRNA-1;_AED=0.00;_eAED=0.00;_QI=485|1|1|1|1|1|2|486|349 |
| chr4_3 | exon | 56063230 | 56064446 | 56063230 | ID=Msa0649420-mRNA-1:exon:14496;Parent=Msa0649420-mRNA-1 |
| chr4_3 | exon | 56065454 | 56066257 | 56065454 | ID=Msa0649420-mRNA-1:exon:14495;Parent=Msa0649420-mRNA-1 |
| chr4_3 | five_prime_UTR | 56065773 | 56066257 | 56065773 | ID=Msa0649420-mRNA-1:five_prime_utr;Parent=Msa0649420-mRNA-1 |
| chr4_3 | CDS | 56065454 | 56065772 | 56065454 | ID=Msa0649420-mRNA-1:cds;Parent=Msa0649420-mRNA-1 |
| chr4_3 | CDS | 56063716 | 56064446 | 56063716 | ID=Msa0649420-mRNA-1:cds;Parent=Msa0649420-mRNA-1 |
| chr4_3 | three_prime_UTR | 56063230 | 56063715 | 56063230 | ID=Msa0649420-mRNA-1:three_prime_utr;Parent=Msa0649420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
