AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1439120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1439120 MtrunA17_Chr1g0209861 96.101 436 17 0 1 436 1 436 0.0 855
Msa1439120 MtrunA17_Chr8g0390971 41.150 452 189 18 9 433 11 412 9.89e-82 258
Msa1439120 MtrunA17_Chr5g0431351 44.144 111 42 3 316 424 124 216 4.72e-19 85.5
Msa1439120 MtrunA17_Chr7g0226451 40.152 132 56 4 316 424 220 351 4.80e-17 82.0
Msa1439120 MtrunA17_Chr4g0071811 46.154 104 44 4 321 424 293 384 5.41e-17 82.4
Msa1439120 MtrunA17_Chr1g0150471 47.561 82 36 2 351 427 221 300 1.97e-12 67.8
Msa1439120 MtrunA17_Chr3g0136701 63.636 55 16 1 370 424 224 274 3.48e-12 67.0
Msa1439120 MtrunA17_Chr7g0220721 69.767 43 13 0 382 424 327 369 7.59e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1439120 AT1G25440.1 45.392 434 189 10 6 424 3 403 2.59e-102 311
Msa1439120 AT1G68520.1 43.341 443 191 15 6 429 3 404 9.23e-91 281
Msa1439120 AT1G73870.1 38.149 443 190 19 8 427 9 390 7.95e-65 213
Msa1439120 AT4G25990.1 49.533 107 38 3 318 424 293 383 9.43e-22 97.1
Msa1439120 AT5G57180.2 45.217 115 43 3 318 431 337 432 3.03e-21 95.9
Msa1439120 AT1G49130.1 40.164 122 65 3 15 128 23 144 4.05e-19 88.2
Msa1439120 AT1G49130.1 45.794 107 37 3 319 425 236 321 7.43e-17 81.6
Msa1439120 AT1G49130.2 40.164 122 65 3 15 128 16 137 4.27e-19 88.2
Msa1439120 AT1G49130.2 45.794 107 37 3 319 425 229 314 1.00e-16 81.3
Msa1439120 AT4G25990.2 43.443 122 38 4 318 424 293 398 2.83e-18 87.0
Msa1439120 AT5G14370.1 38.028 142 73 4 291 424 202 336 4.98e-18 85.5
Msa1439120 AT4G25990.3 47.525 101 37 3 318 418 293 377 5.25e-18 85.9
Msa1439120 AT1G07050.1 43.750 128 45 5 303 426 91 195 2.08e-17 80.5
Msa1439120 AT5G57180.1 45.098 102 36 3 318 418 337 419 7.98e-17 82.4
Msa1439120 AT1G07050.2 41.667 120 43 5 303 418 91 187 5.12e-13 68.2
Msa1439120 AT5G24930.1 52.113 71 28 1 360 424 267 337 1.27e-11 66.2

Find 106 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGGTGTTCTTGCCTTCT+TGG 0.140899 tig0028713:-5069 None:intergenic
GAAGAATTCATCACCATTAA+TGG 0.149936 tig0028713:-5021 None:intergenic
ACAAATCTCCCTTTCATTCT+TGG 0.172964 tig0028713:-6938 None:intergenic
ATTATTTATCAGGGAACTTT+TGG 0.202916 tig0028713:+6746 Msa1439120:intron
TGAAAATAATGATTATAATA+AGG 0.203891 tig0028713:+5727 Msa1439120:CDS
TGAACTTTGAAATATGAATT+TGG 0.207298 tig0028713:-4743 None:intergenic
TTCTCATCAGCATCCAAATT+TGG 0.222169 tig0028713:-5839 None:intergenic
ATTTGCTAAAAGTAATAATT+TGG 0.227746 tig0028713:+7058 Msa1439120:three_prime_UTR
TTTCATCTTGTGCCGGATTT+AGG 0.234999 tig0028713:+5158 Msa1439120:CDS
TGGTTTGAGTGAAACTTTAT+TGG 0.235328 tig0028713:+7149 Msa1439120:three_prime_UTR
TTGTTAACACCTGACAAATT+AGG 0.244804 tig0028713:-4707 None:intergenic
TATGGTGAGTTTGGTGGATA+TGG 0.250845 tig0028713:+6788 Msa1439120:CDS
ATGAAGCGCAACTTCTTTAC+AGG 0.254107 tig0028713:+5216 Msa1439120:CDS
TAATGGTGACAAGCCAAATT+TGG 0.271510 tig0028713:+5826 Msa1439120:CDS
CTGCCTCCATCTACCGTTAC+TGG 0.277791 tig0028713:-6818 None:intergenic
GAAAATAATGATTATAATAA+GGG 0.279237 tig0028713:+5728 Msa1439120:CDS
GCGTCGTACAAGTCCATTAA+TGG 0.290118 tig0028713:+5008 Msa1439120:CDS
ACGGAGGTTCATTATGCTTA+TGG 0.290853 tig0028713:+6770 Msa1439120:CDS
CTCAACATCAGCTGCAAATT+CGG 0.302034 tig0028713:-5450 None:intergenic
GCAACAGAAGGATCGAAAAT+TGG 0.331767 tig0028713:-5242 None:intergenic
CATTATGCTTATGGTGAGTT+TGG 0.336402 tig0028713:+6779 Msa1439120:CDS
TTCTTGGTGAAGCCAGAAAA+AGG 0.344434 tig0028713:-5053 None:intergenic
GGTTGTTCTCAAAGAAAATA+AGG 0.347288 tig0028713:+6882 Msa1439120:CDS
TTCCCTTCACCTAATTTGTC+AGG 0.352541 tig0028713:+4698 Msa1439120:five_prime_UTR
GATTAGAAAATGAGTGTATA+GGG 0.361641 tig0028713:+5489 Msa1439120:CDS
CATTAGTCCAGGGACACTTT+TGG 0.361781 tig0028713:-5808 None:intergenic
AGCTGATGTTGAGAGCTTAT+TGG 0.374691 tig0028713:+5460 Msa1439120:CDS
AGAAAATAAGGTACGAGGTT+AGG 0.382846 tig0028713:+6894 Msa1439120:CDS
GGATTAGAAAATGAGTGTAT+AGG 0.385257 tig0028713:+5488 Msa1439120:CDS
GCTGATGTTGAGAGCTTATT+GGG 0.387062 tig0028713:+5461 Msa1439120:CDS
CAAAAGTGTCCCTGGACTAA+TGG 0.395385 tig0028713:+5809 Msa1439120:CDS
ATTCCTCGCTGGTTCGCTGC+TGG 0.398768 tig0028713:-5120 None:intergenic
TGTCATCCAGTAACGGTAGA+TGG 0.408098 tig0028713:+6812 Msa1439120:CDS
CTCTCATTGTATTTAACATC+AGG 0.418189 tig0028713:-5344 None:intergenic
GGAGATAATATGATGGAGAT+TGG 0.419606 tig0028713:+5617 Msa1439120:CDS
GAAGGCAAGAACACCAAGAC+AGG 0.424009 tig0028713:+5073 Msa1439120:CDS
TAGGGAGAGGAAAAGGGAAA+AGG 0.427942 tig0028713:-4664 None:intergenic
GCAGAGAGGCAAGGGTTTCA+AGG 0.431755 tig0028713:+6837 Msa1439120:CDS
TGTATAGGGATGGAAGAGTT+GGG 0.440723 tig0028713:+5503 Msa1439120:CDS
ATAAATTATACCATGCAATC+AGG 0.445629 tig0028713:-5866 None:intergenic
GATTTGTGTTTCCCCTGTCT+TGG 0.455579 tig0028713:-5086 None:intergenic
TGAAAGGGAGATTTGTGAAG+AGG 0.460030 tig0028713:+6945 Msa1439120:CDS
ATTTGGATGCTGATGAGAAC+TGG 0.465263 tig0028713:+5843 Msa1439120:CDS
GTGTATAGGGATGGAAGAGT+TGG 0.474392 tig0028713:+5502 Msa1439120:CDS
TGGCTTGTCACCATTAGTCC+AGG 0.479305 tig0028713:-5819 None:intergenic
AAATCCGGCACAAGATGAAA+CGG 0.483022 tig0028713:-5155 None:intergenic
AGTGAGAAGTGGAAGTGTAG+TGG 0.486251 tig0028713:+5551 Msa1439120:CDS
CCTTCAGTTGGTTCAACTGA+AGG 0.490709 tig0028713:+5284 Msa1439120:CDS
GTTGAGAGCTTATTGGGTAG+GGG 0.493508 tig0028713:+5467 Msa1439120:CDS
TGTACTAGTCCTCCTTCAGT+TGG 0.493939 tig0028713:+5272 Msa1439120:CDS
CTGTTGGAGGCAAAACTGCT+AGG 0.494037 tig0028713:+4847 Msa1439120:CDS
AGTGGAAAGGTGAAGGAAGA+AGG 0.494618 tig0028713:+5569 Msa1439120:CDS
TGTTGAGAGCTTATTGGGTA+GGG 0.498854 tig0028713:+5466 Msa1439120:CDS
TATGCTTATGGTGAGTTTGG+TGG 0.509644 tig0028713:+6782 Msa1439120:CDS
AGAGAGCTATGAAATTGTTG+AGG 0.512413 tig0028713:+5595 Msa1439120:CDS
AGATGGAGGCAGAGAGGCAA+GGG 0.513332 tig0028713:+6829 Msa1439120:CDS
GAAAGGGAGATTTGTGAAGA+GGG 0.514753 tig0028713:+6946 Msa1439120:CDS
GAGAAGAGACCAAGAATGAA+AGG 0.514881 tig0028713:+6929 Msa1439120:CDS
ATATTATTATTATTCCTCGC+TGG 0.519712 tig0028713:-5131 None:intergenic
GAGAGCTATGAAATTGTTGA+GGG 0.520749 tig0028713:+5596 Msa1439120:CDS
GGGATAGCCAAAAGTGTCCC+TGG 0.521182 tig0028713:+5801 Msa1439120:CDS
AATCCGGCACAAGATGAAAC+GGG 0.522679 tig0028713:-5154 None:intergenic
ATGTTGAGAGCTTATTGGGT+AGG 0.523810 tig0028713:+5465 Msa1439120:CDS
GGTTCAACTGAAGGAGGACT+AGG 0.524616 tig0028713:+5293 Msa1439120:CDS
ACTTCATCGAAACCTAAATC+CGG 0.535576 tig0028713:-5170 None:intergenic
CACCTGACAAATTAGGTGAA+GGG 0.550785 tig0028713:-4700 None:intergenic
TGAAACACTTGAAGAGGTGA+AGG 0.552820 tig0028713:+5685 Msa1439120:CDS
AACGTAGCAAACGCTGTTGG+AGG 0.555203 tig0028713:+4834 Msa1439120:CDS
GAAGAGGTGAAGGAGAAGTG+TGG 0.556028 tig0028713:+5695 Msa1439120:CDS
CCTCGCTGGTTCGCTGCTGG+AGG 0.557584 tig0028713:-5117 None:intergenic
TTCTCATGAAACACTTGAAG+AGG 0.559028 tig0028713:+5679 Msa1439120:CDS
ATGATGCAGTAATCATTGCA+TGG 0.567325 tig0028713:+5780 Msa1439120:CDS
TCGGCTAATTCAATATCAGA+TGG 0.569236 tig0028713:-5431 None:intergenic
AGAAGAGACCAAGAATGAAA+GGG 0.570209 tig0028713:+6930 Msa1439120:CDS
GAAGTGTAGTGGAAAGGTGA+AGG 0.573136 tig0028713:+5562 Msa1439120:CDS
TGATGCAGTAATCATTGCAT+GGG 0.576146 tig0028713:+5781 Msa1439120:CDS
AGCATGAGGAGAGTGAGAAG+TGG 0.578354 tig0028713:+5540 Msa1439120:CDS
TAGATGGAGGCAGAGAGGCA+AGG 0.578587 tig0028713:+6828 Msa1439120:CDS
GGCTTGTCACCATTAGTCCA+GGG 0.579867 tig0028713:-5818 None:intergenic
TGTTGAGGGAGATAATATGA+TGG 0.580179 tig0028713:+5610 Msa1439120:CDS
AAAATAATGATTATAATAAG+GGG 0.580910 tig0028713:+5729 Msa1439120:CDS
TGTTGGAGGCAAAACTGCTA+GGG 0.581207 tig0028713:+4848 Msa1439120:CDS
TATCCCGTTTCATCTTGTGC+CGG 0.584262 tig0028713:+5151 Msa1439120:CDS
TCAGTTGGTTCAACTGAAGG+AGG 0.585447 tig0028713:+5287 Msa1439120:CDS
ACACCTGACAAATTAGGTGA+AGG 0.585651 tig0028713:-4701 None:intergenic
AGAAAATGAGTGTATAGGGA+TGG 0.586862 tig0028713:+5493 Msa1439120:CDS
GGTGATGAATTCTTCAATTG+TGG 0.591451 tig0028713:+5029 Msa1439120:CDS
AGGAAATGTTGGAACTGCAA+AGG 0.601959 tig0028713:-6972 None:intergenic
CCTTCAGTTGAACCAACTGA+AGG 0.603328 tig0028713:-5284 None:intergenic
TGAGAACTGGCCTGATTGCA+TGG 0.605682 tig0028713:+5856 Msa1439120:CDS
TCAGTTGAACCAACTGAAGG+AGG 0.611596 tig0028713:-5281 None:intergenic
ATTGATTGATACAAAGCATG+AGG 0.625826 tig0028713:+5526 Msa1439120:CDS
TAGTGATAATAATTATGAGA+TGG 0.628845 tig0028713:+5388 Msa1439120:CDS
TGAAGCGCAACTTCTTTACA+GGG 0.630911 tig0028713:+5217 Msa1439120:CDS
GTACATAATTCAGCAACAGA+AGG 0.631423 tig0028713:-5254 None:intergenic
CTCAAAGAAAATAAGGTACG+AGG 0.632554 tig0028713:+6889 Msa1439120:CDS
AACGGTAGATGGAGGCAGAG+AGG 0.643178 tig0028713:+6823 Msa1439120:CDS
ACAGAGAAAAGCGAAGAACA+AGG 0.643427 tig0028713:+6861 Msa1439120:CDS
AGGCAAGAACACCAAGACAG+GGG 0.648532 tig0028713:+5075 Msa1439120:CDS
GAAGTGGAAGTGTAGTGGAA+AGG 0.652932 tig0028713:+5556 Msa1439120:CDS
AAGGCAAGAACACCAAGACA+GGG 0.653824 tig0028713:+5074 Msa1439120:CDS
ATATGGATGTCATCCAGTAA+CGG 0.662808 tig0028713:+6805 Msa1439120:CDS
AACTGAAGGAGGACTAGGAG+CGG 0.667542 tig0028713:+5298 Msa1439120:CDS
CATCCAGTAACGGTAGATGG+AGG 0.676181 tig0028713:+6815 Msa1439120:CDS
CCTCCAGCAGCGAACCAGCG+AGG 0.699815 tig0028713:+5117 Msa1439120:CDS
GCATAACAAAGAGAGCACGT+TGG 0.749325 tig0028713:+4883 Msa1439120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAATAATGATTATAATA+AGG + tig0028713:5727-5746 Msa1439120:CDS 10.0%
!! GAAAATAATGATTATAATAA+GGG + tig0028713:5728-5747 Msa1439120:CDS 10.0%
!! AAAATAATGATTATAATAAG+GGG + tig0028713:5729-5748 Msa1439120:CDS 10.0%
!! AAAATATCTAAATGTATATT+TGG - tig0028713:6016-6035 None:intergenic 10.0%
!!! TATATCTTAATTTTTCTTCA+TGG + tig0028713:5886-5905 Msa1439120:intron 15.0%
!! TAAACAAAATGATTTATGTT+TGG + tig0028713:6348-6367 Msa1439120:intron 15.0%
!! AATACTAACAAAAAAGATTA+GGG - tig0028713:7041-7060 None:intergenic 15.0%
!! AAATACTAACAAAAAAGATT+AGG - tig0028713:7042-7061 None:intergenic 15.0%
!!! ATTTGCTAAAAGTAATAATT+TGG + tig0028713:7058-7077 Msa1439120:three_prime_UTR 15.0%
!!! AACTTTTATATATACAAAGT+GGG - tig0028713:7120-7139 None:intergenic 15.0%
!!! AAACTTTTATATATACAAAG+TGG - tig0028713:7121-7140 None:intergenic 15.0%
!!! AAGGGAATACAATTATTTTA+GGG - tig0028713:4685-4704 None:intergenic 20.0%
!!! TGAACTTTGAAATATGAATT+TGG - tig0028713:4746-4765 None:intergenic 20.0%
!! TAGTGATAATAATTATGAGA+TGG + tig0028713:5388-5407 Msa1439120:CDS 20.0%
!!! TTTTACTGTTAGATTAATCA+TGG + tig0028713:6177-6196 Msa1439120:intron 20.0%
!! AATTTGATAGAAAGAAAAAG+TGG - tig0028713:6203-6222 None:intergenic 20.0%
!! TAAAGAATGAGAATTGATAA+AGG + tig0028713:6438-6457 Msa1439120:intron 20.0%
!! AAAGAATGAGAATTGATAAA+GGG + tig0028713:6439-6458 Msa1439120:intron 20.0%
!! ATACTAACAAAAAAGATTAG+GGG - tig0028713:7040-7059 None:intergenic 20.0%
!!! ATATAAAAGTTTTGTGCAAT+TGG + tig0028713:7129-7148 Msa1439120:three_prime_UTR 20.0%
!!! AATACAATTATTTTAGGGAG+AGG - tig0028713:4680-4699 None:intergenic 25.0%
!! GAAGGGAATACAATTATTTT+AGG - tig0028713:4686-4705 None:intergenic 25.0%
! ATATTATTATTATTCCTCGC+TGG - tig0028713:5134-5153 None:intergenic 25.0%
! GATTAGAAAATGAGTGTATA+GGG + tig0028713:5489-5508 Msa1439120:CDS 25.0%
! ATAAATTATACCATGCAATC+AGG - tig0028713:5869-5888 None:intergenic 25.0%
! GATACCAATCATTAACTAAA+GGG - tig0028713:5937-5956 None:intergenic 25.0%
! TGATACCAATCATTAACTAA+AGG - tig0028713:5938-5957 None:intergenic 25.0%
!! CTATCAAATTTTATGTCGTT+TGG + tig0028713:6213-6232 Msa1439120:intron 25.0%
!! TGAGAGAATTGATTTATGTT+TGG + tig0028713:6304-6323 Msa1439120:intron 25.0%
! ACTAAAATAGACATAGCTAA+AGG + tig0028713:6407-6426 Msa1439120:intron 25.0%
! TTTACAACATCACCTTTATA+GGG - tig0028713:6698-6717 None:intergenic 25.0%
! ATTTACAACATCACCTTTAT+AGG - tig0028713:6699-6718 None:intergenic 25.0%
!! ATTATTTATCAGGGAACTTT+TGG + tig0028713:6746-6765 Msa1439120:intron 25.0%
!!! TATTTTAGCAAAGGAAATGT+TGG - tig0028713:6986-7005 None:intergenic 25.0%
!!! GCTCTTATTTATTTTAGCAA+AGG - tig0028713:6995-7014 None:intergenic 25.0%
!!! TTATTTTAGGGAGAGGAAAA+GGG - tig0028713:4673-4692 None:intergenic 30.0%
!!! ATTATTTTAGGGAGAGGAAA+AGG - tig0028713:4674-4693 None:intergenic 30.0%
TTGTTAACACCTGACAAATT+AGG - tig0028713:4710-4729 None:intergenic 30.0%
!!! TTGAAGCTATACGTGTTTTT+TGG - tig0028713:4771-4790 None:intergenic 30.0%
GAAGAATTCATCACCATTAA+TGG - tig0028713:5024-5043 None:intergenic 30.0%
CTCTCATTGTATTTAACATC+AGG - tig0028713:5347-5366 None:intergenic 30.0%
GGATTAGAAAATGAGTGTAT+AGG + tig0028713:5488-5507 Msa1439120:CDS 30.0%
ATTGATTGATACAAAGCATG+AGG + tig0028713:5526-5545 Msa1439120:CDS 30.0%
CAATCCCTTTAGTTAATGAT+TGG + tig0028713:5930-5949 Msa1439120:intron 30.0%
!!! TTTTTGGCTAGAATTGCTTT+TGG + tig0028713:6625-6644 Msa1439120:intron 30.0%
GGTTGTTCTCAAAGAAAATA+AGG + tig0028713:6882-6901 Msa1439120:CDS 30.0%
TGGTTTGAGTGAAACTTTAT+TGG + tig0028713:7149-7168 Msa1439120:three_prime_UTR 30.0%
GGTGATGAATTCTTCAATTG+TGG + tig0028713:5029-5048 Msa1439120:CDS 35.0%
! TTCAATTGTGGTCCTTTTTC+TGG + tig0028713:5041-5060 Msa1439120:CDS 35.0%
ACTTCATCGAAACCTAAATC+CGG - tig0028713:5173-5192 None:intergenic 35.0%
GTACATAATTCAGCAACAGA+AGG - tig0028713:5257-5276 None:intergenic 35.0%
TCGGCTAATTCAATATCAGA+TGG - tig0028713:5434-5453 None:intergenic 35.0%
AGAAAATGAGTGTATAGGGA+TGG + tig0028713:5493-5512 Msa1439120:CDS 35.0%
AGAGAGCTATGAAATTGTTG+AGG + tig0028713:5595-5614 Msa1439120:CDS 35.0%
GAGAGCTATGAAATTGTTGA+GGG + tig0028713:5596-5615 Msa1439120:CDS 35.0%
TGTTGAGGGAGATAATATGA+TGG + tig0028713:5610-5629 Msa1439120:CDS 35.0%
! GGAGATAATATGATGGAGAT+TGG + tig0028713:5617-5636 Msa1439120:CDS 35.0%
TTCTCATGAAACACTTGAAG+AGG + tig0028713:5679-5698 Msa1439120:CDS 35.0%
ATGATGCAGTAATCATTGCA+TGG + tig0028713:5780-5799 Msa1439120:CDS 35.0%
TGATGCAGTAATCATTGCAT+GGG + tig0028713:5781-5800 Msa1439120:CDS 35.0%
TAATGGTGACAAGCCAAATT+TGG + tig0028713:5826-5845 Msa1439120:CDS 35.0%
TTCTCATCAGCATCCAAATT+TGG - tig0028713:5842-5861 None:intergenic 35.0%
CATGAGTGTGTCAAAAATCA+CGG - tig0028713:5987-6006 None:intergenic 35.0%
ACAGTAAAAAAGTGAACAGC+AGG - tig0028713:6166-6185 None:intergenic 35.0%
AAACCTATACACGTTGTTCA+AGG + tig0028713:6501-6520 Msa1439120:intron 35.0%
! TTCTAGAAAAGCTAGAAGCT+AGG + tig0028713:6532-6551 Msa1439120:intron 35.0%
!! TGAACCAAACACGTTGTTTT+TGG + tig0028713:6609-6628 Msa1439120:intron 35.0%
!! CACTGTAGAGAATTGCTTTT+GGG + tig0028713:6648-6667 Msa1439120:intron 35.0%
!! TTATCAGGGAACTTTTGGAA+CGG + tig0028713:6751-6770 Msa1439120:intron 35.0%
CATTATGCTTATGGTGAGTT+TGG + tig0028713:6779-6798 Msa1439120:CDS 35.0%
ATATGGATGTCATCCAGTAA+CGG + tig0028713:6805-6824 Msa1439120:CDS 35.0%
CTCAAAGAAAATAAGGTACG+AGG + tig0028713:6889-6908 Msa1439120:CDS 35.0%
AGAAAATAAGGTACGAGGTT+AGG + tig0028713:6894-6913 Msa1439120:CDS 35.0%
AGAAGAGACCAAGAATGAAA+GGG + tig0028713:6930-6949 Msa1439120:CDS 35.0%
ACAAATCTCCCTTTCATTCT+TGG - tig0028713:6941-6960 None:intergenic 35.0%
! TTCCCTTCACCTAATTTGTC+AGG + tig0028713:4698-4717 Msa1439120:five_prime_UTR 40.0%
CACCTGACAAATTAGGTGAA+GGG - tig0028713:4703-4722 None:intergenic 40.0%
ACACCTGACAAATTAGGTGA+AGG - tig0028713:4704-4723 None:intergenic 40.0%
AAAAACGTAGCAAACGCTGT+TGG + tig0028713:4831-4850 Msa1439120:CDS 40.0%
TTCTTGGTGAAGCCAGAAAA+AGG - tig0028713:5056-5075 None:intergenic 40.0%
!!! TTTTTCTGGCTTCACCAAGA+AGG + tig0028713:5055-5074 Msa1439120:CDS 40.0%
AAATCCGGCACAAGATGAAA+CGG - tig0028713:5158-5177 None:intergenic 40.0%
TTTCATCTTGTGCCGGATTT+AGG + tig0028713:5158-5177 Msa1439120:CDS 40.0%
ATGAAGCGCAACTTCTTTAC+AGG + tig0028713:5216-5235 Msa1439120:CDS 40.0%
TGAAGCGCAACTTCTTTACA+GGG + tig0028713:5217-5236 Msa1439120:CDS 40.0%
GCAACAGAAGGATCGAAAAT+TGG - tig0028713:5245-5264 None:intergenic 40.0%
CTCAACATCAGCTGCAAATT+CGG - tig0028713:5453-5472 None:intergenic 40.0%
AGCTGATGTTGAGAGCTTAT+TGG + tig0028713:5460-5479 Msa1439120:CDS 40.0%
GCTGATGTTGAGAGCTTATT+GGG + tig0028713:5461-5480 Msa1439120:CDS 40.0%
ATGTTGAGAGCTTATTGGGT+AGG + tig0028713:5465-5484 Msa1439120:CDS 40.0%
TGTTGAGAGCTTATTGGGTA+GGG + tig0028713:5466-5485 Msa1439120:CDS 40.0%
TGTATAGGGATGGAAGAGTT+GGG + tig0028713:5503-5522 Msa1439120:CDS 40.0%
TGAAACACTTGAAGAGGTGA+AGG + tig0028713:5685-5704 Msa1439120:CDS 40.0%
ATTTGGATGCTGATGAGAAC+TGG + tig0028713:5843-5862 Msa1439120:CDS 40.0%
! CGTGATTTTTGACACACTCA+TGG + tig0028713:5985-6004 Msa1439120:intron 40.0%
CTTTACAACACTTGCACACA+CGG + tig0028713:6117-6136 Msa1439120:intron 40.0%
TCTCCTTGAACAACGTGTAT+AGG - tig0028713:6507-6526 None:intergenic 40.0%
AGCTAGGATTTGTAGCTTCA+TGG + tig0028713:6548-6567 Msa1439120:intron 40.0%
! GCTTCATGGAGAATTGCTTT+TGG + tig0028713:6562-6581 Msa1439120:intron 40.0%
!! TCATGGAGAATTGCTTTTGG+AGG + tig0028713:6565-6584 Msa1439120:intron 40.0%
CTAGCCAAAAACAACGTGTT+TGG - tig0028713:6616-6635 None:intergenic 40.0%
! GCACTGTAGAGAATTGCTTT+TGG + tig0028713:6647-6666 Msa1439120:intron 40.0%
!! TGTAGAGAATTGCTTTTGGG+TGG + tig0028713:6651-6670 Msa1439120:intron 40.0%
GAACCAAACAGACCCTATAA+AGG + tig0028713:6683-6702 Msa1439120:intron 40.0%
TCACCTTTATAGGGTCTGTT+TGG - tig0028713:6689-6708 None:intergenic 40.0%
ACGGAGGTTCATTATGCTTA+TGG + tig0028713:6770-6789 Msa1439120:CDS 40.0%
TATGCTTATGGTGAGTTTGG+TGG + tig0028713:6782-6801 Msa1439120:CDS 40.0%
! TATGGTGAGTTTGGTGGATA+TGG + tig0028713:6788-6807 Msa1439120:CDS 40.0%
ACAGAGAAAAGCGAAGAACA+AGG + tig0028713:6861-6880 Msa1439120:CDS 40.0%
GAGAAGAGACCAAGAATGAA+AGG + tig0028713:6929-6948 Msa1439120:CDS 40.0%
TGAAAGGGAGATTTGTGAAG+AGG + tig0028713:6945-6964 Msa1439120:CDS 40.0%
GAAAGGGAGATTTGTGAAGA+GGG + tig0028713:6946-6965 Msa1439120:CDS 40.0%
AGGAAATGTTGGAACTGCAA+AGG - tig0028713:6975-6994 None:intergenic 40.0%
TAGGGAGAGGAAAAGGGAAA+AGG - tig0028713:4667-4686 None:intergenic 45.0%
TGTTGGAGGCAAAACTGCTA+GGG + tig0028713:4848-4867 Msa1439120:CDS 45.0%
! GCATAACAAAGAGAGCACGT+TGG + tig0028713:4883-4902 Msa1439120:CDS 45.0%
GCGTCGTACAAGTCCATTAA+TGG + tig0028713:5008-5027 Msa1439120:CDS 45.0%
!! TCTTGGTGTTCTTGCCTTCT+TGG - tig0028713:5072-5091 None:intergenic 45.0%
AAGGCAAGAACACCAAGACA+GGG + tig0028713:5074-5093 Msa1439120:CDS 45.0%
GATTTGTGTTTCCCCTGTCT+TGG - tig0028713:5089-5108 None:intergenic 45.0%
TATCCCGTTTCATCTTGTGC+CGG + tig0028713:5151-5170 Msa1439120:CDS 45.0%
AATCCGGCACAAGATGAAAC+GGG - tig0028713:5157-5176 None:intergenic 45.0%
TGTACTAGTCCTCCTTCAGT+TGG + tig0028713:5272-5291 Msa1439120:CDS 45.0%
TCAGTTGAACCAACTGAAGG+AGG - tig0028713:5284-5303 None:intergenic 45.0%
CCTTCAGTTGAACCAACTGA+AGG - tig0028713:5287-5306 None:intergenic 45.0%
! CCTTCAGTTGGTTCAACTGA+AGG + tig0028713:5284-5303 Msa1439120:CDS 45.0%
! TCAGTTGGTTCAACTGAAGG+AGG + tig0028713:5287-5306 Msa1439120:CDS 45.0%
GTTGAGAGCTTATTGGGTAG+GGG + tig0028713:5467-5486 Msa1439120:CDS 45.0%
GTGTATAGGGATGGAAGAGT+TGG + tig0028713:5502-5521 Msa1439120:CDS 45.0%
! AGTGAGAAGTGGAAGTGTAG+TGG + tig0028713:5551-5570 Msa1439120:CDS 45.0%
! GAAGTGGAAGTGTAGTGGAA+AGG + tig0028713:5556-5575 Msa1439120:CDS 45.0%
! GAAGTGTAGTGGAAAGGTGA+AGG + tig0028713:5562-5581 Msa1439120:CDS 45.0%
AGTGGAAAGGTGAAGGAAGA+AGG + tig0028713:5569-5588 Msa1439120:CDS 45.0%
! CATTAGTCCAGGGACACTTT+TGG - tig0028713:5811-5830 None:intergenic 45.0%
!! CAAAAGTGTCCCTGGACTAA+TGG + tig0028713:5809-5828 Msa1439120:CDS 45.0%
GCAGGTCTAACACAAGTGAA+TGG - tig0028713:6148-6167 None:intergenic 45.0%
TGTCATCCAGTAACGGTAGA+TGG + tig0028713:6812-6831 Msa1439120:CDS 45.0%
!!! TTTTAATTTAATTATTTATC+AGG + tig0028713:6736-6755 Msa1439120:intron 5.0%
!!! TTTAATTTAATTATTTATCA+GGG + tig0028713:6737-6756 Msa1439120:intron 5.0%
AACGTAGCAAACGCTGTTGG+AGG + tig0028713:4834-4853 Msa1439120:CDS 50.0%
CTGTTGGAGGCAAAACTGCT+AGG + tig0028713:4847-4866 Msa1439120:CDS 50.0%
GAAGGCAAGAACACCAAGAC+AGG + tig0028713:5073-5092 Msa1439120:CDS 50.0%
AGGCAAGAACACCAAGACAG+GGG + tig0028713:5075-5094 Msa1439120:CDS 50.0%
GGTTCAACTGAAGGAGGACT+AGG + tig0028713:5293-5312 Msa1439120:CDS 50.0%
AACTGAAGGAGGACTAGGAG+CGG + tig0028713:5298-5317 Msa1439120:CDS 50.0%
AGCATGAGGAGAGTGAGAAG+TGG + tig0028713:5540-5559 Msa1439120:CDS 50.0%
GAAGAGGTGAAGGAGAAGTG+TGG + tig0028713:5695-5714 Msa1439120:CDS 50.0%
GGCTTGTCACCATTAGTCCA+GGG - tig0028713:5821-5840 None:intergenic 50.0%
! TGGCTTGTCACCATTAGTCC+AGG - tig0028713:5822-5841 None:intergenic 50.0%
! TGAGAACTGGCCTGATTGCA+TGG + tig0028713:5856-5875 Msa1439120:CDS 50.0%
!!! TCAGGGAACTTTTGGAACGG+AGG + tig0028713:6754-6773 Msa1439120:intron 50.0%
CATCCAGTAACGGTAGATGG+AGG + tig0028713:6815-6834 Msa1439120:CDS 50.0%
!! GGGATAGCCAAAAGTGTCCC+TGG + tig0028713:5801-5820 Msa1439120:CDS 55.0%
CTGCCTCCATCTACCGTTAC+TGG - tig0028713:6821-6840 None:intergenic 55.0%
AACGGTAGATGGAGGCAGAG+AGG + tig0028713:6823-6842 Msa1439120:CDS 55.0%
TAGATGGAGGCAGAGAGGCA+AGG + tig0028713:6828-6847 Msa1439120:CDS 55.0%
AGATGGAGGCAGAGAGGCAA+GGG + tig0028713:6829-6848 Msa1439120:CDS 55.0%
GCAGAGAGGCAAGGGTTTCA+AGG + tig0028713:6837-6856 Msa1439120:CDS 55.0%
!! ATTCCTCGCTGGTTCGCTGC+TGG - tig0028713:5123-5142 None:intergenic 60.0%
!! CCTCGCTGGTTCGCTGCTGG+AGG - tig0028713:5120-5139 None:intergenic 70.0%
CCTCCAGCAGCGAACCAGCG+AGG + tig0028713:5117-5136 Msa1439120:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0028713 gene 4662 7186 4662 ID=Msa1439120;Name=Msa1439120
tig0028713 mRNA 4662 7186 4662 ID=Msa1439120-mRNA-1;Parent=Msa1439120;Name=Msa1439120-mRNA-1;_AED=0.00;_eAED=0.00;_QI=154|1|1|1|1|1|2|180|436
tig0028713 exon 4662 5877 4662 ID=Msa1439120-mRNA-1:exon:11606;Parent=Msa1439120-mRNA-1
tig0028713 exon 6758 7186 6758 ID=Msa1439120-mRNA-1:exon:11607;Parent=Msa1439120-mRNA-1
tig0028713 five_prime_UTR 4662 4815 4662 ID=Msa1439120-mRNA-1:five_prime_utr;Parent=Msa1439120-mRNA-1
tig0028713 CDS 4816 5877 4816 ID=Msa1439120-mRNA-1:cds;Parent=Msa1439120-mRNA-1
tig0028713 CDS 6758 7006 6758 ID=Msa1439120-mRNA-1:cds;Parent=Msa1439120-mRNA-1
tig0028713 three_prime_UTR 7007 7186 7007 ID=Msa1439120-mRNA-1:three_prime_utr;Parent=Msa1439120-mRNA-1
Gene Sequence

>Msa1439120

ATGACTTGTTCTAGTAAAAACGTAGCAAACGCTGTTGGAGGCAAAACTGCTAGGGCTTGTGACAATTGCATAACAAAGAGAGCACGTTGGTATTGTGCTGCTGATGATGCTTTTCTCTGTCAAGCTTGTGACTCTTCTGTTCATTCAGCTAATTCTTTAGCTCGAAGACATGAAAGAGTTCGTTTGAAAACAGCGTCGTACAAGTCCATTAATGGTGATGAATTCTTCAATTGTGGTCCTTTTTCTGGCTTCACCAAGAAGGCAAGAACACCAAGACAGGGGAAACACAAATCAAAATCATCCTCCAGCAGCGAACCAGCGAGGAATAATAATAATATCCCGTTTCATCTTGTGCCGGATTTAGGTTTCGATGAAGTTAATTCAAATTCACATGACGAAAATGAAGCGCAACTTCTTTACAGGGTACCAATTTTCGATCCTTCTGTTGCTGAATTATGTACTAGTCCTCCTTCAGTTGGTTCAACTGAAGGAGGACTAGGAGCGGTAGTTGTTGCTTCTGCTTTCGCTCCTGATGTTAAATACAATGAGAGTGAAAGCAGAGTTCAACTAGCTAGTGATAATAATTATGAGATGGAAAGCTTTCACGAGCTTCTTCCATCTGATATTGAATTAGCCGAATTTGCAGCTGATGTTGAGAGCTTATTGGGTAGGGGATTAGAAAATGAGTGTATAGGGATGGAAGAGTTGGGATTGATTGATACAAAGCATGAGGAGAGTGAGAAGTGGAAGTGTAGTGGAAAGGTGAAGGAAGAAGGTGAAGAGAGCTATGAAATTGTTGAGGGAGATAATATGATGGAGATTGGAAAAGAATCTTCATTTGAGTTGAATTTTGATTATGATGATTCTCATGAAACACTTGAAGAGGTGAAGGAGAAGTGTGGAGAACAAAATGAAAATAATGATTATAATAAGGGGAAAAGAAAAATATCTTTGCAGCTAGATTATGATGCAGTAATCATTGCATGGGATAGCCAAAAGTGTCCCTGGACTAATGGTGACAAGCCAAATTTGGATGCTGATGAGAACTGGCCTGATTGCATGGGAACTTTTGGAACGGAGGTTCATTATGCTTATGGTGAGTTTGGTGGATATGGATGTCATCCAGTAACGGTAGATGGAGGCAGAGAGGCAAGGGTTTCAAGGTACAGAGAAAAGCGAAGAACAAGGTTGTTCTCAAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCAAGAATGAAAGGGAGATTTGTGAAGAGGGCTTCCTTTGCAGTTCCAACATTTCCTTTGCTAAAATAA

Protein sequence

>Msa1439120

MTCSSKNVANAVGGKTARACDNCITKRARWYCAADDAFLCQACDSSVHSANSLARRHERVRLKTASYKSINGDEFFNCGPFSGFTKKARTPRQGKHKSKSSSSSEPARNNNNIPFHLVPDLGFDEVNSNSHDENEAQLLYRVPIFDPSVAELCTSPPSVGSTEGGLGAVVVASAFAPDVKYNESESRVQLASDNNYEMESFHELLPSDIELAEFAADVESLLGRGLENECIGMEELGLIDTKHEESEKWKCSGKVKEEGEESYEIVEGDNMMEIGKESSFELNFDYDDSHETLEEVKEKCGEQNENNDYNKGKRKISLQLDYDAVIIAWDSQKCPWTNGDKPNLDADENWPDCMGTFGTEVHYAYGEFGGYGCHPVTVDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAVPTFPLLK*