Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649380 | XP_003607601.1 | 95.730 | 445 | 16 | 1 | 1 | 445 | 1 | 442 | 0.0 | 877 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649380 | sp|Q9SJI7|PLA20_ARATH | 61.111 | 414 | 148 | 4 | 34 | 443 | 7 | 411 | 0.0 | 528 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649380 | G7JCM9 | 95.730 | 445 | 16 | 1 | 1 | 445 | 1 | 442 | 0.0 | 877 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000780 | Msa0649380 | 0.847141 | 1.395164e-59 | -8.615850e-47 |
| Msa0038350 | Msa0649380 | -0.820108 | 8.163941e-53 | -8.615850e-47 |
| Msa0043940 | Msa0649380 | 0.859115 | 5.169849e-63 | -8.615850e-47 |
| Msa0048020 | Msa0649380 | 0.810445 | 1.148615e-50 | -8.615850e-47 |
| Msa0050720 | Msa0649380 | 0.808410 | 3.139693e-50 | -8.615850e-47 |
| Msa0073820 | Msa0649380 | 0.833870 | 4.159568e-56 | -8.615850e-47 |
| Msa0079770 | Msa0649380 | 0.827531 | 1.485922e-54 | -8.615850e-47 |
| Msa0084630 | Msa0649380 | 0.812724 | 3.670013e-51 | -8.615850e-47 |
| Msa0092710 | Msa0649380 | 0.845988 | 2.880253e-59 | -8.615850e-47 |
| Msa0605250 | Msa0649380 | 0.800624 | 1.320725e-48 | -8.615850e-47 |
| Msa0605620 | Msa0649380 | 0.800661 | 1.298007e-48 | -8.615850e-47 |
| Msa0610620 | Msa0649380 | 0.807583 | 4.709602e-50 | -8.615850e-47 |
| Msa0628060 | Msa0649380 | 0.810180 | 1.310002e-50 | -8.615850e-47 |
| Msa0629290 | Msa0649380 | 0.807966 | 3.904914e-50 | -8.615850e-47 |
| Msa0649310 | Msa0649380 | 0.847292 | 1.267912e-59 | -8.615850e-47 |
| Msa0649380 | Msa0649420 | 0.990719 | 5.464110e-184 | -8.615850e-47 |
| Msa0649380 | Msa0667970 | 0.805399 | 1.360302e-49 | -8.615850e-47 |
| Msa0649380 | Msa0675010 | 0.808002 | 3.835870e-50 | -8.615850e-47 |
| Msa0649380 | Msa0704220 | 0.824716 | 6.940780e-54 | -8.615850e-47 |
| Msa0649380 | Msa0720270 | 0.813344 | 2.683707e-51 | -8.615850e-47 |
| Msa0649380 | Msa0760890 | 0.837629 | 4.642709e-57 | -8.615850e-47 |
| Msa0649380 | Msa0769830 | 0.817650 | 2.953490e-52 | -8.615850e-47 |
| Msa0649380 | Msa0780140 | 0.807462 | 4.996035e-50 | -8.615850e-47 |
| Msa0649380 | Msa0802210 | 0.819095 | 1.389983e-52 | -8.615850e-47 |
| Msa0649380 | Msa0824140 | 0.802917 | 4.467355e-49 | -8.615850e-47 |
| Msa0649380 | Msa0848360 | 0.813667 | 2.279287e-51 | -8.615850e-47 |
| Msa0649380 | Msa0848760 | 0.815242 | 1.022201e-51 | -8.615850e-47 |
| Msa0649380 | Msa0863250 | 0.808560 | 2.917335e-50 | -8.615850e-47 |
| Msa0649380 | Msa0875630 | 0.810536 | 1.097750e-50 | -8.615850e-47 |
| Msa0649380 | Msa0882700 | 0.834695 | 2.583035e-56 | -8.615850e-47 |
| Msa0649380 | Msa0890250 | 0.806010 | 1.012102e-49 | -8.615850e-47 |
| Msa0649380 | Msa0909710 | 0.815752 | 7.868396e-52 | -8.615850e-47 |
| Msa0649380 | Msa0970050 | 0.804212 | 2.407043e-49 | -8.615850e-47 |
| Msa0649380 | Msa0977320 | 0.803221 | 3.866960e-49 | -8.615850e-47 |
| Msa0649380 | Msa1004210 | 0.815395 | 9.448933e-52 | -8.615850e-47 |
| Msa0649380 | Msa1016670 | 0.808833 | 2.550743e-50 | -8.615850e-47 |
| Msa0649380 | Msa1030870 | 0.835346 | 1.769879e-56 | -8.615850e-47 |
| Msa0649380 | Msa1046610 | 0.815033 | 1.137512e-51 | -8.615850e-47 |
| Msa0649380 | Msa1058010 | 0.843992 | 9.958139e-59 | -8.615850e-47 |
| Msa0649380 | Msa1069960 | 0.814750 | 1.314277e-51 | -8.615850e-47 |
| Msa0649380 | Msa1073840 | 0.831309 | 1.796323e-55 | -8.615850e-47 |
| Msa0649380 | Msa1080620 | 0.819255 | 1.278376e-52 | -8.615850e-47 |
| Msa0649380 | Msa1080690 | 0.812348 | 4.435611e-51 | -8.615850e-47 |
| Msa0649380 | Msa1080840 | 0.846679 | 1.866932e-59 | -8.615850e-47 |
| Msa0649380 | Msa1102540 | 0.824988 | 5.989479e-54 | -8.615850e-47 |
| Msa0649380 | Msa1118980 | 0.846905 | 1.618585e-59 | -8.615850e-47 |
| Msa0649380 | Msa1119860 | 0.805347 | 1.395061e-49 | -8.615850e-47 |
| Msa0649380 | Msa1125780 | 0.803400 | 3.549711e-49 | -8.615850e-47 |
| Msa0649380 | Msa1144950 | 0.808180 | 3.514944e-50 | -8.615850e-47 |
| Msa0649380 | Msa1151820 | 0.825558 | 4.390749e-54 | -8.615850e-47 |
| Msa0649380 | Msa1157730 | 0.808860 | 2.516450e-50 | -8.615850e-47 |
| Msa0649380 | Msa1166240 | -0.803307 | 3.711063e-49 | -8.615850e-47 |
| Msa0649380 | Msa1183390 | 0.834586 | 2.750589e-56 | -8.615850e-47 |
| Msa0649380 | Msa1229050 | 0.803106 | 4.082993e-49 | -8.615850e-47 |
| Msa0649380 | Msa1271490 | 0.800846 | 1.190124e-48 | -8.615850e-47 |
| Msa0649380 | Msa1271510 | 0.822200 | 2.689761e-53 | -8.615850e-47 |
| Msa0649380 | Msa1293050 | 0.816178 | 6.322478e-52 | -8.615850e-47 |
| Msa0649380 | Msa1305750 | 0.802938 | 4.424205e-49 | -8.615850e-47 |
| Msa0649380 | Msa1309360 | 0.835498 | 1.620698e-56 | -8.615850e-47 |
| Msa0649380 | Msa1310110 | 0.816882 | 4.398577e-52 | -8.615850e-47 |
| Msa0649380 | Msa1320380 | 0.807229 | 5.597992e-50 | -8.615850e-47 |
| Msa0649380 | Msa1385900 | 0.811211 | 7.843853e-51 | -8.615850e-47 |
| Msa0649380 | Msa1395230 | -0.802283 | 6.038319e-49 | -8.615850e-47 |
| Msa0649380 | Msa1404370 | 0.800941 | 1.137738e-48 | -8.615850e-47 |
| Msa0649380 | Msa1408710 | 0.808697 | 2.726358e-50 | -8.615850e-47 |
| Msa0649380 | Msa1412520 | 0.816179 | 6.318628e-52 | -8.615850e-47 |
| Msa0649380 | Msa1420520 | 0.844572 | 6.957990e-59 | -8.615850e-47 |
| Msa0649380 | Msa1431730 | 0.821237 | 4.491914e-53 | -8.615850e-47 |
| Msa0649380 | Msa1439120 | 0.859539 | 3.856779e-63 | -8.615850e-47 |
| Msa0649380 | Msa1440220 | 0.840053 | 1.096272e-57 | -8.615850e-47 |
| Msa0649380 | Msa1440610 | 0.804609 | 1.989742e-49 | -8.615850e-47 |
| Msa0649380 | Msa1442290 | 0.816493 | 5.374445e-52 | -8.615850e-47 |
| Msa0649380 | Msa1447230 | 0.806603 | 7.592847e-50 | -8.615850e-47 |
| Msa0649380 | Msa1455660 | 0.859292 | 4.574076e-63 | -8.615850e-47 |
| Msa0127440 | Msa0649380 | 0.812365 | 4.398415e-51 | -8.615850e-47 |
| Msa0137600 | Msa0649380 | 0.802202 | 6.273449e-49 | -8.615850e-47 |
| Msa0141430 | Msa0649380 | 0.808949 | 2.408334e-50 | -8.615850e-47 |
| Msa0171780 | Msa0649380 | 0.806736 | 7.115643e-50 | -8.615850e-47 |
| Msa0171920 | Msa0649380 | 0.808744 | 2.664865e-50 | -8.615850e-47 |
| Msa0171930 | Msa0649380 | 0.810347 | 1.205863e-50 | -8.615850e-47 |
| Msa0182640 | Msa0649380 | 0.821637 | 3.631201e-53 | -8.615850e-47 |
| Msa0198290 | Msa0649380 | 0.821283 | 4.383998e-53 | -8.615850e-47 |
| Msa0200950 | Msa0649380 | -0.816093 | 6.605488e-52 | -8.615850e-47 |
| Msa0367370 | Msa0649380 | 0.815910 | 7.255528e-52 | -8.615850e-47 |
| Msa0380650 | Msa0649380 | 0.850389 | 1.752563e-60 | -8.615850e-47 |
| Msa0430290 | Msa0649380 | 0.852001 | 6.145286e-61 | -8.615850e-47 |
| Msa0432720 | Msa0649380 | 0.800837 | 1.195212e-48 | -8.615850e-47 |
| Msa0473490 | Msa0649380 | 0.800699 | 1.275321e-48 | -8.615850e-47 |
| Msa0239660 | Msa0649380 | 0.810735 | 9.941249e-51 | -8.615850e-47 |
| Msa0318250 | Msa0649380 | 0.816470 | 5.438277e-52 | -8.615850e-47 |
| Msa0318270 | Msa0649380 | 0.851470 | 8.693388e-61 | -8.615850e-47 |
| Msa0318310 | Msa0649380 | 0.845753 | 3.336012e-59 | -8.615850e-47 |
| Msa0323990 | Msa0649380 | 0.826078 | 3.304780e-54 | -8.615850e-47 |
| Msa0334980 | Msa0649380 | 0.808748 | 2.658586e-50 | -8.615850e-47 |
| Msa0341460 | Msa0649380 | -0.805026 | 1.628236e-49 | -8.615850e-47 |
| Msa0526640 | Msa0649380 | -0.817545 | 3.119551e-52 | -8.615850e-47 |
| Msa0527600 | Msa0649380 | 0.804869 | 1.756398e-49 | -8.615850e-47 |
| Msa0530930 | Msa0649380 | 0.803367 | 3.605288e-49 | -8.615850e-47 |
| Msa0555370 | Msa0649380 | 0.889305 | 2.728060e-73 | -8.615850e-47 |
| Msa0578070 | Msa0649380 | -0.807919 | 3.995077e-50 | -8.615850e-47 |
| Msa0587900 | Msa0649380 | 0.818078 | 2.364130e-52 | -8.615850e-47 |
| Msa0602210 | Msa0649380 | -0.801064 | 1.074060e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649380 | MtrunA17_Chr4g0041311 | 95.730 | 445 | 16 | 1 | 1 | 445 | 1 | 442 | 0.0 | 877 |
| Msa0649380 | MtrunA17_Chr2g0283561 | 47.291 | 406 | 179 | 5 | 35 | 430 | 43 | 423 | 3.04e-125 | 370 |
| Msa0649380 | MtrunA17_Chr4g0046001 | 39.953 | 423 | 208 | 8 | 21 | 430 | 3 | 392 | 3.80e-96 | 295 |
| Msa0649380 | MtrunA17_Chr4g0046011 | 39.951 | 408 | 203 | 6 | 34 | 430 | 7 | 383 | 8.66e-96 | 293 |
| Msa0649380 | MtrunA17_Chr4g0039301 | 36.806 | 432 | 212 | 10 | 33 | 436 | 102 | 500 | 2.66e-86 | 273 |
| Msa0649380 | MtrunA17_Chr7g0260671 | 34.813 | 428 | 226 | 6 | 32 | 433 | 75 | 475 | 2.05e-81 | 259 |
| Msa0649380 | MtrunA17_Chr7g0260681 | 32.817 | 387 | 205 | 7 | 21 | 378 | 60 | 420 | 1.84e-62 | 208 |
| Msa0649380 | MtrunA17_Chr7g0214711 | 35.054 | 368 | 168 | 12 | 35 | 376 | 109 | 431 | 3.23e-50 | 177 |
| Msa0649380 | MtrunA17_Chr7g0250561 | 32.381 | 420 | 216 | 12 | 19 | 396 | 57 | 450 | 3.94e-50 | 176 |
| Msa0649380 | MtrunA17_Chr5g0399641 | 29.877 | 405 | 222 | 9 | 20 | 395 | 124 | 495 | 4.39e-49 | 175 |
| Msa0649380 | MtrunA17_Chr7g0250611 | 32.990 | 388 | 201 | 13 | 28 | 394 | 72 | 421 | 4.46e-45 | 162 |
| Msa0649380 | MtrunA17_Chr4g0055691 | 31.362 | 389 | 198 | 9 | 35 | 395 | 133 | 480 | 3.28e-42 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649380 | AT2G42690.1 | 61.111 | 414 | 148 | 4 | 34 | 443 | 7 | 411 | 0.0 | 528 |
| Msa0649380 | AT4G18550.1 | 42.548 | 416 | 199 | 8 | 28 | 430 | 16 | 404 | 4.98e-106 | 321 |
| Msa0649380 | AT4G18550.2 | 43.032 | 409 | 193 | 8 | 35 | 430 | 40 | 421 | 9.21e-106 | 321 |
| Msa0649380 | AT1G06250.1 | 39.558 | 407 | 210 | 6 | 35 | 430 | 9 | 390 | 1.54e-93 | 289 |
| Msa0649380 | AT1G51440.1 | 37.788 | 434 | 206 | 11 | 32 | 431 | 88 | 491 | 1.91e-83 | 266 |
| Msa0649380 | AT2G30550.2 | 35.402 | 435 | 215 | 11 | 32 | 433 | 102 | 503 | 2.04e-80 | 258 |
| Msa0649380 | AT1G06800.1 | 36.406 | 434 | 217 | 12 | 28 | 431 | 82 | 486 | 4.21e-78 | 252 |
| Msa0649380 | AT1G30370.1 | 33.259 | 448 | 238 | 12 | 22 | 442 | 105 | 518 | 3.51e-74 | 242 |
| Msa0649380 | AT4G18550.3 | 41.137 | 299 | 140 | 6 | 35 | 322 | 40 | 313 | 4.96e-70 | 225 |
| Msa0649380 | AT1G06250.2 | 40.199 | 301 | 146 | 5 | 139 | 430 | 1 | 276 | 9.32e-65 | 211 |
| Msa0649380 | AT2G30550.1 | 34.646 | 381 | 183 | 11 | 32 | 379 | 102 | 449 | 1.15e-64 | 215 |
| Msa0649380 | AT1G06800.2 | 35.509 | 383 | 188 | 12 | 26 | 378 | 80 | 433 | 9.63e-63 | 209 |
| Msa0649380 | AT2G31690.1 | 32.065 | 368 | 189 | 9 | 33 | 376 | 90 | 420 | 1.34e-50 | 178 |
| Msa0649380 | AT1G05800.1 | 32.115 | 383 | 193 | 10 | 21 | 376 | 67 | 409 | 3.16e-47 | 169 |
| Msa0649380 | AT4G16820.1 | 31.443 | 388 | 198 | 11 | 35 | 394 | 131 | 478 | 8.06e-44 | 161 |
| Msa0649380 | AT2G44810.2 | 30.653 | 398 | 211 | 12 | 27 | 394 | 83 | 445 | 1.70e-41 | 153 |
| Msa0649380 | AT2G44810.1 | 31.169 | 385 | 201 | 12 | 40 | 394 | 5 | 355 | 1.72e-40 | 148 |
Find 150 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCTCATCTCATTTCTTT+TGG | 0.177812 | 4_3:-56028288 | Msa0649380:five_prime_UTR |
| AGCGGGTGAGTGTGTTATTT+GGG | 0.254574 | 4_3:+56028189 | None:intergenic |
| CATTATCCAGGGAAGTTATT+GGG | 0.257904 | 4_3:-56026049 | Msa0649380:CDS |
| AGAGTTGGTTCCATGTTTCT+TGG | 0.259076 | 4_3:+56028057 | None:intergenic |
| ACCTTTGGTGTGAGCCTATA+AGG | 0.261287 | 4_3:-56025475 | Msa0649380:three_prime_UTR |
| CCCGTTGCTGCATTTGTGTT+TGG | 0.261484 | 4_3:-56026169 | Msa0649380:CDS |
| GTACCCTTATTATTCTTGTC+TGG | 0.276776 | 4_3:+56027561 | None:intergenic |
| TAACATGGATTATTCCTTAT+AGG | 0.281197 | 4_3:+56025461 | None:intergenic |
| GCCAACCCTTCATTACTTTA+GGG | 0.284383 | 4_3:+56026392 | None:intergenic |
| CCTCCCAGACAAGAATAATA+AGG | 0.286496 | 4_3:-56027565 | Msa0649380:CDS |
| ACATTATCCAGGGAAGTTAT+TGG | 0.290351 | 4_3:-56026050 | Msa0649380:CDS |
| TAACATGGATTATTCCTTAT+AGG | 0.303692 | 4_3:+56025693 | None:intergenic |
| GAGCGGGTGAGTGTGTTATT+TGG | 0.304206 | 4_3:+56028188 | None:intergenic |
| AGCCAACCCTTCATTACTTT+AGG | 0.309054 | 4_3:+56026391 | None:intergenic |
| CCGTTGCTGCATTTGTGTTT+GGG | 0.335466 | 4_3:-56026168 | Msa0649380:CDS |
| CTGGTTGGAATGGGAGTGAT+GGG | 0.360921 | 4_3:-56025913 | Msa0649380:CDS |
| GGAACAAAGCTTTCAATGAT+AGG | 0.361448 | 4_3:-56026132 | Msa0649380:CDS |
| GTGTAGGGAGGATGGGGAAT+GGG | 0.361549 | 4_3:-56025774 | Msa0649380:CDS |
| GGTGAAGGTGAAGAGGAGTT+TGG | 0.362136 | 4_3:-56025882 | Msa0649380:CDS |
| GAAACATGGAACCAACTCTT+AGG | 0.363153 | 4_3:-56028053 | Msa0649380:CDS |
| TGGTGGGTTGCGACGAATAA+AGG | 0.365880 | 4_3:-56025803 | Msa0649380:CDS |
| GTTGGGACCGTGAGTCTAAC+TGG | 0.369388 | 4_3:-56027758 | Msa0649380:CDS |
| ACAGGCAGGTCCTCCTTCTC+TGG | 0.374799 | 4_3:+56025743 | None:intergenic |
| TGACTCTGTATATGCCTATA+AGG | 0.379605 | 4_3:-56025707 | Msa0649380:three_prime_UTR |
| CTCACTTTCACGTGAGAGTT+GGG | 0.381537 | 4_3:-56027775 | Msa0649380:CDS |
| TATTAAATTATTCAGAGAAA+AGG | 0.382492 | 4_3:+56025356 | None:intergenic |
| TATTAAATTATTCAGAGAAA+AGG | 0.382492 | 4_3:+56025588 | None:intergenic |
| AACCGCAGTAGATAGAGTTT+TGG | 0.382882 | 4_3:+56027922 | None:intergenic |
| AACTCTTAGGAAACAACAAC+TGG | 0.382925 | 4_3:-56028040 | Msa0649380:CDS |
| TACCCTTATTATTCTTGTCT+GGG | 0.392329 | 4_3:+56027562 | None:intergenic |
| GCTGGTTGGAATGGGAGTGA+TGG | 0.408221 | 4_3:-56025914 | Msa0649380:CDS |
| TGGGAGTGATGGGGAGTTTG+AGG | 0.408734 | 4_3:-56025903 | Msa0649380:CDS |
| CATGACTTTGTTAAAGAATG+AGG | 0.410558 | 4_3:+56027881 | None:intergenic |
| ATACAGAGTCAATACTCTTC+AGG | 0.411989 | 4_3:+56025719 | None:intergenic |
| TGTTTGGGTCCCCACAAGTT+GGG | 0.424136 | 4_3:-56026153 | Msa0649380:CDS |
| GTATGGTGTGTAGGGAGGAT+GGG | 0.426496 | 4_3:-56025781 | Msa0649380:CDS |
| TTATTGGGGTATGAGTATAC+TGG | 0.426672 | 4_3:-56026034 | Msa0649380:CDS |
| ATAGGCTCACACCAAAGGTT+TGG | 0.428821 | 4_3:+56025479 | None:intergenic |
| CATATTGTGGCTGGTTGGAA+TGG | 0.429515 | 4_3:-56025923 | Msa0649380:CDS |
| TAAGTCTTGTGATTACTTGA+AGG | 0.431881 | 4_3:-56025849 | Msa0649380:CDS |
| AATCCAAGTGTGGTATTAGT+AGG | 0.433511 | 4_3:-56026262 | Msa0649380:CDS |
| TACTGCGGTTCAAGCCGTTA+TGG | 0.436707 | 4_3:-56027909 | Msa0649380:CDS |
| ACAAGCTCACACCAAAGGTT+TGG | 0.439871 | 4_3:+56025247 | None:intergenic |
| CCAAACACAAATGCAGCAAC+GGG | 0.442597 | 4_3:+56026169 | None:intergenic |
| ATTAAATTATTCAGAGAAAA+GGG | 0.443253 | 4_3:+56025357 | None:intergenic |
| ATTAAATTATTCAGAGAAAA+GGG | 0.443253 | 4_3:+56025589 | None:intergenic |
| GATCTTATACCACATTATCC+AGG | 0.444039 | 4_3:-56026061 | Msa0649380:CDS |
| GAGTGAAGAATAAAAGCTTC+AGG | 0.445100 | 4_3:+56027795 | None:intergenic |
| GGTATGGTGTGTAGGGAGGA+TGG | 0.447748 | 4_3:-56025782 | Msa0649380:CDS |
| CGAATAAAGGTATGGTGTGT+AGG | 0.451063 | 4_3:-56025790 | Msa0649380:CDS |
| ATTCGAAGAATCCAAGTGAT+TGG | 0.456518 | 4_3:-56025967 | Msa0649380:CDS |
| AACAAACTAGAAGCAGATTC+AGG | 0.459461 | 4_3:+56027615 | None:intergenic |
| TGCAAATTATGCCAATCACT+TGG | 0.462899 | 4_3:+56025956 | None:intergenic |
| AGTTGTTGTTTCCTAAGAGT+TGG | 0.465002 | 4_3:+56028042 | None:intergenic |
| CTCCCAGACAAGAATAATAA+GGG | 0.473299 | 4_3:-56027564 | Msa0649380:intron |
| GTGAGGAGTTGATGAGGGAA+GGG | 0.473696 | 4_3:+56028227 | None:intergenic |
| TGAGTGTGTTATTTGGGGAG+TGG | 0.483253 | 4_3:+56028195 | None:intergenic |
| AAGCTTTGTTCCCAACTTGT+GGG | 0.484528 | 4_3:+56026143 | None:intergenic |
| AAAGCTTTGTTCCCAACTTG+TGG | 0.491555 | 4_3:+56026142 | None:intergenic |
| ACTCACTTTCACGTGAGAGT+TGG | 0.492991 | 4_3:-56027776 | Msa0649380:CDS |
| CCCAAACACAAATGCAGCAA+CGG | 0.494417 | 4_3:+56026168 | None:intergenic |
| AGTGTCACGTGCCGGCGTCA+TGG | 0.494975 | 4_3:-56025823 | Msa0649380:CDS |
| TTGTGTGGCGTGGTACTACT+AGG | 0.495241 | 4_3:-56027671 | Msa0649380:CDS |
| AGTTTGAGGTGAAGGTGAAG+AGG | 0.496715 | 4_3:-56025889 | Msa0649380:CDS |
| TATGGTGTGTAGGGAGGATG+GGG | 0.498795 | 4_3:-56025780 | Msa0649380:CDS |
| CTCACTCACTCACTTTAACA+TGG | 0.501665 | 4_3:-56028168 | Msa0649380:exon |
| CTGGAGTGGATTAACGTGTT+TGG | 0.501745 | 4_3:-56027645 | Msa0649380:CDS |
| GAGAGTCCCTAAAGTAATGA+AGG | 0.502197 | 4_3:-56026398 | Msa0649380:CDS |
| TGTGTAGGGAGGATGGGGAA+TGG | 0.502452 | 4_3:-56025775 | Msa0649380:CDS |
| GTATTTCATAAGCTATTGCC+TGG | 0.505272 | 4_3:-56025303 | Msa0649380:three_prime_UTR |
| GTATTTCATAAGCTATTGCC+TGG | 0.505272 | 4_3:-56025535 | Msa0649380:three_prime_UTR |
| GGATGAGGTTGCGGAGATTG+AGG | 0.506364 | 4_3:+56027994 | None:intergenic |
| TGTGTCTGTTGCCATGTCCA+AGG | 0.507555 | 4_3:+56028124 | None:intergenic |
| TGATGGGGAGTTTGAGGTGA+AGG | 0.510458 | 4_3:-56025897 | Msa0649380:CDS |
| CGATGAACGGAGTAGAGAGT+TGG | 0.517745 | 4_3:-56027712 | Msa0649380:CDS |
| TCCCTAAAGTAATGAAGGGT+TGG | 0.517931 | 4_3:-56026393 | Msa0649380:CDS |
| ATATTGTGGCTGGTTGGAAT+GGG | 0.519997 | 4_3:-56025922 | Msa0649380:CDS |
| GCAAGCTATGTTGCATATTG+TGG | 0.523056 | 4_3:-56025936 | Msa0649380:CDS |
| TGTGAGGAGTTGATGAGGGA+AGG | 0.524098 | 4_3:+56028226 | None:intergenic |
| GAATAAAGGTATGGTGTGTA+GGG | 0.527705 | 4_3:-56025789 | Msa0649380:CDS |
| CAACTCTCTACTCCGTTCAT+CGG | 0.527868 | 4_3:+56027713 | None:intergenic |
| CACAACGGAGGATGAGGTTG+CGG | 0.530460 | 4_3:+56027985 | None:intergenic |
| GACCGTGAGTCTAACTGGAT+TGG | 0.532608 | 4_3:-56027753 | Msa0649380:CDS |
| GCTATGTTGCATATTGTGGC+TGG | 0.532700 | 4_3:-56025932 | Msa0649380:CDS |
| TCATACCCCAATAACTTCCC+TGG | 0.532892 | 4_3:+56026043 | None:intergenic |
| TTGCGGAGATTGAGGTCTAG+TGG | 0.537408 | 4_3:+56028002 | None:intergenic |
| ATACACGTGAAGTAGCATAA+AGG | 0.538445 | 4_3:+56027823 | None:intergenic |
| GTCACGTGCCGGCGTCATGG+TGG | 0.539164 | 4_3:-56025820 | Msa0649380:CDS |
| TCCTTATAGGCTCACACCAA+AGG | 0.540120 | 4_3:+56025474 | None:intergenic |
| TGTTGCATATTGTGGCTGGT+TGG | 0.546285 | 4_3:-56025928 | Msa0649380:CDS |
| ACACAACAGTGTAGTGTGTA+GGG | 0.546335 | 4_3:+56027850 | None:intergenic |
| TGCGGAGATTGAGGTCTAGT+GGG | 0.547441 | 4_3:+56028003 | None:intergenic |
| CCTTATTATTCTTGTCTGGG+AGG | 0.547834 | 4_3:+56027565 | None:intergenic |
| GATGAACGGAGTAGAGAGTT+GGG | 0.549457 | 4_3:-56027711 | Msa0649380:CDS |
| ATGGGTTGATGCACCAGAGA+AGG | 0.557126 | 4_3:-56025756 | Msa0649380:CDS |
| TCACGTGCCGGCGTCATGGT+GGG | 0.557826 | 4_3:-56025819 | Msa0649380:CDS |
| GTGTTTGGGTCCCCACAAGT+TGG | 0.557854 | 4_3:-56026154 | Msa0649380:CDS |
| CGCAACCTCATCCTCCGTTG+TGG | 0.560178 | 4_3:-56027984 | Msa0649380:CDS |
| AATACTCTTCAGGCACAGGC+AGG | 0.565284 | 4_3:+56025729 | None:intergenic |
| ATCTTATACCACATTATCCA+GGG | 0.566732 | 4_3:-56026060 | Msa0649380:CDS |
| TAAAGGTATGGTGTGTAGGG+AGG | 0.567589 | 4_3:-56025786 | Msa0649380:CDS |
| ATTATCCAGGGAAGTTATTG+GGG | 0.567947 | 4_3:-56026048 | Msa0649380:CDS |
| GTCGTTGTTAAAGGAGTCGT+AGG | 0.568720 | 4_3:+56027944 | None:intergenic |
| GTGTCTGTTGCCATGTCCAA+GGG | 0.573129 | 4_3:+56028125 | None:intergenic |
| TGTCCTACTAATACCACACT+TGG | 0.573233 | 4_3:+56026259 | None:intergenic |
| AGTCACCACAACGGAGGATG+AGG | 0.574935 | 4_3:+56027979 | None:intergenic |
| AATAACTTCCCTGGATAATG+TGG | 0.577975 | 4_3:+56026052 | None:intergenic |
| TATTGGGGTATGAGTATACT+GGG | 0.578108 | 4_3:-56026033 | Msa0649380:CDS |
| TATATTGTGAGGAGTTGATG+AGG | 0.578903 | 4_3:+56028221 | None:intergenic |
| TGAGTATACTGGGACAGAGT+TGG | 0.580146 | 4_3:-56026023 | Msa0649380:CDS |
| GGGAGTGGATATATATTGTG+AGG | 0.581036 | 4_3:+56028210 | None:intergenic |
| TCGCTGTTAGTTCCGATGAA+CGG | 0.581063 | 4_3:-56027725 | Msa0649380:CDS |
| AGCTTTGTTCCCAACTTGTG+GGG | 0.583051 | 4_3:+56026144 | None:intergenic |
| TGGTTGGAATGGGAGTGATG+GGG | 0.584414 | 4_3:-56025912 | Msa0649380:CDS |
| TCACTCACTCACTTTAACAT+GGG | 0.585219 | 4_3:-56028167 | Msa0649380:exon |
| GAAGGAAGAGTGTCACGTGC+CGG | 0.589437 | 4_3:-56025831 | Msa0649380:CDS |
| TGTTATACAGCATGGTAACA+TGG | 0.596633 | 4_3:+56025446 | None:intergenic |
| TGTTATACAGCATGGTAACA+TGG | 0.596633 | 4_3:+56025678 | None:intergenic |
| GTCGCAACCCACCATGACGC+CGG | 0.606178 | 4_3:+56025812 | None:intergenic |
| TGTTTACAAGCTCACACCAA+AGG | 0.608748 | 4_3:+56025242 | None:intergenic |
| AGTCAATACTCTTCAGGCAC+AGG | 0.610040 | 4_3:+56025725 | None:intergenic |
| GATGAGGGAAGGGAAGTTTG+TGG | 0.610090 | 4_3:+56028237 | None:intergenic |
| GGTTGATGCACCAGAGAAGG+AGG | 0.611115 | 4_3:-56025753 | Msa0649380:CDS |
| GGTTGCGACGAATAAAGGTA+TGG | 0.611496 | 4_3:-56025798 | Msa0649380:CDS |
| GCGTGGTACTACTAGGGACC+TGG | 0.616633 | 4_3:-56027664 | Msa0649380:CDS |
| GACACAACAGTGTAGTGTGT+AGG | 0.616775 | 4_3:+56027849 | None:intergenic |
| ATATTGTGAGGAGTTGATGA+GGG | 0.617780 | 4_3:+56028222 | None:intergenic |
| GCGGGTGAGTGTGTTATTTG+GGG | 0.618376 | 4_3:+56028190 | None:intergenic |
| AGAGTCCCTAAAGTAATGAA+GGG | 0.626570 | 4_3:-56026397 | Msa0649380:CDS |
| CAGTACAATGTTATACAGCA+TGG | 0.630286 | 4_3:+56025438 | None:intergenic |
| CAGTACAATGTTATACAGCA+TGG | 0.630286 | 4_3:+56025670 | None:intergenic |
| CAAACACGTTAATCCACTCC+AGG | 0.633191 | 4_3:+56027646 | None:intergenic |
| CAAGAATGAAAATCCAAGTG+TGG | 0.634400 | 4_3:-56026272 | Msa0649380:CDS |
| GTATTAGTAGGACATAGTCT+AGG | 0.639227 | 4_3:-56026250 | Msa0649380:CDS |
| TAGCAGCAGCAGTGACGATG+AGG | 0.641877 | 4_3:-56026428 | Msa0649380:CDS |
| ACTCTCAAAACTATAGAACC+AGG | 0.643970 | 4_3:+56025285 | None:intergenic |
| ACTCTCAAAACTATAGAACC+AGG | 0.643970 | 4_3:+56025517 | None:intergenic |
| TAGAGTAACAAACAAAACAA+AGG | 0.649926 | 4_3:+56025414 | None:intergenic |
| TAGAGTAACAAACAAAACAA+AGG | 0.649926 | 4_3:+56025646 | None:intergenic |
| GTCGTGAAATATATGTTGTG+TGG | 0.660451 | 4_3:-56027686 | Msa0649380:CDS |
| AACCAATCCAGTTAGACTCA+CGG | 0.662669 | 4_3:+56027751 | None:intergenic |
| GAAATATATGTTGTGTGGCG+TGG | 0.672854 | 4_3:-56027681 | Msa0649380:CDS |
| GTACTACTAGGGACCTGGAG+TGG | 0.677827 | 4_3:-56027659 | Msa0649380:CDS |
| TGTGTGGCGTGGTACTACTA+GGG | 0.683087 | 4_3:-56027670 | Msa0649380:CDS |
| GTTAAAGTGAGTGAGTGAGC+GGG | 0.699630 | 4_3:+56028172 | None:intergenic |
| TTTGTATGAAGTCACCACAA+CGG | 0.704168 | 4_3:+56027970 | None:intergenic |
| ACTCTTAGGAAACAACAACT+GGG | 0.710330 | 4_3:-56028039 | Msa0649380:CDS |
| GACCAAAACTCTATCTACTG+CGG | 0.719453 | 4_3:-56027924 | Msa0649380:CDS |
| TGTTAAAGTGAGTGAGTGAG+CGG | 0.719644 | 4_3:+56028171 | None:intergenic |
| GTATGAAGTCACCACAACGG+AGG | 0.734924 | 4_3:+56027973 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAACTTGATATTTATTTAA+GGG | + | chr4_3:56026580-56026599 | None:intergenic | 15.0% |
| !!! | AATCAAATTTTAAAACTGAT+GGG | + | chr4_3:56026742-56026761 | None:intergenic | 15.0% |
| !! | ATTAAATTATTCAGAGAAAA+GGG | + | chr4_3:56028002-56028021 | None:intergenic | 15.0% |
| !! | TATTAAATTATTCAGAGAAA+AGG | + | chr4_3:56028003-56028022 | None:intergenic | 15.0% |
| !! | ATTAAATTATTCAGAGAAAA+GGG | + | chr4_3:56028002-56028021 | None:intergenic | 15.0% |
| !! | TATTAAATTATTCAGAGAAA+AGG | + | chr4_3:56028003-56028022 | None:intergenic | 15.0% |
| !!! | ACTACTTTAAGAAAAAAGAT+AGG | - | chr4_3:56025248-56025267 | Msa0649380:three_prime_UTR | 20.0% |
| !! | GTTTATGTAAGATCTAAAAA+TGG | + | chr4_3:56026091-56026110 | None:intergenic | 20.0% |
| !! | GTAAATATAACTCATTAACA+TGG | - | chr4_3:56026352-56026371 | Msa0649380:CDS | 20.0% |
| !! | GGTAACTTGATATTTATTTA+AGG | + | chr4_3:56026581-56026600 | None:intergenic | 20.0% |
| !!! | ATAAAAATTTAACTGACTCT+AGG | - | chr4_3:56026650-56026669 | Msa0649380:intron | 20.0% |
| !!! | GAATCAAATTTTAAAACTGA+TGG | + | chr4_3:56026743-56026762 | None:intergenic | 20.0% |
| !! | CAAAAAGTTTCAAAATTTGA+AGG | - | chr4_3:56027481-56027500 | Msa0649380:intron | 20.0% |
| !!! | ATATTTTATAACCAAACCTT+TGG | - | chr4_3:56028098-56028117 | Msa0649380:CDS | 20.0% |
| !!! | ATATTTTATAACCAAACCTT+TGG | - | chr4_3:56028098-56028117 | Msa0649380:CDS | 20.0% |
| !! | TTTTTCTTAAAGTAGTGTGA+TGG | + | chr4_3:56025244-56025263 | None:intergenic | 25.0% |
| !! | ATTTCTCATCTCATTTCTTT+TGG | - | chr4_3:56025300-56025319 | Msa0649380:three_prime_UTR | 25.0% |
| !!! | GTTTCTTGGTTTATTTTTGT+TGG | + | chr4_3:56025520-56025539 | None:intergenic | 25.0% |
| ! | CAAAAATAAACCAAGAAACA+TGG | - | chr4_3:56025521-56025540 | Msa0649380:three_prime_UTR | 25.0% |
| ! | TGTAAGATCTAAAAATGGAT+AGG | + | chr4_3:56026086-56026105 | None:intergenic | 25.0% |
| !!! | TTGCAGAGAATATTTTTTCA+AGG | + | chr4_3:56026602-56026621 | None:intergenic | 25.0% |
| ! | AAAAATATTCTCTGCAAATG+TGG | - | chr4_3:56026605-56026624 | Msa0649380:intron | 25.0% |
| ! | AAAATATTCTCTGCAAATGT+GGG | - | chr4_3:56026606-56026625 | Msa0649380:intron | 25.0% |
| ! | GTTAATTAAATGATGTCAAG+AGG | - | chr4_3:56026690-56026709 | Msa0649380:intron | 25.0% |
| !! | AAGAATTCCTTCTATTTTCT+GGG | + | chr4_3:56026866-56026885 | None:intergenic | 25.0% |
| ! | TGTCACATAGACTTTATAAA+TGG | + | chr4_3:56027055-56027074 | None:intergenic | 25.0% |
| ! | CGTTACATAGACTTTATAAA+TGG | + | chr4_3:56027096-56027115 | None:intergenic | 25.0% |
| !! | TTTTTGTGAAAGGAGATTTT+GGG | + | chr4_3:56027244-56027263 | None:intergenic | 25.0% |
| !! | TAACATGGATTATTCCTTAT+AGG | + | chr4_3:56027898-56027917 | None:intergenic | 25.0% |
| ! | TAGAGTAACAAACAAAACAA+AGG | + | chr4_3:56027945-56027964 | None:intergenic | 25.0% |
| !! | TAACATGGATTATTCCTTAT+AGG | + | chr4_3:56027898-56027917 | None:intergenic | 25.0% |
| ! | TAGAGTAACAAACAAAACAA+AGG | + | chr4_3:56027945-56027964 | None:intergenic | 25.0% |
| !!! | TTTATTTTTGTTGGTTGTGG+TGG | + | chr4_3:56025511-56025530 | None:intergenic | 30.0% |
| !!! | TGGTTTATTTTTGTTGGTTG+TGG | + | chr4_3:56025514-56025533 | None:intergenic | 30.0% |
| CATGACTTTGTTAAAGAATG+AGG | + | chr4_3:56025710-56025729 | None:intergenic | 30.0% | |
| TACCCTTATTATTCTTGTCT+GGG | + | chr4_3:56026029-56026048 | None:intergenic | 30.0% | |
| AAACATACTTAAACCGAGTT+TGG | - | chr4_3:56026107-56026126 | Msa0649380:CDS | 30.0% | |
| AACATACTTAAACCGAGTTT+GGG | - | chr4_3:56026108-56026127 | Msa0649380:CDS | 30.0% | |
| TTGTATGAGATTTAGAAGCA+TGG | - | chr4_3:56026136-56026155 | Msa0649380:CDS | 30.0% | |
| ! | TTTAGAAGCATGGAATCTAT+AGG | - | chr4_3:56026146-56026165 | Msa0649380:CDS | 30.0% |
| GATTGAAACTCTGAACTAAA+AGG | + | chr4_3:56026413-56026432 | None:intergenic | 30.0% | |
| ! | CAAGAATTCCTTCTATTTTC+TGG | + | chr4_3:56026867-56026886 | None:intergenic | 30.0% |
| CAGAAAATAGAAGGAATTCT+TGG | - | chr4_3:56026865-56026884 | Msa0649380:intron | 30.0% | |
| ! | TGCTTTTATGCATAACTCTT+CGG | - | chr4_3:56026906-56026925 | Msa0649380:intron | 30.0% |
| AAAGTCTATGTGACATGTAT+TGG | - | chr4_3:56027060-56027079 | Msa0649380:intron | 30.0% | |
| ! | GTTTTTGTGAAAGGAGATTT+TGG | + | chr4_3:56027245-56027264 | None:intergenic | 30.0% |
| !! | AATTGTGAGTGCTTTTGATT+TGG | - | chr4_3:56027373-56027392 | Msa0649380:intron | 30.0% |
| ! | ATTTGAAGGTTTTACATGTG+AGG | - | chr4_3:56027495-56027514 | Msa0649380:intron | 30.0% |
| ATCTTATACCACATTATCCA+GGG | - | chr4_3:56027528-56027547 | Msa0649380:intron | 30.0% | |
| ! | TAAGTCTTGTGATTACTTGA+AGG | - | chr4_3:56027739-56027758 | Msa0649380:CDS | 30.0% |
| !! | ATATTGTGAGGAGTTGATGA+GGG | + | chr4_3:56025369-56025388 | None:intergenic | 35.0% |
| !! | TATATTGTGAGGAGTTGATG+AGG | + | chr4_3:56025370-56025389 | None:intergenic | 35.0% |
| TCACTCACTCACTTTAACAT+GGG | - | chr4_3:56025421-56025440 | Msa0649380:three_prime_UTR | 35.0% | |
| !! | AGTTGTTGTTTCCTAAGAGT+TGG | + | chr4_3:56025549-56025568 | None:intergenic | 35.0% |
| AACTCTTAGGAAACAACAAC+TGG | - | chr4_3:56025548-56025567 | Msa0649380:three_prime_UTR | 35.0% | |
| ACTCTTAGGAAACAACAACT+GGG | - | chr4_3:56025549-56025568 | Msa0649380:three_prime_UTR | 35.0% | |
| TTTGTATGAAGTCACCACAA+CGG | + | chr4_3:56025621-56025640 | None:intergenic | 35.0% | |
| !! | AGAGTTTTGGTCGTTGTTAA+AGG | + | chr4_3:56025656-56025675 | None:intergenic | 35.0% |
| ! | AGAATGAGGTTTTGCCATAA+CGG | + | chr4_3:56025696-56025715 | None:intergenic | 35.0% |
| ATACACGTGAAGTAGCATAA+AGG | + | chr4_3:56025768-56025787 | None:intergenic | 35.0% | |
| GAGTGAAGAATAAAAGCTTC+AGG | + | chr4_3:56025796-56025815 | None:intergenic | 35.0% | |
| GTCGTGAAATATATGTTGTG+TGG | - | chr4_3:56025902-56025921 | Msa0649380:CDS | 35.0% | |
| AACAAACTAGAAGCAGATTC+AGG | + | chr4_3:56025976-56025995 | None:intergenic | 35.0% | |
| CTCCCAGACAAGAATAATAA+GGG | - | chr4_3:56026024-56026043 | Msa0649380:CDS | 35.0% | |
| GTACCCTTATTATTCTTGTC+TGG | + | chr4_3:56026030-56026049 | None:intergenic | 35.0% | |
| ACATACTTAAACCGAGTTTG+GGG | - | chr4_3:56026109-56026128 | Msa0649380:CDS | 35.0% | |
| ATTAACATGGTGTGACAGAA+GGG | - | chr4_3:56026365-56026384 | Msa0649380:CDS | 35.0% | |
| TAGTTCAGAGTTTCAATCTC+TGG | - | chr4_3:56026415-56026434 | Msa0649380:CDS | 35.0% | |
| TTAAATGATGTCAAGAGGCA+TGG | - | chr4_3:56026695-56026714 | Msa0649380:intron | 35.0% | |
| TACTAGACTGACTACCATAT+TGG | - | chr4_3:56026801-56026820 | Msa0649380:intron | 35.0% | |
| TTCCAAACCCAGAAAATAGA+AGG | - | chr4_3:56026856-56026875 | Msa0649380:intron | 35.0% | |
| ! | TTCCTTCTATTTTCTGGGTT+TGG | + | chr4_3:56026861-56026880 | None:intergenic | 35.0% |
| ! | GAATTCTTGGATTTTGCCTT+GGG | - | chr4_3:56026878-56026897 | Msa0649380:intron | 35.0% |
| ! | AATTCTTGGATTTTGCCTTG+GGG | - | chr4_3:56026879-56026898 | Msa0649380:intron | 35.0% |
| ! | GCTTTTATGCATAACTCTTC+GGG | - | chr4_3:56026907-56026926 | Msa0649380:intron | 35.0% |
| TGCTAAATCATAGGCACATT+GGG | - | chr4_3:56026990-56027009 | Msa0649380:intron | 35.0% | |
| ! | CTATGTGACATGTATTGGTA+AGG | - | chr4_3:56027065-56027084 | Msa0649380:intron | 35.0% |
| AGAGTCCCTAAAGTAATGAA+GGG | - | chr4_3:56027191-56027210 | Msa0649380:intron | 35.0% | |
| CAAGAATGAAAATCCAAGTG+TGG | - | chr4_3:56027316-56027335 | Msa0649380:intron | 35.0% | |
| AATCCAAGTGTGGTATTAGT+AGG | - | chr4_3:56027326-56027345 | Msa0649380:intron | 35.0% | |
| GTATTAGTAGGACATAGTCT+AGG | - | chr4_3:56027338-56027357 | Msa0649380:intron | 35.0% | |
| GGAACAAAGCTTTCAATGAT+AGG | - | chr4_3:56027456-56027475 | Msa0649380:intron | 35.0% | |
| GATCTTATACCACATTATCC+AGG | - | chr4_3:56027527-56027546 | Msa0649380:intron | 35.0% | |
| AATAACTTCCCTGGATAATG+TGG | + | chr4_3:56027539-56027558 | None:intergenic | 35.0% | |
| ACATTATCCAGGGAAGTTAT+TGG | - | chr4_3:56027538-56027557 | Msa0649380:intron | 35.0% | |
| CATTATCCAGGGAAGTTATT+GGG | - | chr4_3:56027539-56027558 | Msa0649380:intron | 35.0% | |
| ATTATCCAGGGAAGTTATTG+GGG | - | chr4_3:56027540-56027559 | Msa0649380:intron | 35.0% | |
| TTATTGGGGTATGAGTATAC+TGG | - | chr4_3:56027554-56027573 | Msa0649380:intron | 35.0% | |
| TATTGGGGTATGAGTATACT+GGG | - | chr4_3:56027555-56027574 | Msa0649380:intron | 35.0% | |
| ATTCGAAGAATCCAAGTGAT+TGG | - | chr4_3:56027621-56027640 | Msa0649380:CDS | 35.0% | |
| TGCAAATTATGCCAATCACT+TGG | + | chr4_3:56027635-56027654 | None:intergenic | 35.0% | |
| ! | GAATAAAGGTATGGTGTGTA+GGG | - | chr4_3:56027799-56027818 | Msa0649380:CDS | 35.0% |
| ATACAGAGTCAATACTCTTC+AGG | + | chr4_3:56027872-56027891 | None:intergenic | 35.0% | |
| TGACTCTGTATATGCCTATA+AGG | - | chr4_3:56027881-56027900 | Msa0649380:CDS | 35.0% | |
| TGTTATACAGCATGGTAACA+TGG | + | chr4_3:56027913-56027932 | None:intergenic | 35.0% | |
| CAGTACAATGTTATACAGCA+TGG | + | chr4_3:56027921-56027940 | None:intergenic | 35.0% | |
| GTATTTCATAAGCTATTGCC+TGG | - | chr4_3:56028053-56028072 | Msa0649380:CDS | 35.0% | |
| ACTCTCAAAACTATAGAACC+AGG | + | chr4_3:56028074-56028093 | None:intergenic | 35.0% | |
| TGTTATACAGCATGGTAACA+TGG | + | chr4_3:56027913-56027932 | None:intergenic | 35.0% | |
| CAGTACAATGTTATACAGCA+TGG | + | chr4_3:56027921-56027940 | None:intergenic | 35.0% | |
| GTATTTCATAAGCTATTGCC+TGG | - | chr4_3:56028053-56028072 | Msa0649380:CDS | 35.0% | |
| ACTCTCAAAACTATAGAACC+AGG | + | chr4_3:56028074-56028093 | None:intergenic | 35.0% | |
| GGGAGTGGATATATATTGTG+AGG | + | chr4_3:56025381-56025400 | None:intergenic | 40.0% | |
| TGTTAAAGTGAGTGAGTGAG+CGG | + | chr4_3:56025420-56025439 | None:intergenic | 40.0% | |
| CTCACTCACTCACTTTAACA+TGG | - | chr4_3:56025420-56025439 | Msa0649380:three_prime_UTR | 40.0% | |
| AGCACACAAAAAAACTCCCT+TGG | - | chr4_3:56025447-56025466 | Msa0649380:three_prime_UTR | 40.0% | |
| CAAAAAAACTCCCTTGGACA+TGG | - | chr4_3:56025453-56025472 | Msa0649380:three_prime_UTR | 40.0% | |
| !! | ATTTTTGTTGGTTGTGGTGG+TGG | + | chr4_3:56025508-56025527 | None:intergenic | 40.0% |
| ! | AGAGTTGGTTCCATGTTTCT+TGG | + | chr4_3:56025534-56025553 | None:intergenic | 40.0% |
| GAAACATGGAACCAACTCTT+AGG | - | chr4_3:56025535-56025554 | Msa0649380:three_prime_UTR | 40.0% | |
| GACCAAAACTCTATCTACTG+CGG | - | chr4_3:56025664-56025683 | Msa0649380:three_prime_UTR | 40.0% | |
| ! | AACCGCAGTAGATAGAGTTT+TGG | + | chr4_3:56025669-56025688 | None:intergenic | 40.0% |
| ACACAACAGTGTAGTGTGTA+GGG | + | chr4_3:56025741-56025760 | None:intergenic | 40.0% | |
| AACCAATCCAGTTAGACTCA+CGG | + | chr4_3:56025840-56025859 | None:intergenic | 40.0% | |
| GAAATATATGTTGTGTGGCG+TGG | - | chr4_3:56025907-56025926 | Msa0649380:CDS | 40.0% | |
| CCTTATTATTCTTGTCTGGG+AGG | + | chr4_3:56026026-56026045 | None:intergenic | 40.0% | |
| CCTCCCAGACAAGAATAATA+AGG | - | chr4_3:56026023-56026042 | Msa0649380:CDS | 40.0% | |
| CATACTTAAACCGAGTTTGG+GGG | - | chr4_3:56026110-56026129 | Msa0649380:CDS | 40.0% | |
| CATTAACATGGTGTGACAGA+AGG | - | chr4_3:56026364-56026383 | Msa0649380:CDS | 40.0% | |
| TTAACATGGTGTGACAGAAG+GGG | - | chr4_3:56026366-56026385 | Msa0649380:CDS | 40.0% | |
| ATGGCATGAGTTCACCAATA+TGG | + | chr4_3:56026818-56026837 | None:intergenic | 40.0% | |
| ! | GGAATTCTTGGATTTTGCCT+TGG | - | chr4_3:56026877-56026896 | Msa0649380:intron | 40.0% |
| GTGCTAAATCATAGGCACAT+TGG | - | chr4_3:56026989-56027008 | Msa0649380:intron | 40.0% | |
| GTGTCACATTCGCATCTATA+TGG | + | chr4_3:56027033-56027052 | None:intergenic | 40.0% | |
| GAGAGTCCCTAAAGTAATGA+AGG | - | chr4_3:56027190-56027209 | Msa0649380:intron | 40.0% | |
| TCCCTAAAGTAATGAAGGGT+TGG | - | chr4_3:56027195-56027214 | Msa0649380:intron | 40.0% | |
| GCCAACCCTTCATTACTTTA+GGG | + | chr4_3:56027199-56027218 | None:intergenic | 40.0% | |
| AGCCAACCCTTCATTACTTT+AGG | + | chr4_3:56027200-56027219 | None:intergenic | 40.0% | |
| !!! | CTGACGCTTGTTTTTGTGAA+AGG | + | chr4_3:56027254-56027273 | None:intergenic | 40.0% |
| AAAAACAAGCGTCAGAACAC+AGG | - | chr4_3:56027259-56027278 | Msa0649380:intron | 40.0% | |
| TGTCCTACTAATACCACACT+TGG | + | chr4_3:56027332-56027351 | None:intergenic | 40.0% | |
| !!! | TGTGAGTGCTTTTGATTTGG+TGG | - | chr4_3:56027376-56027395 | Msa0649380:intron | 40.0% |
| !!! | GCTTTTGATTTGGTGGAGAA+TGG | - | chr4_3:56027383-56027402 | Msa0649380:intron | 40.0% |
| !! | AAGCTTTGTTCCCAACTTGT+GGG | + | chr4_3:56027448-56027467 | None:intergenic | 40.0% |
| !! | AAAGCTTTGTTCCCAACTTG+TGG | + | chr4_3:56027449-56027468 | None:intergenic | 40.0% |
| GCAAGCTATGTTGCATATTG+TGG | - | chr4_3:56027652-56027671 | Msa0649380:CDS | 40.0% | |
| ! | ATATTGTGGCTGGTTGGAAT+GGG | - | chr4_3:56027666-56027685 | Msa0649380:CDS | 40.0% |
| ! | CGAATAAAGGTATGGTGTGT+AGG | - | chr4_3:56027798-56027817 | Msa0649380:CDS | 40.0% |
| TGTTTACAAGCTCACACCAA+AGG | + | chr4_3:56028349-56028368 | None:intergenic | 40.0% | |
| !! | TGAGTGTGTTATTTGGGGAG+TGG | + | chr4_3:56025396-56025415 | None:intergenic | 45.0% |
| !! | AGCGGGTGAGTGTGTTATTT+GGG | + | chr4_3:56025402-56025421 | None:intergenic | 45.0% |
| GTTAAAGTGAGTGAGTGAGC+GGG | + | chr4_3:56025419-56025438 | None:intergenic | 45.0% | |
| GTCGTTGTTAAAGGAGTCGT+AGG | + | chr4_3:56025647-56025666 | None:intergenic | 45.0% | |
| GACACAACAGTGTAGTGTGT+AGG | + | chr4_3:56025742-56025761 | None:intergenic | 45.0% | |
| ACTCACTTTCACGTGAGAGT+TGG | - | chr4_3:56025812-56025831 | Msa0649380:CDS | 45.0% | |
| CTCACTTTCACGTGAGAGTT+GGG | - | chr4_3:56025813-56025832 | Msa0649380:CDS | 45.0% | |
| TCGCTGTTAGTTCCGATGAA+CGG | - | chr4_3:56025863-56025882 | Msa0649380:CDS | 45.0% | |
| CAACTCTCTACTCCGTTCAT+CGG | + | chr4_3:56025878-56025897 | None:intergenic | 45.0% | |
| GATGAACGGAGTAGAGAGTT+GGG | - | chr4_3:56025877-56025896 | Msa0649380:CDS | 45.0% | |
| CAAACACGTTAATCCACTCC+AGG | + | chr4_3:56025945-56025964 | None:intergenic | 45.0% | |
| !! | CTGGAGTGGATTAACGTGTT+TGG | - | chr4_3:56025943-56025962 | Msa0649380:CDS | 45.0% |
| CATACAAACTCCCCCAAACT+CGG | + | chr4_3:56026123-56026142 | None:intergenic | 45.0% | |
| TGACAGAAGGGGTAGATGTT+TGG | - | chr4_3:56026377-56026396 | Msa0649380:CDS | 45.0% | |
| GACAGAAGGGGTAGATGTTT+GGG | - | chr4_3:56026378-56026397 | Msa0649380:CDS | 45.0% | |
| ATTGGTGAACTCATGCCATG+TGG | - | chr4_3:56026819-56026838 | Msa0649380:intron | 45.0% | |
| CTCATGCCATGTGGTGTATA+CGG | - | chr4_3:56026828-56026847 | Msa0649380:intron | 45.0% | |
| !! | AAAGTGCCGTATACACCACA+TGG | + | chr4_3:56026837-56026856 | None:intergenic | 45.0% |
| !! | GCATAAAAGCATTTGCCCCA+AGG | + | chr4_3:56026897-56026916 | None:intergenic | 45.0% |
| !! | CATAACTCTTCGGGTTGATC+TGG | - | chr4_3:56026916-56026935 | Msa0649380:intron | 45.0% |
| ACACTAGCTAATAGTCCTCC+TGG | - | chr4_3:56026967-56026986 | Msa0649380:intron | 45.0% | |
| ! | TCCTCCTGGTGCTAAATCAT+AGG | - | chr4_3:56026981-56027000 | Msa0649380:intron | 45.0% |
| TGTGCCTATGATTTAGCACC+AGG | + | chr4_3:56026988-56027007 | None:intergenic | 45.0% | |
| CCAAACACAAATGCAGCAAC+GGG | + | chr4_3:56027422-56027441 | None:intergenic | 45.0% | |
| CCCAAACACAAATGCAGCAA+CGG | + | chr4_3:56027423-56027442 | None:intergenic | 45.0% | |
| CCGTTGCTGCATTTGTGTTT+GGG | - | chr4_3:56027420-56027439 | Msa0649380:intron | 45.0% | |
| !! | AGCTTTGTTCCCAACTTGTG+GGG | + | chr4_3:56027447-56027466 | None:intergenic | 45.0% |
| TCATACCCCAATAACTTCCC+TGG | + | chr4_3:56027548-56027567 | None:intergenic | 45.0% | |
| TGAGTATACTGGGACAGAGT+TGG | - | chr4_3:56027565-56027584 | Msa0649380:CDS | 45.0% | |
| GCTATGTTGCATATTGTGGC+TGG | - | chr4_3:56027656-56027675 | Msa0649380:CDS | 45.0% | |
| TGTTGCATATTGTGGCTGGT+TGG | - | chr4_3:56027660-56027679 | Msa0649380:CDS | 45.0% | |
| ! | CATATTGTGGCTGGTTGGAA+TGG | - | chr4_3:56027665-56027684 | Msa0649380:CDS | 45.0% |
| ! | AGTTTGAGGTGAAGGTGAAG+AGG | - | chr4_3:56027699-56027718 | Msa0649380:CDS | 45.0% |
| GGTTGCGACGAATAAAGGTA+TGG | - | chr4_3:56027790-56027809 | Msa0649380:CDS | 45.0% | |
| ! | TAAAGGTATGGTGTGTAGGG+AGG | - | chr4_3:56027802-56027821 | Msa0649380:CDS | 45.0% |
| AGTCAATACTCTTCAGGCAC+AGG | + | chr4_3:56027866-56027885 | None:intergenic | 45.0% | |
| ATAGGCTCACACCAAAGGTT+TGG | + | chr4_3:56028112-56028131 | None:intergenic | 45.0% | |
| ! | ACCTTTGGTGTGAGCCTATA+AGG | - | chr4_3:56028113-56028132 | Msa0649380:CDS | 45.0% |
| TCCTTATAGGCTCACACCAA+AGG | + | chr4_3:56028117-56028136 | None:intergenic | 45.0% | |
| ACAAGCTCACACCAAAGGTT+TGG | + | chr4_3:56028344-56028363 | None:intergenic | 45.0% | |
| GATGAGGGAAGGGAAGTTTG+TGG | + | chr4_3:56025354-56025373 | None:intergenic | 50.0% | |
| !! | GTGAGGAGTTGATGAGGGAA+GGG | + | chr4_3:56025364-56025383 | None:intergenic | 50.0% |
| !! | TGTGAGGAGTTGATGAGGGA+AGG | + | chr4_3:56025365-56025384 | None:intergenic | 50.0% |
| !! | GCGGGTGAGTGTGTTATTTG+GGG | + | chr4_3:56025401-56025420 | None:intergenic | 50.0% |
| ! | GAGCGGGTGAGTGTGTTATT+TGG | + | chr4_3:56025403-56025422 | None:intergenic | 50.0% |
| GTGTCTGTTGCCATGTCCAA+GGG | + | chr4_3:56025466-56025485 | None:intergenic | 50.0% | |
| TGTGTCTGTTGCCATGTCCA+AGG | + | chr4_3:56025467-56025486 | None:intergenic | 50.0% | |
| TGCGGAGATTGAGGTCTAGT+GGG | + | chr4_3:56025588-56025607 | None:intergenic | 50.0% | |
| TTGCGGAGATTGAGGTCTAG+TGG | + | chr4_3:56025589-56025608 | None:intergenic | 50.0% | |
| GTATGAAGTCACCACAACGG+AGG | + | chr4_3:56025618-56025637 | None:intergenic | 50.0% | |
| TACTGCGGTTCAAGCCGTTA+TGG | - | chr4_3:56025679-56025698 | Msa0649380:three_prime_UTR | 50.0% | |
| GACCGTGAGTCTAACTGGAT+TGG | - | chr4_3:56025835-56025854 | Msa0649380:CDS | 50.0% | |
| CGATGAACGGAGTAGAGAGT+TGG | - | chr4_3:56025876-56025895 | Msa0649380:CDS | 50.0% | |
| TTGTGTGGCGTGGTACTACT+AGG | - | chr4_3:56025917-56025936 | Msa0649380:CDS | 50.0% | |
| TGTGTGGCGTGGTACTACTA+GGG | - | chr4_3:56025918-56025937 | Msa0649380:CDS | 50.0% | |
| ! | TGATGTCAAGAGGCATGGCT+AGG | - | chr4_3:56026700-56026719 | Msa0649380:intron | 50.0% |
| ! | AAGAGGCATGGCTAGGATGA+TGG | - | chr4_3:56026707-56026726 | Msa0649380:intron | 50.0% |
| GCCTATGATTTAGCACCAGG+AGG | + | chr4_3:56026985-56027004 | None:intergenic | 50.0% | |
| !! | AGGAGATTTTGGGTCGTCTG+AGG | + | chr4_3:56027234-56027253 | None:intergenic | 50.0% |
| CCCGTTGCTGCATTTGTGTT+TGG | - | chr4_3:56027419-56027438 | Msa0649380:intron | 50.0% | |
| TGTTTGGGTCCCCACAAGTT+GGG | - | chr4_3:56027435-56027454 | Msa0649380:intron | 50.0% | |
| CTGGTTGGAATGGGAGTGAT+GGG | - | chr4_3:56027675-56027694 | Msa0649380:CDS | 50.0% | |
| TGGTTGGAATGGGAGTGATG+GGG | - | chr4_3:56027676-56027695 | Msa0649380:CDS | 50.0% | |
| ! | TGATGGGGAGTTTGAGGTGA+AGG | - | chr4_3:56027691-56027710 | Msa0649380:CDS | 50.0% |
| GGTGAAGGTGAAGAGGAGTT+TGG | - | chr4_3:56027706-56027725 | Msa0649380:CDS | 50.0% | |
| !! | TGGTGGGTTGCGACGAATAA+AGG | - | chr4_3:56027785-56027804 | Msa0649380:CDS | 50.0% |
| GTATGGTGTGTAGGGAGGAT+GGG | - | chr4_3:56027807-56027826 | Msa0649380:CDS | 50.0% | |
| TATGGTGTGTAGGGAGGATG+GGG | - | chr4_3:56027808-56027827 | Msa0649380:CDS | 50.0% | |
| !! | ATGGGTTGATGCACCAGAGA+AGG | - | chr4_3:56027832-56027851 | Msa0649380:CDS | 50.0% |
| AATACTCTTCAGGCACAGGC+AGG | + | chr4_3:56027862-56027881 | None:intergenic | 50.0% | |
| GGATGAGGTTGCGGAGATTG+AGG | + | chr4_3:56025597-56025616 | None:intergenic | 55.0% | |
| CACAACGGAGGATGAGGTTG+CGG | + | chr4_3:56025606-56025625 | None:intergenic | 55.0% | |
| AGTCACCACAACGGAGGATG+AGG | + | chr4_3:56025612-56025631 | None:intergenic | 55.0% | |
| GTTGGGACCGTGAGTCTAAC+TGG | - | chr4_3:56025830-56025849 | Msa0649380:CDS | 55.0% | |
| GTACTACTAGGGACCTGGAG+TGG | - | chr4_3:56025929-56025948 | Msa0649380:CDS | 55.0% | |
| ! | AGGCATGGCTAGGATGATGG+TGG | - | chr4_3:56026710-56026729 | Msa0649380:intron | 55.0% |
| ! | GGCATGGCTAGGATGATGGT+GGG | - | chr4_3:56026711-56026730 | Msa0649380:intron | 55.0% |
| ! | GCATGGCTAGGATGATGGTG+GGG | - | chr4_3:56026712-56026731 | Msa0649380:intron | 55.0% |
| TAGCAGCAGCAGTGACGATG+AGG | - | chr4_3:56027160-56027179 | Msa0649380:intron | 55.0% | |
| GTGTTTGGGTCCCCACAAGT+TGG | - | chr4_3:56027434-56027453 | Msa0649380:intron | 55.0% | |
| GCTGGTTGGAATGGGAGTGA+TGG | - | chr4_3:56027674-56027693 | Msa0649380:CDS | 55.0% | |
| ! | TGGGAGTGATGGGGAGTTTG+AGG | - | chr4_3:56027685-56027704 | Msa0649380:CDS | 55.0% |
| !! | GAAGGAAGAGTGTCACGTGC+CGG | - | chr4_3:56027757-56027776 | Msa0649380:CDS | 55.0% |
| GGTATGGTGTGTAGGGAGGA+TGG | - | chr4_3:56027806-56027825 | Msa0649380:CDS | 55.0% | |
| TGTGTAGGGAGGATGGGGAA+TGG | - | chr4_3:56027813-56027832 | Msa0649380:CDS | 55.0% | |
| GTGTAGGGAGGATGGGGAAT+GGG | - | chr4_3:56027814-56027833 | Msa0649380:CDS | 55.0% | |
| ! | GGTTGATGCACCAGAGAAGG+AGG | - | chr4_3:56027835-56027854 | Msa0649380:CDS | 55.0% |
| CGCAACCTCATCCTCCGTTG+TGG | - | chr4_3:56025604-56025623 | Msa0649380:three_prime_UTR | 60.0% | |
| GCGTGGTACTACTAGGGACC+TGG | - | chr4_3:56025924-56025943 | Msa0649380:CDS | 60.0% | |
| ACAGGCAGGTCCTCCTTCTC+TGG | + | chr4_3:56027848-56027867 | None:intergenic | 60.0% | |
| ! | AGTGTCACGTGCCGGCGTCA+TGG | - | chr4_3:56027765-56027784 | Msa0649380:CDS | 65.0% |
| ! | TCACGTGCCGGCGTCATGGT+GGG | - | chr4_3:56027769-56027788 | Msa0649380:CDS | 65.0% |
| GTCGCAACCCACCATGACGC+CGG | + | chr4_3:56027779-56027798 | None:intergenic | 65.0% | |
| ! | GTCACGTGCCGGCGTCATGG+TGG | - | chr4_3:56027768-56027787 | Msa0649380:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 56025241 | 56028369 | 56025241 | ID=Msa0649380;Name=Msa0649380 |
| chr4_3 | mRNA | 56025241 | 56028369 | 56025241 | ID=Msa0649380-mRNA-1;Parent=Msa0649380;Name=Msa0649380-mRNA-1;_AED=0.02;_eAED=0.02;_QI=198|1|1|1|1|1|2|486|445 |
| chr4_3 | exon | 56025241 | 56026457 | 56025241 | ID=Msa0649380-mRNA-1:exon:14498;Parent=Msa0649380-mRNA-1 |
| chr4_3 | exon | 56027565 | 56028369 | 56027565 | ID=Msa0649380-mRNA-1:exon:14497;Parent=Msa0649380-mRNA-1 |
| chr4_3 | five_prime_UTR | 56028172 | 56028369 | 56028172 | ID=Msa0649380-mRNA-1:five_prime_utr;Parent=Msa0649380-mRNA-1 |
| chr4_3 | CDS | 56027565 | 56028171 | 56027565 | ID=Msa0649380-mRNA-1:cds;Parent=Msa0649380-mRNA-1 |
| chr4_3 | CDS | 56025727 | 56026457 | 56025727 | ID=Msa0649380-mRNA-1:cds;Parent=Msa0649380-mRNA-1 |
| chr4_3 | three_prime_UTR | 56025241 | 56025726 | 56025241 | ID=Msa0649380-mRNA-1:three_prime_utr;Parent=Msa0649380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
