AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0043940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0043940 MtrunA17_Chr1g0209861 96.330 436 16 0 1 436 1 436 0.0 872
Msa0043940 MtrunA17_Chr8g0390971 41.372 452 188 18 9 433 11 412 2.67e-82 259
Msa0043940 MtrunA17_Chr5g0431351 44.144 111 42 3 316 424 124 216 4.72e-19 85.5
Msa0043940 MtrunA17_Chr7g0226451 40.152 132 56 4 316 424 220 351 4.58e-17 82.4
Msa0043940 MtrunA17_Chr4g0071811 46.154 104 44 4 321 424 293 384 5.21e-17 82.4
Msa0043940 MtrunA17_Chr1g0150471 47.561 82 36 2 351 427 221 300 1.97e-12 67.8
Msa0043940 MtrunA17_Chr3g0136701 63.636 55 16 1 370 424 224 274 3.65e-12 66.6
Msa0043940 MtrunA17_Chr7g0220721 69.767 43 13 0 382 424 327 369 7.73e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0043940 AT1G25440.1 45.622 434 188 10 6 424 3 403 7.23e-103 312
Msa0043940 AT1G68520.1 44.018 443 188 16 6 429 3 404 3.08e-91 282
Msa0043940 AT1G73870.1 38.149 443 190 19 8 427 9 390 4.02e-65 214
Msa0043940 AT4G25990.1 49.533 107 38 3 318 424 293 383 8.99e-22 97.1
Msa0043940 AT5G57180.2 45.217 115 43 3 318 431 337 432 2.66e-21 96.3
Msa0043940 AT1G49130.1 40.164 122 65 3 15 128 23 144 2.88e-19 89.0
Msa0043940 AT1G49130.1 45.794 107 37 3 319 425 236 321 7.29e-17 81.6
Msa0043940 AT1G49130.2 40.164 122 65 3 15 128 16 137 3.01e-19 88.6
Msa0043940 AT1G49130.2 45.794 107 37 3 319 425 229 314 9.55e-17 81.3
Msa0043940 AT4G25990.2 43.443 122 38 4 318 424 293 398 2.83e-18 87.0
Msa0043940 AT5G14370.1 38.028 142 73 4 291 424 202 336 5.08e-18 85.5
Msa0043940 AT4G25990.3 47.525 101 37 3 318 418 293 377 5.11e-18 85.9
Msa0043940 AT1G07050.1 43.750 128 45 5 303 426 91 195 2.02e-17 80.9
Msa0043940 AT5G57180.1 45.098 102 36 3 318 418 337 419 8.05e-17 82.4
Msa0043940 AT1G07050.2 41.667 120 43 5 303 418 91 187 5.02e-13 68.2
Msa0043940 AT5G24930.1 52.113 71 28 1 360 424 267 337 1.28e-11 66.2
Msa0043940 AT5G15840.1 52.308 65 28 2 1 62 41 105 8.45e-11 63.9

Find 106 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGGTGTTCTTGCCTTCT+TGG 0.140899 1_1:-75417322 None:intergenic
GAAGAATTCATCACCATTAA+TGG 0.149936 1_1:-75417274 None:intergenic
ACAAATCTCCCTTTCATTCT+TGG 0.172964 1_1:-75418694 None:intergenic
ATTATTTATCAGGGAACTTT+TGG 0.202916 1_1:+75418502 Msa0043940:intron
TGAAAATAATGATTATAATA+AGG 0.203891 1_1:+75417980 Msa0043940:CDS
TGAACTTTGAAATATGAATT+TGG 0.207298 1_1:-75416996 None:intergenic
TTCTCATCAGCATCCAAATT+TGG 0.222169 1_1:-75418092 None:intergenic
ATTTGCTAAAAGTAATAATT+TGG 0.227746 1_1:+75418814 Msa0043940:three_prime_UTR
TTTCATCTTGTGCCGGATTT+AGG 0.234999 1_1:+75417411 Msa0043940:CDS
TGGTTTGAGTGAAACTTTAT+TGG 0.235328 1_1:+75418905 Msa0043940:three_prime_UTR
TTGTTAACACCTGACAAATT+AGG 0.244804 1_1:-75416960 None:intergenic
TATGGTGAGTTTGGTGGATA+TGG 0.250845 1_1:+75418544 Msa0043940:CDS
ATGAAGCGCAACTTCTTTAC+AGG 0.254107 1_1:+75417469 Msa0043940:CDS
TAATGGTGACAAGCCAAATT+TGG 0.271510 1_1:+75418079 Msa0043940:CDS
CTGCCTCCATCTACCGTTAC+TGG 0.277791 1_1:-75418574 None:intergenic
GAAAATAATGATTATAATAA+GGG 0.279237 1_1:+75417981 Msa0043940:CDS
GCGTCGTACAAGTCCATTAA+TGG 0.290118 1_1:+75417261 Msa0043940:CDS
ACGGAGGTTCATTATGCTTA+TGG 0.290853 1_1:+75418526 Msa0043940:CDS
CTCAACATCAGCTGCAAATT+CGG 0.302034 1_1:-75417703 None:intergenic
GCAACAGAAGGATCGAAAAT+TGG 0.331767 1_1:-75417495 None:intergenic
CATTATGCTTATGGTGAGTT+TGG 0.336402 1_1:+75418535 Msa0043940:CDS
TTCTTGGTGAAGCCAGAAAA+AGG 0.344434 1_1:-75417306 None:intergenic
GGTTGTTCTCAAAGAAAATA+AGG 0.347288 1_1:+75418638 Msa0043940:CDS
TTCCCTTCACCTAATTTGTC+AGG 0.352541 1_1:+75416951 Msa0043940:five_prime_UTR
GATTAGAAAATGAGTGTATA+GGG 0.361641 1_1:+75417742 Msa0043940:CDS
CATTAGTCCAGGGACACTTT+TGG 0.361781 1_1:-75418061 None:intergenic
AGCTGATGTTGAGAGCTTAT+TGG 0.374691 1_1:+75417713 Msa0043940:CDS
AGAAAATAAGGTACGAGGTT+AGG 0.382846 1_1:+75418650 Msa0043940:CDS
GGATTAGAAAATGAGTGTAT+AGG 0.385257 1_1:+75417741 Msa0043940:CDS
GCTGATGTTGAGAGCTTATT+GGG 0.387062 1_1:+75417714 Msa0043940:CDS
CAAAAGTGTCCCTGGACTAA+TGG 0.395385 1_1:+75418062 Msa0043940:CDS
ATTCCTCGCTGGTTCGCTGC+TGG 0.398768 1_1:-75417373 None:intergenic
TGTCATCCAGTAACGGTAGA+TGG 0.408098 1_1:+75418568 Msa0043940:CDS
CTCTCATTGTATTTAACATC+AGG 0.418189 1_1:-75417597 None:intergenic
GGAGATAATATGATGGAGAT+TGG 0.419606 1_1:+75417870 Msa0043940:CDS
GAAGGCAAGAACACCAAGAC+AGG 0.424009 1_1:+75417326 Msa0043940:CDS
TAGGGAGAGGAAAAGGGAAA+AGG 0.427942 1_1:-75416917 None:intergenic
GCAGAGAGGCAAGGGTTTCA+AGG 0.431755 1_1:+75418593 Msa0043940:CDS
TGTATAGGGATGGAAGAGTT+GGG 0.440723 1_1:+75417756 Msa0043940:CDS
ATAAATTATACCATGCAATC+AGG 0.445629 1_1:-75418119 None:intergenic
GATTTGTGTTTCCCCTGTCT+TGG 0.455579 1_1:-75417339 None:intergenic
TGAAAGGGAGATTTGTGAAG+AGG 0.460030 1_1:+75418701 Msa0043940:CDS
ATTTGGATGCTGATGAGAAC+TGG 0.465263 1_1:+75418096 Msa0043940:CDS
GTGTATAGGGATGGAAGAGT+TGG 0.474392 1_1:+75417755 Msa0043940:CDS
TGGCTTGTCACCATTAGTCC+AGG 0.479305 1_1:-75418072 None:intergenic
AAATCCGGCACAAGATGAAA+CGG 0.483022 1_1:-75417408 None:intergenic
AGTGAGAAGTGGAAGTGTAG+TGG 0.486251 1_1:+75417804 Msa0043940:CDS
CCTTCAGTTGGTTCAACTGA+AGG 0.490709 1_1:+75417537 Msa0043940:CDS
GTTGAGAGCTTATTGGGTAG+GGG 0.493508 1_1:+75417720 Msa0043940:CDS
TGTACTAGTCCTCCTTCAGT+TGG 0.493939 1_1:+75417525 Msa0043940:CDS
CTGTTGGAGGCAAAACTGCT+AGG 0.494037 1_1:+75417100 Msa0043940:CDS
AGTGGAAAGGTGAAGGAAGA+AGG 0.494618 1_1:+75417822 Msa0043940:CDS
TGTTGAGAGCTTATTGGGTA+GGG 0.498854 1_1:+75417719 Msa0043940:CDS
TATGCTTATGGTGAGTTTGG+TGG 0.509644 1_1:+75418538 Msa0043940:CDS
AGAGAGCTATGAAATTGTTG+AGG 0.512413 1_1:+75417848 Msa0043940:CDS
AGATGGAGGCAGAGAGGCAA+GGG 0.513332 1_1:+75418585 Msa0043940:CDS
GAAAGGGAGATTTGTGAAGA+GGG 0.514753 1_1:+75418702 Msa0043940:CDS
GAGAAGAGACCAAGAATGAA+AGG 0.514881 1_1:+75418685 Msa0043940:CDS
ATATTATTATTATTCCTCGC+TGG 0.519712 1_1:-75417384 None:intergenic
GAGAGCTATGAAATTGTTGA+GGG 0.520749 1_1:+75417849 Msa0043940:CDS
GGGATAGCCAAAAGTGTCCC+TGG 0.521182 1_1:+75418054 Msa0043940:CDS
AATCCGGCACAAGATGAAAC+GGG 0.522679 1_1:-75417407 None:intergenic
ATGTTGAGAGCTTATTGGGT+AGG 0.523810 1_1:+75417718 Msa0043940:CDS
GGTTCAACTGAAGGAGGACT+AGG 0.524616 1_1:+75417546 Msa0043940:CDS
ACTTCATCGAAACCTAAATC+CGG 0.535576 1_1:-75417423 None:intergenic
CACCTGACAAATTAGGTGAA+GGG 0.550785 1_1:-75416953 None:intergenic
TGAAACACTTGAAGAGGTGA+AGG 0.552820 1_1:+75417938 Msa0043940:CDS
AACGTAGCAAACGCTGTTGG+AGG 0.555203 1_1:+75417087 Msa0043940:CDS
GAAGAGGTGAAGGAGAAGTG+TGG 0.556028 1_1:+75417948 Msa0043940:CDS
CCTCGCTGGTTCGCTGCTGG+AGG 0.557584 1_1:-75417370 None:intergenic
TTCTCATGAAACACTTGAAG+AGG 0.559028 1_1:+75417932 Msa0043940:CDS
ATGATGCAGTAATCATTGCA+TGG 0.567325 1_1:+75418033 Msa0043940:CDS
TCGGCTAATTCAATATCAGA+TGG 0.569236 1_1:-75417684 None:intergenic
AGAAGAGACCAAGAATGAAA+GGG 0.570209 1_1:+75418686 Msa0043940:CDS
GAAGTGTAGTGGAAAGGTGA+AGG 0.573136 1_1:+75417815 Msa0043940:CDS
TGATGCAGTAATCATTGCAT+GGG 0.576146 1_1:+75418034 Msa0043940:CDS
AGCATGAGGAGAGTGAGAAG+TGG 0.578354 1_1:+75417793 Msa0043940:CDS
TAGATGGAGGCAGAGAGGCA+AGG 0.578587 1_1:+75418584 Msa0043940:CDS
GGCTTGTCACCATTAGTCCA+GGG 0.579867 1_1:-75418071 None:intergenic
TGTTGAGGGAGATAATATGA+TGG 0.580179 1_1:+75417863 Msa0043940:CDS
AAAATAATGATTATAATAAG+GGG 0.580910 1_1:+75417982 Msa0043940:CDS
TGTTGGAGGCAAAACTGCTA+GGG 0.581207 1_1:+75417101 Msa0043940:CDS
TATCCCGTTTCATCTTGTGC+CGG 0.584262 1_1:+75417404 Msa0043940:CDS
TCAGTTGGTTCAACTGAAGG+AGG 0.585447 1_1:+75417540 Msa0043940:CDS
ACACCTGACAAATTAGGTGA+AGG 0.585651 1_1:-75416954 None:intergenic
AGAAAATGAGTGTATAGGGA+TGG 0.586862 1_1:+75417746 Msa0043940:CDS
GGTGATGAATTCTTCAATTG+TGG 0.591451 1_1:+75417282 Msa0043940:CDS
AGGAAATGTTGGAACTGCAA+AGG 0.601959 1_1:-75418728 None:intergenic
CCTTCAGTTGAACCAACTGA+AGG 0.603328 1_1:-75417537 None:intergenic
TGAGAACTGGCCTGATTGCA+TGG 0.605682 1_1:+75418109 Msa0043940:CDS
TCAGTTGAACCAACTGAAGG+AGG 0.611596 1_1:-75417534 None:intergenic
ATTGATTGATACAAAGCATG+AGG 0.625826 1_1:+75417779 Msa0043940:CDS
TAGTGATAATAATTATGAGA+TGG 0.628845 1_1:+75417641 Msa0043940:CDS
TGAAGCGCAACTTCTTTACA+GGG 0.630911 1_1:+75417470 Msa0043940:CDS
GTACATAATTCAGCAACAGA+AGG 0.631423 1_1:-75417507 None:intergenic
CTCAAAGAAAATAAGGTACG+AGG 0.632554 1_1:+75418645 Msa0043940:CDS
AACGGTAGATGGAGGCAGAG+AGG 0.643178 1_1:+75418579 Msa0043940:CDS
ACAGAGAAAAGCGAAGAACA+AGG 0.643427 1_1:+75418617 Msa0043940:CDS
AGGCAAGAACACCAAGACAG+GGG 0.648532 1_1:+75417328 Msa0043940:CDS
GAAGTGGAAGTGTAGTGGAA+AGG 0.652932 1_1:+75417809 Msa0043940:CDS
AAGGCAAGAACACCAAGACA+GGG 0.653824 1_1:+75417327 Msa0043940:CDS
ATATGGATGTCATCCAGTAA+CGG 0.662808 1_1:+75418561 Msa0043940:CDS
AACTGAAGGAGGACTAGGAG+CGG 0.667542 1_1:+75417551 Msa0043940:CDS
CATCCAGTAACGGTAGATGG+AGG 0.676181 1_1:+75418571 Msa0043940:CDS
CCTCCAGCAGCGAACCAGCG+AGG 0.699815 1_1:+75417370 Msa0043940:CDS
GCATAACAAAGAGAGCACGT+TGG 0.777160 1_1:+75417136 Msa0043940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAATAATGATTATAATA+AGG + chr1_1:75417980-75417999 Msa0043940:CDS 10.0%
!! GAAAATAATGATTATAATAA+GGG + chr1_1:75417981-75418000 Msa0043940:CDS 10.0%
!! AAAATAATGATTATAATAAG+GGG + chr1_1:75417982-75418001 Msa0043940:CDS 10.0%
!! AAAATATCTAAATGTATATT+TGG - chr1_1:75418269-75418288 None:intergenic 10.0%
!! TGAAAATAATGATTATAATA+AGG + chr1_1:75417980-75417999 Msa0043940:CDS 10.0%
!! GAAAATAATGATTATAATAA+GGG + chr1_1:75417981-75418000 Msa0043940:CDS 10.0%
!! AAAATAATGATTATAATAAG+GGG + chr1_1:75417982-75418001 Msa0043940:CDS 10.0%
!! AAAATATCTAAATGTATATT+TGG - chr1_1:75418269-75418288 None:intergenic 10.0%
!!! TATATCTTAATTTTTCTTCA+TGG + chr1_1:75418139-75418158 Msa0043940:intron 15.0%
!!! CTTTCTATCAAATTTTATAA+AGG + chr1_1:75418439-75418458 Msa0043940:intron 15.0%
!! AATACTAACAAAAAAGATTA+GGG - chr1_1:75418797-75418816 None:intergenic 15.0%
!! AAATACTAACAAAAAAGATT+AGG - chr1_1:75418798-75418817 None:intergenic 15.0%
!!! ATTTGCTAAAAGTAATAATT+TGG + chr1_1:75418814-75418833 Msa0043940:three_prime_UTR 15.0%
!!! AACTTTTATATATACAAAGT+GGG - chr1_1:75418876-75418895 None:intergenic 15.0%
!!! AAACTTTTATATATACAAAG+TGG - chr1_1:75418877-75418896 None:intergenic 15.0%
!!! TATATCTTAATTTTTCTTCA+TGG + chr1_1:75418139-75418158 Msa0043940:intron 15.0%
!!! CTTTCTATCAAATTTTATAA+AGG + chr1_1:75418439-75418458 Msa0043940:intron 15.0%
!! AATACTAACAAAAAAGATTA+GGG - chr1_1:75418797-75418816 None:intergenic 15.0%
!! AAATACTAACAAAAAAGATT+AGG - chr1_1:75418798-75418817 None:intergenic 15.0%
!!! ATTTGCTAAAAGTAATAATT+TGG + chr1_1:75418814-75418833 Msa0043940:three_prime_UTR 15.0%
!!! AACTTTTATATATACAAAGT+GGG - chr1_1:75418876-75418895 None:intergenic 15.0%
!!! AAACTTTTATATATACAAAG+TGG - chr1_1:75418877-75418896 None:intergenic 15.0%
!!! AAGGGAATACAATTATTTTA+GGG - chr1_1:75416938-75416957 None:intergenic 20.0%
!!! TGAACTTTGAAATATGAATT+TGG - chr1_1:75416999-75417018 None:intergenic 20.0%
!! TAGTGATAATAATTATGAGA+TGG + chr1_1:75417641-75417660 Msa0043940:CDS 20.0%
!! TTTACTGTTAGATTAATCAT+TGG + chr1_1:75418406-75418425 Msa0043940:intron 20.0%
!! ATTTGATAGAAAGAAAAAAG+TGG - chr1_1:75418432-75418451 None:intergenic 20.0%
!! ATACTAACAAAAAAGATTAG+GGG - chr1_1:75418796-75418815 None:intergenic 20.0%
!!! ATATAAAAGTTTTGTGCAAT+TGG + chr1_1:75418885-75418904 Msa0043940:three_prime_UTR 20.0%
!!! AAGGGAATACAATTATTTTA+GGG - chr1_1:75416938-75416957 None:intergenic 20.0%
!!! TGAACTTTGAAATATGAATT+TGG - chr1_1:75416999-75417018 None:intergenic 20.0%
!! TAGTGATAATAATTATGAGA+TGG + chr1_1:75417641-75417660 Msa0043940:CDS 20.0%
!! TTTACTGTTAGATTAATCAT+TGG + chr1_1:75418406-75418425 Msa0043940:intron 20.0%
!! ATTTGATAGAAAGAAAAAAG+TGG - chr1_1:75418432-75418451 None:intergenic 20.0%
!! ATACTAACAAAAAAGATTAG+GGG - chr1_1:75418796-75418815 None:intergenic 20.0%
!!! ATATAAAAGTTTTGTGCAAT+TGG + chr1_1:75418885-75418904 Msa0043940:three_prime_UTR 20.0%
!!! AATACAATTATTTTAGGGAG+AGG - chr1_1:75416933-75416952 None:intergenic 25.0%
!! GAAGGGAATACAATTATTTT+AGG - chr1_1:75416939-75416958 None:intergenic 25.0%
! ATATTATTATTATTCCTCGC+TGG - chr1_1:75417387-75417406 None:intergenic 25.0%
! GATTAGAAAATGAGTGTATA+GGG + chr1_1:75417742-75417761 Msa0043940:CDS 25.0%
! ATAAATTATACCATGCAATC+AGG - chr1_1:75418122-75418141 None:intergenic 25.0%
! GATACCAATCATTAACTAAA+GGG - chr1_1:75418190-75418209 None:intergenic 25.0%
! TGATACCAATCATTAACTAA+AGG - chr1_1:75418191-75418210 None:intergenic 25.0%
!! ATTATTTATCAGGGAACTTT+TGG + chr1_1:75418502-75418521 Msa0043940:intron 25.0%
!!! TATTTTAGCAAAGGAAATGT+TGG - chr1_1:75418742-75418761 None:intergenic 25.0%
!!! GCTCTTATTTATTTTAGCAA+AGG - chr1_1:75418751-75418770 None:intergenic 25.0%
!!! AATACAATTATTTTAGGGAG+AGG - chr1_1:75416933-75416952 None:intergenic 25.0%
!! GAAGGGAATACAATTATTTT+AGG - chr1_1:75416939-75416958 None:intergenic 25.0%
! ATATTATTATTATTCCTCGC+TGG - chr1_1:75417387-75417406 None:intergenic 25.0%
! GATTAGAAAATGAGTGTATA+GGG + chr1_1:75417742-75417761 Msa0043940:CDS 25.0%
! ATAAATTATACCATGCAATC+AGG - chr1_1:75418122-75418141 None:intergenic 25.0%
! GATACCAATCATTAACTAAA+GGG - chr1_1:75418190-75418209 None:intergenic 25.0%
! TGATACCAATCATTAACTAA+AGG - chr1_1:75418191-75418210 None:intergenic 25.0%
!! ATTATTTATCAGGGAACTTT+TGG + chr1_1:75418502-75418521 Msa0043940:intron 25.0%
!!! TATTTTAGCAAAGGAAATGT+TGG - chr1_1:75418742-75418761 None:intergenic 25.0%
!!! GCTCTTATTTATTTTAGCAA+AGG - chr1_1:75418751-75418770 None:intergenic 25.0%
!!! TTATTTTAGGGAGAGGAAAA+GGG - chr1_1:75416926-75416945 None:intergenic 30.0%
!!! ATTATTTTAGGGAGAGGAAA+AGG - chr1_1:75416927-75416946 None:intergenic 30.0%
TTGTTAACACCTGACAAATT+AGG - chr1_1:75416963-75416982 None:intergenic 30.0%
!!! TTGAAGCTATACGTGTTTTT+TGG - chr1_1:75417024-75417043 None:intergenic 30.0%
GAAGAATTCATCACCATTAA+TGG - chr1_1:75417277-75417296 None:intergenic 30.0%
CTCTCATTGTATTTAACATC+AGG - chr1_1:75417600-75417619 None:intergenic 30.0%
GGATTAGAAAATGAGTGTAT+AGG + chr1_1:75417741-75417760 Msa0043940:CDS 30.0%
ATTGATTGATACAAAGCATG+AGG + chr1_1:75417779-75417798 Msa0043940:CDS 30.0%
CAATCCCTTTAGTTAATGAT+TGG + chr1_1:75418183-75418202 Msa0043940:intron 30.0%
GGTTGTTCTCAAAGAAAATA+AGG + chr1_1:75418638-75418657 Msa0043940:CDS 30.0%
TGGTTTGAGTGAAACTTTAT+TGG + chr1_1:75418905-75418924 Msa0043940:three_prime_UTR 30.0%
!!! TTATTTTAGGGAGAGGAAAA+GGG - chr1_1:75416926-75416945 None:intergenic 30.0%
!!! ATTATTTTAGGGAGAGGAAA+AGG - chr1_1:75416927-75416946 None:intergenic 30.0%
TTGTTAACACCTGACAAATT+AGG - chr1_1:75416963-75416982 None:intergenic 30.0%
!!! TTGAAGCTATACGTGTTTTT+TGG - chr1_1:75417024-75417043 None:intergenic 30.0%
GAAGAATTCATCACCATTAA+TGG - chr1_1:75417277-75417296 None:intergenic 30.0%
CTCTCATTGTATTTAACATC+AGG - chr1_1:75417600-75417619 None:intergenic 30.0%
GGATTAGAAAATGAGTGTAT+AGG + chr1_1:75417741-75417760 Msa0043940:CDS 30.0%
ATTGATTGATACAAAGCATG+AGG + chr1_1:75417779-75417798 Msa0043940:CDS 30.0%
CAATCCCTTTAGTTAATGAT+TGG + chr1_1:75418183-75418202 Msa0043940:intron 30.0%
GGTTGTTCTCAAAGAAAATA+AGG + chr1_1:75418638-75418657 Msa0043940:CDS 30.0%
TGGTTTGAGTGAAACTTTAT+TGG + chr1_1:75418905-75418924 Msa0043940:three_prime_UTR 30.0%
GGTGATGAATTCTTCAATTG+TGG + chr1_1:75417282-75417301 Msa0043940:CDS 35.0%
! TTCAATTGTGGTCCTTTTTC+TGG + chr1_1:75417294-75417313 Msa0043940:CDS 35.0%
ACTTCATCGAAACCTAAATC+CGG - chr1_1:75417426-75417445 None:intergenic 35.0%
GTACATAATTCAGCAACAGA+AGG - chr1_1:75417510-75417529 None:intergenic 35.0%
TCGGCTAATTCAATATCAGA+TGG - chr1_1:75417687-75417706 None:intergenic 35.0%
AGAAAATGAGTGTATAGGGA+TGG + chr1_1:75417746-75417765 Msa0043940:CDS 35.0%
AGAGAGCTATGAAATTGTTG+AGG + chr1_1:75417848-75417867 Msa0043940:CDS 35.0%
GAGAGCTATGAAATTGTTGA+GGG + chr1_1:75417849-75417868 Msa0043940:CDS 35.0%
TGTTGAGGGAGATAATATGA+TGG + chr1_1:75417863-75417882 Msa0043940:CDS 35.0%
! GGAGATAATATGATGGAGAT+TGG + chr1_1:75417870-75417889 Msa0043940:CDS 35.0%
TTCTCATGAAACACTTGAAG+AGG + chr1_1:75417932-75417951 Msa0043940:CDS 35.0%
ATGATGCAGTAATCATTGCA+TGG + chr1_1:75418033-75418052 Msa0043940:CDS 35.0%
TGATGCAGTAATCATTGCAT+GGG + chr1_1:75418034-75418053 Msa0043940:CDS 35.0%
TAATGGTGACAAGCCAAATT+TGG + chr1_1:75418079-75418098 Msa0043940:CDS 35.0%
TTCTCATCAGCATCCAAATT+TGG - chr1_1:75418095-75418114 None:intergenic 35.0%
CATGAGTGTGTCAAAAATCA+CGG - chr1_1:75418240-75418259 None:intergenic 35.0%
ACAGTAAAAAAGTGAACAGC+AGG - chr1_1:75418394-75418413 None:intergenic 35.0%
!! TTATCAGGGAACTTTTGGAA+CGG + chr1_1:75418507-75418526 Msa0043940:intron 35.0%
CATTATGCTTATGGTGAGTT+TGG + chr1_1:75418535-75418554 Msa0043940:CDS 35.0%
ATATGGATGTCATCCAGTAA+CGG + chr1_1:75418561-75418580 Msa0043940:CDS 35.0%
CTCAAAGAAAATAAGGTACG+AGG + chr1_1:75418645-75418664 Msa0043940:CDS 35.0%
AGAAAATAAGGTACGAGGTT+AGG + chr1_1:75418650-75418669 Msa0043940:CDS 35.0%
AGAAGAGACCAAGAATGAAA+GGG + chr1_1:75418686-75418705 Msa0043940:CDS 35.0%
ACAAATCTCCCTTTCATTCT+TGG - chr1_1:75418697-75418716 None:intergenic 35.0%
GGTGATGAATTCTTCAATTG+TGG + chr1_1:75417282-75417301 Msa0043940:CDS 35.0%
! TTCAATTGTGGTCCTTTTTC+TGG + chr1_1:75417294-75417313 Msa0043940:CDS 35.0%
ACTTCATCGAAACCTAAATC+CGG - chr1_1:75417426-75417445 None:intergenic 35.0%
GTACATAATTCAGCAACAGA+AGG - chr1_1:75417510-75417529 None:intergenic 35.0%
TCGGCTAATTCAATATCAGA+TGG - chr1_1:75417687-75417706 None:intergenic 35.0%
AGAAAATGAGTGTATAGGGA+TGG + chr1_1:75417746-75417765 Msa0043940:CDS 35.0%
AGAGAGCTATGAAATTGTTG+AGG + chr1_1:75417848-75417867 Msa0043940:CDS 35.0%
GAGAGCTATGAAATTGTTGA+GGG + chr1_1:75417849-75417868 Msa0043940:CDS 35.0%
TGTTGAGGGAGATAATATGA+TGG + chr1_1:75417863-75417882 Msa0043940:CDS 35.0%
! GGAGATAATATGATGGAGAT+TGG + chr1_1:75417870-75417889 Msa0043940:CDS 35.0%
TTCTCATGAAACACTTGAAG+AGG + chr1_1:75417932-75417951 Msa0043940:CDS 35.0%
ATGATGCAGTAATCATTGCA+TGG + chr1_1:75418033-75418052 Msa0043940:CDS 35.0%
TGATGCAGTAATCATTGCAT+GGG + chr1_1:75418034-75418053 Msa0043940:CDS 35.0%
TAATGGTGACAAGCCAAATT+TGG + chr1_1:75418079-75418098 Msa0043940:CDS 35.0%
TTCTCATCAGCATCCAAATT+TGG - chr1_1:75418095-75418114 None:intergenic 35.0%
CATGAGTGTGTCAAAAATCA+CGG - chr1_1:75418240-75418259 None:intergenic 35.0%
ACAGTAAAAAAGTGAACAGC+AGG - chr1_1:75418394-75418413 None:intergenic 35.0%
!! TTATCAGGGAACTTTTGGAA+CGG + chr1_1:75418507-75418526 Msa0043940:intron 35.0%
CATTATGCTTATGGTGAGTT+TGG + chr1_1:75418535-75418554 Msa0043940:CDS 35.0%
ATATGGATGTCATCCAGTAA+CGG + chr1_1:75418561-75418580 Msa0043940:CDS 35.0%
CTCAAAGAAAATAAGGTACG+AGG + chr1_1:75418645-75418664 Msa0043940:CDS 35.0%
AGAAAATAAGGTACGAGGTT+AGG + chr1_1:75418650-75418669 Msa0043940:CDS 35.0%
AGAAGAGACCAAGAATGAAA+GGG + chr1_1:75418686-75418705 Msa0043940:CDS 35.0%
ACAAATCTCCCTTTCATTCT+TGG - chr1_1:75418697-75418716 None:intergenic 35.0%
! TTCCCTTCACCTAATTTGTC+AGG + chr1_1:75416951-75416970 Msa0043940:five_prime_UTR 40.0%
CACCTGACAAATTAGGTGAA+GGG - chr1_1:75416956-75416975 None:intergenic 40.0%
ACACCTGACAAATTAGGTGA+AGG - chr1_1:75416957-75416976 None:intergenic 40.0%
AAAAACGTAGCAAACGCTGT+TGG + chr1_1:75417084-75417103 Msa0043940:CDS 40.0%
TTCTTGGTGAAGCCAGAAAA+AGG - chr1_1:75417309-75417328 None:intergenic 40.0%
!!! TTTTTCTGGCTTCACCAAGA+AGG + chr1_1:75417308-75417327 Msa0043940:CDS 40.0%
AAATCCGGCACAAGATGAAA+CGG - chr1_1:75417411-75417430 None:intergenic 40.0%
TTTCATCTTGTGCCGGATTT+AGG + chr1_1:75417411-75417430 Msa0043940:CDS 40.0%
ATGAAGCGCAACTTCTTTAC+AGG + chr1_1:75417469-75417488 Msa0043940:CDS 40.0%
TGAAGCGCAACTTCTTTACA+GGG + chr1_1:75417470-75417489 Msa0043940:CDS 40.0%
GCAACAGAAGGATCGAAAAT+TGG - chr1_1:75417498-75417517 None:intergenic 40.0%
CTCAACATCAGCTGCAAATT+CGG - chr1_1:75417706-75417725 None:intergenic 40.0%
AGCTGATGTTGAGAGCTTAT+TGG + chr1_1:75417713-75417732 Msa0043940:CDS 40.0%
GCTGATGTTGAGAGCTTATT+GGG + chr1_1:75417714-75417733 Msa0043940:CDS 40.0%
ATGTTGAGAGCTTATTGGGT+AGG + chr1_1:75417718-75417737 Msa0043940:CDS 40.0%
TGTTGAGAGCTTATTGGGTA+GGG + chr1_1:75417719-75417738 Msa0043940:CDS 40.0%
TGTATAGGGATGGAAGAGTT+GGG + chr1_1:75417756-75417775 Msa0043940:CDS 40.0%
TGAAACACTTGAAGAGGTGA+AGG + chr1_1:75417938-75417957 Msa0043940:CDS 40.0%
ATTTGGATGCTGATGAGAAC+TGG + chr1_1:75418096-75418115 Msa0043940:CDS 40.0%
! CGTGATTTTTGACACACTCA+TGG + chr1_1:75418238-75418257 Msa0043940:intron 40.0%
CTTTACAACACTTGCACACA+CGG + chr1_1:75418345-75418364 Msa0043940:intron 40.0%
ACGGAGGTTCATTATGCTTA+TGG + chr1_1:75418526-75418545 Msa0043940:CDS 40.0%
TATGCTTATGGTGAGTTTGG+TGG + chr1_1:75418538-75418557 Msa0043940:CDS 40.0%
! TATGGTGAGTTTGGTGGATA+TGG + chr1_1:75418544-75418563 Msa0043940:CDS 40.0%
ACAGAGAAAAGCGAAGAACA+AGG + chr1_1:75418617-75418636 Msa0043940:CDS 40.0%
GAGAAGAGACCAAGAATGAA+AGG + chr1_1:75418685-75418704 Msa0043940:CDS 40.0%
TGAAAGGGAGATTTGTGAAG+AGG + chr1_1:75418701-75418720 Msa0043940:CDS 40.0%
GAAAGGGAGATTTGTGAAGA+GGG + chr1_1:75418702-75418721 Msa0043940:CDS 40.0%
AGGAAATGTTGGAACTGCAA+AGG - chr1_1:75418731-75418750 None:intergenic 40.0%
! TTCCCTTCACCTAATTTGTC+AGG + chr1_1:75416951-75416970 Msa0043940:five_prime_UTR 40.0%
CACCTGACAAATTAGGTGAA+GGG - chr1_1:75416956-75416975 None:intergenic 40.0%
ACACCTGACAAATTAGGTGA+AGG - chr1_1:75416957-75416976 None:intergenic 40.0%
AAAAACGTAGCAAACGCTGT+TGG + chr1_1:75417084-75417103 Msa0043940:CDS 40.0%
TTCTTGGTGAAGCCAGAAAA+AGG - chr1_1:75417309-75417328 None:intergenic 40.0%
!!! TTTTTCTGGCTTCACCAAGA+AGG + chr1_1:75417308-75417327 Msa0043940:CDS 40.0%
AAATCCGGCACAAGATGAAA+CGG - chr1_1:75417411-75417430 None:intergenic 40.0%
TTTCATCTTGTGCCGGATTT+AGG + chr1_1:75417411-75417430 Msa0043940:CDS 40.0%
ATGAAGCGCAACTTCTTTAC+AGG + chr1_1:75417469-75417488 Msa0043940:CDS 40.0%
TGAAGCGCAACTTCTTTACA+GGG + chr1_1:75417470-75417489 Msa0043940:CDS 40.0%
GCAACAGAAGGATCGAAAAT+TGG - chr1_1:75417498-75417517 None:intergenic 40.0%
CTCAACATCAGCTGCAAATT+CGG - chr1_1:75417706-75417725 None:intergenic 40.0%
AGCTGATGTTGAGAGCTTAT+TGG + chr1_1:75417713-75417732 Msa0043940:CDS 40.0%
GCTGATGTTGAGAGCTTATT+GGG + chr1_1:75417714-75417733 Msa0043940:CDS 40.0%
ATGTTGAGAGCTTATTGGGT+AGG + chr1_1:75417718-75417737 Msa0043940:CDS 40.0%
TGTTGAGAGCTTATTGGGTA+GGG + chr1_1:75417719-75417738 Msa0043940:CDS 40.0%
TGTATAGGGATGGAAGAGTT+GGG + chr1_1:75417756-75417775 Msa0043940:CDS 40.0%
TGAAACACTTGAAGAGGTGA+AGG + chr1_1:75417938-75417957 Msa0043940:CDS 40.0%
ATTTGGATGCTGATGAGAAC+TGG + chr1_1:75418096-75418115 Msa0043940:CDS 40.0%
! CGTGATTTTTGACACACTCA+TGG + chr1_1:75418238-75418257 Msa0043940:intron 40.0%
CTTTACAACACTTGCACACA+CGG + chr1_1:75418345-75418364 Msa0043940:intron 40.0%
ACGGAGGTTCATTATGCTTA+TGG + chr1_1:75418526-75418545 Msa0043940:CDS 40.0%
TATGCTTATGGTGAGTTTGG+TGG + chr1_1:75418538-75418557 Msa0043940:CDS 40.0%
! TATGGTGAGTTTGGTGGATA+TGG + chr1_1:75418544-75418563 Msa0043940:CDS 40.0%
ACAGAGAAAAGCGAAGAACA+AGG + chr1_1:75418617-75418636 Msa0043940:CDS 40.0%
GAGAAGAGACCAAGAATGAA+AGG + chr1_1:75418685-75418704 Msa0043940:CDS 40.0%
TGAAAGGGAGATTTGTGAAG+AGG + chr1_1:75418701-75418720 Msa0043940:CDS 40.0%
GAAAGGGAGATTTGTGAAGA+GGG + chr1_1:75418702-75418721 Msa0043940:CDS 40.0%
AGGAAATGTTGGAACTGCAA+AGG - chr1_1:75418731-75418750 None:intergenic 40.0%
TAGGGAGAGGAAAAGGGAAA+AGG - chr1_1:75416920-75416939 None:intergenic 45.0%
TGTTGGAGGCAAAACTGCTA+GGG + chr1_1:75417101-75417120 Msa0043940:CDS 45.0%
! GCATAACAAAGAGAGCACGT+TGG + chr1_1:75417136-75417155 Msa0043940:CDS 45.0%
GCGTCGTACAAGTCCATTAA+TGG + chr1_1:75417261-75417280 Msa0043940:CDS 45.0%
!! TCTTGGTGTTCTTGCCTTCT+TGG - chr1_1:75417325-75417344 None:intergenic 45.0%
AAGGCAAGAACACCAAGACA+GGG + chr1_1:75417327-75417346 Msa0043940:CDS 45.0%
GATTTGTGTTTCCCCTGTCT+TGG - chr1_1:75417342-75417361 None:intergenic 45.0%
TATCCCGTTTCATCTTGTGC+CGG + chr1_1:75417404-75417423 Msa0043940:CDS 45.0%
AATCCGGCACAAGATGAAAC+GGG - chr1_1:75417410-75417429 None:intergenic 45.0%
TGTACTAGTCCTCCTTCAGT+TGG + chr1_1:75417525-75417544 Msa0043940:CDS 45.0%
TCAGTTGAACCAACTGAAGG+AGG - chr1_1:75417537-75417556 None:intergenic 45.0%
CCTTCAGTTGAACCAACTGA+AGG - chr1_1:75417540-75417559 None:intergenic 45.0%
! CCTTCAGTTGGTTCAACTGA+AGG + chr1_1:75417537-75417556 Msa0043940:CDS 45.0%
! TCAGTTGGTTCAACTGAAGG+AGG + chr1_1:75417540-75417559 Msa0043940:CDS 45.0%
GTTGAGAGCTTATTGGGTAG+GGG + chr1_1:75417720-75417739 Msa0043940:CDS 45.0%
GTGTATAGGGATGGAAGAGT+TGG + chr1_1:75417755-75417774 Msa0043940:CDS 45.0%
! AGTGAGAAGTGGAAGTGTAG+TGG + chr1_1:75417804-75417823 Msa0043940:CDS 45.0%
! GAAGTGGAAGTGTAGTGGAA+AGG + chr1_1:75417809-75417828 Msa0043940:CDS 45.0%
! GAAGTGTAGTGGAAAGGTGA+AGG + chr1_1:75417815-75417834 Msa0043940:CDS 45.0%
AGTGGAAAGGTGAAGGAAGA+AGG + chr1_1:75417822-75417841 Msa0043940:CDS 45.0%
! CATTAGTCCAGGGACACTTT+TGG - chr1_1:75418064-75418083 None:intergenic 45.0%
!! CAAAAGTGTCCCTGGACTAA+TGG + chr1_1:75418062-75418081 Msa0043940:CDS 45.0%
GCAGGTCTAACACAAGTGAA+TGG - chr1_1:75418376-75418395 None:intergenic 45.0%
TGTCATCCAGTAACGGTAGA+TGG + chr1_1:75418568-75418587 Msa0043940:CDS 45.0%
TAGGGAGAGGAAAAGGGAAA+AGG - chr1_1:75416920-75416939 None:intergenic 45.0%
TGTTGGAGGCAAAACTGCTA+GGG + chr1_1:75417101-75417120 Msa0043940:CDS 45.0%
! GCATAACAAAGAGAGCACGT+TGG + chr1_1:75417136-75417155 Msa0043940:CDS 45.0%
GCGTCGTACAAGTCCATTAA+TGG + chr1_1:75417261-75417280 Msa0043940:CDS 45.0%
!! TCTTGGTGTTCTTGCCTTCT+TGG - chr1_1:75417325-75417344 None:intergenic 45.0%
AAGGCAAGAACACCAAGACA+GGG + chr1_1:75417327-75417346 Msa0043940:CDS 45.0%
GATTTGTGTTTCCCCTGTCT+TGG - chr1_1:75417342-75417361 None:intergenic 45.0%
TATCCCGTTTCATCTTGTGC+CGG + chr1_1:75417404-75417423 Msa0043940:CDS 45.0%
AATCCGGCACAAGATGAAAC+GGG - chr1_1:75417410-75417429 None:intergenic 45.0%
TGTACTAGTCCTCCTTCAGT+TGG + chr1_1:75417525-75417544 Msa0043940:CDS 45.0%
TCAGTTGAACCAACTGAAGG+AGG - chr1_1:75417537-75417556 None:intergenic 45.0%
CCTTCAGTTGAACCAACTGA+AGG - chr1_1:75417540-75417559 None:intergenic 45.0%
! CCTTCAGTTGGTTCAACTGA+AGG + chr1_1:75417537-75417556 Msa0043940:CDS 45.0%
! TCAGTTGGTTCAACTGAAGG+AGG + chr1_1:75417540-75417559 Msa0043940:CDS 45.0%
GTTGAGAGCTTATTGGGTAG+GGG + chr1_1:75417720-75417739 Msa0043940:CDS 45.0%
GTGTATAGGGATGGAAGAGT+TGG + chr1_1:75417755-75417774 Msa0043940:CDS 45.0%
! AGTGAGAAGTGGAAGTGTAG+TGG + chr1_1:75417804-75417823 Msa0043940:CDS 45.0%
! GAAGTGGAAGTGTAGTGGAA+AGG + chr1_1:75417809-75417828 Msa0043940:CDS 45.0%
! GAAGTGTAGTGGAAAGGTGA+AGG + chr1_1:75417815-75417834 Msa0043940:CDS 45.0%
AGTGGAAAGGTGAAGGAAGA+AGG + chr1_1:75417822-75417841 Msa0043940:CDS 45.0%
! CATTAGTCCAGGGACACTTT+TGG - chr1_1:75418064-75418083 None:intergenic 45.0%
!! CAAAAGTGTCCCTGGACTAA+TGG + chr1_1:75418062-75418081 Msa0043940:CDS 45.0%
GCAGGTCTAACACAAGTGAA+TGG - chr1_1:75418376-75418395 None:intergenic 45.0%
TGTCATCCAGTAACGGTAGA+TGG + chr1_1:75418568-75418587 Msa0043940:CDS 45.0%
!!! TTTTAATTTAATTATTTATC+AGG + chr1_1:75418492-75418511 Msa0043940:intron 5.0%
!!! TTTAATTTAATTATTTATCA+GGG + chr1_1:75418493-75418512 Msa0043940:intron 5.0%
!!! TTTTAATTTAATTATTTATC+AGG + chr1_1:75418492-75418511 Msa0043940:intron 5.0%
!!! TTTAATTTAATTATTTATCA+GGG + chr1_1:75418493-75418512 Msa0043940:intron 5.0%
AACGTAGCAAACGCTGTTGG+AGG + chr1_1:75417087-75417106 Msa0043940:CDS 50.0%
CTGTTGGAGGCAAAACTGCT+AGG + chr1_1:75417100-75417119 Msa0043940:CDS 50.0%
GAAGGCAAGAACACCAAGAC+AGG + chr1_1:75417326-75417345 Msa0043940:CDS 50.0%
AGGCAAGAACACCAAGACAG+GGG + chr1_1:75417328-75417347 Msa0043940:CDS 50.0%
GGTTCAACTGAAGGAGGACT+AGG + chr1_1:75417546-75417565 Msa0043940:CDS 50.0%
AACTGAAGGAGGACTAGGAG+CGG + chr1_1:75417551-75417570 Msa0043940:CDS 50.0%
AGCATGAGGAGAGTGAGAAG+TGG + chr1_1:75417793-75417812 Msa0043940:CDS 50.0%
GAAGAGGTGAAGGAGAAGTG+TGG + chr1_1:75417948-75417967 Msa0043940:CDS 50.0%
GGCTTGTCACCATTAGTCCA+GGG - chr1_1:75418074-75418093 None:intergenic 50.0%
! TGGCTTGTCACCATTAGTCC+AGG - chr1_1:75418075-75418094 None:intergenic 50.0%
! TGAGAACTGGCCTGATTGCA+TGG + chr1_1:75418109-75418128 Msa0043940:CDS 50.0%
!!! TCAGGGAACTTTTGGAACGG+AGG + chr1_1:75418510-75418529 Msa0043940:intron 50.0%
CATCCAGTAACGGTAGATGG+AGG + chr1_1:75418571-75418590 Msa0043940:CDS 50.0%
AACGTAGCAAACGCTGTTGG+AGG + chr1_1:75417087-75417106 Msa0043940:CDS 50.0%
CTGTTGGAGGCAAAACTGCT+AGG + chr1_1:75417100-75417119 Msa0043940:CDS 50.0%
GAAGGCAAGAACACCAAGAC+AGG + chr1_1:75417326-75417345 Msa0043940:CDS 50.0%
AGGCAAGAACACCAAGACAG+GGG + chr1_1:75417328-75417347 Msa0043940:CDS 50.0%
GGTTCAACTGAAGGAGGACT+AGG + chr1_1:75417546-75417565 Msa0043940:CDS 50.0%
AACTGAAGGAGGACTAGGAG+CGG + chr1_1:75417551-75417570 Msa0043940:CDS 50.0%
AGCATGAGGAGAGTGAGAAG+TGG + chr1_1:75417793-75417812 Msa0043940:CDS 50.0%
GAAGAGGTGAAGGAGAAGTG+TGG + chr1_1:75417948-75417967 Msa0043940:CDS 50.0%
GGCTTGTCACCATTAGTCCA+GGG - chr1_1:75418074-75418093 None:intergenic 50.0%
! TGGCTTGTCACCATTAGTCC+AGG - chr1_1:75418075-75418094 None:intergenic 50.0%
! TGAGAACTGGCCTGATTGCA+TGG + chr1_1:75418109-75418128 Msa0043940:CDS 50.0%
!!! TCAGGGAACTTTTGGAACGG+AGG + chr1_1:75418510-75418529 Msa0043940:intron 50.0%
CATCCAGTAACGGTAGATGG+AGG + chr1_1:75418571-75418590 Msa0043940:CDS 50.0%
!! GGGATAGCCAAAAGTGTCCC+TGG + chr1_1:75418054-75418073 Msa0043940:CDS 55.0%
CTGCCTCCATCTACCGTTAC+TGG - chr1_1:75418577-75418596 None:intergenic 55.0%
AACGGTAGATGGAGGCAGAG+AGG + chr1_1:75418579-75418598 Msa0043940:CDS 55.0%
TAGATGGAGGCAGAGAGGCA+AGG + chr1_1:75418584-75418603 Msa0043940:CDS 55.0%
AGATGGAGGCAGAGAGGCAA+GGG + chr1_1:75418585-75418604 Msa0043940:CDS 55.0%
GCAGAGAGGCAAGGGTTTCA+AGG + chr1_1:75418593-75418612 Msa0043940:CDS 55.0%
!! GGGATAGCCAAAAGTGTCCC+TGG + chr1_1:75418054-75418073 Msa0043940:CDS 55.0%
CTGCCTCCATCTACCGTTAC+TGG - chr1_1:75418577-75418596 None:intergenic 55.0%
AACGGTAGATGGAGGCAGAG+AGG + chr1_1:75418579-75418598 Msa0043940:CDS 55.0%
TAGATGGAGGCAGAGAGGCA+AGG + chr1_1:75418584-75418603 Msa0043940:CDS 55.0%
AGATGGAGGCAGAGAGGCAA+GGG + chr1_1:75418585-75418604 Msa0043940:CDS 55.0%
GCAGAGAGGCAAGGGTTTCA+AGG + chr1_1:75418593-75418612 Msa0043940:CDS 55.0%
!! ATTCCTCGCTGGTTCGCTGC+TGG - chr1_1:75417376-75417395 None:intergenic 60.0%
!! ATTCCTCGCTGGTTCGCTGC+TGG - chr1_1:75417376-75417395 None:intergenic 60.0%
!! CCTCGCTGGTTCGCTGCTGG+AGG - chr1_1:75417373-75417392 None:intergenic 70.0%
CCTCCAGCAGCGAACCAGCG+AGG + chr1_1:75417370-75417389 Msa0043940:CDS 70.0%
!! CCTCGCTGGTTCGCTGCTGG+AGG - chr1_1:75417373-75417392 None:intergenic 70.0%
CCTCCAGCAGCGAACCAGCG+AGG + chr1_1:75417370-75417389 Msa0043940:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 75416915 75418942 75416915 ID=Msa0043940;Name=Msa0043940
chr1_1 mRNA 75416915 75418942 75416915 ID=Msa0043940-mRNA-1;Parent=Msa0043940;Name=Msa0043940-mRNA-1;_AED=0.01;_eAED=0.01;_QI=154|1|1|1|1|1|2|180|436
chr1_1 exon 75416915 75418130 75416915 ID=Msa0043940-mRNA-1:exon:25423;Parent=Msa0043940-mRNA-1
chr1_1 exon 75418514 75418942 75418514 ID=Msa0043940-mRNA-1:exon:25424;Parent=Msa0043940-mRNA-1
chr1_1 five_prime_UTR 75416915 75417068 75416915 ID=Msa0043940-mRNA-1:five_prime_utr;Parent=Msa0043940-mRNA-1
chr1_1 CDS 75417069 75418130 75417069 ID=Msa0043940-mRNA-1:cds;Parent=Msa0043940-mRNA-1
chr1_1 CDS 75418514 75418762 75418514 ID=Msa0043940-mRNA-1:cds;Parent=Msa0043940-mRNA-1
chr1_1 three_prime_UTR 75418763 75418942 75418763 ID=Msa0043940-mRNA-1:three_prime_utr;Parent=Msa0043940-mRNA-1
Gene Sequence

>Msa0043940

ATGACTTGTTCTAGTAAAAACGTAGCAAACGCTGTTGGAGGCAAAACTGCTAGGGCTTGTGACAGTTGCATAACAAAGAGAGCACGTTGGTATTGTGCTGCTGATGATGCTTTTCTCTGTCAAGCTTGTGACTCTTCTGTTCATTCAGCTAATTCTTTAGCTCGAAGACATGAAAGAGTTCGTTTGAAAACAGCGTCGTACAAGTCCATTAATGGTGATGAATTCTTCAATTGTGGTCCTTTTTCTGGCTTCACCAAGAAGGCAAGAACACCAAGACAGGGGAAACACAAATCAAAATCATCCTCCAGCAGCGAACCAGCGAGGAATAATAATAATATCCCGTTTCATCTTGTGCCGGATTTAGGTTTCGATGAAGTTAATTCAAATTCACATGACGAAAATGAAGCGCAACTTCTTTACAGGGTACCAATTTTCGATCCTTCTGTTGCTGAATTATGTACTAGTCCTCCTTCAGTTGGTTCAACTGAAGGAGGACTAGGAGCGGTAGTTGTTGCTTCTGCTTTCGCTCCTGATGTTAAATACAATGAGAGTGAAAGCAGAGTTCAACTAGCTAGTGATAATAATTATGAGATGGAAAGCTTTCACGAGCTTCTTCCATCTGATATTGAATTAGCCGAATTTGCAGCTGATGTTGAGAGCTTATTGGGTAGGGGATTAGAAAATGAGTGTATAGGGATGGAAGAGTTGGGATTGATTGATACAAAGCATGAGGAGAGTGAGAAGTGGAAGTGTAGTGGAAAGGTGAAGGAAGAAGGTGAAGAGAGCTATGAAATTGTTGAGGGAGATAATATGATGGAGATTGGAAAAGAATCTTCATTTGAGTTGAATTTTGATTATGATGATTCTCATGAAACACTTGAAGAGGTGAAGGAGAAGTGTGGAGAACAAAATGAAAATAATGATTATAATAAGGGGAAAAGAAAAATATCTTTGCAGCTAGATTATGATGCAGTAATCATTGCATGGGATAGCCAAAAGTGTCCCTGGACTAATGGTGACAAGCCAAATTTGGATGCTGATGAGAACTGGCCTGATTGCATGGGAACTTTTGGAACGGAGGTTCATTATGCTTATGGTGAGTTTGGTGGATATGGATGTCATCCAGTAACGGTAGATGGAGGCAGAGAGGCAAGGGTTTCAAGGTACAGAGAAAAGCGAAGAACAAGGTTGTTCTCAAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCAAGAATGAAAGGGAGATTTGTGAAGAGGGCTTCCTTTGCAGTTCCAACATTTCCTTTGCTAAAATAA

Protein sequence

>Msa0043940

MTCSSKNVANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANSLARRHERVRLKTASYKSINGDEFFNCGPFSGFTKKARTPRQGKHKSKSSSSSEPARNNNNIPFHLVPDLGFDEVNSNSHDENEAQLLYRVPIFDPSVAELCTSPPSVGSTEGGLGAVVVASAFAPDVKYNESESRVQLASDNNYEMESFHELLPSDIELAEFAADVESLLGRGLENECIGMEELGLIDTKHEESEKWKCSGKVKEEGEESYEIVEGDNMMEIGKESSFELNFDYDDSHETLEEVKEKCGEQNENNDYNKGKRKISLQLDYDAVIIAWDSQKCPWTNGDKPNLDADENWPDCMGTFGTEVHYAYGEFGGYGCHPVTVDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAVPTFPLLK*