AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0802210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802210 MtrunA17_Chr5g0409451 96.059 203 8 0 1 203 1 203 2.15e-128 359
Msa0802210 MtrunA17_Chr6g0469701 34.351 131 86 0 64 194 46 176 1.19e-20 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802210 AT4G19100.1 64.497 169 59 1 35 202 45 213 2.01e-63 196
Msa0802210 AT4G19100.2 67.333 150 48 1 54 202 1 150 1.78e-57 178
Msa0802210 AT5G52780.1 43.333 90 51 0 105 194 76 165 3.19e-19 81.3

Find 54 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCCCTTTGGACCCTTTA+AGG 0.095561 5_3:+16394724 None:intergenic
AACAAAAGACCAACACTTAA+TGG 0.213710 5_3:+16394524 None:intergenic
AAAAGGGACCCTTCTCTTAA+TGG 0.223828 5_3:+16394365 None:intergenic
TGAAAATTGATGTGCCAAAT+TGG 0.226664 5_3:-16394469 Msa0802210:CDS
ACCTATACAAGCAACCTTAA+AGG 0.252062 5_3:-16394738 Msa0802210:CDS
ACAAGAAATGGAACCCAATT+TGG 0.284797 5_3:+16394455 None:intergenic
ATTATTAACTGCAGCATGTT+AGG 0.321667 5_3:-16394841 Msa0802210:intron
TTAAAGGGTCCAAAGGGATT+TGG 0.345555 5_3:-16394722 Msa0802210:CDS
AGTGAGAGTGAGATAATAAT+AGG 0.347057 5_3:+16395165 None:intergenic
TGGGATTGTTTCTGCTAGTT+GGG 0.348842 5_3:-16394390 Msa0802210:CDS
ATTAAGAGAAGGGTCCCTTT+TGG 0.356801 5_3:-16394363 Msa0802210:CDS
TTTGAGGTTCTTGATTGTCT+TGG 0.368000 5_3:+16394679 None:intergenic
CCCTTTAAGGTTGCTTGTAT+AGG 0.369416 5_3:+16394737 None:intergenic
ATGGGATTGTTTCTGCTAGT+TGG 0.381471 5_3:-16394391 Msa0802210:CDS
TTAACTAATATAATCAAGTA+TGG 0.384790 5_3:+16394252 None:intergenic
ATTCTGTTTGTCACTACTTC+AGG 0.385394 5_3:+16394578 None:intergenic
TTAGTTAATCCATTTGTAGA+AGG 0.394092 5_3:-16394237 Msa0802210:three_prime_UTR
CCTATACAAGCAACCTTAAA+GGG 0.403014 5_3:-16394737 Msa0802210:CDS
ATGATGTTGGATTTAGACTT+TGG 0.404235 5_3:-16394171 Msa0802210:three_prime_UTR
AAGCTGATTCCTTCTACAAA+TGG 0.408001 5_3:+16394228 None:intergenic
AAGAAGAAAGACACAAGAAA+TGG 0.410807 5_3:+16394443 None:intergenic
GGGGAAGGTCCAAATCCCTT+TGG 0.413915 5_3:+16394713 None:intergenic
GTAGAATGGCATTGTCTGTT+GGG 0.421677 5_3:-16394550 Msa0802210:CDS
GGACTGAAGCTCAAAAGAAT+TGG 0.428750 5_3:-16394337 Msa0802210:CDS
GAAAATTGATGTGCCAAATT+GGG 0.437713 5_3:-16394468 Msa0802210:CDS
ATAGGTGGCTCCAGAGGATA+AGG 0.462030 5_3:+16395183 None:intergenic
AATAGAGAAGTGAGACTTGT+TGG 0.464365 5_3:+16394796 None:intergenic
GAGCTTCAGTCCATCCCAAA+AGG 0.467198 5_3:+16394348 None:intergenic
GAAGAAGATAGAAGAGAGCA+AGG 0.472324 5_3:-16394608 Msa0802210:CDS
CATGGTATGATATGTGTTGA+TGG 0.475069 5_3:+16395087 None:intergenic
GTAGTGACAAACAGAATGAT+AGG 0.478411 5_3:-16394572 Msa0802210:CDS
TCCTTCACAACCTTATCCTC+TGG 0.480244 5_3:-16395193 Msa0802210:five_prime_UTR
ACTTAGAGGTGGATCTCAAA+AGG 0.491936 5_3:-16394297 Msa0802210:CDS
CAATCCGCAATTTCTTCACA+AGG 0.492043 5_3:-16395035 Msa0802210:intron
TCTCACTCTCACTATTGTAC+CGG 0.495493 5_3:-16395155 Msa0802210:five_prime_UTR
GTTGGGATTCCATTAAGTGT+TGG 0.507152 5_3:-16394533 Msa0802210:CDS
AAACAGAATGATAGGTAGAA+TGG 0.509942 5_3:-16394564 Msa0802210:CDS
GGTAGAATGGCATTGTCTGT+TGG 0.525608 5_3:-16394551 Msa0802210:CDS
AGCTTCAGTCCATCCCAAAA+GGG 0.534187 5_3:+16394349 None:intergenic
TTGCGGATTGAGAATTGTAG+AGG 0.535900 5_3:+16395048 None:intergenic
GCAACCTTAAAGGGTCCAAA+GGG 0.543532 5_3:-16394728 Msa0802210:CDS
AAAGTCTAAATCCAACATCA+TGG 0.545422 5_3:+16394173 None:intergenic
GATGAAGATTACTACATAAG+TGG 0.551952 5_3:+16395109 None:intergenic
GTTGGGATCCATTAAGAGAA+GGG 0.567800 5_3:-16394373 Msa0802210:CDS
AGCAACCTTAAAGGGTCCAA+AGG 0.572031 5_3:-16394729 Msa0802210:CDS
CTCACTCTCACTATTGTACC+GGG 0.576390 5_3:-16395154 Msa0802210:five_prime_UTR
GGGAGTTGTAGTAGTCATCA+TGG 0.576576 5_3:+16395069 None:intergenic
TCCAGAGGATAAGGTTGTGA+AGG 0.578476 5_3:+16395192 None:intergenic
GGAACCTTGTGAAGAAATTG+CGG 0.589448 5_3:+16395031 None:intergenic
TGAGAGAAGTGAAGCTGTGA+TGG 0.592571 5_3:+16394767 None:intergenic
AGTTGGGATCCATTAAGAGA+AGG 0.593997 5_3:-16394374 Msa0802210:CDS
TGCGGATTGAGAATTGTAGA+GGG 0.597653 5_3:+16395049 None:intergenic
ATAATAATAGGTGGCTCCAG+AGG 0.652384 5_3:+16395177 None:intergenic
GAGAGTGAGATAATAATAGG+TGG 0.664025 5_3:+16395168 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTAATAAAATGCAA+TGG + chr5_3:16395196-16395215 None:intergenic 10.0%
!!! CATTTTATTAAAAATAATGT+TGG - chr5_3:16395199-16395218 Msa0802210:five_prime_UTR 10.0%
!!! TTATTTTTAATAAAATGCAA+TGG + chr5_3:16395196-16395215 None:intergenic 10.0%
!! TCTTAAAATTGGTAAAATAA+CGG + chr5_3:16394314-16394333 None:intergenic 15.0%
!! GAAAACATAAATCTTAAAAT+TGG + chr5_3:16394325-16394344 None:intergenic 15.0%
!!! ACTTTAAGATAGTAAAAAAA+TGG + chr5_3:16394812-16394831 None:intergenic 15.0%
!!! TTTTTTTACTATCTTAAAGT+TGG - chr5_3:16394812-16394831 Msa0802210:CDS 15.0%
!! TTAACTAATATAATCAAGTA+TGG + chr5_3:16395057-16395076 None:intergenic 15.0%
!! TCTTAAAATTGGTAAAATAA+CGG + chr5_3:16394314-16394333 None:intergenic 15.0%
!! GAAAACATAAATCTTAAAAT+TGG + chr5_3:16394325-16394344 None:intergenic 15.0%
!!! ACTTTAAGATAGTAAAAAAA+TGG + chr5_3:16394812-16394831 None:intergenic 15.0%
!!! TTTTTTTACTATCTTAAAGT+TGG - chr5_3:16394812-16394831 Msa0802210:CDS 15.0%
!! TTAACTAATATAATCAAGTA+TGG + chr5_3:16395057-16395076 None:intergenic 15.0%
!! CTTAAAATTGGTAAAATAAC+GGG + chr5_3:16394313-16394332 None:intergenic 20.0%
!!! TTTTTCTATGCTTAAAAATG+AGG + chr5_3:16394354-16394373 None:intergenic 20.0%
!! TAGAAAAATATCAACAACTT+AGG - chr5_3:16394366-16394385 Msa0802210:CDS 20.0%
!! CTTAAAATTGGTAAAATAAC+GGG + chr5_3:16394313-16394332 None:intergenic 20.0%
!!! TTTTTCTATGCTTAAAAATG+AGG + chr5_3:16394354-16394373 None:intergenic 20.0%
!! TAGAAAAATATCAACAACTT+AGG - chr5_3:16394366-16394385 Msa0802210:CDS 20.0%
!! AATAACGGGAAATAAATAGA+AGG + chr5_3:16394299-16394318 None:intergenic 25.0%
!!! TTGTCTTGGTTTTTTTCTTT+GGG + chr5_3:16394616-16394635 None:intergenic 25.0%
!!! ATTGTCTTGGTTTTTTTCTT+TGG + chr5_3:16394617-16394636 None:intergenic 25.0%
!!! TTGTGTCTTTCTTCTTTTTT+GGG - chr5_3:16394870-16394889 Msa0802210:intron 25.0%
! TTAGTTAATCCATTTGTAGA+AGG - chr5_3:16395069-16395088 Msa0802210:CDS 25.0%
!! AATAACGGGAAATAAATAGA+AGG + chr5_3:16394299-16394318 None:intergenic 25.0%
!!! TTGTCTTGGTTTTTTTCTTT+GGG + chr5_3:16394616-16394635 None:intergenic 25.0%
!!! ATTGTCTTGGTTTTTTTCTT+TGG + chr5_3:16394617-16394636 None:intergenic 25.0%
!!! TTGTGTCTTTCTTCTTTTTT+GGG - chr5_3:16394870-16394889 Msa0802210:intron 25.0%
! TTAGTTAATCCATTTGTAGA+AGG - chr5_3:16395069-16395088 Msa0802210:CDS 25.0%
AGTGAGAGTGAGATAATAAT+AGG + chr5_3:16394144-16394163 None:intergenic 30.0%
!!! TTTATTTTTGAGTAGAGACC+CGG + chr5_3:16394173-16394192 None:intergenic 30.0%
GATGAAGATTACTACATAAG+TGG + chr5_3:16394200-16394219 None:intergenic 30.0%
ATATCAACAACTTAGGAACT+AGG - chr5_3:16394373-16394392 Msa0802210:CDS 30.0%
ATTATTAACTGCAGCATGTT+AGG - chr5_3:16394465-16394484 Msa0802210:CDS 30.0%
!!! TGTCTTGGTTTTTTTCTTTG+GGG + chr5_3:16394615-16394634 None:intergenic 30.0%
!! CTTCTTGTTTGTTCTTTTTG+AGG + chr5_3:16394646-16394665 None:intergenic 30.0%
AAACAGAATGATAGGTAGAA+TGG - chr5_3:16394742-16394761 Msa0802210:CDS 30.0%
AACAAAAGACCAACACTTAA+TGG + chr5_3:16394785-16394804 None:intergenic 30.0%
TGAAAATTGATGTGCCAAAT+TGG - chr5_3:16394837-16394856 Msa0802210:intron 30.0%
GAAAATTGATGTGCCAAATT+GGG - chr5_3:16394838-16394857 Msa0802210:intron 30.0%
AAGAAGAAAGACACAAGAAA+TGG + chr5_3:16394866-16394885 None:intergenic 30.0%
!!! CTTGTGTCTTTCTTCTTTTT+TGG - chr5_3:16394869-16394888 Msa0802210:intron 30.0%
!!! AAAAGAATTGGCCTGTTTTT+TGG - chr5_3:16394981-16395000 Msa0802210:intron 30.0%
CTAAGTGATTTCCAAAAAAC+AGG + chr5_3:16394995-16395014 None:intergenic 30.0%
!!! GTTTTTTGGAAATCACTTAG+AGG - chr5_3:16394995-16395014 Msa0802210:intron 30.0%
! TCAATTTTAGACCATGATGT+TGG - chr5_3:16395122-16395141 Msa0802210:five_prime_UTR 30.0%
AAAGTCTAAATCCAACATCA+TGG + chr5_3:16395136-16395155 None:intergenic 30.0%
ATGATGTTGGATTTAGACTT+TGG - chr5_3:16395135-16395154 Msa0802210:five_prime_UTR 30.0%
AGTGAGAGTGAGATAATAAT+AGG + chr5_3:16394144-16394163 None:intergenic 30.0%
!!! TTTATTTTTGAGTAGAGACC+CGG + chr5_3:16394173-16394192 None:intergenic 30.0%
GATGAAGATTACTACATAAG+TGG + chr5_3:16394200-16394219 None:intergenic 30.0%
ATATCAACAACTTAGGAACT+AGG - chr5_3:16394373-16394392 Msa0802210:CDS 30.0%
ATTATTAACTGCAGCATGTT+AGG - chr5_3:16394465-16394484 Msa0802210:CDS 30.0%
!!! TGTCTTGGTTTTTTTCTTTG+GGG + chr5_3:16394615-16394634 None:intergenic 30.0%
!! CTTCTTGTTTGTTCTTTTTG+AGG + chr5_3:16394646-16394665 None:intergenic 30.0%
AAACAGAATGATAGGTAGAA+TGG - chr5_3:16394742-16394761 Msa0802210:CDS 30.0%
AACAAAAGACCAACACTTAA+TGG + chr5_3:16394785-16394804 None:intergenic 30.0%
TGAAAATTGATGTGCCAAAT+TGG - chr5_3:16394837-16394856 Msa0802210:intron 30.0%
GAAAATTGATGTGCCAAATT+GGG - chr5_3:16394838-16394857 Msa0802210:intron 30.0%
AAGAAGAAAGACACAAGAAA+TGG + chr5_3:16394866-16394885 None:intergenic 30.0%
!!! CTTGTGTCTTTCTTCTTTTT+TGG - chr5_3:16394869-16394888 Msa0802210:intron 30.0%
!!! AAAAGAATTGGCCTGTTTTT+TGG - chr5_3:16394981-16395000 Msa0802210:intron 30.0%
CTAAGTGATTTCCAAAAAAC+AGG + chr5_3:16394995-16395014 None:intergenic 30.0%
!!! GTTTTTTGGAAATCACTTAG+AGG - chr5_3:16394995-16395014 Msa0802210:intron 30.0%
! TCAATTTTAGACCATGATGT+TGG - chr5_3:16395122-16395141 Msa0802210:five_prime_UTR 30.0%
AAAGTCTAAATCCAACATCA+TGG + chr5_3:16395136-16395155 None:intergenic 30.0%
ATGATGTTGGATTTAGACTT+TGG - chr5_3:16395135-16395154 Msa0802210:five_prime_UTR 30.0%
GAGAGTGAGATAATAATAGG+TGG + chr5_3:16394141-16394160 None:intergenic 35.0%
CATGGTATGATATGTGTTGA+TGG + chr5_3:16394222-16394241 None:intergenic 35.0%
GAACTAGGATAGTACTACAT+AGG - chr5_3:16394388-16394407 Msa0802210:CDS 35.0%
AATAGAGAAGTGAGACTTGT+TGG + chr5_3:16394513-16394532 None:intergenic 35.0%
ACCTATACAAGCAACCTTAA+AGG - chr5_3:16394568-16394587 Msa0802210:CDS 35.0%
CCTATACAAGCAACCTTAAA+GGG - chr5_3:16394569-16394588 Msa0802210:CDS 35.0%
!!! TTGGTTTTTTTCTTTGGGGA+AGG + chr5_3:16394611-16394630 None:intergenic 35.0%
! TTTGAGGTTCTTGATTGTCT+TGG + chr5_3:16394630-16394649 None:intergenic 35.0%
ATTCTGTTTGTCACTACTTC+AGG + chr5_3:16394731-16394750 None:intergenic 35.0%
GTAGTGACAAACAGAATGAT+AGG - chr5_3:16394734-16394753 Msa0802210:CDS 35.0%
ACAAGAAATGGAACCCAATT+TGG + chr5_3:16394854-16394873 None:intergenic 35.0%
!!! TTTTTTGGGTCTGCACTTTT+AGG - chr5_3:16394884-16394903 Msa0802210:intron 35.0%
!! CACTTTTAGGAGTGAGTTAT+GGG - chr5_3:16394897-16394916 Msa0802210:intron 35.0%
!! TTTTGGAAATCACTTAGAGG+TGG - chr5_3:16394998-16395017 Msa0802210:intron 35.0%
! AAGCTGATTCCTTCTACAAA+TGG + chr5_3:16395081-16395100 None:intergenic 35.0%
GAGAGTGAGATAATAATAGG+TGG + chr5_3:16394141-16394160 None:intergenic 35.0%
CATGGTATGATATGTGTTGA+TGG + chr5_3:16394222-16394241 None:intergenic 35.0%
GAACTAGGATAGTACTACAT+AGG - chr5_3:16394388-16394407 Msa0802210:CDS 35.0%
AATAGAGAAGTGAGACTTGT+TGG + chr5_3:16394513-16394532 None:intergenic 35.0%
ACCTATACAAGCAACCTTAA+AGG - chr5_3:16394568-16394587 Msa0802210:CDS 35.0%
CCTATACAAGCAACCTTAAA+GGG - chr5_3:16394569-16394588 Msa0802210:CDS 35.0%
!!! TTGGTTTTTTTCTTTGGGGA+AGG + chr5_3:16394611-16394630 None:intergenic 35.0%
! TTTGAGGTTCTTGATTGTCT+TGG + chr5_3:16394630-16394649 None:intergenic 35.0%
ATTCTGTTTGTCACTACTTC+AGG + chr5_3:16394731-16394750 None:intergenic 35.0%
GTAGTGACAAACAGAATGAT+AGG - chr5_3:16394734-16394753 Msa0802210:CDS 35.0%
ACAAGAAATGGAACCCAATT+TGG + chr5_3:16394854-16394873 None:intergenic 35.0%
!!! TTTTTTGGGTCTGCACTTTT+AGG - chr5_3:16394884-16394903 Msa0802210:intron 35.0%
!! CACTTTTAGGAGTGAGTTAT+GGG - chr5_3:16394897-16394916 Msa0802210:intron 35.0%
!! TTTTGGAAATCACTTAGAGG+TGG - chr5_3:16394998-16395017 Msa0802210:intron 35.0%
! AAGCTGATTCCTTCTACAAA+TGG + chr5_3:16395081-16395100 None:intergenic 35.0%
ATAATAATAGGTGGCTCCAG+AGG + chr5_3:16394132-16394151 None:intergenic 40.0%
TCTCACTCTCACTATTGTAC+CGG - chr5_3:16394151-16394170 Msa0802210:three_prime_UTR 40.0%
! TGCGGATTGAGAATTGTAGA+GGG + chr5_3:16394260-16394279 None:intergenic 40.0%
! TTGCGGATTGAGAATTGTAG+AGG + chr5_3:16394261-16394280 None:intergenic 40.0%
CAATCCGCAATTTCTTCACA+AGG - chr5_3:16394271-16394290 Msa0802210:three_prime_UTR 40.0%
GGAACCTTGTGAAGAAATTG+CGG + chr5_3:16394278-16394297 None:intergenic 40.0%
!! CCCTTTAAGGTTGCTTGTAT+AGG + chr5_3:16394572-16394591 None:intergenic 40.0%
AAATCCCTTTGGACCCTTTA+AGG + chr5_3:16394585-16394604 None:intergenic 40.0%
TTAAAGGGTCCAAAGGGATT+TGG - chr5_3:16394584-16394603 Msa0802210:CDS 40.0%
GAAGAAGATAGAAGAGAGCA+AGG - chr5_3:16394698-16394717 Msa0802210:CDS 40.0%
GTAGAATGGCATTGTCTGTT+GGG - chr5_3:16394756-16394775 Msa0802210:CDS 40.0%
GTTGGGATTCCATTAAGTGT+TGG - chr5_3:16394773-16394792 Msa0802210:CDS 40.0%
!! GCACTTTTAGGAGTGAGTTA+TGG - chr5_3:16394896-16394915 Msa0802210:intron 40.0%
!! ATGGGATTGTTTCTGCTAGT+TGG - chr5_3:16394915-16394934 Msa0802210:intron 40.0%
!! TGGGATTGTTTCTGCTAGTT+GGG - chr5_3:16394916-16394935 Msa0802210:intron 40.0%
AGTTGGGATCCATTAAGAGA+AGG - chr5_3:16394932-16394951 Msa0802210:intron 40.0%
GTTGGGATCCATTAAGAGAA+GGG - chr5_3:16394933-16394952 Msa0802210:intron 40.0%
AAAAGGGACCCTTCTCTTAA+TGG + chr5_3:16394944-16394963 None:intergenic 40.0%
! ATTAAGAGAAGGGTCCCTTT+TGG - chr5_3:16394943-16394962 Msa0802210:intron 40.0%
! TTAAGAGAAGGGTCCCTTTT+GGG - chr5_3:16394944-16394963 Msa0802210:intron 40.0%
GGACTGAAGCTCAAAAGAAT+TGG - chr5_3:16394969-16394988 Msa0802210:intron 40.0%
ACTTAGAGGTGGATCTCAAA+AGG - chr5_3:16395009-16395028 Msa0802210:intron 40.0%
ATAATAATAGGTGGCTCCAG+AGG + chr5_3:16394132-16394151 None:intergenic 40.0%
TCTCACTCTCACTATTGTAC+CGG - chr5_3:16394151-16394170 Msa0802210:three_prime_UTR 40.0%
! TGCGGATTGAGAATTGTAGA+GGG + chr5_3:16394260-16394279 None:intergenic 40.0%
! TTGCGGATTGAGAATTGTAG+AGG + chr5_3:16394261-16394280 None:intergenic 40.0%
CAATCCGCAATTTCTTCACA+AGG - chr5_3:16394271-16394290 Msa0802210:three_prime_UTR 40.0%
GGAACCTTGTGAAGAAATTG+CGG + chr5_3:16394278-16394297 None:intergenic 40.0%
!! CCCTTTAAGGTTGCTTGTAT+AGG + chr5_3:16394572-16394591 None:intergenic 40.0%
AAATCCCTTTGGACCCTTTA+AGG + chr5_3:16394585-16394604 None:intergenic 40.0%
TTAAAGGGTCCAAAGGGATT+TGG - chr5_3:16394584-16394603 Msa0802210:CDS 40.0%
GAAGAAGATAGAAGAGAGCA+AGG - chr5_3:16394698-16394717 Msa0802210:CDS 40.0%
GTAGAATGGCATTGTCTGTT+GGG - chr5_3:16394756-16394775 Msa0802210:CDS 40.0%
GTTGGGATTCCATTAAGTGT+TGG - chr5_3:16394773-16394792 Msa0802210:CDS 40.0%
!! GCACTTTTAGGAGTGAGTTA+TGG - chr5_3:16394896-16394915 Msa0802210:intron 40.0%
!! ATGGGATTGTTTCTGCTAGT+TGG - chr5_3:16394915-16394934 Msa0802210:intron 40.0%
!! TGGGATTGTTTCTGCTAGTT+GGG - chr5_3:16394916-16394935 Msa0802210:intron 40.0%
AGTTGGGATCCATTAAGAGA+AGG - chr5_3:16394932-16394951 Msa0802210:intron 40.0%
GTTGGGATCCATTAAGAGAA+GGG - chr5_3:16394933-16394952 Msa0802210:intron 40.0%
AAAAGGGACCCTTCTCTTAA+TGG + chr5_3:16394944-16394963 None:intergenic 40.0%
! ATTAAGAGAAGGGTCCCTTT+TGG - chr5_3:16394943-16394962 Msa0802210:intron 40.0%
! TTAAGAGAAGGGTCCCTTTT+GGG - chr5_3:16394944-16394963 Msa0802210:intron 40.0%
GGACTGAAGCTCAAAAGAAT+TGG - chr5_3:16394969-16394988 Msa0802210:intron 40.0%
ACTTAGAGGTGGATCTCAAA+AGG - chr5_3:16395009-16395028 Msa0802210:intron 40.0%
TCCTTCACAACCTTATCCTC+TGG - chr5_3:16394113-16394132 Msa0802210:three_prime_UTR 45.0%
TCCAGAGGATAAGGTTGTGA+AGG + chr5_3:16394117-16394136 None:intergenic 45.0%
CTCACTCTCACTATTGTACC+GGG - chr5_3:16394152-16394171 Msa0802210:three_prime_UTR 45.0%
GGGAGTTGTAGTAGTCATCA+TGG + chr5_3:16394240-16394259 None:intergenic 45.0%
TGAGAGAAGTGAAGCTGTGA+TGG + chr5_3:16394542-16394561 None:intergenic 45.0%
AGCAACCTTAAAGGGTCCAA+AGG - chr5_3:16394577-16394596 Msa0802210:CDS 45.0%
GCAACCTTAAAGGGTCCAAA+GGG - chr5_3:16394578-16394597 Msa0802210:CDS 45.0%
GGTAGAATGGCATTGTCTGT+TGG - chr5_3:16394755-16394774 Msa0802210:CDS 45.0%
AGCTTCAGTCCATCCCAAAA+GGG + chr5_3:16394960-16394979 None:intergenic 45.0%
TCCTTCACAACCTTATCCTC+TGG - chr5_3:16394113-16394132 Msa0802210:three_prime_UTR 45.0%
TCCAGAGGATAAGGTTGTGA+AGG + chr5_3:16394117-16394136 None:intergenic 45.0%
CTCACTCTCACTATTGTACC+GGG - chr5_3:16394152-16394171 Msa0802210:three_prime_UTR 45.0%
GGGAGTTGTAGTAGTCATCA+TGG + chr5_3:16394240-16394259 None:intergenic 45.0%
TGAGAGAAGTGAAGCTGTGA+TGG + chr5_3:16394542-16394561 None:intergenic 45.0%
AGCAACCTTAAAGGGTCCAA+AGG - chr5_3:16394577-16394596 Msa0802210:CDS 45.0%
GCAACCTTAAAGGGTCCAAA+GGG - chr5_3:16394578-16394597 Msa0802210:CDS 45.0%
GGTAGAATGGCATTGTCTGT+TGG - chr5_3:16394755-16394774 Msa0802210:CDS 45.0%
AGCTTCAGTCCATCCCAAAA+GGG + chr5_3:16394960-16394979 None:intergenic 45.0%
ATAGGTGGCTCCAGAGGATA+AGG + chr5_3:16394126-16394145 None:intergenic 50.0%
GAGCTTCAGTCCATCCCAAA+AGG + chr5_3:16394961-16394980 None:intergenic 50.0%
ATAGGTGGCTCCAGAGGATA+AGG + chr5_3:16394126-16394145 None:intergenic 50.0%
GAGCTTCAGTCCATCCCAAA+AGG + chr5_3:16394961-16394980 None:intergenic 50.0%
GGGGAAGGTCCAAATCCCTT+TGG + chr5_3:16394596-16394615 None:intergenic 55.0%
!! GAGAAGGGTCCCTTTTGGGA+TGG - chr5_3:16394948-16394967 Msa0802210:intron 55.0%
GGGGAAGGTCCAAATCCCTT+TGG + chr5_3:16394596-16394615 None:intergenic 55.0%
!! GAGAAGGGTCCCTTTTGGGA+TGG - chr5_3:16394948-16394967 Msa0802210:intron 55.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 16394107 16395221 16394107 ID=Msa0802210;Name=Msa0802210
chr5_3 mRNA 16394107 16395221 16394107 ID=Msa0802210-mRNA-1;Parent=Msa0802210;Name=Msa0802210-mRNA-1;_AED=0.00;_eAED=0.00;_QI=132|1|1|1|0|0.5|2|185|203
chr5_3 exon 16394107 16394849 16394107 ID=Msa0802210-mRNA-1:exon:6898;Parent=Msa0802210-mRNA-1
chr5_3 exon 16395036 16395221 16395036 ID=Msa0802210-mRNA-1:exon:6897;Parent=Msa0802210-mRNA-1
chr5_3 five_prime_UTR 16395090 16395221 16395090 ID=Msa0802210-mRNA-1:five_prime_utr;Parent=Msa0802210-mRNA-1
chr5_3 CDS 16395036 16395089 16395036 ID=Msa0802210-mRNA-1:cds;Parent=Msa0802210-mRNA-1
chr5_3 CDS 16394292 16394849 16394292 ID=Msa0802210-mRNA-1:cds;Parent=Msa0802210-mRNA-1
chr5_3 three_prime_UTR 16394107 16394291 16394107 ID=Msa0802210-mRNA-1:three_prime_utr;Parent=Msa0802210-mRNA-1
Gene Sequence

>Msa0802210

ATGATGACTACTACAACTCCCTCTACAATTCTCAATCCGCAATTTCTTCACAAGCATGTTAGGCAAAACAACATTTATATACTCACCAACAAGTCTCACTTCTCTATTCATAGACCATCACAGCTTCACTTCTCTCACATTGTACCTATACAAGCAACCTTAAAGGGTCCAAAGGGATTTGGACCTTCCCCAAAGAAAAAAACCAAGACAATCAAGAACCTCAAAAAGAACAAACAAGAAGAAGATGAAGATGATGATGAAGAAGACGAAGAAGAAGAAGATAGAAGAGAGCAAGGAATCATTCCTGAAGTAGTGACAAACAGAATGATAGGTAGAATGGCATTGTCTGTTGGGATTCCATTAAGTGTTGGTCTTTTGTTCTTTCCATTTTTTTACTATCTTAAAGTTGGTTTGAAAATTGATGTGCCAAATTGGGTTCCATTTCTTGTGTCTTTCTTCTTTTTTGGGTCTGCACTTTTAGGAGTGAGTTATGGGATTGTTTCTGCTAGTTGGGATCCATTAAGAGAAGGGTCCCTTTTGGGATGGACTGAAGCTCAAAAGAATTGGCCTGTTTTTTGGAAATCACTTAGAGGTGGATCTCAAAAGGATTAG

Protein sequence

>Msa0802210

MMTTTTPSTILNPQFLHKHVRQNNIYILTNKSHFSIHRPSQLHFSHIVPIQATLKGPKGFGPSPKKKTKTIKNLKKNKQEEDEDDDEEDEEEEDRREQGIIPEVVTNRMIGRMALSVGIPLSVGLLFFPFFYYLKVGLKIDVPNWVPFLVSFFFFGSALLGVSYGIVSASWDPLREGSLLGWTEAQKNWPVFWKSLRGGSQKD*