AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0646580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0646580 MtrunA17_Chr4g0035001 98.795 83 1 0 1 83 1 83 1.34e-57 177
Msa0646580 MtrunA17_Chr4g0035051 90.244 82 8 0 2 83 4 85 1.90e-52 162
Msa0646580 MtrunA17_Chr4g0035031 84.337 83 13 0 2 84 4 86 1.06e-48 155
Msa0646580 MtrunA17_Chr2g0278661 57.955 88 36 1 1 87 1 88 1.75e-33 118
Msa0646580 MtrunA17_Chr4g0050781 55.814 86 37 1 1 85 1 86 9.86e-31 110
Msa0646580 MtrunA17_Chr3g0116631 54.321 81 37 0 6 86 206 286 4.44e-27 102
Msa0646580 MtrunA17_Chr3g0116631 33.000 100 67 0 7 106 110 209 2.85e-12 63.2
Msa0646580 MtrunA17_Chr4g0061451 52.500 80 38 0 7 86 43 122 2.53e-25 97.8
Msa0646580 MtrunA17_Chr4g0058151 53.086 81 38 0 6 86 216 296 1.01e-24 97.1
Msa0646580 MtrunA17_Chr4g0058151 35.577 104 64 1 5 108 121 221 1.01e-14 70.1
Msa0646580 MtrunA17_Chr1g0210241 49.383 81 41 0 5 85 6 86 4.24e-23 92.0
Msa0646580 MtrunA17_Chr3g0086861 50.633 79 39 0 7 85 45 123 5.03e-23 94.0
Msa0646580 MtrunA17_Chr1g0181111 51.250 80 39 0 7 86 197 276 3.84e-21 87.0
Msa0646580 MtrunA17_Chr7g0219021 53.782 119 55 0 7 125 41 159 1.45e-20 85.1
Msa0646580 MtrunA17_Chr3g0119311 42.683 82 47 0 7 88 37 118 2.23e-19 79.0
Msa0646580 MtrunA17_Chr7g0266751 39.583 96 56 1 4 97 30 125 8.10e-19 77.8
Msa0646580 MtrunA17_Chr1g0168601 40.244 82 49 0 2 83 149 230 8.42e-18 77.4
Msa0646580 MtrunA17_Chr3g0121631 48.760 121 51 2 7 127 37 146 1.88e-17 74.3
Msa0646580 MtrunA17_Chr4g0017401 40.000 115 58 5 3 108 12 124 1.09e-16 74.7
Msa0646580 MtrunA17_Chr3g0127751 32.117 137 79 3 7 132 27 160 1.37e-16 74.3
Msa0646580 MtrunA17_Chr7g0219031 45.455 66 36 0 7 72 41 106 2.19e-16 70.9
Msa0646580 MtrunA17_Chr3g0101061 37.975 79 47 1 7 85 41 117 1.40e-15 73.2
Msa0646580 MtrunA17_Chr7g0276531 50.847 59 29 0 7 65 19 77 6.31e-15 70.1
Msa0646580 MtrunA17_Chr2g0290191 37.975 79 47 1 7 85 5 81 7.03e-15 70.9
Msa0646580 MtrunA17_Chr3g0144311 40.741 81 46 2 3 82 25 104 7.55e-15 70.1
Msa0646580 MtrunA17_Chr1g0186351 32.911 79 51 1 7 85 7 83 1.32e-14 70.1
Msa0646580 MtrunA17_Chr1g0186351 32.955 88 58 1 7 94 113 199 7.21e-13 65.1
Msa0646580 MtrunA17_Chr7g0263001 39.241 79 48 0 7 85 36 114 1.52e-14 66.6
Msa0646580 MtrunA17_Chr5g0447761 36.709 79 48 1 7 85 7 83 1.66e-14 70.1
Msa0646580 MtrunA17_Chr5g0447761 32.258 93 62 1 7 99 107 198 5.78e-12 62.8
Msa0646580 MtrunA17_Chr6g0481071 37.500 88 55 0 7 94 96 183 2.10e-14 67.4
Msa0646580 MtrunA17_Chr4g0018581 46.667 75 40 0 8 82 453 527 2.33e-14 69.7
Msa0646580 MtrunA17_Chr5g0426311 43.421 76 42 1 7 82 17 91 2.53e-14 68.6
Msa0646580 MtrunA17_Chr3g0120721 34.328 134 83 3 7 139 107 236 2.75e-14 68.9
Msa0646580 MtrunA17_Chr3g0120721 31.068 103 69 1 7 109 19 119 1.92e-13 66.6
Msa0646580 MtrunA17_Chr6g0449481 35.417 96 60 1 7 102 46 139 2.93e-14 68.9
Msa0646580 MtrunA17_Chr6g0449481 33.333 132 74 2 7 124 134 265 3.33e-11 60.5
Msa0646580 MtrunA17_Chr2g0327921 36.585 82 52 0 7 88 8 89 3.57e-14 64.3
Msa0646580 MtrunA17_Chr4g0042161 36.275 102 59 2 1 99 46 144 6.85e-14 65.1
Msa0646580 MtrunA17_Chr8g0346011 42.308 78 40 2 7 82 38 112 8.07e-14 67.4
Msa0646580 MtrunA17_Chr3g0110211 35.514 107 68 1 8 113 114 220 3.74e-13 65.9
Msa0646580 MtrunA17_Chr4g0062931 35.256 156 91 5 8 158 9 159 4.19e-13 65.9
Msa0646580 MtrunA17_Chr3g0088511 43.243 74 42 0 7 80 33 106 6.47e-13 62.4
Msa0646580 MtrunA17_Chr4g0031091 38.356 73 45 0 7 79 34 106 9.62e-13 61.2
Msa0646580 MtrunA17_Chr5g0402191 40.000 80 44 2 7 85 5 81 1.17e-12 64.7
Msa0646580 MtrunA17_Chr3g0135111 35.714 98 58 2 7 101 11 106 2.17e-12 63.5
Msa0646580 MtrunA17_Chr3g0135111 27.778 126 89 2 7 132 118 241 8.66e-11 59.3
Msa0646580 MtrunA17_Chr4g0065741 37.662 77 48 0 7 83 72 148 3.77e-12 60.8
Msa0646580 MtrunA17_Chr7g0267571 36.667 90 57 0 2 91 208 297 6.96e-12 62.0
Msa0646580 MtrunA17_Chr4g0050441 38.462 78 48 0 6 83 16 93 1.26e-11 61.2
Msa0646580 MtrunA17_Chr5g0429941 38.554 83 50 1 1 83 12 93 1.27e-11 60.8
Msa0646580 MtrunA17_Chr8g0360551 37.209 86 48 3 7 90 74 155 5.39e-11 59.7
Msa0646580 MtrunA17_Chr5g0419351 34.343 99 65 0 8 106 12 110 8.50e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0646580 AT4G39260.3 74.725 91 23 0 1 91 1 91 3.02e-48 151
Msa0646580 AT2G21660.2 82.716 81 14 0 3 83 5 85 3.97e-46 148
Msa0646580 AT2G21660.1 82.716 81 14 0 3 83 5 85 6.64e-46 148
Msa0646580 AT4G39260.2 72.289 83 23 0 1 83 1 83 5.99e-43 139
Msa0646580 AT4G39260.1 72.289 83 23 0 1 83 1 83 2.19e-42 139
Msa0646580 AT4G39260.4 72.059 68 19 0 1 68 1 68 3.08e-34 116
Msa0646580 AT3G26420.1 35.321 218 80 4 3 159 4 221 8.15e-29 106
Msa0646580 AT5G61030.2 53.165 79 37 0 7 85 41 119 4.19e-26 101
Msa0646580 AT5G61030.1 53.165 79 37 0 7 85 41 119 4.19e-26 101
Msa0646580 AT3G23830.2 53.191 94 44 0 7 100 36 129 5.37e-26 96.7
Msa0646580 AT3G23830.1 53.191 94 44 0 7 100 36 129 5.37e-26 96.7
Msa0646580 AT5G50250.1 51.807 83 40 0 3 85 204 286 6.30e-25 97.4
Msa0646580 AT5G50250.1 40.000 90 54 0 5 94 112 201 1.01e-14 70.1
Msa0646580 AT4G13850.4 53.086 81 38 0 7 87 36 116 1.14e-24 92.8
Msa0646580 AT4G24770.1 50.000 82 41 0 6 87 244 325 1.31e-24 97.4
Msa0646580 AT4G24770.1 42.222 90 52 0 5 94 149 238 1.21e-15 73.2
Msa0646580 AT4G24770.2 50.000 82 41 0 6 87 244 325 1.31e-24 97.4
Msa0646580 AT4G24770.2 42.222 90 52 0 5 94 149 238 1.21e-15 73.2
Msa0646580 AT4G13850.1 52.525 99 47 0 7 105 36 134 3.75e-23 89.7
Msa0646580 AT5G04280.1 47.312 93 46 1 7 96 8 100 4.68e-23 93.2
Msa0646580 AT2G21690.1 49.438 89 40 1 2 85 3 91 9.31e-22 85.1
Msa0646580 AT2G37220.1 45.679 81 44 0 7 87 205 285 3.90e-21 87.4
Msa0646580 AT1G74230.1 57.647 85 35 1 7 91 35 118 4.56e-21 87.4
Msa0646580 AT3G53460.1 45.783 83 45 0 7 89 258 340 4.82e-21 88.2
Msa0646580 AT3G53460.3 45.783 83 45 0 7 89 258 340 4.82e-21 88.2
Msa0646580 AT3G53460.2 45.783 83 45 0 7 89 258 340 4.82e-21 88.2
Msa0646580 AT3G53460.4 45.783 83 45 0 7 89 279 361 7.04e-21 87.8
Msa0646580 AT5G06210.1 45.556 90 49 0 4 93 32 121 1.07e-20 83.2
Msa0646580 AT1G60650.2 41.121 107 62 1 4 109 10 116 1.12e-19 83.6
Msa0646580 AT1G60650.1 41.121 107 62 1 4 109 10 116 1.12e-19 83.6
Msa0646580 AT4G13850.2 46.552 116 49 1 7 122 36 138 3.21e-19 79.7
Msa0646580 AT4G13850.3 44.628 121 45 1 7 127 36 134 2.15e-18 77.0
Msa0646580 AT5G47320.1 46.753 77 41 0 7 83 32 108 2.56e-17 75.9
Msa0646580 AT1G18630.1 52.083 96 46 0 7 102 37 132 2.77e-17 74.7
Msa0646580 AT1G22330.1 43.137 102 52 3 7 103 18 118 4.79e-17 76.6
Msa0646580 AT2G46780.1 46.053 76 40 1 7 82 23 97 7.97e-17 76.3
Msa0646580 AT2G46780.2 46.053 76 40 1 7 82 23 97 7.97e-17 76.3
Msa0646580 AT4G13860.1 44.595 74 41 0 7 80 4 77 2.19e-16 70.5
Msa0646580 AT4G14300.1 37.975 79 47 1 7 85 7 83 3.55e-16 75.1
Msa0646580 AT4G14300.1 34.177 79 51 1 7 85 111 188 7.97e-11 59.7
Msa0646580 AT4G14300.2 37.975 79 47 1 7 85 7 83 3.55e-16 75.1
Msa0646580 AT4G14300.2 34.177 79 51 1 7 85 111 188 7.97e-11 59.7
Msa0646580 AT3G13224.3 38.710 93 51 2 1 89 1 91 4.35e-16 74.3
Msa0646580 AT3G13224.3 32.323 99 63 1 7 105 101 195 1.87e-14 70.1
Msa0646580 AT3G07810.2 33.028 109 71 1 7 115 7 113 8.47e-16 73.9
Msa0646580 AT3G07810.1 33.028 109 71 1 7 115 7 113 9.69e-16 73.9
Msa0646580 AT2G37510.1 45.946 74 40 0 7 80 35 108 1.04e-15 70.1
Msa0646580 AT5G59865.1 44.304 79 44 0 9 87 29 107 1.33e-15 68.9
Msa0646580 AT3G13224.2 39.759 83 48 1 7 89 20 100 1.44e-15 73.2
Msa0646580 AT3G13224.2 34.568 81 53 0 7 87 110 190 1.12e-14 70.5
Msa0646580 AT1G78260.1 44.444 81 43 2 3 82 13 92 1.65e-15 72.4
Msa0646580 AT1G76460.1 44.737 76 41 1 7 82 25 99 2.12e-15 72.0
Msa0646580 AT3G08000.1 44.048 84 47 0 7 90 42 125 2.64e-15 69.3
Msa0646580 AT4G26650.1 39.241 79 46 1 7 85 16 92 2.78e-15 72.4
Msa0646580 AT4G26650.2 39.241 79 46 1 7 85 13 89 2.97e-15 72.4
Msa0646580 AT1G78260.2 44.444 81 43 2 3 82 13 92 3.03e-15 71.2
Msa0646580 AT1G22910.1 36.364 99 56 3 3 94 9 107 4.12e-15 70.9
Msa0646580 AT1G20880.2 42.105 76 43 1 7 82 25 99 4.99e-15 70.9
Msa0646580 AT1G20880.3 42.105 76 43 1 7 82 25 99 4.99e-15 70.9
Msa0646580 AT1G20880.1 42.105 76 43 1 7 82 25 99 4.99e-15 70.9
Msa0646580 AT2G33410.1 32.558 86 56 1 7 92 7 90 5.83e-15 71.6
Msa0646580 AT2G33410.1 37.975 79 48 1 7 85 111 188 3.68e-12 63.5
Msa0646580 AT1G22910.2 36.364 99 56 3 3 94 9 107 6.11e-15 70.1
Msa0646580 AT5G55550.5 40.506 79 45 1 7 85 7 83 6.22e-15 71.6
Msa0646580 AT5G55550.4 40.506 79 45 1 7 85 7 83 6.22e-15 71.6
Msa0646580 AT5G55550.9 40.506 79 45 1 7 85 7 83 6.22e-15 71.6
Msa0646580 AT5G55550.7 40.506 79 45 1 7 85 7 83 6.22e-15 71.6
Msa0646580 AT5G55550.1 40.506 79 45 1 7 85 7 83 6.22e-15 71.6
Msa0646580 AT1G60000.1 40.244 82 49 0 2 83 173 254 7.05e-15 70.1
Msa0646580 AT5G55550.2 40.506 79 45 1 7 85 7 83 9.18e-15 71.2
Msa0646580 AT5G55550.3 40.506 79 45 1 7 85 7 83 9.18e-15 71.2
Msa0646580 AT5G55550.6 40.506 79 45 1 7 85 7 83 9.18e-15 71.2
Msa0646580 AT5G55550.11 40.506 79 45 1 7 85 7 83 9.18e-15 71.2
Msa0646580 AT1G33470.3 37.500 104 58 3 1 98 1 103 1.53e-14 68.9
Msa0646580 AT1G33470.1 37.500 104 58 3 1 98 1 103 1.79e-14 68.9
Msa0646580 AT1G33470.2 37.500 104 58 3 1 98 1 103 1.80e-14 68.9
Msa0646580 AT5G19960.1 43.038 79 44 1 8 86 9 86 2.42e-14 69.7
Msa0646580 AT1G22910.3 36.364 99 56 3 3 94 9 107 4.40e-14 68.9
Msa0646580 AT3G13224.1 39.286 84 49 1 7 90 20 101 1.09e-13 66.6
Msa0646580 AT5G55550.8 42.254 71 39 1 7 77 7 75 1.88e-13 67.4
Msa0646580 AT5G51300.1 42.667 75 43 0 5 79 479 553 1.93e-13 67.4
Msa0646580 AT5G51300.2 42.667 75 43 0 5 79 479 553 1.93e-13 67.4
Msa0646580 AT5G51300.3 42.667 75 43 0 5 79 479 553 1.93e-13 67.4
Msa0646580 AT5G55550.10 42.254 71 39 1 7 77 7 75 2.38e-13 67.0
Msa0646580 AT3G54770.3 42.105 76 43 1 7 82 18 92 2.76e-13 65.9
Msa0646580 AT3G46020.1 37.662 77 48 0 7 83 8 84 2.99e-13 62.8
Msa0646580 AT3G54770.1 42.105 76 43 1 7 82 18 92 2.99e-13 65.9
Msa0646580 AT5G47620.1 35.443 79 49 1 7 85 7 83 3.65e-13 66.6
Msa0646580 AT5G47620.2 35.443 79 49 1 7 85 7 83 3.65e-13 66.6
Msa0646580 AT5G47620.5 35.443 79 49 1 7 85 7 83 3.65e-13 66.6
Msa0646580 AT5G40490.1 36.458 96 59 1 7 102 43 136 3.80e-13 66.2
Msa0646580 AT5G40490.1 32.292 96 63 1 7 100 131 226 1.14e-11 62.0
Msa0646580 AT1G17640.2 34.783 92 60 0 7 98 158 249 4.07e-13 66.2
Msa0646580 AT1G17640.2 38.750 80 47 1 7 86 67 144 1.17e-12 64.7
Msa0646580 AT1G17640.1 34.783 92 60 0 7 98 158 249 4.07e-13 66.2
Msa0646580 AT1G17640.1 38.750 80 47 1 7 86 67 144 1.17e-12 64.7
Msa0646580 AT1G17640.3 34.783 92 60 0 7 98 158 249 4.07e-13 66.2
Msa0646580 AT1G17640.3 38.750 80 47 1 7 86 67 144 1.17e-12 64.7
Msa0646580 AT3G52150.2 40.741 81 48 0 2 82 173 253 6.28e-13 64.7
Msa0646580 AT3G52150.1 40.741 81 48 0 2 82 173 253 6.28e-13 64.7
Msa0646580 AT2G27330.1 31.579 76 52 0 9 84 24 99 6.86e-13 62.0
Msa0646580 AT1G73530.1 31.818 88 60 0 7 94 78 165 9.92e-13 63.2
Msa0646580 AT1G01080.1 37.349 83 47 2 1 81 207 286 1.61e-12 63.9
Msa0646580 AT5G53720.1 41.250 80 46 1 3 82 6 84 1.63e-12 60.8
Msa0646580 AT1G01080.2 37.349 83 47 2 1 81 208 287 1.74e-12 63.9
Msa0646580 AT5G64200.2 39.744 78 47 0 6 83 16 93 3.81e-12 63.2
Msa0646580 AT5G64200.1 39.744 78 47 0 6 83 16 93 3.81e-12 63.2
Msa0646580 AT3G14100.1 39.744 78 47 0 5 82 143 220 4.53e-12 63.2
Msa0646580 AT5G47620.4 36.709 79 44 2 7 81 7 83 7.13e-12 62.8
Msa0646580 AT4G13860.2 45.763 59 32 0 22 80 2 60 1.12e-11 57.8
Msa0646580 AT1G54080.1 39.744 78 47 0 5 82 147 224 2.05e-11 61.2
Msa0646580 AT5G11412.1 42.169 83 44 3 2 82 47 127 2.56e-11 59.3
Msa0646580 AT4G36960.1 39.759 83 46 2 4 85 1 80 3.52e-11 60.8
Msa0646580 AT4G36960.2 39.759 83 46 2 4 85 1 80 3.52e-11 60.8
Msa0646580 AT5G04280.3 46.774 62 30 1 38 96 1 62 3.58e-11 60.1
Msa0646580 AT5G04280.4 46.774 62 30 1 38 96 1 62 3.58e-11 60.1
Msa0646580 AT5G04280.5 46.774 62 30 1 38 96 1 62 3.58e-11 60.1
Msa0646580 AT5G04280.2 46.774 62 30 1 38 96 1 62 3.58e-11 60.1
Msa0646580 AT5G40490.2 35.052 97 59 3 7 100 114 209 4.46e-11 60.5
Msa0646580 AT2G18510.1 30.081 123 85 1 8 129 114 236 5.95e-11 60.1
Msa0646580 AT5G54580.1 41.026 78 46 0 8 85 58 135 6.31e-11 57.8
Msa0646580 AT1G01080.3 40.000 55 33 0 1 55 207 261 9.93e-11 58.9

Find 91 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAGGTGATGGTGGTTATT+AGG 0.231697 4_3:+52353290 Msa0646580:CDS
GGAGGTGGTGGTGGTGGATA+TGG 0.236629 4_3:+52353117 Msa0646580:CDS
GGTGGAAGCGGTGGTGGATA+TGG 0.268521 4_3:+52353159 Msa0646580:CDS
GGTGGAGGAGGTGGTGGATA+TGG 0.274998 4_3:+52353180 Msa0646580:CDS
ACTGGACGATCAAGAGGTTT+TGG 0.283486 4_3:+52352946 Msa0646580:CDS
ATCATTAACGATCGTGAAAC+TGG 0.286078 4_3:+52352928 Msa0646580:CDS
GGCCGTGGTGGCGGTGGATA+TGG 0.292757 4_3:+52353096 Msa0646580:CDS
CACTTAAAACACAGATAATA+TGG 0.313021 4_3:-52353488 None:intergenic
AGCAATGAACGGTCAGGATT+TGG 0.313573 4_3:+52353014 Msa0646580:CDS
TGCTTCAATGGCATCGTTCA+TGG 0.319166 4_3:-52352995 None:intergenic
GGAGGCGGTGGTGGAGGATA+TGG 0.330951 4_3:+52353246 Msa0646580:CDS
GGAGGAGGTGGTGGATATGG+TGG 0.343759 4_3:+52353183 Msa0646580:CDS
GGTGGATATGGAGGTGGTGG+TGG 0.355416 4_3:+52353108 Msa0646580:CDS
GGTGGATATGGTGGAGGAGG+TGG 0.362609 4_3:+52353171 Msa0646580:CDS
ATGATTGTTATTCTAGATGT+TGG 0.374897 4_3:+52353332 Msa0646580:three_prime_UTR
GGTGGAGAGCGTCGTGGATA+TGG 0.378333 4_3:+52353138 Msa0646580:CDS
CTGACCGTTCATTGCTTCAA+TGG 0.378604 4_3:-52353007 None:intergenic
GGCGGAGGAGGCCGTGGTGG+CGG 0.382681 4_3:+52353087 Msa0646580:CDS
GGATATGGTGGAGGAGGTGG+TGG 0.390425 4_3:+52353174 Msa0646580:CDS
GGCGGTGGTGGAGGATATGG+TGG 0.396144 4_3:+52353249 Msa0646580:CDS
TACAGCAGAGGAGGCGGTGG+TGG 0.397231 4_3:+52353237 Msa0646580:CDS
GGATATGGAGGTGGTGGTGG+TGG 0.398226 4_3:+52353111 Msa0646580:CDS
CGCTACCACGGCTCTGAGCT+TGG 0.401331 4_3:-52353059 None:intergenic
TTAGGGTTTGGGAGAGAGAG+AGG 0.402475 4_3:-52352439 None:intergenic
TGATTGTTATTCTAGATGTT+GGG 0.408580 4_3:+52353333 Msa0646580:three_prime_UTR
GGCGGTGGATATGGAGGTGG+TGG 0.414719 4_3:+52353105 Msa0646580:CDS
GGTGGTGACCGCCGTGGTGG+AGG 0.417792 4_3:+52353207 Msa0646580:CDS
GGTGGTGGTGGTGGATATGG+TGG 0.419545 4_3:+52353120 Msa0646580:CDS
GGGAGAGAGAGAGGTTATAG+AGG 0.421172 4_3:-52352430 None:intergenic
GGAGGTGGTGGATATGGTGG+TGG 0.423953 4_3:+52353186 Msa0646580:CDS
GGTAGCGGTGGTGGCGGAGG+AGG 0.428094 4_3:+52353075 Msa0646580:CDS
GACCGCCGTGGTGGAGGTGG+TGG 0.428431 4_3:+52353213 Msa0646580:CDS
CGTGGTAGCGGTGGTGGCGG+AGG 0.433194 4_3:+52353072 Msa0646580:CDS
CAGAGCCGTGGTAGCGGTGG+TGG 0.439087 4_3:+52353066 Msa0646580:CDS
GGTGGTGGCGGAGGAGGCCG+TGG 0.439963 4_3:+52353081 Msa0646580:CDS
GGTGACCGCCGTGGTGGAGG+TGG 0.440014 4_3:+52353210 Msa0646580:CDS
AGCAGAGGAGGCGGTGGTGG+AGG 0.451847 4_3:+52353240 Msa0646580:CDS
GGATATGGTGGAAGCGGTGG+TGG 0.454383 4_3:+52353153 Msa0646580:CDS
GGAGGAGGCCGTGGTGGCGG+TGG 0.459076 4_3:+52353090 Msa0646580:CDS
TTCAACATCAGCCATTGAAA+AGG 0.463880 4_3:-52352480 None:intergenic
AGCCGTGGTAGCGGTGGTGG+CGG 0.473368 4_3:+52353069 Msa0646580:CDS
GGAAGCGGTGGTGGATATGG+TGG 0.474255 4_3:+52353162 Msa0646580:CDS
GCTTCGTCGGAGGTCTTGCA+TGG 0.475042 4_3:+52352510 Msa0646580:CDS
GGTGGTGGAGGATATGGTGG+TGG 0.479646 4_3:+52353252 Msa0646580:CDS
GGTGGCGGAGGAGGCCGTGG+TGG 0.482575 4_3:+52353084 Msa0646580:CDS
GGTGGTGGATATGGTGGTGG+TGG 0.485578 4_3:+52353189 Msa0646580:CDS
ACAAAACACAGGTAATACTT+TGG 0.498137 4_3:-52353561 None:intergenic
GGTGGAGGATATGGTGGTGG+TGG 0.501369 4_3:+52353255 Msa0646580:CDS
GGATACAGCAGAGGAGGCGG+TGG 0.503411 4_3:+52353234 Msa0646580:CDS
CAGCCATTGAAAAGGGCAAA+GGG 0.507383 4_3:-52352472 None:intergenic
GGTGGATACAGCAGAGGAGG+CGG 0.513743 4_3:+52353231 Msa0646580:CDS
CATTGAAGCAATGAACGGTC+AGG 0.516837 4_3:+52353008 Msa0646580:CDS
CAAGACCTCCGACGAAGCAT+CGG 0.524569 4_3:-52352505 None:intergenic
GTTGAATACCGATGCTTCGT+CGG 0.525860 4_3:+52352497 Msa0646580:CDS
TCAACATCAGCCATTGAAAA+GGG 0.531904 4_3:-52352479 None:intergenic
TACAGCAGAGGAGGAGGTGA+TGG 0.532656 4_3:+52353279 Msa0646580:CDS
CAAGCTCAGAGCCGTGGTAG+CGG 0.533686 4_3:+52353060 Msa0646580:CDS
CGGCGAGATCGTTGATTCCA+AGG 0.539852 4_3:+52352574 Msa0646580:CDS
AGCGGTGGTGGATATGGTGG+AGG 0.541831 4_3:+52353165 Msa0646580:CDS
GAGAAAGCCTTCTCTCAATA+CGG 0.543855 4_3:+52352554 Msa0646580:CDS
TTTCTCGAGAGCATCGTTGT+CGG 0.548634 4_3:-52352537 None:intergenic
CGTGAAACTGGACGATCAAG+AGG 0.551662 4_3:+52352940 Msa0646580:CDS
CGTGGTGGCGGTGGATATGG+AGG 0.555369 4_3:+52353099 Msa0646580:CDS
GGTGGATACAGCAGAGGAGG+AGG 0.557224 4_3:+52353273 Msa0646580:CDS
GGTGGTGGATATGGTGGAGG+AGG 0.560670 4_3:+52353168 Msa0646580:CDS
CGTCGTGGATATGGTGGAAG+CGG 0.562578 4_3:+52353147 Msa0646580:CDS
GGTGGTGGATACAGCAGAGG+AGG 0.562608 4_3:+52353228 Msa0646580:CDS
CGTGGATATGGTGGAAGCGG+TGG 0.562637 4_3:+52353150 Msa0646580:CDS
GGTGGTGGTGACCGCCGTGG+TGG 0.562802 4_3:+52353204 Msa0646580:CDS
CTCCATATCCACCGCCACCA+CGG 0.564840 4_3:-52353098 None:intergenic
GCTCAGAGCCGTGGTAGCGG+TGG 0.565666 4_3:+52353063 Msa0646580:CDS
GGTGGCGGTGGATATGGAGG+TGG 0.573835 4_3:+52353102 Msa0646580:CDS
TCAGCCATTGAAAAGGGCAA+AGG 0.575941 4_3:-52352473 None:intergenic
GGTGGTGGATACAGCAGAGG+AGG 0.582601 4_3:+52353270 Msa0646580:CDS
CTCGAGAGCATCGTTGTCGG+TGG 0.585909 4_3:-52352534 None:intergenic
GAATACCGATGCTTCGTCGG+AGG 0.590495 4_3:+52352500 Msa0646580:CDS
CTTCGTCGGAGGTCTTGCAT+GGG 0.591814 4_3:+52352511 Msa0646580:CDS
CTCCGCCACCACCGCTACCA+CGG 0.595147 4_3:-52353071 None:intergenic
AGCAGAGGAGGAGGTGATGG+TGG 0.597479 4_3:+52353282 Msa0646580:CDS
ATGAACGGTCAGGATTTGGA+TGG 0.621464 4_3:+52353018 Msa0646580:CDS
GATCGTTATACACAAAACAC+AGG 0.633135 4_3:-52353572 None:intergenic
GGAGAGCGTCGTGGATATGG+TGG 0.640307 4_3:+52353141 Msa0646580:CDS
GTGAACCAAGCTCAGAGCCG+TGG 0.643330 4_3:+52353054 Msa0646580:CDS
GATCTCGCCGTATTGAGAGA+AGG 0.650761 4_3:-52352561 None:intergenic
GGTGGTGGTGGTGACCGCCG+TGG 0.665791 4_3:+52353201 Msa0646580:CDS
GGAGGTGGTGGATACAGCAG+AGG 0.669900 4_3:+52353225 Msa0646580:CDS
GGTGGTGGTGGATACAGCAG+AGG 0.670896 4_3:+52353267 Msa0646580:CDS
GATGCCATTGAAGCAATGAA+CGG 0.670960 4_3:+52353003 Msa0646580:CDS
TGTATCCACCACCTCCACCA+CGG 0.715403 4_3:-52353218 None:intergenic
GGATATGGTGGAGAGCGTCG+TGG 0.717480 4_3:+52353132 Msa0646580:CDS
ATCCACCACCTCCACCACGG+CGG 0.754503 4_3:-52353215 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAGTTTATTTTAACTAAT+TGG - chr4_3:52353541-52353560 None:intergenic 10.0%
!!! TTAAGTTTATTTTAACTAAT+TGG - chr4_3:52353541-52353560 None:intergenic 10.0%
!!! TTTTTTTTCTTTTGATGTTT+TGG + chr4_3:52352868-52352887 Msa0646580:intron 15.0%
!!! TTTTTTTCTTTTGATGTTTT+GGG + chr4_3:52352869-52352888 Msa0646580:intron 15.0%
!!! TTTTTTTTCTTTTGATGTTT+TGG + chr4_3:52352868-52352887 Msa0646580:intron 15.0%
!!! TTTTTTTCTTTTGATGTTTT+GGG + chr4_3:52352869-52352888 Msa0646580:intron 15.0%
!! ATGATTGTTATTCTAGATGT+TGG + chr4_3:52353332-52353351 Msa0646580:three_prime_UTR 25.0%
!! TGATTGTTATTCTAGATGTT+GGG + chr4_3:52353333-52353352 Msa0646580:three_prime_UTR 25.0%
! CACTTAAAACACAGATAATA+TGG - chr4_3:52353491-52353510 None:intergenic 25.0%
!!! GTTTATTTTAACTAATTGGC+AGG - chr4_3:52353537-52353556 None:intergenic 25.0%
!! ATGATTGTTATTCTAGATGT+TGG + chr4_3:52353332-52353351 Msa0646580:three_prime_UTR 25.0%
!! TGATTGTTATTCTAGATGTT+GGG + chr4_3:52353333-52353352 Msa0646580:three_prime_UTR 25.0%
! CACTTAAAACACAGATAATA+TGG - chr4_3:52353491-52353510 None:intergenic 25.0%
!!! GTTTATTTTAACTAATTGGC+AGG - chr4_3:52353537-52353556 None:intergenic 25.0%
GAAAAACTGAATTAGGGTTT+GGG - chr4_3:52352453-52352472 None:intergenic 30.0%
CAAAGGGAAAAACTGAATTA+GGG - chr4_3:52352459-52352478 None:intergenic 30.0%
!!! GATTTTGATTCGGATTTCTA+TGG + chr4_3:52352636-52352655 Msa0646580:intron 30.0%
AACAAAAGTTGAAGATCGAT+CGG + chr4_3:52352812-52352831 Msa0646580:intron 30.0%
!!! TTTTGGGTTTTATTCTGATC+TGG + chr4_3:52352885-52352904 Msa0646580:intron 30.0%
! TTTTTGTCACTGTTCTGTTA+TGG + chr4_3:52353375-52353394 Msa0646580:three_prime_UTR 30.0%
ACAAAACACAGGTAATACTT+TGG - chr4_3:52353564-52353583 None:intergenic 30.0%
GAAAAACTGAATTAGGGTTT+GGG - chr4_3:52352453-52352472 None:intergenic 30.0%
CAAAGGGAAAAACTGAATTA+GGG - chr4_3:52352459-52352478 None:intergenic 30.0%
!!! GATTTTGATTCGGATTTCTA+TGG + chr4_3:52352636-52352655 Msa0646580:intron 30.0%
AACAAAAGTTGAAGATCGAT+CGG + chr4_3:52352812-52352831 Msa0646580:intron 30.0%
!!! TTTTGGGTTTTATTCTGATC+TGG + chr4_3:52352885-52352904 Msa0646580:intron 30.0%
! TTTTTGTCACTGTTCTGTTA+TGG + chr4_3:52353375-52353394 Msa0646580:three_prime_UTR 30.0%
ACAAAACACAGGTAATACTT+TGG - chr4_3:52353564-52353583 None:intergenic 30.0%
GGAAAAACTGAATTAGGGTT+TGG - chr4_3:52352454-52352473 None:intergenic 35.0%
GCAAAGGGAAAAACTGAATT+AGG - chr4_3:52352460-52352479 None:intergenic 35.0%
TCAACATCAGCCATTGAAAA+GGG - chr4_3:52352482-52352501 None:intergenic 35.0%
TTCAACATCAGCCATTGAAA+AGG - chr4_3:52352483-52352502 None:intergenic 35.0%
!!! GATCTGACACGATTTTGATT+CGG + chr4_3:52352626-52352645 Msa0646580:intron 35.0%
TATTACTCACTCACACCAAT+AGG + chr4_3:52352768-52352787 Msa0646580:intron 35.0%
AAGAAGATGAACGTACCTAT+TGG - chr4_3:52352786-52352805 None:intergenic 35.0%
AAGATCGATCGGTTACTATT+CGG + chr4_3:52352823-52352842 Msa0646580:intron 35.0%
!! ACTATTCGGTTCTAGATCTA+TGG + chr4_3:52352837-52352856 Msa0646580:intron 35.0%
ATCATTAACGATCGTGAAAC+TGG + chr4_3:52352928-52352947 Msa0646580:CDS 35.0%
!! CGTTTTGATGTGTCTCTTAT+TGG + chr4_3:52353401-52353420 Msa0646580:three_prime_UTR 35.0%
GATCGTTATACACAAAACAC+AGG - chr4_3:52353575-52353594 None:intergenic 35.0%
GGAAAAACTGAATTAGGGTT+TGG - chr4_3:52352454-52352473 None:intergenic 35.0%
GCAAAGGGAAAAACTGAATT+AGG - chr4_3:52352460-52352479 None:intergenic 35.0%
TCAACATCAGCCATTGAAAA+GGG - chr4_3:52352482-52352501 None:intergenic 35.0%
TTCAACATCAGCCATTGAAA+AGG - chr4_3:52352483-52352502 None:intergenic 35.0%
!!! GATCTGACACGATTTTGATT+CGG + chr4_3:52352626-52352645 Msa0646580:intron 35.0%
TATTACTCACTCACACCAAT+AGG + chr4_3:52352768-52352787 Msa0646580:intron 35.0%
AAGAAGATGAACGTACCTAT+TGG - chr4_3:52352786-52352805 None:intergenic 35.0%
AAGATCGATCGGTTACTATT+CGG + chr4_3:52352823-52352842 Msa0646580:intron 35.0%
!! ACTATTCGGTTCTAGATCTA+TGG + chr4_3:52352837-52352856 Msa0646580:intron 35.0%
ATCATTAACGATCGTGAAAC+TGG + chr4_3:52352928-52352947 Msa0646580:CDS 35.0%
!! CGTTTTGATGTGTCTCTTAT+TGG + chr4_3:52353401-52353420 Msa0646580:three_prime_UTR 35.0%
GATCGTTATACACAAAACAC+AGG - chr4_3:52353575-52353594 None:intergenic 35.0%
! TTTCCCTTTGCCCTTTTCAA+TGG + chr4_3:52352469-52352488 Msa0646580:exon 40.0%
GAGAAAGCCTTCTCTCAATA+CGG + chr4_3:52352554-52352573 Msa0646580:CDS 40.0%
CAGAGTAACACAGAACAGAT+CGG - chr4_3:52352684-52352703 None:intergenic 40.0%
GATGCCATTGAAGCAATGAA+CGG + chr4_3:52353003-52353022 Msa0646580:CDS 40.0%
! TTTCCCTTTGCCCTTTTCAA+TGG + chr4_3:52352469-52352488 Msa0646580:exon 40.0%
GAGAAAGCCTTCTCTCAATA+CGG + chr4_3:52352554-52352573 Msa0646580:CDS 40.0%
CAGAGTAACACAGAACAGAT+CGG - chr4_3:52352684-52352703 None:intergenic 40.0%
GATGCCATTGAAGCAATGAA+CGG + chr4_3:52353003-52353022 Msa0646580:CDS 40.0%
CAGCCATTGAAAAGGGCAAA+GGG - chr4_3:52352475-52352494 None:intergenic 45.0%
TCAGCCATTGAAAAGGGCAA+AGG - chr4_3:52352476-52352495 None:intergenic 45.0%
GTTGAATACCGATGCTTCGT+CGG + chr4_3:52352497-52352516 Msa0646580:CDS 45.0%
!! TTTCTCGAGAGCATCGTTGT+CGG - chr4_3:52352540-52352559 None:intergenic 45.0%
TCGGAGATCACAGATCAGAA+AGG - chr4_3:52352665-52352684 None:intergenic 45.0%
! ACTGGACGATCAAGAGGTTT+TGG + chr4_3:52352946-52352965 Msa0646580:CDS 45.0%
TGCTTCAATGGCATCGTTCA+TGG - chr4_3:52352998-52353017 None:intergenic 45.0%
CTGACCGTTCATTGCTTCAA+TGG - chr4_3:52353010-52353029 None:intergenic 45.0%
CATTGAAGCAATGAACGGTC+AGG + chr4_3:52353008-52353027 Msa0646580:CDS 45.0%
AGCAATGAACGGTCAGGATT+TGG + chr4_3:52353014-52353033 Msa0646580:CDS 45.0%
ATGAACGGTCAGGATTTGGA+TGG + chr4_3:52353018-52353037 Msa0646580:CDS 45.0%
!! AGGAGGTGATGGTGGTTATT+AGG + chr4_3:52353290-52353309 Msa0646580:CDS 45.0%
CAGCCATTGAAAAGGGCAAA+GGG - chr4_3:52352475-52352494 None:intergenic 45.0%
TCAGCCATTGAAAAGGGCAA+AGG - chr4_3:52352476-52352495 None:intergenic 45.0%
GTTGAATACCGATGCTTCGT+CGG + chr4_3:52352497-52352516 Msa0646580:CDS 45.0%
!! TTTCTCGAGAGCATCGTTGT+CGG - chr4_3:52352540-52352559 None:intergenic 45.0%
TCGGAGATCACAGATCAGAA+AGG - chr4_3:52352665-52352684 None:intergenic 45.0%
! ACTGGACGATCAAGAGGTTT+TGG + chr4_3:52352946-52352965 Msa0646580:CDS 45.0%
TGCTTCAATGGCATCGTTCA+TGG - chr4_3:52352998-52353017 None:intergenic 45.0%
CTGACCGTTCATTGCTTCAA+TGG - chr4_3:52353010-52353029 None:intergenic 45.0%
CATTGAAGCAATGAACGGTC+AGG + chr4_3:52353008-52353027 Msa0646580:CDS 45.0%
AGCAATGAACGGTCAGGATT+TGG + chr4_3:52353014-52353033 Msa0646580:CDS 45.0%
ATGAACGGTCAGGATTTGGA+TGG + chr4_3:52353018-52353037 Msa0646580:CDS 45.0%
!! AGGAGGTGATGGTGGTTATT+AGG + chr4_3:52353290-52353309 Msa0646580:CDS 45.0%
GGGAGAGAGAGAGGTTATAG+AGG - chr4_3:52352433-52352452 None:intergenic 50.0%
TTAGGGTTTGGGAGAGAGAG+AGG - chr4_3:52352442-52352461 None:intergenic 50.0%
GATCTCGCCGTATTGAGAGA+AGG - chr4_3:52352564-52352583 None:intergenic 50.0%
TGCAAGCAACAAACGGACCT+TGG - chr4_3:52352594-52352613 None:intergenic 50.0%
! AAGGTCCGTTTGTTGCTTGC+AGG + chr4_3:52352593-52352612 Msa0646580:intron 50.0%
CGAAGCCTGCAAGCAACAAA+CGG - chr4_3:52352601-52352620 None:intergenic 50.0%
! CGTTTGTTGCTTGCAGGCTT+CGG + chr4_3:52352599-52352618 Msa0646580:intron 50.0%
CGTGAAACTGGACGATCAAG+AGG + chr4_3:52352940-52352959 Msa0646580:CDS 50.0%
GGGAGAGAGAGAGGTTATAG+AGG - chr4_3:52352433-52352452 None:intergenic 50.0%
TTAGGGTTTGGGAGAGAGAG+AGG - chr4_3:52352442-52352461 None:intergenic 50.0%
GATCTCGCCGTATTGAGAGA+AGG - chr4_3:52352564-52352583 None:intergenic 50.0%
TGCAAGCAACAAACGGACCT+TGG - chr4_3:52352594-52352613 None:intergenic 50.0%
! AAGGTCCGTTTGTTGCTTGC+AGG + chr4_3:52352593-52352612 Msa0646580:intron 50.0%
CGAAGCCTGCAAGCAACAAA+CGG - chr4_3:52352601-52352620 None:intergenic 50.0%
! CGTTTGTTGCTTGCAGGCTT+CGG + chr4_3:52352599-52352618 Msa0646580:intron 50.0%
CGTGAAACTGGACGATCAAG+AGG + chr4_3:52352940-52352959 Msa0646580:CDS 50.0%
GAATACCGATGCTTCGTCGG+AGG + chr4_3:52352500-52352519 Msa0646580:CDS 55.0%
CAAGACCTCCGACGAAGCAT+CGG - chr4_3:52352508-52352527 None:intergenic 55.0%
CTTCGTCGGAGGTCTTGCAT+GGG + chr4_3:52352511-52352530 Msa0646580:CDS 55.0%
!! CGGCGAGATCGTTGATTCCA+AGG + chr4_3:52352574-52352593 Msa0646580:CDS 55.0%
GTTGCTTGCAGGCTTCGGAT+CGG + chr4_3:52352604-52352623 Msa0646580:intron 55.0%
! CGTCGTGGATATGGTGGAAG+CGG + chr4_3:52353147-52353166 Msa0646580:CDS 55.0%
TGTATCCACCACCTCCACCA+CGG - chr4_3:52353221-52353240 None:intergenic 55.0%
TACAGCAGAGGAGGAGGTGA+TGG + chr4_3:52353279-52353298 Msa0646580:CDS 55.0%
GAATACCGATGCTTCGTCGG+AGG + chr4_3:52352500-52352519 Msa0646580:CDS 55.0%
CAAGACCTCCGACGAAGCAT+CGG - chr4_3:52352508-52352527 None:intergenic 55.0%
CTTCGTCGGAGGTCTTGCAT+GGG + chr4_3:52352511-52352530 Msa0646580:CDS 55.0%
!! CGGCGAGATCGTTGATTCCA+AGG + chr4_3:52352574-52352593 Msa0646580:CDS 55.0%
GTTGCTTGCAGGCTTCGGAT+CGG + chr4_3:52352604-52352623 Msa0646580:intron 55.0%
! CGTCGTGGATATGGTGGAAG+CGG + chr4_3:52353147-52353166 Msa0646580:CDS 55.0%
TGTATCCACCACCTCCACCA+CGG - chr4_3:52353221-52353240 None:intergenic 55.0%
TACAGCAGAGGAGGAGGTGA+TGG + chr4_3:52353279-52353298 Msa0646580:CDS 55.0%
GCTTCGTCGGAGGTCTTGCA+TGG + chr4_3:52352510-52352529 Msa0646580:CDS 60.0%
!! CTCGAGAGCATCGTTGTCGG+TGG - chr4_3:52352537-52352556 None:intergenic 60.0%
GTGAACCAAGCTCAGAGCCG+TGG + chr4_3:52353054-52353073 Msa0646580:CDS 60.0%
CAAGCTCAGAGCCGTGGTAG+CGG + chr4_3:52353060-52353079 Msa0646580:CDS 60.0%
CTCCATATCCACCGCCACCA+CGG - chr4_3:52353101-52353120 None:intergenic 60.0%
! GGTGGATATGGAGGTGGTGG+TGG + chr4_3:52353108-52353127 Msa0646580:CDS 60.0%
!! GGATATGGAGGTGGTGGTGG+TGG + chr4_3:52353111-52353130 Msa0646580:CDS 60.0%
!! GGAGGTGGTGGTGGTGGATA+TGG + chr4_3:52353117-52353136 Msa0646580:CDS 60.0%
!! GGTGGTGGTGGTGGATATGG+TGG + chr4_3:52353120-52353139 Msa0646580:CDS 60.0%
!! GGATATGGTGGAGAGCGTCG+TGG + chr4_3:52353132-52353151 Msa0646580:CDS 60.0%
!! GGTGGAGAGCGTCGTGGATA+TGG + chr4_3:52353138-52353157 Msa0646580:CDS 60.0%
!! GGAGAGCGTCGTGGATATGG+TGG + chr4_3:52353141-52353160 Msa0646580:CDS 60.0%
! CGTGGATATGGTGGAAGCGG+TGG + chr4_3:52353150-52353169 Msa0646580:CDS 60.0%
! GGATATGGTGGAAGCGGTGG+TGG + chr4_3:52353153-52353172 Msa0646580:CDS 60.0%
!! GGTGGAAGCGGTGGTGGATA+TGG + chr4_3:52353159-52353178 Msa0646580:CDS 60.0%
!! GGAAGCGGTGGTGGATATGG+TGG + chr4_3:52353162-52353181 Msa0646580:CDS 60.0%
!! AGCGGTGGTGGATATGGTGG+AGG + chr4_3:52353165-52353184 Msa0646580:CDS 60.0%
!! GGTGGTGGATATGGTGGAGG+AGG + chr4_3:52353168-52353187 Msa0646580:CDS 60.0%
! GGTGGATATGGTGGAGGAGG+TGG + chr4_3:52353171-52353190 Msa0646580:CDS 60.0%
! GGATATGGTGGAGGAGGTGG+TGG + chr4_3:52353174-52353193 Msa0646580:CDS 60.0%
!! GGTGGAGGAGGTGGTGGATA+TGG + chr4_3:52353180-52353199 Msa0646580:CDS 60.0%
!! GGAGGAGGTGGTGGATATGG+TGG + chr4_3:52353183-52353202 Msa0646580:CDS 60.0%
!! GGAGGTGGTGGATATGGTGG+TGG + chr4_3:52353186-52353205 Msa0646580:CDS 60.0%
!! GGTGGTGGATATGGTGGTGG+TGG + chr4_3:52353189-52353208 Msa0646580:CDS 60.0%
!! GGAGGTGGTGGATACAGCAG+AGG + chr4_3:52353225-52353244 Msa0646580:CDS 60.0%
!! GGTGGTGGATACAGCAGAGG+AGG + chr4_3:52353228-52353247 Msa0646580:CDS 60.0%
GGTGGATACAGCAGAGGAGG+CGG + chr4_3:52353231-52353250 Msa0646580:CDS 60.0%
!! GGTGGTGGAGGATATGGTGG+TGG + chr4_3:52353252-52353271 Msa0646580:CDS 60.0%
!! GGTGGAGGATATGGTGGTGG+TGG + chr4_3:52353255-52353274 Msa0646580:CDS 60.0%
!! GGTGGTGGTGGATACAGCAG+AGG + chr4_3:52353267-52353286 Msa0646580:CDS 60.0%
!! GGTGGTGGATACAGCAGAGG+AGG + chr4_3:52353228-52353247 Msa0646580:CDS 60.0%
GGTGGATACAGCAGAGGAGG+AGG + chr4_3:52353231-52353250 Msa0646580:CDS 60.0%
! AGCAGAGGAGGAGGTGATGG+TGG + chr4_3:52353282-52353301 Msa0646580:CDS 60.0%
GCTTCGTCGGAGGTCTTGCA+TGG + chr4_3:52352510-52352529 Msa0646580:CDS 60.0%
!! CTCGAGAGCATCGTTGTCGG+TGG - chr4_3:52352537-52352556 None:intergenic 60.0%
GTGAACCAAGCTCAGAGCCG+TGG + chr4_3:52353054-52353073 Msa0646580:CDS 60.0%
CAAGCTCAGAGCCGTGGTAG+CGG + chr4_3:52353060-52353079 Msa0646580:CDS 60.0%
CTCCATATCCACCGCCACCA+CGG - chr4_3:52353101-52353120 None:intergenic 60.0%
! GGTGGATATGGAGGTGGTGG+TGG + chr4_3:52353108-52353127 Msa0646580:CDS 60.0%
!! GGATATGGAGGTGGTGGTGG+TGG + chr4_3:52353111-52353130 Msa0646580:CDS 60.0%
!! GGAGGTGGTGGTGGTGGATA+TGG + chr4_3:52353117-52353136 Msa0646580:CDS 60.0%
!! GGTGGTGGTGGTGGATATGG+TGG + chr4_3:52353120-52353139 Msa0646580:CDS 60.0%
!! GGATATGGTGGAGAGCGTCG+TGG + chr4_3:52353132-52353151 Msa0646580:CDS 60.0%
!! GGTGGAGAGCGTCGTGGATA+TGG + chr4_3:52353138-52353157 Msa0646580:CDS 60.0%
!! GGAGAGCGTCGTGGATATGG+TGG + chr4_3:52353141-52353160 Msa0646580:CDS 60.0%
! CGTGGATATGGTGGAAGCGG+TGG + chr4_3:52353150-52353169 Msa0646580:CDS 60.0%
! GGATATGGTGGAAGCGGTGG+TGG + chr4_3:52353153-52353172 Msa0646580:CDS 60.0%
!! GGTGGAAGCGGTGGTGGATA+TGG + chr4_3:52353159-52353178 Msa0646580:CDS 60.0%
!! GGAAGCGGTGGTGGATATGG+TGG + chr4_3:52353162-52353181 Msa0646580:CDS 60.0%
!! AGCGGTGGTGGATATGGTGG+AGG + chr4_3:52353165-52353184 Msa0646580:CDS 60.0%
!! GGTGGTGGATATGGTGGAGG+AGG + chr4_3:52353168-52353187 Msa0646580:CDS 60.0%
! GGTGGATATGGTGGAGGAGG+TGG + chr4_3:52353171-52353190 Msa0646580:CDS 60.0%
! GGATATGGTGGAGGAGGTGG+TGG + chr4_3:52353174-52353193 Msa0646580:CDS 60.0%
!! GGTGGAGGAGGTGGTGGATA+TGG + chr4_3:52353180-52353199 Msa0646580:CDS 60.0%
!! GGAGGAGGTGGTGGATATGG+TGG + chr4_3:52353183-52353202 Msa0646580:CDS 60.0%
!! GGAGGTGGTGGATATGGTGG+TGG + chr4_3:52353186-52353205 Msa0646580:CDS 60.0%
!! GGTGGTGGATATGGTGGTGG+TGG + chr4_3:52353189-52353208 Msa0646580:CDS 60.0%
!! GGAGGTGGTGGATACAGCAG+AGG + chr4_3:52353225-52353244 Msa0646580:CDS 60.0%
!! GGTGGTGGATACAGCAGAGG+AGG + chr4_3:52353228-52353247 Msa0646580:CDS 60.0%
GGTGGATACAGCAGAGGAGG+CGG + chr4_3:52353231-52353250 Msa0646580:CDS 60.0%
!! GGTGGTGGAGGATATGGTGG+TGG + chr4_3:52353252-52353271 Msa0646580:CDS 60.0%
!! GGTGGAGGATATGGTGGTGG+TGG + chr4_3:52353255-52353274 Msa0646580:CDS 60.0%
!! GGTGGTGGTGGATACAGCAG+AGG + chr4_3:52353267-52353286 Msa0646580:CDS 60.0%
!! GGTGGTGGATACAGCAGAGG+AGG + chr4_3:52353228-52353247 Msa0646580:CDS 60.0%
GGTGGATACAGCAGAGGAGG+AGG + chr4_3:52353231-52353250 Msa0646580:CDS 60.0%
! AGCAGAGGAGGAGGTGATGG+TGG + chr4_3:52353282-52353301 Msa0646580:CDS 60.0%
!! CGCTACCACGGCTCTGAGCT+TGG - chr4_3:52353062-52353081 None:intergenic 65.0%
!! CGTGGTGGCGGTGGATATGG+AGG + chr4_3:52353099-52353118 Msa0646580:CDS 65.0%
! GGTGGCGGTGGATATGGAGG+TGG + chr4_3:52353102-52353121 Msa0646580:CDS 65.0%
GGCGGTGGATATGGAGGTGG+TGG + chr4_3:52353105-52353124 Msa0646580:CDS 65.0%
ATCCACCACCTCCACCACGG+CGG - chr4_3:52353218-52353237 None:intergenic 65.0%
GGATACAGCAGAGGAGGCGG+TGG + chr4_3:52353234-52353253 Msa0646580:CDS 65.0%
TACAGCAGAGGAGGCGGTGG+TGG + chr4_3:52353237-52353256 Msa0646580:CDS 65.0%
!! GGAGGCGGTGGTGGAGGATA+TGG + chr4_3:52353246-52353265 Msa0646580:CDS 65.0%
!! GGCGGTGGTGGAGGATATGG+TGG + chr4_3:52353249-52353268 Msa0646580:CDS 65.0%
!! CGCTACCACGGCTCTGAGCT+TGG - chr4_3:52353062-52353081 None:intergenic 65.0%
!! CGTGGTGGCGGTGGATATGG+AGG + chr4_3:52353099-52353118 Msa0646580:CDS 65.0%
! GGTGGCGGTGGATATGGAGG+TGG + chr4_3:52353102-52353121 Msa0646580:CDS 65.0%
GGCGGTGGATATGGAGGTGG+TGG + chr4_3:52353105-52353124 Msa0646580:CDS 65.0%
ATCCACCACCTCCACCACGG+CGG - chr4_3:52353218-52353237 None:intergenic 65.0%
GGATACAGCAGAGGAGGCGG+TGG + chr4_3:52353234-52353253 Msa0646580:CDS 65.0%
TACAGCAGAGGAGGCGGTGG+TGG + chr4_3:52353237-52353256 Msa0646580:CDS 65.0%
!! GGAGGCGGTGGTGGAGGATA+TGG + chr4_3:52353246-52353265 Msa0646580:CDS 65.0%
!! GGCGGTGGTGGAGGATATGG+TGG + chr4_3:52353249-52353268 Msa0646580:CDS 65.0%
!! GCTCAGAGCCGTGGTAGCGG+TGG + chr4_3:52353063-52353082 Msa0646580:CDS 70.0%
!! CAGAGCCGTGGTAGCGGTGG+TGG + chr4_3:52353066-52353085 Msa0646580:CDS 70.0%
!! AGCCGTGGTAGCGGTGGTGG+CGG + chr4_3:52353069-52353088 Msa0646580:CDS 70.0%
CTCCGCCACCACCGCTACCA+CGG - chr4_3:52353074-52353093 None:intergenic 70.0%
!! GGCCGTGGTGGCGGTGGATA+TGG + chr4_3:52353096-52353115 Msa0646580:CDS 70.0%
! AGCAGAGGAGGCGGTGGTGG+AGG + chr4_3:52353240-52353259 Msa0646580:CDS 70.0%
!! GCTCAGAGCCGTGGTAGCGG+TGG + chr4_3:52353063-52353082 Msa0646580:CDS 70.0%
!! CAGAGCCGTGGTAGCGGTGG+TGG + chr4_3:52353066-52353085 Msa0646580:CDS 70.0%
!! AGCCGTGGTAGCGGTGGTGG+CGG + chr4_3:52353069-52353088 Msa0646580:CDS 70.0%
CTCCGCCACCACCGCTACCA+CGG - chr4_3:52353074-52353093 None:intergenic 70.0%
!! GGCCGTGGTGGCGGTGGATA+TGG + chr4_3:52353096-52353115 Msa0646580:CDS 70.0%
! AGCAGAGGAGGCGGTGGTGG+AGG + chr4_3:52353240-52353259 Msa0646580:CDS 70.0%
!! CGTGGTAGCGGTGGTGGCGG+AGG + chr4_3:52353072-52353091 Msa0646580:CDS 75.0%
!! GGTAGCGGTGGTGGCGGAGG+AGG + chr4_3:52353075-52353094 Msa0646580:CDS 75.0%
!! GGTGGTGGTGGTGACCGCCG+TGG + chr4_3:52353201-52353220 Msa0646580:CDS 75.0%
! GGTGGTGGTGACCGCCGTGG+TGG + chr4_3:52353204-52353223 Msa0646580:CDS 75.0%
GGTGGTGACCGCCGTGGTGG+AGG + chr4_3:52353207-52353226 Msa0646580:CDS 75.0%
! GGTGACCGCCGTGGTGGAGG+TGG + chr4_3:52353210-52353229 Msa0646580:CDS 75.0%
! GACCGCCGTGGTGGAGGTGG+TGG + chr4_3:52353213-52353232 Msa0646580:CDS 75.0%
!! CGTGGTAGCGGTGGTGGCGG+AGG + chr4_3:52353072-52353091 Msa0646580:CDS 75.0%
!! GGTAGCGGTGGTGGCGGAGG+AGG + chr4_3:52353075-52353094 Msa0646580:CDS 75.0%
!! GGTGGTGGTGGTGACCGCCG+TGG + chr4_3:52353201-52353220 Msa0646580:CDS 75.0%
! GGTGGTGGTGACCGCCGTGG+TGG + chr4_3:52353204-52353223 Msa0646580:CDS 75.0%
GGTGGTGACCGCCGTGGTGG+AGG + chr4_3:52353207-52353226 Msa0646580:CDS 75.0%
! GGTGACCGCCGTGGTGGAGG+TGG + chr4_3:52353210-52353229 Msa0646580:CDS 75.0%
! GACCGCCGTGGTGGAGGTGG+TGG + chr4_3:52353213-52353232 Msa0646580:CDS 75.0%
!!! GGTGGTGGCGGAGGAGGCCG+TGG + chr4_3:52353081-52353100 Msa0646580:CDS 80.0%
!!! GGTGGCGGAGGAGGCCGTGG+TGG + chr4_3:52353084-52353103 Msa0646580:CDS 80.0%
! GGCGGAGGAGGCCGTGGTGG+CGG + chr4_3:52353087-52353106 Msa0646580:CDS 80.0%
!!! GGAGGAGGCCGTGGTGGCGG+TGG + chr4_3:52353090-52353109 Msa0646580:CDS 80.0%
!!! GGTGGTGGCGGAGGAGGCCG+TGG + chr4_3:52353081-52353100 Msa0646580:CDS 80.0%
!!! GGTGGCGGAGGAGGCCGTGG+TGG + chr4_3:52353084-52353103 Msa0646580:CDS 80.0%
! GGCGGAGGAGGCCGTGGTGG+CGG + chr4_3:52353087-52353106 Msa0646580:CDS 80.0%
!!! GGAGGAGGCCGTGGTGGCGG+TGG + chr4_3:52353090-52353109 Msa0646580:CDS 80.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 52352409 52353614 52352409 ID=Msa0646580;Name=Msa0646580
chr4_3 mRNA 52352409 52353614 52352409 ID=Msa0646580-mRNA-1;Parent=Msa0646580;Name=Msa0646580-mRNA-1;_AED=0.09;_eAED=0.09;_QI=79|1|1|1|1|1|2|303|163
chr4_3 exon 52352409 52352595 52352409 ID=Msa0646580-mRNA-1:exon:12807;Parent=Msa0646580-mRNA-1
chr4_3 exon 52352928 52353614 52352928 ID=Msa0646580-mRNA-1:exon:12808;Parent=Msa0646580-mRNA-1
chr4_3 five_prime_UTR 52352409 52352487 52352409 ID=Msa0646580-mRNA-1:five_prime_utr;Parent=Msa0646580-mRNA-1
chr4_3 CDS 52352488 52352595 52352488 ID=Msa0646580-mRNA-1:cds;Parent=Msa0646580-mRNA-1
chr4_3 CDS 52352928 52353311 52352928 ID=Msa0646580-mRNA-1:cds;Parent=Msa0646580-mRNA-1
chr4_3 three_prime_UTR 52353312 52353614 52353312 ID=Msa0646580-mRNA-1:three_prime_utr;Parent=Msa0646580-mRNA-1
Gene Sequence

>Msa0646580

ATGGCTGATGTTGAATACCGATGCTTCGTCGGAGGTCTTGCATGGGCCACCGACAACGATGCTCTCGAGAAAGCCTTCTCTCAATACGGCGAGATCGTTGATTCCAAGATCATTAACGATCGTGAAACTGGACGATCAAGAGGTTTTGGATTTGTGACATTCGCTAACGAGAAATCCATGAACGATGCCATTGAAGCAATGAACGGTCAGGATTTGGATGGACGTAACATCACTGTGAACCAAGCTCAGAGCCGTGGTAGCGGTGGTGGCGGAGGAGGCCGTGGTGGCGGTGGATATGGAGGTGGTGGTGGTGGATATGGTGGAGAGCGTCGTGGATATGGTGGAAGCGGTGGTGGATATGGTGGAGGAGGTGGTGGATATGGTGGTGGTGGTGACCGCCGTGGTGGAGGTGGTGGATACAGCAGAGGAGGCGGTGGTGGAGGATATGGTGGTGGTGGATACAGCAGAGGAGGAGGTGATGGTGGTTATTAG
Protein sequence

>Msa0646580

MADVEYRCFVGGLAWATDNDALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMNGQDLDGRNITVNQAQSRGSGGGGGGRGGGGYGGGGGGYGGERRGYGGSGGGYGGGGGGYGGGGDRRGGGGGYSRGGGGGGYGGGGYSRGGGDGGY*