AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0556700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556700 MtrunA17_Chr5g0406961 100.000 393 0 0 1 393 52 444 0.0 819
Msa0556700 MtrunA17_Chr4g0045661 98.982 393 4 0 1 393 1 393 0.0 808
Msa0556700 MtrunA17_Chr1g0159321 72.271 339 90 2 59 393 52 390 0.0 526
Msa0556700 MtrunA17_Chr3g0126011 64.489 352 113 4 46 393 23 366 5.15e-169 477
Msa0556700 MtrunA17_Chr3g0125781 65.782 339 113 2 57 393 32 369 1.18e-168 476
Msa0556700 MtrunA17_Chr3g0125991 64.000 350 118 3 46 393 23 366 1.60e-166 470
Msa0556700 MtrunA17_Chr3g0125981 65.970 335 111 2 59 391 35 368 5.01e-165 467
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556700 AT2G43710.1 80.549 401 70 2 1 393 1 401 0.0 675
Msa0556700 AT2G43710.2 80.299 401 71 2 1 393 1 401 0.0 673
Msa0556700 AT3G02630.1 77.041 392 89 1 1 391 3 394 0.0 640
Msa0556700 AT5G16240.1 77.778 360 77 2 33 391 35 392 0.0 597
Msa0556700 AT3G02610.2 68.750 400 110 6 3 393 20 413 0.0 550
Msa0556700 AT3G02610.1 68.750 400 110 6 3 393 18 411 0.0 550
Msa0556700 AT5G16230.1 67.895 380 118 3 18 393 22 401 0.0 537
Msa0556700 AT3G02620.2 71.709 357 95 3 43 393 50 406 0.0 536
Msa0556700 AT3G02620.1 71.709 357 95 3 43 393 47 403 0.0 535
Msa0556700 AT1G43800.1 65.274 383 126 4 14 391 9 389 0.0 517
Msa0556700 AT5G16230.2 74.154 325 80 3 73 393 1 325 3.41e-180 504
Msa0556700 AT3G02620.3 73.394 327 81 3 73 393 1 327 4.07e-179 501

Find 162 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATCAAAATTGCCTTTAA+AGG 0.133216 4_1:-54972433 None:intergenic
ATTTGAAAATTTCAATCTTT+TGG 0.153941 4_1:-54970851 None:intergenic
TGCTGATATACTTGAGTTTC+TGG 0.154020 4_1:+54971947 Msa0556700:CDS
GAAGAAGAAGAAGATGAATT+TGG 0.156254 4_1:-54969426 None:intergenic
GCCCTACTCCTTGGGCTATT+TGG 0.176215 4_1:+54971132 Msa0556700:CDS
TCCTCCAGCCTTCTGATTCT+TGG 0.181095 4_1:-54972050 None:intergenic
GATAAAGAAAATTTAATTAA+TGG 0.183957 4_1:+54972388 Msa0556700:three_prime_UTR
AACACTTCTCTACAGGTTTA+AGG 0.197232 4_1:-54970911 None:intergenic
GGTGGAAGCCATGACGAATT+TGG 0.227957 4_1:-54969545 None:intergenic
GCCGACATAACCGGACTTTC+AGG 0.282345 4_1:+54971987 Msa0556700:CDS
ATAGGCTACATTGGTATATT+AGG 0.295683 4_1:+54972553 Msa0556700:three_prime_UTR
GTGTGTGAAAAGTCCTTTAA+AGG 0.298067 4_1:+54972420 Msa0556700:three_prime_UTR
TTTGTTGCTTGTAGCTTCAT+TGG 0.306270 4_1:+54972529 Msa0556700:three_prime_UTR
CATTCAGTTGGATTCATGAT+AGG 0.310680 4_1:+54972111 Msa0556700:CDS
TACTTGAACATGCACTTCTC+TGG 0.313192 4_1:-54970811 None:intergenic
CCAAACTATGCTTAATACTT+TGG 0.323055 4_1:+54971082 Msa0556700:CDS
GTACTACTCTAAGCATATTA+AGG 0.323956 4_1:+54972137 Msa0556700:exon
AGGTTTAAGGTGAGTCAATA+AGG 0.334045 4_1:-54970898 None:intergenic
AAGAAGAAGAAGATGAATTT+GGG 0.337900 4_1:-54969425 None:intergenic
AGATGATTACTTTGTTGTTC+TGG 0.344575 4_1:+54971022 Msa0556700:CDS
TTAAGCATAGTTTGGTAAGT+AGG 0.345744 4_1:-54971074 None:intergenic
TTTCAAATCGTTGGAGGGTT+GGG 0.350638 4_1:+54970866 Msa0556700:CDS
CCAAAGTATTAAGCATAGTT+TGG 0.352890 4_1:-54971082 None:intergenic
AATCCAACTGAATGCAAGTT+TGG 0.355409 4_1:-54972102 None:intergenic
GTGGAAGCCATGACGAATTT+GGG 0.375597 4_1:-54969544 None:intergenic
TGTTGTTCTGGTTGGAGATA+TGG 0.377751 4_1:+54971034 Msa0556700:CDS
GCTTGTAGCTTCATTGGAAT+AGG 0.383035 4_1:+54972535 Msa0556700:three_prime_UTR
AATCTTCCAGCAACTCTACT+TGG 0.387112 4_1:+54972169 Msa0556700:three_prime_UTR
TCTGTTAAGCATAAGCAATC+AGG 0.396112 4_1:+54972261 Msa0556700:three_prime_UTR
AAAGATAGTGGAAAAGCTAT+TGG 0.403395 4_1:+54971767 Msa0556700:CDS
ATTGCTCCAAGTAGAGTTGC+TGG 0.409276 4_1:-54972175 None:intergenic
TTCCTTCTCTCTCCCTCAAA+TGG 0.413842 4_1:+54969507 Msa0556700:CDS
CTGCCCGATCCTTCCTCAGA+TGG 0.416238 4_1:+54970951 Msa0556700:CDS
ATGGCTTCCACCCTCCGTTC+TGG 0.424747 4_1:+54969556 Msa0556700:CDS
CATCCAAACTTGCATTCAGT+TGG 0.428488 4_1:+54972099 Msa0556700:CDS
AGAACAACAAAGTAATCATC+TGG 0.438790 4_1:-54971020 None:intergenic
GATATACTTGAGTTTCTGGT+TGG 0.441237 4_1:+54971951 Msa0556700:CDS
TGGAAGGTGGCCGACATAAC+CGG 0.441892 4_1:+54971978 Msa0556700:CDS
GAGAAGGAAGATGTTTGTGT+AGG 0.448639 4_1:-54969493 None:intergenic
GGTTGCCAACACTTCTCTAC+AGG 0.448685 4_1:-54970918 None:intergenic
CAGGTGCCAGCCCTACTCCT+TGG 0.452555 4_1:+54971123 Msa0556700:CDS
TTACCATTCCAGAGCCAATC+AGG 0.453929 4_1:-54971262 None:intergenic
TCACACCAACTCAAGTATTC+CGG 0.455637 4_1:-54972494 None:intergenic
TGTGTTTCCATGCGATATAA+AGG 0.456327 4_1:-54971652 None:intergenic
AAGATGTTTGTGTAGGGAAA+GGG 0.456469 4_1:-54969486 None:intergenic
CAGCAGAATAGTTATCAAAC+AGG 0.457192 4_1:-54971887 None:intergenic
ATATACTTGAGTTTCTGGTT+GGG 0.460993 4_1:+54971952 Msa0556700:CDS
GCCGCGTTCCTTAGCAAGCC+TGG 0.462444 4_1:-54971676 None:intergenic
AGGTGCCAGCCCTACTCCTT+GGG 0.463988 4_1:+54971124 Msa0556700:CDS
TCCAGCCTTCTGATTCTTGG+TGG 0.465016 4_1:-54972047 None:intergenic
TCGTCCCTCACCTGAAAGTC+CGG 0.465890 4_1:-54971997 None:intergenic
AGAAGGAAGATGTTTGTGTA+GGG 0.472489 4_1:-54969492 None:intergenic
TCTGCTGTTGCCCAGCGCAT+TGG 0.472536 4_1:+54971903 Msa0556700:CDS
GGAACGCGGCGATTTGAAGT+TGG 0.473114 4_1:+54971689 Msa0556700:CDS
AACAAGTATCTCTACTTGTC+CGG 0.474429 4_1:+54971200 Msa0556700:CDS
TCCAAATAGCCCAAGGAGTA+GGG 0.477229 4_1:-54971133 None:intergenic
CAGTGTAGACTCCAATGCGC+TGG 0.478141 4_1:-54971914 None:intergenic
CTGAGAGCCATTGTTGGATA+CGG 0.479530 4_1:-54969457 None:intergenic
GTGTAGATAAAGCCAAGGTA+AGG 0.480370 4_1:-54971609 None:intergenic
GTTTCTGGTTGGGAGGTGGA+AGG 0.480811 4_1:+54971962 Msa0556700:CDS
TACTTGAGTTTCTGGTTGGG+AGG 0.483685 4_1:+54971955 Msa0556700:CDS
TATCGCATGGAAACACAGCC+AGG 0.484282 4_1:+54971658 Msa0556700:CDS
GATGGAGTTCGTGATGAAAC+AGG 0.485012 4_1:+54971104 Msa0556700:CDS
GATCTGAGACTGGCCATTTG+AGG 0.486343 4_1:-54969520 None:intergenic
GAAGATGAATTTGGGAATCA+CGG 0.488705 4_1:-54969417 None:intergenic
AGAGGTTGAAAATATTAAGA+AGG 0.489403 4_1:+54970776 Msa0556700:CDS
AAGGCACAGGAGTATGTTTG+TGG 0.492271 4_1:+54972020 Msa0556700:CDS
ATTCAGTACCTGATTGGCTC+TGG 0.492964 4_1:+54971254 Msa0556700:CDS
TTGTGAGGCAGAGGCAAGAA+TGG 0.498270 4_1:-54969320 None:intergenic
CTCCTTGGGCTATTTGGACA+AGG 0.500836 4_1:+54971138 Msa0556700:CDS
AGATGTTTGTGTAGGGAAAG+GGG 0.501537 4_1:-54969485 None:intergenic
TTATTCTTCATTGCGGTCAC+CGG 0.501935 4_1:+54972475 Msa0556700:three_prime_UTR
CGTCTCGGCCATCATACATC+AGG 0.503492 4_1:-54971860 None:intergenic
AAAGCAATAACTGTTCCATC+AGG 0.503808 4_1:-54971798 None:intergenic
TTGAGTTTCTGGTTGGGAGG+TGG 0.503890 4_1:+54971958 Msa0556700:CDS
AAGACAATTCAGTACCTGAT+TGG 0.503895 4_1:+54971248 Msa0556700:CDS
TATCAAACAGGTTGTCGTCT+CGG 0.505744 4_1:-54971875 None:intergenic
GACTGCTTACACAAAGATAG+TGG 0.506240 4_1:+54971755 Msa0556700:CDS
ATCTGAGACTGGCCATTTGA+GGG 0.507077 4_1:-54969519 None:intergenic
CCATCATACATCAGGTGTGC+TGG 0.507354 4_1:-54971852 None:intergenic
ATTCAGTTGGATTCATGATA+GGG 0.509293 4_1:+54972112 Msa0556700:CDS
ATCGTTGGAGGGTTGGGCTG+AGG 0.511095 4_1:+54970872 Msa0556700:CDS
ACTATGCTTAATACTTTGGA+TGG 0.522020 4_1:+54971086 Msa0556700:CDS
CTGTTAAGCATAAGCAATCA+GGG 0.523483 4_1:+54972262 Msa0556700:three_prime_UTR
CAGAGGCAAGAATGGACAAT+GGG 0.524400 4_1:-54969312 None:intergenic
GGGCTATTTGGACAAGGGCA+TGG 0.524428 4_1:+54971144 Msa0556700:CDS
CTACACTTCATTTCAAGAGA+GGG 0.526696 4_1:+54971626 Msa0556700:CDS
TTCATTGGAATAGGCTACAT+TGG 0.527622 4_1:+54972544 Msa0556700:three_prime_UTR
AATCCATCTGAGGAAGGATC+GGG 0.533112 4_1:-54970954 None:intergenic
GTTGCTCTGAGAGCCATTGT+TGG 0.534770 4_1:-54969463 None:intergenic
ATATCACTACTACAAGGAAA+AGG 0.537233 4_1:-54972324 None:intergenic
GAAGATGTTTGTGTAGGGAA+AGG 0.538201 4_1:-54969487 None:intergenic
ACTTGAACATGCACTTCTCT+GGG 0.540588 4_1:-54970810 None:intergenic
GCCACCAAGAATCAGAAGGC+TGG 0.541195 4_1:+54972046 Msa0556700:CDS
ACACAAGCACAAGTATTAAG+TGG 0.542153 4_1:+54969280 None:intergenic
GATTACTTTGTTGTTCTGGT+TGG 0.542691 4_1:+54971026 Msa0556700:CDS
AATAGCCCAAGGAGTAGGGC+TGG 0.546034 4_1:-54971129 None:intergenic
AGGTGAGGGACGAAAGGCAC+AGG 0.547789 4_1:+54972007 Msa0556700:CDS
GAATCCATCTGAGGAAGGAT+CGG 0.550340 4_1:-54970955 None:intergenic
ACCTGAAAGTCCGGTTATGT+CGG 0.554587 4_1:-54971988 None:intergenic
GTCCAAATAGCCCAAGGAGT+AGG 0.558680 4_1:-54971134 None:intergenic
TCTGGTTGGGAGGTGGAAGG+TGG 0.560034 4_1:+54971965 Msa0556700:CDS
AGGGCGACCTTTATATCGCA+TGG 0.560815 4_1:+54971645 Msa0556700:CDS
AGAGAAGTGTTGGCAACCAC+AGG 0.562702 4_1:+54970923 Msa0556700:CDS
TTGAAGTTGGCTCAGATCTG+TGG 0.563389 4_1:+54971702 Msa0556700:CDS
GTACCTGATTGGCTCTGGAA+TGG 0.564475 4_1:+54971259 Msa0556700:CDS
AGTGTAGACTCCAATGCGCT+GGG 0.573443 4_1:-54971913 None:intergenic
AAGTGAAGGAACTGAGAGAG+AGG 0.573671 4_1:+54970985 Msa0556700:CDS
AGGCACAGGAGTATGTTTGT+GGG 0.574102 4_1:+54972021 Msa0556700:CDS
AAGTATATCAGCATAGTCCT+TGG 0.575108 4_1:-54971937 None:intergenic
GGCAAGAATGGACAATGGGA+AGG 0.575597 4_1:-54969308 None:intergenic
TTAAACCTGTAGAGAAGTGT+TGG 0.579690 4_1:+54970913 Msa0556700:CDS
TCTACACTTCATTTCAAGAG+AGG 0.581234 4_1:+54971625 Msa0556700:CDS
GGCTACATTGGTATATTAGG+AGG 0.582606 4_1:+54972556 Msa0556700:three_prime_UTR
TTGTCTCATATCAACACGGC+CGG 0.584046 4_1:-54971219 None:intergenic
CTCATGGCGTTTCTCATCAG+AGG 0.584747 4_1:-54971733 None:intergenic
TTGTCATTTATTCTTCATTG+CGG 0.586963 4_1:+54972468 Msa0556700:three_prime_UTR
GGCCATTTGAGGGAGAGAGA+AGG 0.589016 4_1:-54969509 None:intergenic
GAATGGACAATGGGAAGGGA+CGG 0.593111 4_1:-54969303 None:intergenic
GAATTTGGGAGATCTGAGAC+TGG 0.593320 4_1:-54969530 None:intergenic
GAGAGCTTCAGCAAGAGCAA+AGG 0.595934 4_1:+54972073 Msa0556700:CDS
AAACACAGCCAGGCTTGCTA+AGG 0.597013 4_1:+54971668 Msa0556700:CDS
TGTAGATAAAGCCAAGGTAA+GGG 0.598444 4_1:-54971608 None:intergenic
CAGATCTCCCAAATTCGTCA+TGG 0.599540 4_1:+54969537 Msa0556700:CDS
AAATTGATGGATAGGATCCT+CGG 0.601174 4_1:+54971574 Msa0556700:intron
ACTTTCAGGTGAGGGACGAA+AGG 0.610348 4_1:+54972001 Msa0556700:CDS
CCAGCACACCTGATGTATGA+TGG 0.611997 4_1:+54971852 Msa0556700:CDS
CTATTGGAGATTGATCCTGA+TGG 0.612852 4_1:+54971783 Msa0556700:CDS
GCCCTTGTCCAAATAGCCCA+AGG 0.616169 4_1:-54971140 None:intergenic
TCCTTGGGCTATTTGGACAA+GGG 0.616511 4_1:+54971139 Msa0556700:CDS
ATCGAATCCGTATCCAACAA+TGG 0.617146 4_1:+54969450 Msa0556700:exon
TCTTCGAATCCATCTGAGGA+AGG 0.617698 4_1:-54970960 None:intergenic
AATACTTGAGTTGGTGTGAG+TGG 0.621234 4_1:+54972498 Msa0556700:three_prime_UTR
GCCAGGCTTGCTAAGGAACG+CGG 0.621905 4_1:+54971675 Msa0556700:CDS
AGTGAAGGAACTGAGAGAGA+GGG 0.623958 4_1:+54970986 Msa0556700:CDS
TGACTTGGAACCAGAACGGA+GGG 0.624622 4_1:-54969566 None:intergenic
GCAAGAATGGACAATGGGAA+GGG 0.626362 4_1:-54969307 None:intergenic
ACTGAGAATAGCCCTTACCT+TGG 0.627826 4_1:+54971597 Msa0556700:CDS
GGTCACCGGAATACTTGAGT+TGG 0.629941 4_1:+54972489 Msa0556700:three_prime_UTR
ATGAAGTGTAGATAAAGCCA+AGG 0.630791 4_1:-54971614 None:intergenic
TTGCTCTTCGAATCCATCTG+AGG 0.631251 4_1:-54970964 None:intergenic
CAATTTGTCTCATATCAACA+CGG 0.633578 4_1:-54971223 None:intergenic
GCAGAGGCAAGAATGGACAA+TGG 0.634949 4_1:-54969313 None:intergenic
TCTTTGTGTAAGCAGTCTCA+TGG 0.635579 4_1:-54971749 None:intergenic
CTTGGAACCAGAACGGAGGG+TGG 0.638218 4_1:-54969563 None:intergenic
TGGATTCGAAGAGCAAGTGA+AGG 0.638840 4_1:+54970971 Msa0556700:CDS
CATTGGAGTCTACACTGCCA+AGG 0.641019 4_1:+54971920 Msa0556700:CDS
ATGACTGTATTGTGAGGCAG+AGG 0.642991 4_1:-54969329 None:intergenic
GGTTGCCACCAAGAATCAGA+AGG 0.645168 4_1:+54972042 Msa0556700:CDS
TAAAACATATCACTACTACA+AGG 0.651295 4_1:-54972330 None:intergenic
TCACTGACTTGGAACCAGAA+CGG 0.659911 4_1:-54969570 None:intergenic
GAAACAATCGTTCTGTTGCG+TGG 0.663763 4_1:+54972238 Msa0556700:three_prime_UTR
ATAACCGGACTTTCAGGTGA+GGG 0.664241 4_1:+54971993 Msa0556700:CDS
ACCAAGAATCAGAAGGCTGG+AGG 0.675099 4_1:+54972049 Msa0556700:CDS
TAAGGGCTATTCTCAGTCCG+AGG 0.684437 4_1:-54971591 None:intergenic
CATAACCGGACTTTCAGGTG+AGG 0.689606 4_1:+54971992 Msa0556700:CDS
TGAACATGCACTTCTCTGGG+AGG 0.699562 4_1:-54970807 None:intergenic
CTGACTTGGAACCAGAACGG+AGG 0.705087 4_1:-54969567 None:intergenic
TGTTAAGCATAAGCAATCAG+GGG 0.708374 4_1:+54972263 Msa0556700:three_prime_UTR
ACAGCTGAAGAAAATAGACA+TGG 0.709949 4_1:+54971167 Msa0556700:CDS
GGATCGGGCAGAAAATCCTG+TGG 0.717346 4_1:-54970939 None:intergenic
ATGTGTATGACTGTATTGTG+AGG 0.739231 4_1:-54969335 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTATAATCAATTATATTTT+TGG + chr4_1:54970169-54970188 Msa0556700:intron 10.0%
!! AAATTATCATAAAAAAGAAT+CGG - chr4_1:54970452-54970471 None:intergenic 10.0%
!! GATAAAGAAAATTTAATTAA+TGG + chr4_1:54972388-54972407 Msa0556700:three_prime_UTR 10.0%
!!! TATTGAATTAATTTTTCGTT+TGG + chr4_1:54969708-54969727 Msa0556700:intron 15.0%
!! AAAAAACAAAACTAAAACTA+AGG - chr4_1:54970045-54970064 None:intergenic 15.0%
!!! CTTTTTTATGATAATTTTGT+TGG + chr4_1:54970455-54970474 Msa0556700:intron 15.0%
!!! TTTGAAAATTTCAATCTTTT+GGG - chr4_1:54970853-54970872 None:intergenic 15.0%
!!! ATTTGAAAATTTCAATCTTT+TGG - chr4_1:54970854-54970873 None:intergenic 15.0%
!! TGAAAAATAATGAGATAGAA+CGG - chr4_1:54969877-54969896 None:intergenic 20.0%
!! TTAAGAATATTAGAAGATAC+TGG - chr4_1:54970011-54970030 None:intergenic 20.0%
!!! GTTTTTTTGATTGTATTCTA+TGG + chr4_1:54970058-54970077 Msa0556700:intron 20.0%
!!! ATTATATTTTTGGAACTTGT+TGG + chr4_1:54970179-54970198 Msa0556700:intron 20.0%
!!! TTATATTTTTGGAACTTGTT+GGG + chr4_1:54970180-54970199 Msa0556700:intron 20.0%
!! ATATCATCAAAATGACAATT+TGG - chr4_1:54970568-54970587 None:intergenic 20.0%
!! TGAATTGTTAATATTATTCG+TGG - chr4_1:54970618-54970637 None:intergenic 20.0%
!! ATATCATTCATTTCTTTAAC+AGG - chr4_1:54970662-54970681 None:intergenic 20.0%
!!! TTGAAAATTTCAATCTTTTG+GGG - chr4_1:54970852-54970871 None:intergenic 20.0%
!!! AATACTGAATTTGCTTAAAA+TGG + chr4_1:54971359-54971378 Msa0556700:intron 20.0%
!!! TGTTTATATCTCTCTAATTT+TGG + chr4_1:54971543-54971562 Msa0556700:intron 20.0%
! AAGAAGAAGAAGATGAATTT+GGG - chr4_1:54969428-54969447 None:intergenic 25.0%
! CTTCGCTATAAATTCAATTT+GGG + chr4_1:54970105-54970124 Msa0556700:intron 25.0%
! TGATGAATGTTTACAGAAAT+TGG + chr4_1:54970271-54970290 Msa0556700:intron 25.0%
!!! ATCAAATTTTAACAAGCCAT+TGG - chr4_1:54970324-54970343 None:intergenic 25.0%
! TAAAAAAGAATCGGTAAACA+TGG - chr4_1:54970443-54970462 None:intergenic 25.0%
! TTGATTAACCTATGCATTTA+AGG + chr4_1:54970518-54970537 Msa0556700:intron 25.0%
!!! TCATTTTGATGATATCTACA+CGG + chr4_1:54970573-54970592 Msa0556700:intron 25.0%
! TGAATGATATTGATACAATC+TGG + chr4_1:54970672-54970691 Msa0556700:intron 25.0%
! TTTATATTTACTTTGCAGAG+AGG + chr4_1:54970758-54970777 Msa0556700:intron 25.0%
! AGAGGTTGAAAATATTAAGA+AGG + chr4_1:54970776-54970795 Msa0556700:CDS 25.0%
!! GATTGAAATTTTCAAATCGT+TGG + chr4_1:54970857-54970876 Msa0556700:CDS 25.0%
! TGAGTCAAAAATGAATTCAA+GGG - chr4_1:54971486-54971505 None:intergenic 25.0%
! TTGAGTCAAAAATGAATTCA+AGG - chr4_1:54971487-54971506 None:intergenic 25.0%
!!! TTCAGTTTGTCATTTTTGTT+TGG + chr4_1:54972214-54972233 Msa0556700:three_prime_UTR 25.0%
! TAAAACATATCACTACTACA+AGG - chr4_1:54972333-54972352 None:intergenic 25.0%
!! TTGTCATTTATTCTTCATTG+CGG + chr4_1:54972468-54972487 Msa0556700:three_prime_UTR 25.0%
GAAGAAGAAGAAGATGAATT+TGG - chr4_1:54969429-54969448 None:intergenic 30.0%
!! TGCATGTATAGTCTTATAGT+TGG + chr4_1:54969787-54969806 Msa0556700:intron 30.0%
AGAATATTAGAAGATACTGG+AGG - chr4_1:54970008-54970027 None:intergenic 30.0%
GCTTCGCTATAAATTCAATT+TGG + chr4_1:54970104-54970123 Msa0556700:intron 30.0%
ATCAAATCAAATCAAGCAGA+TGG - chr4_1:54970215-54970234 None:intergenic 30.0%
!! AATTTTAACAAGCCATTGGA+CGG - chr4_1:54970320-54970339 None:intergenic 30.0%
! AAAATCACCGAACTTCATTT+TGG + chr4_1:54970366-54970385 Msa0556700:intron 30.0%
ATTAACCTATGCATTTAAGG+TGG + chr4_1:54970521-54970540 Msa0556700:intron 30.0%
!! CATTTTGATGATATCTACAC+GGG + chr4_1:54970574-54970593 Msa0556700:intron 30.0%
CAAAAGCAAGATCATTTGAA+TGG + chr4_1:54970709-54970728 Msa0556700:intron 30.0%
!! AAAATTTCAATCTTTTGGGG+AGG - chr4_1:54970849-54970868 None:intergenic 30.0%
! TGAAATTTTCAAATCGTTGG+AGG + chr4_1:54970860-54970879 Msa0556700:CDS 30.0%
! GAAATTTTCAAATCGTTGGA+GGG + chr4_1:54970861-54970880 Msa0556700:CDS 30.0%
AGAACAACAAAGTAATCATC+TGG - chr4_1:54971023-54971042 None:intergenic 30.0%
!! AGATGATTACTTTGTTGTTC+TGG + chr4_1:54971022-54971041 Msa0556700:CDS 30.0%
TTAAGCATAGTTTGGTAAGT+AGG - chr4_1:54971077-54971096 None:intergenic 30.0%
! CCAAAGTATTAAGCATAGTT+TGG - chr4_1:54971085-54971104 None:intergenic 30.0%
CCAAACTATGCTTAATACTT+TGG + chr4_1:54971082-54971101 Msa0556700:CDS 30.0%
ACTATGCTTAATACTTTGGA+TGG + chr4_1:54971086-54971105 Msa0556700:CDS 30.0%
CAATTTGTCTCATATCAACA+CGG - chr4_1:54971226-54971245 None:intergenic 30.0%
AAGATCATCAATAGAAGTCT+AGG - chr4_1:54971291-54971310 None:intergenic 30.0%
! TCTCTCTAATTTTGGATTGA+TGG + chr4_1:54971551-54971570 Msa0556700:intron 30.0%
TTTGGATTGATGGAAATTGA+TGG + chr4_1:54971561-54971580 Msa0556700:intron 30.0%
! ATTGATGGAAATTGATGGAT+AGG + chr4_1:54971566-54971585 Msa0556700:intron 30.0%
!! AAAGATAGTGGAAAAGCTAT+TGG + chr4_1:54971767-54971786 Msa0556700:CDS 30.0%
!! ATATACTTGAGTTTCTGGTT+GGG + chr4_1:54971952-54971971 Msa0556700:CDS 30.0%
ATTCAGTTGGATTCATGATA+GGG + chr4_1:54972112-54972131 Msa0556700:CDS 30.0%
GTACTACTCTAAGCATATTA+AGG + chr4_1:54972137-54972156 Msa0556700:exon 30.0%
ATATCACTACTACAAGGAAA+AGG - chr4_1:54972327-54972346 None:intergenic 30.0%
!! TCCTTTAAAGGCAATTTTGA+TGG + chr4_1:54972432-54972451 Msa0556700:three_prime_UTR 30.0%
ATAGGCTACATTGGTATATT+AGG + chr4_1:54972553-54972572 Msa0556700:three_prime_UTR 30.0%
ATGTGTATGACTGTATTGTG+AGG - chr4_1:54969338-54969357 None:intergenic 35.0%
GAAGATGAATTTGGGAATCA+CGG - chr4_1:54969420-54969439 None:intergenic 35.0%
AAGATGTTTGTGTAGGGAAA+GGG - chr4_1:54969489-54969508 None:intergenic 35.0%
AGAAGGAAGATGTTTGTGTA+GGG - chr4_1:54969495-54969514 None:intergenic 35.0%
ATGCGCGATGAATTGAAAAA+GGG - chr4_1:54969597-54969616 None:intergenic 35.0%
AATGCGCGATGAATTGAAAA+AGG - chr4_1:54969598-54969617 None:intergenic 35.0%
! TCGTTTGGTGAAATGATTGT+TGG + chr4_1:54969723-54969742 Msa0556700:intron 35.0%
! CGTTTGGTGAAATGATTGTT+GGG + chr4_1:54969724-54969743 Msa0556700:intron 35.0%
! GTTTGGTGAAATGATTGTTG+GGG + chr4_1:54969725-54969744 Msa0556700:intron 35.0%
TTTGGTGAAATGATTGTTGG+GGG + chr4_1:54969726-54969745 Msa0556700:intron 35.0%
!! GTATAGTCTTATAGTTGGTG+AGG + chr4_1:54969792-54969811 Msa0556700:intron 35.0%
!! TATAGTTGGTGAGGATATTC+AGG + chr4_1:54969801-54969820 Msa0556700:intron 35.0%
AGAACGGTGTGAATATAAGT+TGG - chr4_1:54969861-54969880 None:intergenic 35.0%
GATACTGGAGGAAAAACATA+GGG - chr4_1:54969996-54970015 None:intergenic 35.0%
AGATACTGGAGGAAAAACAT+AGG - chr4_1:54969997-54970016 None:intergenic 35.0%
CACACAGATTTATGTTGAAC+AGG - chr4_1:54970149-54970168 None:intergenic 35.0%
! AGGTTTAAGGTGAGTCAATA+AGG - chr4_1:54970901-54970920 None:intergenic 35.0%
AACACTTCTCTACAGGTTTA+AGG - chr4_1:54970914-54970933 None:intergenic 35.0%
! TTAAACCTGTAGAGAAGTGT+TGG + chr4_1:54970913-54970932 Msa0556700:CDS 35.0%
!! GATTACTTTGTTGTTCTGGT+TGG + chr4_1:54971026-54971045 Msa0556700:CDS 35.0%
ACAGCTGAAGAAAATAGACA+TGG + chr4_1:54971167-54971186 Msa0556700:CDS 35.0%
AACAAGTATCTCTACTTGTC+CGG + chr4_1:54971200-54971219 Msa0556700:CDS 35.0%
AAGACAATTCAGTACCTGAT+TGG + chr4_1:54971248-54971267 Msa0556700:CDS 35.0%
! AAATTGATGGATAGGATCCT+CGG + chr4_1:54971574-54971593 Msa0556700:intron 35.0%
TGTAGATAAAGCCAAGGTAA+GGG - chr4_1:54971611-54971630 None:intergenic 35.0%
ATGAAGTGTAGATAAAGCCA+AGG - chr4_1:54971617-54971636 None:intergenic 35.0%
TCTACACTTCATTTCAAGAG+AGG + chr4_1:54971625-54971644 Msa0556700:CDS 35.0%
CTACACTTCATTTCAAGAGA+GGG + chr4_1:54971626-54971645 Msa0556700:CDS 35.0%
TGTGTTTCCATGCGATATAA+AGG - chr4_1:54971655-54971674 None:intergenic 35.0%
AAAGCAATAACTGTTCCATC+AGG - chr4_1:54971801-54971820 None:intergenic 35.0%
CAGCAGAATAGTTATCAAAC+AGG - chr4_1:54971890-54971909 None:intergenic 35.0%
AAGTATATCAGCATAGTCCT+TGG - chr4_1:54971940-54971959 None:intergenic 35.0%
TGCTGATATACTTGAGTTTC+TGG + chr4_1:54971947-54971966 Msa0556700:CDS 35.0%
!! GATATACTTGAGTTTCTGGT+TGG + chr4_1:54971951-54971970 Msa0556700:CDS 35.0%
AATCCAACTGAATGCAAGTT+TGG - chr4_1:54972105-54972124 None:intergenic 35.0%
CATTCAGTTGGATTCATGAT+AGG + chr4_1:54972111-54972130 Msa0556700:CDS 35.0%
TCTGTTAAGCATAAGCAATC+AGG + chr4_1:54972261-54972280 Msa0556700:three_prime_UTR 35.0%
CTGTTAAGCATAAGCAATCA+GGG + chr4_1:54972262-54972281 Msa0556700:three_prime_UTR 35.0%
TGTTAAGCATAAGCAATCAG+GGG + chr4_1:54972263-54972282 Msa0556700:three_prime_UTR 35.0%
GTGTGTGAAAAGTCCTTTAA+AGG + chr4_1:54972420-54972439 Msa0556700:three_prime_UTR 35.0%
GCCATCAAAATTGCCTTTAA+AGG - chr4_1:54972436-54972455 None:intergenic 35.0%
! TTTGTTGCTTGTAGCTTCAT+TGG + chr4_1:54972529-54972548 Msa0556700:three_prime_UTR 35.0%
TTCATTGGAATAGGCTACAT+TGG + chr4_1:54972544-54972563 Msa0556700:three_prime_UTR 35.0%
ATCGAATCCGTATCCAACAA+TGG + chr4_1:54969450-54969469 Msa0556700:exon 40.0%
AGATGTTTGTGTAGGGAAAG+GGG - chr4_1:54969488-54969507 None:intergenic 40.0%
GAAGATGTTTGTGTAGGGAA+AGG - chr4_1:54969490-54969509 None:intergenic 40.0%
GAGAAGGAAGATGTTTGTGT+AGG - chr4_1:54969496-54969515 None:intergenic 40.0%
! TGAAAAAGGGATCACTGACT+TGG - chr4_1:54969584-54969603 None:intergenic 40.0%
GGATATTCAGGATGCTTGTT+TGG + chr4_1:54969813-54969832 Msa0556700:intron 40.0%
GGTATAAACGCATATTCCCT+AGG + chr4_1:54970079-54970098 Msa0556700:intron 40.0%
ATAAACGCATATTCCCTAGG+TGG + chr4_1:54970082-54970101 Msa0556700:intron 40.0%
ATTTATAGCGAAGCCACCTA+GGG - chr4_1:54970098-54970117 None:intergenic 40.0%
AATTTATAGCGAAGCCACCT+AGG - chr4_1:54970099-54970118 None:intergenic 40.0%
TGACGGTCCAAAATGAAGTT+CGG - chr4_1:54970376-54970395 None:intergenic 40.0%
CTGCAGTCACACAAAATTGA+CGG - chr4_1:54970393-54970412 None:intergenic 40.0%
TGGAGCTGAATACAGAGTAT+TGG + chr4_1:54970475-54970494 Msa0556700:intron 40.0%
! AACCTATGCATTTAAGGTGG+TGG + chr4_1:54970524-54970543 Msa0556700:intron 40.0%
TACCACCACCTTAAATGCAT+AGG - chr4_1:54970529-54970548 None:intergenic 40.0%
ACTTGAACATGCACTTCTCT+GGG - chr4_1:54970813-54970832 None:intergenic 40.0%
TACTTGAACATGCACTTCTC+TGG - chr4_1:54970814-54970833 None:intergenic 40.0%
! TTTTCAAATCGTTGGAGGGT+TGG + chr4_1:54970865-54970884 Msa0556700:CDS 40.0%
TTTCAAATCGTTGGAGGGTT+GGG + chr4_1:54970866-54970885 Msa0556700:CDS 40.0%
! TGTTGTTCTGGTTGGAGATA+TGG + chr4_1:54971034-54971053 Msa0556700:CDS 40.0%
GTGTAGATAAAGCCAAGGTA+AGG - chr4_1:54971612-54971631 None:intergenic 40.0%
TCTTTGTGTAAGCAGTCTCA+TGG - chr4_1:54971752-54971771 None:intergenic 40.0%
GACTGCTTACACAAAGATAG+TGG + chr4_1:54971755-54971774 Msa0556700:CDS 40.0%
CTATTGGAGATTGATCCTGA+TGG + chr4_1:54971783-54971802 Msa0556700:CDS 40.0%
!! TTGCTTTTGCTGACATGATG+AGG + chr4_1:54971814-54971833 Msa0556700:CDS 40.0%
TATCAAACAGGTTGTCGTCT+CGG - chr4_1:54971878-54971897 None:intergenic 40.0%
CATCCAAACTTGCATTCAGT+TGG + chr4_1:54972099-54972118 Msa0556700:CDS 40.0%
AATCTTCCAGCAACTCTACT+TGG + chr4_1:54972169-54972188 Msa0556700:three_prime_UTR 40.0%
!!! AAAGGCAATTTTGATGGCGA+TGG + chr4_1:54972438-54972457 Msa0556700:three_prime_UTR 40.0%
!!! AAGGCAATTTTGATGGCGAT+GGG + chr4_1:54972439-54972458 Msa0556700:three_prime_UTR 40.0%
TTATTCTTCATTGCGGTCAC+CGG + chr4_1:54972475-54972494 Msa0556700:three_prime_UTR 40.0%
TCACACCAACTCAAGTATTC+CGG - chr4_1:54972497-54972516 None:intergenic 40.0%
!! AATACTTGAGTTGGTGTGAG+TGG + chr4_1:54972498-54972517 Msa0556700:three_prime_UTR 40.0%
GCTTGTAGCTTCATTGGAAT+AGG + chr4_1:54972535-54972554 Msa0556700:three_prime_UTR 40.0%
GGCTACATTGGTATATTAGG+AGG + chr4_1:54972556-54972575 Msa0556700:three_prime_UTR 40.0%
GCAAGAATGGACAATGGGAA+GGG - chr4_1:54969310-54969329 None:intergenic 45.0%
CAGAGGCAAGAATGGACAAT+GGG - chr4_1:54969315-54969334 None:intergenic 45.0%
ATGACTGTATTGTGAGGCAG+AGG - chr4_1:54969332-54969351 None:intergenic 45.0%
CTGAGAGCCATTGTTGGATA+CGG - chr4_1:54969460-54969479 None:intergenic 45.0%
TTCCTTCTCTCTCCCTCAAA+TGG + chr4_1:54969507-54969526 Msa0556700:CDS 45.0%
! ATCTGAGACTGGCCATTTGA+GGG - chr4_1:54969522-54969541 None:intergenic 45.0%
! GAATTTGGGAGATCTGAGAC+TGG - chr4_1:54969533-54969552 None:intergenic 45.0%
CAGATCTCCCAAATTCGTCA+TGG + chr4_1:54969537-54969556 Msa0556700:CDS 45.0%
GTGGAAGCCATGACGAATTT+GGG - chr4_1:54969547-54969566 None:intergenic 45.0%
!! TCACTGACTTGGAACCAGAA+CGG - chr4_1:54969573-54969592 None:intergenic 45.0%
TGGTCATACAGTTGCGATGT+TGG + chr4_1:54970291-54970310 Msa0556700:intron 45.0%
TCATACAGTTGCGATGTTGG+TGG + chr4_1:54970294-54970313 Msa0556700:intron 45.0%
! CGTCAATTTTGTGTGACTGC+AGG + chr4_1:54970391-54970410 Msa0556700:intron 45.0%
TTTGCTCACTGCAGCAAATC+CGG + chr4_1:54970415-54970434 Msa0556700:intron 45.0%
AGAATCGGTAAACATGGACC+CGG - chr4_1:54970437-54970456 None:intergenic 45.0%
AATCCATCTGAGGAAGGATC+GGG - chr4_1:54970957-54970976 None:intergenic 45.0%
GAATCCATCTGAGGAAGGAT+CGG - chr4_1:54970958-54970977 None:intergenic 45.0%
TCTTCGAATCCATCTGAGGA+AGG - chr4_1:54970963-54970982 None:intergenic 45.0%
TTGCTCTTCGAATCCATCTG+AGG - chr4_1:54970967-54970986 None:intergenic 45.0%
TGGATTCGAAGAGCAAGTGA+AGG + chr4_1:54970971-54970990 Msa0556700:CDS 45.0%
AAGTGAAGGAACTGAGAGAG+AGG + chr4_1:54970985-54971004 Msa0556700:CDS 45.0%
AGTGAAGGAACTGAGAGAGA+GGG + chr4_1:54970986-54971005 Msa0556700:CDS 45.0%
GATGGAGTTCGTGATGAAAC+AGG + chr4_1:54971104-54971123 Msa0556700:CDS 45.0%
TCCAAATAGCCCAAGGAGTA+GGG - chr4_1:54971136-54971155 None:intergenic 45.0%
TCCTTGGGCTATTTGGACAA+GGG + chr4_1:54971139-54971158 Msa0556700:CDS 45.0%
TTGTCTCATATCAACACGGC+CGG - chr4_1:54971222-54971241 None:intergenic 45.0%
! ATTCAGTACCTGATTGGCTC+TGG + chr4_1:54971254-54971273 Msa0556700:CDS 45.0%
TTACCATTCCAGAGCCAATC+AGG - chr4_1:54971265-54971284 None:intergenic 45.0%
CAGTGACACATTGATGCATC+TGG - chr4_1:54971413-54971432 None:intergenic 45.0%
ACTGAGAATAGCCCTTACCT+TGG + chr4_1:54971597-54971616 Msa0556700:CDS 45.0%
! TTGAAGTTGGCTCAGATCTG+TGG + chr4_1:54971702-54971721 Msa0556700:CDS 45.0%
!! TACTTGAGTTTCTGGTTGGG+AGG + chr4_1:54971955-54971974 Msa0556700:CDS 45.0%
ACCTGAAAGTCCGGTTATGT+CGG - chr4_1:54971991-54972010 None:intergenic 45.0%
! ATAACCGGACTTTCAGGTGA+GGG + chr4_1:54971993-54972012 Msa0556700:CDS 45.0%
! AAGGCACAGGAGTATGTTTG+TGG + chr4_1:54972020-54972039 Msa0556700:CDS 45.0%
! AGGCACAGGAGTATGTTTGT+GGG + chr4_1:54972021-54972040 Msa0556700:CDS 45.0%
ATTGCTCCAAGTAGAGTTGC+TGG - chr4_1:54972178-54972197 None:intergenic 45.0%
GAAACAATCGTTCTGTTGCG+TGG + chr4_1:54972238-54972257 Msa0556700:three_prime_UTR 45.0%
! GGACTTTTCACACACATGCA+CGG - chr4_1:54972415-54972434 None:intergenic 45.0%
!! TATTTATTAAAATAAAAAAG+TGG - chr4_1:54969929-54969948 None:intergenic 5.0%
GAATGGACAATGGGAAGGGA+CGG - chr4_1:54969306-54969325 None:intergenic 50.0%
GGCAAGAATGGACAATGGGA+AGG - chr4_1:54969311-54969330 None:intergenic 50.0%
GCAGAGGCAAGAATGGACAA+TGG - chr4_1:54969316-54969335 None:intergenic 50.0%
TTGTGAGGCAGAGGCAAGAA+TGG - chr4_1:54969323-54969342 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr4_1:54969376-54969395 None:intergenic 50.0%
!! GTTGCTCTGAGAGCCATTGT+TGG - chr4_1:54969466-54969485 None:intergenic 50.0%
! GATCTGAGACTGGCCATTTG+AGG - chr4_1:54969523-54969542 None:intergenic 50.0%
GGTGGAAGCCATGACGAATT+TGG - chr4_1:54969548-54969567 None:intergenic 50.0%
! TGACTTGGAACCAGAACGGA+GGG - chr4_1:54969569-54969588 None:intergenic 50.0%
GGTGAAATGATTGTTGGGGG+TGG + chr4_1:54969729-54969748 Msa0556700:intron 50.0%
TTGCTCACTGCAGCAAATCC+GGG + chr4_1:54970416-54970435 Msa0556700:intron 50.0%
TGAACATGCACTTCTCTGGG+AGG - chr4_1:54970810-54970829 None:intergenic 50.0%
!! CTTTTGGGGAGGCATAGAGT+GGG - chr4_1:54970838-54970857 None:intergenic 50.0%
!! TCTTTTGGGGAGGCATAGAG+TGG - chr4_1:54970839-54970858 None:intergenic 50.0%
GGTTGCCAACACTTCTCTAC+AGG - chr4_1:54970921-54970940 None:intergenic 50.0%
!! AGAGAAGTGTTGGCAACCAC+AGG + chr4_1:54970923-54970942 Msa0556700:CDS 50.0%
GTCCAAATAGCCCAAGGAGT+AGG - chr4_1:54971137-54971156 None:intergenic 50.0%
CTCCTTGGGCTATTTGGACA+AGG + chr4_1:54971138-54971157 Msa0556700:CDS 50.0%
!! GTACCTGATTGGCTCTGGAA+TGG + chr4_1:54971259-54971278 Msa0556700:CDS 50.0%
TAAGGGCTATTCTCAGTCCG+AGG - chr4_1:54971594-54971613 None:intergenic 50.0%
AGGGCGACCTTTATATCGCA+TGG + chr4_1:54971645-54971664 Msa0556700:CDS 50.0%
TATCGCATGGAAACACAGCC+AGG + chr4_1:54971658-54971677 Msa0556700:CDS 50.0%
!! AAACACAGCCAGGCTTGCTA+AGG + chr4_1:54971668-54971687 Msa0556700:CDS 50.0%
CTCATGGCGTTTCTCATCAG+AGG - chr4_1:54971736-54971755 None:intergenic 50.0%
CCATCATACATCAGGTGTGC+TGG - chr4_1:54971855-54971874 None:intergenic 50.0%
CCAGCACACCTGATGTATGA+TGG + chr4_1:54971852-54971871 Msa0556700:CDS 50.0%
AGTGTAGACTCCAATGCGCT+GGG - chr4_1:54971916-54971935 None:intergenic 50.0%
CATTGGAGTCTACACTGCCA+AGG + chr4_1:54971920-54971939 Msa0556700:CDS 50.0%
!! TTGAGTTTCTGGTTGGGAGG+TGG + chr4_1:54971958-54971977 Msa0556700:CDS 50.0%
! CATAACCGGACTTTCAGGTG+AGG + chr4_1:54971992-54972011 Msa0556700:CDS 50.0%
! ACTTTCAGGTGAGGGACGAA+AGG + chr4_1:54972001-54972020 Msa0556700:CDS 50.0%
GGTTGCCACCAAGAATCAGA+AGG + chr4_1:54972042-54972061 Msa0556700:CDS 50.0%
TCCAGCCTTCTGATTCTTGG+TGG - chr4_1:54972050-54972069 None:intergenic 50.0%
ACCAAGAATCAGAAGGCTGG+AGG + chr4_1:54972049-54972068 Msa0556700:CDS 50.0%
TCCTCCAGCCTTCTGATTCT+TGG - chr4_1:54972053-54972072 None:intergenic 50.0%
GAGAGCTTCAGCAAGAGCAA+AGG + chr4_1:54972073-54972092 Msa0556700:CDS 50.0%
GGTCACCGGAATACTTGAGT+TGG + chr4_1:54972489-54972508 Msa0556700:three_prime_UTR 50.0%
GGCCATTTGAGGGAGAGAGA+AGG - chr4_1:54969512-54969531 None:intergenic 55.0%
!! CTGACTTGGAACCAGAACGG+AGG - chr4_1:54969570-54969589 None:intergenic 55.0%
GGATCGGGCAGAAAATCCTG+TGG - chr4_1:54970942-54970961 None:intergenic 55.0%
AATAGCCCAAGGAGTAGGGC+TGG - chr4_1:54971132-54971151 None:intergenic 55.0%
GCCCTACTCCTTGGGCTATT+TGG + chr4_1:54971132-54971151 Msa0556700:CDS 55.0%
GCCCTTGTCCAAATAGCCCA+AGG - chr4_1:54971143-54971162 None:intergenic 55.0%
GGGCTATTTGGACAAGGGCA+TGG + chr4_1:54971144-54971163 Msa0556700:CDS 55.0%
! GGAACGCGGCGATTTGAAGT+TGG + chr4_1:54971689-54971708 Msa0556700:CDS 55.0%
CGTCTCGGCCATCATACATC+AGG - chr4_1:54971863-54971882 None:intergenic 55.0%
CAGTGTAGACTCCAATGCGC+TGG - chr4_1:54971917-54971936 None:intergenic 55.0%
!! GTTTCTGGTTGGGAGGTGGA+AGG + chr4_1:54971962-54971981 Msa0556700:CDS 55.0%
TGGAAGGTGGCCGACATAAC+CGG + chr4_1:54971978-54971997 Msa0556700:CDS 55.0%
GCCGACATAACCGGACTTTC+AGG + chr4_1:54971987-54972006 Msa0556700:CDS 55.0%
TCGTCCCTCACCTGAAAGTC+CGG - chr4_1:54972000-54972019 None:intergenic 55.0%
GCCACCAAGAATCAGAAGGC+TGG + chr4_1:54972046-54972065 Msa0556700:CDS 55.0%
ATGGCTTCCACCCTCCGTTC+TGG + chr4_1:54969556-54969575 Msa0556700:CDS 60.0%
CTTGGAACCAGAACGGAGGG+TGG - chr4_1:54969566-54969585 None:intergenic 60.0%
!! CGATGTTGGTGGCCGTCCAA+TGG + chr4_1:54970305-54970324 Msa0556700:intron 60.0%
ATCGTTGGAGGGTTGGGCTG+AGG + chr4_1:54970872-54970891 Msa0556700:CDS 60.0%
CTGCCCGATCCTTCCTCAGA+TGG + chr4_1:54970951-54970970 Msa0556700:CDS 60.0%
AGGTGCCAGCCCTACTCCTT+GGG + chr4_1:54971124-54971143 Msa0556700:CDS 60.0%
!! GCCAGGCTTGCTAAGGAACG+CGG + chr4_1:54971675-54971694 Msa0556700:CDS 60.0%
TCTGCTGTTGCCCAGCGCAT+TGG + chr4_1:54971903-54971922 Msa0556700:CDS 60.0%
TCTGGTTGGGAGGTGGAAGG+TGG + chr4_1:54971965-54971984 Msa0556700:CDS 60.0%
! AGGTGAGGGACGAAAGGCAC+AGG + chr4_1:54972007-54972026 Msa0556700:CDS 60.0%
CAGGTGCCAGCCCTACTCCT+TGG + chr4_1:54971123-54971142 Msa0556700:CDS 65.0%
GCCGCGTTCCTTAGCAAGCC+TGG - chr4_1:54971679-54971698 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 54969284 54972601 54969284 ID=Msa0556700;Name=Msa0556700
chr4_1 mRNA 54969284 54972601 54969284 ID=Msa0556700-mRNA-1;Parent=Msa0556700;Name=Msa0556700-mRNA-1;_AED=0.01;_eAED=0.01;_QI=185|1|1|1|1|1|3|453|393
chr4_1 exon 54969284 54969584 54969284 ID=Msa0556700-mRNA-1:exon:16278;Parent=Msa0556700-mRNA-1
chr4_1 exon 54970776 54971280 54970776 ID=Msa0556700-mRNA-1:exon:16279;Parent=Msa0556700-mRNA-1
chr4_1 exon 54971588 54972601 54971588 ID=Msa0556700-mRNA-1:exon:16280;Parent=Msa0556700-mRNA-1
chr4_1 five_prime_UTR 54969284 54969468 54969284 ID=Msa0556700-mRNA-1:five_prime_utr;Parent=Msa0556700-mRNA-1
chr4_1 CDS 54969469 54969584 54969469 ID=Msa0556700-mRNA-1:cds;Parent=Msa0556700-mRNA-1
chr4_1 CDS 54970776 54971280 54970776 ID=Msa0556700-mRNA-1:cds;Parent=Msa0556700-mRNA-1
chr4_1 CDS 54971588 54972148 54971588 ID=Msa0556700-mRNA-1:cds;Parent=Msa0556700-mRNA-1
chr4_1 three_prime_UTR 54972149 54972601 54972149 ID=Msa0556700-mRNA-1:three_prime_utr;Parent=Msa0556700-mRNA-1
Gene Sequence

>Msa0556700

ATGGCTCTCAGAGCAACCCCTTTCCCTACACAAACATCTTCCTTCTCTCTCCCTCAAATGGCCAGTCTCAGATCTCCCAAATTCGTCATGGCTTCCACCCTCCGTTCTGGTTCCAAAGAGGTTGAAAATATTAAGAAGGCTTTCACACCTCCCAGAGAAGTGCATGTTCAAGTAACCCACTCTATGCCTCCCCAAAAGATTGAAATTTTCAAATCGTTGGAGGGTTGGGCTGAGGAAACCTTATTGACTCACCTTAAACCTGTAGAGAAGTGTTGGCAACCACAGGATTTTCTGCCCGATCCTTCCTCAGATGGATTCGAAGAGCAAGTGAAGGAACTGAGAGAGAGGGCAAAAGAGCTTCCAGATGATTACTTTGTTGTTCTGGTTGGAGATATGGTCACAGAAGAAGCTCTTCCTACTTACCAAACTATGCTTAATACTTTGGATGGAGTTCGTGATGAAACAGGTGCCAGCCCTACTCCTTGGGCTATTTGGACAAGGGCATGGACAGCTGAAGAAAATAGACATGGCGATCTTCTTAACAAGTATCTCTACTTGTCCGGCCGTGTTGATATGAGACAAATTGAGAAGACAATTCAGTACCTGATTGGCTCTGGAATGGATCCTCGGACTGAGAATAGCCCTTACCTTGGCTTTATCTACACTTCATTTCAAGAGAGGGCGACCTTTATATCGCATGGAAACACAGCCAGGCTTGCTAAGGAACGCGGCGATTTGAAGTTGGCTCAGATCTGTGGTCTGATTGCCTCTGATGAGAAACGCCATGAGACTGCTTACACAAAGATAGTGGAAAAGCTATTGGAGATTGATCCTGATGGAACAGTTATTGCTTTTGCTGACATGATGAGGAAGAAAATTGCTATGCCAGCACACCTGATGTATGATGGCCGAGACGACAACCTGTTTGATAACTATTCTGCTGTTGCCCAGCGCATTGGAGTCTACACTGCCAAGGACTATGCTGATATACTTGAGTTTCTGGTTGGGAGGTGGAAGGTGGCCGACATAACCGGACTTTCAGGTGAGGGACGAAAGGCACAGGAGTATGTTTGTGGGTTGCCACCAAGAATCAGAAGGCTGGAGGAGAGAGCTTCAGCAAGAGCAAAGGAATCATCCAAACTTGCATTCAGTTGGATTCATGATAGGGAAGTACTACTCTAA
Protein sequence

>Msa0556700

MALRATPFPTQTSSFSLPQMASLRSPKFVMASTLRSGSKEVENIKKAFTPPREVHVQVTHSMPPQKIEIFKSLEGWAEETLLTHLKPVEKCWQPQDFLPDPSSDGFEEQVKELRERAKELPDDYFVVLVGDMVTEEALPTYQTMLNTLDGVRDETGASPTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKERGDLKLAQICGLIASDEKRHETAYTKIVEKLLEIDPDGTVIAFADMMRKKIAMPAHLMYDGRDDNLFDNYSAVAQRIGVYTAKDYADILEFLVGRWKVADITGLSGEGRKAQEYVCGLPPRIRRLEERASARAKESSKLAFSWIHDREVLL*