AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0691320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691320 MtrunA17_Chr4g0040451 97.260 219 6 0 1 219 1 219 1.62e-159 439
Msa0691320 MtrunA17_Chr6g0465041 29.932 147 97 2 79 219 77 223 2.74e-16 74.7
Msa0691320 MtrunA17_Chr1g0207521 24.823 141 105 1 75 214 107 247 7.00e-13 65.9
Msa0691320 MtrunA17_Chr7g0255351 27.869 183 113 3 37 219 92 255 1.44e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691320 AT2G42770.1 72.826 184 47 1 39 219 49 232 8.84e-96 279
Msa0691320 AT5G43140.1 29.452 146 102 1 75 219 104 249 6.64e-18 80.1
Msa0691320 AT4G33905.1 29.078 141 99 1 75 214 108 248 3.33e-15 72.8
Msa0691320 AT2G14860.1 26.027 146 106 2 76 219 99 244 7.98e-13 65.9

Find 93 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTTCCCACTTTACTTTA+TGG 0.111803 4_4:+59370514 Msa0691320:CDS
TCTTTGCATGGAACAATTTA+TGG 0.112525 4_4:+59370449 Msa0691320:CDS
TGTCAATGGGCTCAATATTT+TGG 0.126119 4_4:+59371665 Msa0691320:CDS
CTGTCAGTGTATTAAATTTC+TGG 0.134675 4_4:+59370640 Msa0691320:CDS
TTCCAATTAAGACTTATATT+TGG 0.167204 4_4:+59371991 Msa0691320:three_prime_UTR
TTGGGGAATTGAAGAAAATT+TGG 0.189452 4_4:+59369395 Msa0691320:five_prime_UTR
CACATGGACCCAACACAATT+TGG 0.192502 4_4:-59370414 None:intergenic
TCCCAAATATAAGTCTTAAT+TGG 0.200883 4_4:-59371993 None:intergenic
AACATTGCATGTGCTTAAAA+AGG 0.248373 4_4:+59372156 Msa0691320:three_prime_UTR
ATAATTTGAGTACATTATTA+TGG 0.248665 4_4:+59372015 Msa0691320:three_prime_UTR
TTGATGGAAATTCTTACTTT+TGG 0.263005 4_4:-59372237 None:intergenic
ACTGCCTCCCAGCATGTTTC+CGG 0.270902 4_4:-59372065 None:intergenic
CGCCGTCGAGAATCCGGTTT+CGG 0.272446 4_4:-59369657 None:intergenic
TGTCCAGAACCTAATGTTAA+AGG 0.277336 4_4:+59370267 Msa0691320:CDS
CGTCGGATTCGTTCGAATTC+GGG 0.285221 4_4:+59369678 Msa0691320:CDS
GGAATGGACGCGATTGGATT+TGG 0.285779 4_4:+59369603 Msa0691320:exon
TCCAATTAAGACTTATATTT+GGG 0.294414 4_4:+59371992 Msa0691320:three_prime_UTR
GCGTCGGATTCGTTCGAATT+CGG 0.299605 4_4:+59369677 Msa0691320:CDS
GTTAATTGTTGATCTGATTT+CGG 0.300060 4_4:+59372037 Msa0691320:three_prime_UTR
AACATTAGGTTCTGGACATT+TGG 0.316911 4_4:-59370262 None:intergenic
GCCGCGTCGCTTACTCTTAC+TGG 0.346934 4_4:+59369759 Msa0691320:CDS
GGTTCTGGACATTTGGCTTT+GGG 0.347006 4_4:-59370255 None:intergenic
GTCACCCTTGGAATGATCTT+TGG 0.351053 4_4:+59372096 Msa0691320:three_prime_UTR
CTGATTCTGATGACCCAATT+GGG 0.351503 4_4:+59369377 Msa0691320:five_prime_UTR
GCCGTCGAGAATCCGGTTTC+GGG 0.360252 4_4:-59369656 None:intergenic
ACAAAAGCTTTCAGAGCTTC+CGG 0.364498 4_4:+59370474 Msa0691320:CDS
ACTTGTTCATAGTTGATGAT+AGG 0.367450 4_4:-59371696 None:intergenic
GAATGGACGCGATTGGATTT+GGG 0.369109 4_4:+59369604 Msa0691320:exon
AGGTTCTGGACATTTGGCTT+TGG 0.375932 4_4:-59370256 None:intergenic
AGCATACTACCTTTAACATT+AGG 0.387279 4_4:-59370276 None:intergenic
CTACCTTTAACATTAGGTTC+TGG 0.394352 4_4:-59370270 None:intergenic
CGTTCGAATTCGGGTTCACC+TGG 0.399031 4_4:+59369687 Msa0691320:CDS
GGACCAGATGAGCTATTGTT+TGG 0.399854 4_4:+59372177 Msa0691320:three_prime_UTR
CAGAGTGGCTTTCATGTCAA+TGG 0.403097 4_4:+59371651 Msa0691320:CDS
TAATAGAGAGATTATTATAT+AGG 0.404073 4_4:+59371960 Msa0691320:three_prime_UTR
TAACCAAACAATAGCTCATC+TGG 0.417797 4_4:-59372180 None:intergenic
TGGTATGTTACAATACTTGT+TGG 0.424655 4_4:+59372116 Msa0691320:three_prime_UTR
ATCCGACGCCGTCGAGAATC+CGG 0.443852 4_4:-59369663 None:intergenic
CCTGGTTCCGCCGTCGGAGG+TGG 0.446747 4_4:+59369705 Msa0691320:CDS
TTACTAAACCAAATTGTGTT+GGG 0.447561 4_4:+59370406 Msa0691320:CDS
CAGAAATTTAATACACTGAC+AGG 0.448515 4_4:-59370639 None:intergenic
GGAGACAATGGTCAAGCAAC+TGG 0.451380 4_4:-59370234 None:intergenic
ACTGATTCTGATGACCCAAT+TGG 0.452279 4_4:+59369376 Msa0691320:five_prime_UTR
TTGTGGTTTAGAATTGTTAA+CGG 0.452285 4_4:+59369421 Msa0691320:five_prime_UTR
CGGAAAGACCGGAAACATGC+TGG 0.458895 4_4:+59372057 Msa0691320:three_prime_UTR
TCTCTTTAGCTTTGTTCCAC+CGG 0.468029 4_4:-59369806 None:intergenic
GACATGAAAGCCACTCTGGC+TGG 0.468430 4_4:-59371646 None:intergenic
CATTGACATGAAAGCCACTC+TGG 0.472403 4_4:-59371650 None:intergenic
CTGGAAGTGGGACCCGAAAC+CGG 0.475595 4_4:+59369644 Msa0691320:CDS
GAGTGGTGAAAATGCCTCTC+AGG 0.482368 4_4:+59369827 Msa0691320:CDS
GGTTCACCTGGTTCCGCCGT+CGG 0.491942 4_4:+59369699 Msa0691320:CDS
TTTACTAAACCAAATTGTGT+TGG 0.492300 4_4:+59370405 Msa0691320:CDS
GACGCGATTGGATTTGGGAG+TGG 0.493904 4_4:+59369609 Msa0691320:CDS
GCTCTGCGAATGACTTCCTA+TGG 0.499911 4_4:+59370175 Msa0691320:CDS
TGAAGAAAATTTGGTGCTTG+TGG 0.504789 4_4:+59369404 Msa0691320:five_prime_UTR
TGATCTGATTTCGGAAAGAC+CGG 0.506115 4_4:+59372046 Msa0691320:three_prime_UTR
AAGAACCAGGGCCATAGAAA+AGG 0.506838 4_4:-59370201 None:intergenic
TTATCAGTTTCCGCTGAAGC+AGG 0.512856 4_4:+59369728 Msa0691320:CDS
TGGTACCAGGCAAAAGAACC+AGG 0.517678 4_4:-59370214 None:intergenic
AGAGTGGCTTTCATGTCAAT+GGG 0.522920 4_4:+59371652 Msa0691320:CDS
CCACCTCCGACGGCGGAACC+AGG 0.528246 4_4:-59369705 None:intergenic
TTTGTACCATAAAGTAAAGT+GGG 0.532650 4_4:-59370520 None:intergenic
AAAGCCACTCTGGCTGGAAG+AGG 0.533546 4_4:-59371640 None:intergenic
GTTTGTACCATAAAGTAAAG+TGG 0.534203 4_4:-59370521 None:intergenic
CATTTGGCTTTGGGAGACAA+TGG 0.544393 4_4:-59370246 None:intergenic
GGTGCCTCTTCCAGCCAGAG+TGG 0.561435 4_4:+59371636 Msa0691320:CDS
GCGGTTAACGCCTGCTTCAG+CGG 0.561673 4_4:-59369738 None:intergenic
CTGATAACCACCTCCGACGG+CGG 0.561979 4_4:-59369712 None:intergenic
TCATTGCGGTTATCTTTGCA+TGG 0.564794 4_4:+59370437 Msa0691320:CDS
TGTTTGAAATTCTTACAATG+AGG 0.567069 4_4:+59371752 Msa0691320:three_prime_UTR
ATGGTCAAGCAACTGGTACC+AGG 0.567339 4_4:-59370227 None:intergenic
TCACCTGGTTCCGCCGTCGG+AGG 0.567431 4_4:+59369702 Msa0691320:CDS
AACCGGATTCTCGACGGCGT+CGG 0.567671 4_4:+59369661 Msa0691320:CDS
TGCGAGGGAATGGACGCGAT+TGG 0.572598 4_4:+59369597 Msa0691320:exon
CGATTGCTCAGCTCAGTAGC+CGG 0.582836 4_4:+59369787 Msa0691320:CDS
GGAAAGACCGGAAACATGCT+GGG 0.587992 4_4:+59372058 Msa0691320:three_prime_UTR
ACCCGAAACCGGATTCTCGA+CGG 0.607175 4_4:+59369655 Msa0691320:CDS
ACATACCAAAGATCATTCCA+AGG 0.607226 4_4:-59372101 None:intergenic
AAGATAACCGCAATGACACA+TGG 0.607959 4_4:-59370430 None:intergenic
TGATTCTGATGACCCAATTG+GGG 0.625195 4_4:+59369378 Msa0691320:five_prime_UTR
AAACTGATAACCACCTCCGA+CGG 0.626984 4_4:-59369715 None:intergenic
GCCATAGAAAAGGAATCCAT+AGG 0.637264 4_4:-59370191 None:intergenic
ATTTGACACTCTGAAAGCTG+TGG 0.644992 4_4:+59371884 Msa0691320:three_prime_UTR
TTGCTCAGCTCAGTAGCCGG+TGG 0.657176 4_4:+59369790 Msa0691320:CDS
TGGAACAAAGCTAAAGAGAG+TGG 0.660771 4_4:+59369810 Msa0691320:CDS
GTTGGGTCCATGTGTCATTG+CGG 0.690123 4_4:+59370423 Msa0691320:CDS
CATACCAAAGATCATTCCAA+GGG 0.694101 4_4:-59372100 None:intergenic
CAATATTTCACTAACCTGAG+AGG 0.702533 4_4:-59369841 None:intergenic
AGAAATTTAATACACTGACA+GGG 0.717165 4_4:-59370638 None:intergenic
GGTACCAGGCAAAAGAACCA+GGG 0.724550 4_4:-59370213 None:intergenic
AGTAAGAGTAAGCGACGCGG+CGG 0.748667 4_4:-59369757 None:intergenic
AAGACCGGAAACATGCTGGG+AGG 0.755788 4_4:+59372061 Msa0691320:three_prime_UTR
ACCAGTAAGAGTAAGCGACG+CGG 0.763238 4_4:-59369760 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATAAAAATCGAATTTTTA+TGG - chr4_4:59369450-59369469 None:intergenic 10.0%
!!! GTTTTTTTTTAATTTGAAAA+AGG + chr4_4:59369492-59369511 Msa0691320:five_prime_UTR 10.0%
!!! TAAAATATAGTATATTGATT+AGG - chr4_4:59371147-59371166 None:intergenic 10.0%
!!! ACAAAATAAGCTTATTTTTT+AGG + chr4_4:59369996-59370015 Msa0691320:intron 15.0%
!! TATGAAATATTAACCAAAAA+AGG + chr4_4:59370101-59370120 Msa0691320:intron 15.0%
!! ATATGTGTGTTTATATAAAA+CGG - chr4_4:59370765-59370784 None:intergenic 15.0%
!! TTTAAGAAAATAGAAGTAAT+TGG + chr4_4:59371368-59371387 Msa0691320:intron 15.0%
!! TAATAGAGAGATTATTATAT+AGG + chr4_4:59371960-59371979 Msa0691320:three_prime_UTR 15.0%
!! ATAATTTGAGTACATTATTA+TGG + chr4_4:59372015-59372034 Msa0691320:three_prime_UTR 15.0%
!!! TTTTAGTTAATTACATTTGA+TGG - chr4_4:59372256-59372275 None:intergenic 15.0%
!! TAAGAAAAAGTTGCATATAT+AGG - chr4_4:59370838-59370857 None:intergenic 20.0%
!!! TAAGTAATATAAGTGTCATT+TGG + chr4_4:59371091-59371110 Msa0691320:intron 20.0%
!!! TTCCACTTTTATAATTTGTT+TGG + chr4_4:59371799-59371818 Msa0691320:intron 20.0%
!! GTTAATTAATCTACAAATAC+AGG - chr4_4:59371844-59371863 None:intergenic 20.0%
!! TTCCAATTAAGACTTATATT+TGG + chr4_4:59371991-59372010 Msa0691320:three_prime_UTR 20.0%
!! TCCAATTAAGACTTATATTT+GGG + chr4_4:59371992-59372011 Msa0691320:three_prime_UTR 20.0%
!! TTGTGGTTTAGAATTGTTAA+CGG + chr4_4:59369421-59369440 Msa0691320:five_prime_UTR 25.0%
! ATATTGTAAGCATCTCTATT+AGG + chr4_4:59369897-59369916 Msa0691320:intron 25.0%
! TATTGTAAGCATCTCTATTA+GGG + chr4_4:59369898-59369917 Msa0691320:intron 25.0%
! TATATTGTTGTGTTATCTAG+TGG + chr4_4:59370059-59370078 Msa0691320:intron 25.0%
!! TTATCTAGTGGTGAATATTT+TGG + chr4_4:59370071-59370090 Msa0691320:intron 25.0%
!! TAACCAAAAAAGGTTTGTTT+AGG + chr4_4:59370111-59370130 Msa0691320:intron 25.0%
!! GTTTAAATTATAGAAGCATG+AGG + chr4_4:59370319-59370338 Msa0691320:intron 25.0%
!!! TTTTTTATTCTTTCGTTGAC+AGG + chr4_4:59370381-59370400 Msa0691320:intron 25.0%
! TTTACTAAACCAAATTGTGT+TGG + chr4_4:59370405-59370424 Msa0691320:CDS 25.0%
! TTACTAAACCAAATTGTGTT+GGG + chr4_4:59370406-59370425 Msa0691320:CDS 25.0%
! TTTGTACCATAAAGTAAAGT+GGG - chr4_4:59370523-59370542 None:intergenic 25.0%
! AGAAATTTAATACACTGACA+GGG - chr4_4:59370641-59370660 None:intergenic 25.0%
!! TAGATTATACCTTTTCACTA+GGG - chr4_4:59370814-59370833 None:intergenic 25.0%
! AACTGCAACTATAAGATAAA+GGG - chr4_4:59370993-59371012 None:intergenic 25.0%
! AAACTGCAACTATAAGATAA+AGG - chr4_4:59370994-59371013 None:intergenic 25.0%
! AAATCTTGAAGTTAAGCAAT+TGG - chr4_4:59371058-59371077 None:intergenic 25.0%
! TCCATATTAAGAAAATTAGG+CGG - chr4_4:59371244-59371263 None:intergenic 25.0%
! TCGTCCATATTAAGAAAATT+AGG - chr4_4:59371247-59371266 None:intergenic 25.0%
! TGTAGGTATAAATAGCTATT+AGG + chr4_4:59371473-59371492 Msa0691320:intron 25.0%
! GTAGGTATAAATAGCTATTA+GGG + chr4_4:59371474-59371493 Msa0691320:intron 25.0%
! CATACTTACTCTACTAATTA+AGG + chr4_4:59371515-59371534 Msa0691320:intron 25.0%
! TGATCATTCTACTAATTATC+TGG + chr4_4:59371541-59371560 Msa0691320:intron 25.0%
! ACTAATTATCTGGTTATTTG+TGG + chr4_4:59371551-59371570 Msa0691320:intron 25.0%
!!! TATTTTTATGGCTCTGTATA+GGG + chr4_4:59371612-59371631 Msa0691320:intron 25.0%
!! TGTTTGAAATTCTTACAATG+AGG + chr4_4:59371752-59371771 Msa0691320:three_prime_UTR 25.0%
! AGCCAAACAAATTATAAAAG+TGG - chr4_4:59371804-59371823 None:intergenic 25.0%
! AATCTACAAATACAGGATAA+TGG - chr4_4:59371837-59371856 None:intergenic 25.0%
! TCCCAAATATAAGTCTTAAT+TGG - chr4_4:59371996-59372015 None:intergenic 25.0%
! GTTAATTGTTGATCTGATTT+CGG + chr4_4:59372037-59372056 Msa0691320:three_prime_UTR 25.0%
!!! TACTTTTGGAATTAACCAAT+TGG - chr4_4:59372226-59372245 None:intergenic 25.0%
!! TTGATGGAAATTCTTACTTT+TGG - chr4_4:59372240-59372259 None:intergenic 25.0%
! TTTTCTTCAATTCCCCAATT+GGG - chr4_4:59369393-59369412 None:intergenic 30.0%
! ATTTTCTTCAATTCCCCAAT+TGG - chr4_4:59369394-59369413 None:intergenic 30.0%
TTGGGGAATTGAAGAAAATT+TGG + chr4_4:59369395-59369414 Msa0691320:five_prime_UTR 30.0%
!!! CATCCTAAACAAACCTTTTT+TGG - chr4_4:59370117-59370136 None:intergenic 30.0%
AGCATACTACCTTTAACATT+AGG - chr4_4:59370279-59370298 None:intergenic 30.0%
CTTCATCTATAAATGATGTC+TGG + chr4_4:59370297-59370316 Msa0691320:intron 30.0%
TCTTTGCATGGAACAATTTA+TGG + chr4_4:59370449-59370468 Msa0691320:CDS 30.0%
! GCATCTCTTTTGTATTTTTC+CGG - chr4_4:59370496-59370515 None:intergenic 30.0%
GTTTGTACCATAAAGTAAAG+TGG - chr4_4:59370524-59370543 None:intergenic 30.0%
AGTAAGTCACAATAACACTT+AGG - chr4_4:59370554-59370573 None:intergenic 30.0%
AACAGACAAATTACACAGAA+AGG - chr4_4:59370599-59370618 None:intergenic 30.0%
CAGAAATTTAATACACTGAC+AGG - chr4_4:59370642-59370661 None:intergenic 30.0%
CTGTCAGTGTATTAAATTTC+TGG + chr4_4:59370640-59370659 Msa0691320:CDS 30.0%
CAAGCAGAATATCAGATTTA+AGG - chr4_4:59370681-59370700 None:intergenic 30.0%
! CTAGATTATACCTTTTCACT+AGG - chr4_4:59370815-59370834 None:intergenic 30.0%
AAAAATGAACTAGCATGTCA+TGG - chr4_4:59370900-59370919 None:intergenic 30.0%
!!! GACATGCTAGTTCATTTTTT+AGG + chr4_4:59370901-59370920 Msa0691320:intron 30.0%
ACTGCAACTATAAGATAAAG+GGG - chr4_4:59370992-59371011 None:intergenic 30.0%
TTATAGTTGCAGTTTGCAAA+TGG + chr4_4:59370999-59371018 Msa0691320:intron 30.0%
! ACCGCCTAATTTTCTTAATA+TGG + chr4_4:59371240-59371259 Msa0691320:intron 30.0%
GTCTATAAGTATGGTTGTTA+GGG + chr4_4:59371283-59371302 Msa0691320:intron 30.0%
!!! TTGTTAGGGATTTTGTTGTT+TGG + chr4_4:59371297-59371316 Msa0691320:intron 30.0%
!!! TGTTAGGGATTTTGTTGTTT+GGG + chr4_4:59371298-59371317 Msa0691320:intron 30.0%
CTATACAGAGCCATAAAAAT+AGG - chr4_4:59371613-59371632 None:intergenic 30.0%
!!! CTATTTTTATGGCTCTGTAT+AGG + chr4_4:59371611-59371630 Msa0691320:intron 30.0%
!! ACTTGTTCATAGTTGATGAT+AGG - chr4_4:59371699-59371718 None:intergenic 30.0%
TGGTATGTTACAATACTTGT+TGG + chr4_4:59372116-59372135 Msa0691320:three_prime_UTR 30.0%
AACATTGCATGTGCTTAAAA+AGG + chr4_4:59372156-59372175 Msa0691320:three_prime_UTR 30.0%
!! TGAAGAAAATTTGGTGCTTG+TGG + chr4_4:59369404-59369423 Msa0691320:five_prime_UTR 35.0%
CAATATTTCACTAACCTGAG+AGG - chr4_4:59369844-59369863 None:intergenic 35.0%
CGAGGCAAAGTAGTATATTA+AGG + chr4_4:59369968-59369987 Msa0691320:intron 35.0%
!!! GTGGTGAATATTTTGGAGTT+TGG + chr4_4:59370078-59370097 Msa0691320:intron 35.0%
! TCCTATGGATTCCTTTTCTA+TGG + chr4_4:59370190-59370209 Msa0691320:CDS 35.0%
!! AACATTAGGTTCTGGACATT+TGG - chr4_4:59370265-59370284 None:intergenic 35.0%
TGTCCAGAACCTAATGTTAA+AGG + chr4_4:59370267-59370286 Msa0691320:CDS 35.0%
CTACCTTTAACATTAGGTTC+TGG - chr4_4:59370273-59370292 None:intergenic 35.0%
ACAATAACACTTAGGCAATG+AGG - chr4_4:59370546-59370565 None:intergenic 35.0%
! TCTGTGTAATTTGTCTGTTC+AGG + chr4_4:59370600-59370619 Msa0691320:intron 35.0%
!!! TCTGTTCAGGTTTTAGATTC+TGG + chr4_4:59370613-59370632 Msa0691320:intron 35.0%
AATTCACTTCCCTAGTGAAA+AGG + chr4_4:59370802-59370821 Msa0691320:intron 35.0%
!!! TGTCTTGCATTTTAGAGTGA+GGG + chr4_4:59371022-59371041 Msa0691320:intron 35.0%
ACAGCAAAGGTCTATAAGTA+TGG + chr4_4:59371274-59371293 Msa0691320:intron 35.0%
GGTCTATAAGTATGGTTGTT+AGG + chr4_4:59371282-59371301 Msa0691320:intron 35.0%
!!! ACCTTCCTTGCCTATTTTTA+TGG + chr4_4:59371600-59371619 Msa0691320:intron 35.0%
!! TGTCAATGGGCTCAATATTT+TGG + chr4_4:59371665-59371684 Msa0691320:CDS 35.0%
!! AGAGTGTCAAATCTTTTGCA+GGG - chr4_4:59371876-59371895 None:intergenic 35.0%
CATACCAAAGATCATTCCAA+GGG - chr4_4:59372103-59372122 None:intergenic 35.0%
ACATACCAAAGATCATTCCA+AGG - chr4_4:59372104-59372123 None:intergenic 35.0%
TAACCAAACAATAGCTCATC+TGG - chr4_4:59372183-59372202 None:intergenic 35.0%
! TTCAGCTTTTTGCAACCAAT+TGG + chr4_4:59372208-59372227 Msa0691320:three_prime_UTR 35.0%
! ACTGATTCTGATGACCCAAT+TGG + chr4_4:59369376-59369395 Msa0691320:five_prime_UTR 40.0%
CTGATTCTGATGACCCAATT+GGG + chr4_4:59369377-59369396 Msa0691320:five_prime_UTR 40.0%
TGATTCTGATGACCCAATTG+GGG + chr4_4:59369378-59369397 Msa0691320:five_prime_UTR 40.0%
! AGCATAAAACGCTGCGTTTT+TGG + chr4_4:59369523-59369542 Msa0691320:five_prime_UTR 40.0%
!! GGATTTGGGAGTGGATTTTT+CGG + chr4_4:59369618-59369637 Msa0691320:CDS 40.0%
!! GATTTGGGAGTGGATTTTTC+GGG + chr4_4:59369619-59369638 Msa0691320:CDS 40.0%
!!! ATTTTTCGGGTTCTGGAAGT+GGG + chr4_4:59369632-59369651 Msa0691320:CDS 40.0%
!! TCTCTTTAGCTTTGTTCCAC+CGG - chr4_4:59369809-59369828 None:intergenic 40.0%
TGGAACAAAGCTAAAGAGAG+TGG + chr4_4:59369810-59369829 Msa0691320:CDS 40.0%
GCCATAGAAAAGGAATCCAT+AGG - chr4_4:59370194-59370213 None:intergenic 40.0%
! ATAGAAGCATGAGGCAGTTA+AGG + chr4_4:59370328-59370347 Msa0691320:intron 40.0%
AAGATAACCGCAATGACACA+TGG - chr4_4:59370433-59370452 None:intergenic 40.0%
TCATTGCGGTTATCTTTGCA+TGG + chr4_4:59370437-59370456 Msa0691320:CDS 40.0%
ACAAAAGCTTTCAGAGCTTC+CGG + chr4_4:59370474-59370493 Msa0691320:CDS 40.0%
GCTCTTCCCACTTTACTTTA+TGG + chr4_4:59370514-59370533 Msa0691320:CDS 40.0%
GTGAGTATCTTGTATCGAGT+TGG + chr4_4:59370950-59370969 Msa0691320:intron 40.0%
!!! GTGTCTTGCATTTTAGAGTG+AGG + chr4_4:59371021-59371040 Msa0691320:intron 40.0%
!!! GTCTTGCATTTTAGAGTGAG+GGG + chr4_4:59371023-59371042 Msa0691320:intron 40.0%
!!! TCTTGCATTTTAGAGTGAGG+GGG + chr4_4:59371024-59371043 Msa0691320:intron 40.0%
GTGCCTTCAATAAGAAGTCT+CGG + chr4_4:59371430-59371449 Msa0691320:intron 40.0%
TACATCGCTTGTGATCATGT+AGG + chr4_4:59371456-59371475 Msa0691320:intron 40.0%
GCCATAAAAATAGGCAAGGA+AGG - chr4_4:59371604-59371623 None:intergenic 40.0%
CAGAGCCATAAAAATAGGCA+AGG - chr4_4:59371608-59371627 None:intergenic 40.0%
!! TTTTATGGCTCTGTATAGGG+TGG + chr4_4:59371615-59371634 Msa0691320:intron 40.0%
AGAGTGGCTTTCATGTCAAT+GGG + chr4_4:59371652-59371671 Msa0691320:CDS 40.0%
!! CAGAGTGTCAAATCTTTTGC+AGG - chr4_4:59371877-59371896 None:intergenic 40.0%
! ATTTGACACTCTGAAAGCTG+TGG + chr4_4:59371884-59371903 Msa0691320:three_prime_UTR 40.0%
TGATCTGATTTCGGAAAGAC+CGG + chr4_4:59372046-59372065 Msa0691320:three_prime_UTR 40.0%
!! TGCGTATTTTTGTGTGTGCG+AGG + chr4_4:59369581-59369600 Msa0691320:five_prime_UTR 45.0%
!! GCGTATTTTTGTGTGTGCGA+GGG + chr4_4:59369582-59369601 Msa0691320:five_prime_UTR 45.0%
! TTTTTGTGTGTGCGAGGGAA+TGG + chr4_4:59369587-59369606 Msa0691320:exon 45.0%
GAATGGACGCGATTGGATTT+GGG + chr4_4:59369604-59369623 Msa0691320:exon 45.0%
!!! GATTTTTCGGGTTCTGGAAG+TGG + chr4_4:59369631-59369650 Msa0691320:CDS 45.0%
AAACTGATAACCACCTCCGA+CGG - chr4_4:59369718-59369737 None:intergenic 45.0%
TTATCAGTTTCCGCTGAAGC+AGG + chr4_4:59369728-59369747 Msa0691320:CDS 45.0%
TTAGGGCTCTGTGAATCTTG+AGG + chr4_4:59369915-59369934 Msa0691320:intron 45.0%
AAGAACCAGGGCCATAGAAA+AGG - chr4_4:59370204-59370223 None:intergenic 45.0%
!! CATTTGGCTTTGGGAGACAA+TGG - chr4_4:59370249-59370268 None:intergenic 45.0%
!! GGTTCTGGACATTTGGCTTT+GGG - chr4_4:59370258-59370277 None:intergenic 45.0%
!! AGGTTCTGGACATTTGGCTT+TGG - chr4_4:59370259-59370278 None:intergenic 45.0%
CACATGGACCCAACACAATT+TGG - chr4_4:59370417-59370436 None:intergenic 45.0%
!!! CTTGCATTTTAGAGTGAGGG+GGG + chr4_4:59371025-59371044 Msa0691320:intron 45.0%
GGACGAAGTAGTAACAGCAA+AGG + chr4_4:59371261-59371280 Msa0691320:intron 45.0%
! GTAACTACGTACGCCAGTTT+TGG + chr4_4:59371393-59371412 Msa0691320:intron 45.0%
! TTCTTATTGAAGGCACGTGC+GGG - chr4_4:59371426-59371445 None:intergenic 45.0%
! CTTCTTATTGAAGGCACGTG+CGG - chr4_4:59371427-59371446 None:intergenic 45.0%
GCACCGAGACTTCTTATTGA+AGG - chr4_4:59371436-59371455 None:intergenic 45.0%
CATTGACATGAAAGCCACTC+TGG - chr4_4:59371653-59371672 None:intergenic 45.0%
CAGAGTGGCTTTCATGTCAA+TGG + chr4_4:59371651-59371670 Msa0691320:CDS 45.0%
!!! CAGTTTTTAGGTGTCACCCT+TGG + chr4_4:59372084-59372103 Msa0691320:three_prime_UTR 45.0%
GTCACCCTTGGAATGATCTT+TGG + chr4_4:59372096-59372115 Msa0691320:three_prime_UTR 45.0%
GGACCAGATGAGCTATTGTT+TGG + chr4_4:59372177-59372196 Msa0691320:three_prime_UTR 45.0%
GGAATGGACGCGATTGGATT+TGG + chr4_4:59369603-59369622 Msa0691320:exon 50.0%
!!! GGAGTGGATTTTTCGGGTTC+TGG + chr4_4:59369625-59369644 Msa0691320:CDS 50.0%
GCGTCGGATTCGTTCGAATT+CGG + chr4_4:59369677-59369696 Msa0691320:CDS 50.0%
CGTCGGATTCGTTCGAATTC+GGG + chr4_4:59369678-59369697 Msa0691320:CDS 50.0%
ACCAGTAAGAGTAAGCGACG+CGG - chr4_4:59369763-59369782 None:intergenic 50.0%
GAGTGGTGAAAATGCCTCTC+AGG + chr4_4:59369827-59369846 Msa0691320:CDS 50.0%
CTTGAGGTCTGTCATGACTC+TGG + chr4_4:59369931-59369950 Msa0691320:intron 50.0%
GCTCTGCGAATGACTTCCTA+TGG + chr4_4:59370175-59370194 Msa0691320:CDS 50.0%
! GGATTCCTTTTCTATGGCCC+TGG + chr4_4:59370196-59370215 Msa0691320:CDS 50.0%
GGTACCAGGCAAAAGAACCA+GGG - chr4_4:59370216-59370235 None:intergenic 50.0%
TGGTACCAGGCAAAAGAACC+AGG - chr4_4:59370217-59370236 None:intergenic 50.0%
ATGGTCAAGCAACTGGTACC+AGG - chr4_4:59370230-59370249 None:intergenic 50.0%
GGAGACAATGGTCAAGCAAC+TGG - chr4_4:59370237-59370256 None:intergenic 50.0%
! GTTGGGTCCATGTGTCATTG+CGG + chr4_4:59370423-59370442 Msa0691320:CDS 50.0%
TGCGGGTGTTCAACCAAAAC+TGG - chr4_4:59371409-59371428 None:intergenic 50.0%
GGAAAGACCGGAAACATGCT+GGG + chr4_4:59372058-59372077 Msa0691320:three_prime_UTR 50.0%
! CATGCTGGGAGGCAGTTTTT+AGG + chr4_4:59372072-59372091 Msa0691320:three_prime_UTR 50.0%
GACGCGATTGGATTTGGGAG+TGG + chr4_4:59369609-59369628 Msa0691320:CDS 55.0%
ACCCGAAACCGGATTCTCGA+CGG + chr4_4:59369655-59369674 Msa0691320:CDS 55.0%
! CGTTCGAATTCGGGTTCACC+TGG + chr4_4:59369687-59369706 Msa0691320:CDS 55.0%
AGTAAGAGTAAGCGACGCGG+CGG - chr4_4:59369760-59369779 None:intergenic 55.0%
CGATTGCTCAGCTCAGTAGC+CGG + chr4_4:59369787-59369806 Msa0691320:CDS 55.0%
! CTGGTGCGTTTTCGTGTTCG+AGG + chr4_4:59369950-59369969 Msa0691320:intron 55.0%
!! ATGGCCCTGGTTCTTTTGCC+TGG + chr4_4:59370209-59370228 Msa0691320:CDS 55.0%
AAAGCCACTCTGGCTGGAAG+AGG - chr4_4:59371643-59371662 None:intergenic 55.0%
GACATGAAAGCCACTCTGGC+TGG - chr4_4:59371649-59371668 None:intergenic 55.0%
CGGAAAGACCGGAAACATGC+TGG + chr4_4:59372057-59372076 Msa0691320:three_prime_UTR 55.0%
AAGACCGGAAACATGCTGGG+AGG + chr4_4:59372061-59372080 Msa0691320:three_prime_UTR 55.0%
ACTGCCTCCCAGCATGTTTC+CGG - chr4_4:59372068-59372087 None:intergenic 55.0%
TGCGAGGGAATGGACGCGAT+TGG + chr4_4:59369597-59369616 Msa0691320:exon 60.0%
CTGGAAGTGGGACCCGAAAC+CGG + chr4_4:59369644-59369663 Msa0691320:CDS 60.0%
GCCGTCGAGAATCCGGTTTC+GGG - chr4_4:59369659-59369678 None:intergenic 60.0%
CGCCGTCGAGAATCCGGTTT+CGG - chr4_4:59369660-59369679 None:intergenic 60.0%
AACCGGATTCTCGACGGCGT+CGG + chr4_4:59369661-59369680 Msa0691320:CDS 60.0%
ATCCGACGCCGTCGAGAATC+CGG - chr4_4:59369666-59369685 None:intergenic 60.0%
CTGATAACCACCTCCGACGG+CGG - chr4_4:59369715-59369734 None:intergenic 60.0%
GCGGTTAACGCCTGCTTCAG+CGG - chr4_4:59369741-59369760 None:intergenic 60.0%
GCCGCGTCGCTTACTCTTAC+TGG + chr4_4:59369759-59369778 Msa0691320:CDS 60.0%
TTGCTCAGCTCAGTAGCCGG+TGG + chr4_4:59369790-59369809 Msa0691320:CDS 60.0%
GGTTCACCTGGTTCCGCCGT+CGG + chr4_4:59369699-59369718 Msa0691320:CDS 65.0%
GGTGCCTCTTCCAGCCAGAG+TGG + chr4_4:59371636-59371655 Msa0691320:CDS 65.0%
TCACCTGGTTCCGCCGTCGG+AGG + chr4_4:59369702-59369721 Msa0691320:CDS 70.0%
CCACCTCCGACGGCGGAACC+AGG - chr4_4:59369708-59369727 None:intergenic 75.0%
CCTGGTTCCGCCGTCGGAGG+TGG + chr4_4:59369705-59369724 Msa0691320:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 59369353 59372328 59369353 ID=Msa0691320;Name=Msa0691320
chr4_4 mRNA 59369353 59372328 59369353 ID=Msa0691320-mRNA-1;Parent=Msa0691320;Name=Msa0691320-mRNA-1;_AED=0.07;_eAED=0.07;_QI=253|1|1|1|0.6|0.5|6|528|219
chr4_4 exon 59369353 59369848 59369353 ID=Msa0691320-mRNA-1:exon:16099;Parent=Msa0691320-mRNA-1
chr4_4 exon 59370133 59370288 59370133 ID=Msa0691320-mRNA-1:exon:16100;Parent=Msa0691320-mRNA-1
chr4_4 exon 59370403 59370535 59370403 ID=Msa0691320-mRNA-1:exon:16101;Parent=Msa0691320-mRNA-1
chr4_4 exon 59370622 59370661 59370622 ID=Msa0691320-mRNA-1:exon:16102;Parent=Msa0691320-mRNA-1
chr4_4 exon 59371633 59371773 59371633 ID=Msa0691320-mRNA-1:exon:16103;Parent=Msa0691320-mRNA-1
chr4_4 exon 59371854 59372328 59371854 ID=Msa0691320-mRNA-1:exon:16104;Parent=Msa0691320-mRNA-1
chr4_4 five_prime_UTR 59369353 59369605 59369353 ID=Msa0691320-mRNA-1:five_prime_utr;Parent=Msa0691320-mRNA-1
chr4_4 CDS 59369606 59369848 59369606 ID=Msa0691320-mRNA-1:cds;Parent=Msa0691320-mRNA-1
chr4_4 CDS 59370133 59370288 59370133 ID=Msa0691320-mRNA-1:cds;Parent=Msa0691320-mRNA-1
chr4_4 CDS 59370403 59370535 59370403 ID=Msa0691320-mRNA-1:cds;Parent=Msa0691320-mRNA-1
chr4_4 CDS 59370622 59370661 59370622 ID=Msa0691320-mRNA-1:cds;Parent=Msa0691320-mRNA-1
chr4_4 CDS 59371633 59371720 59371633 ID=Msa0691320-mRNA-1:cds;Parent=Msa0691320-mRNA-1
chr4_4 three_prime_UTR 59371721 59371773 59371721 ID=Msa0691320-mRNA-1:three_prime_utr;Parent=Msa0691320-mRNA-1
chr4_4 three_prime_UTR 59371854 59372328 59371854 ID=Msa0691320-mRNA-1:three_prime_utr;Parent=Msa0691320-mRNA-1
Gene Sequence

>Msa0691320

ATGGACGCGATTGGATTTGGGAGTGGATTTTTCGGGTTCTGGAAGTGGGACCCGAAACCGGATTCTCGACGGCGTCGGATTCGTTCGAATTCGGGTTCACCTGGTTCCGCCGTCGGAGGTGGTTATCAGTTTCCGCTGAAGCAGGCGTTAACCGCCGCGTCGCTTACTCTTACTGGTGACACGATTGCTCAGCTCAGTAGCCGGTGGAACAAAGCTAAAGAGAGTGGTGAAAATGCCTCTCAGGATGTATTGTCGAAGCTTCTTTCAGAACACGATTTGCTACGTGCTCTGCGAATGACTTCCTATGGATTCCTTTTCTATGGCCCTGGTTCTTTTGCCTGGTACCAGTTGCTTGACCATTGTCTCCCAAAGCCAAATGTCCAGAACCTAATGTTAAAGGTTTTACTAAACCAAATTGTGTTGGGTCCATGTGTCATTGCGGTTATCTTTGCATGGAACAATTTATGGCAACAAAAGCTTTCAGAGCTTCCGGAAAAATACAAAAGAGATGCTCTTCCCACTTTACTTTATGGTTTTAGATTCTGGATCCCTGTCAGTGTATTAAATTTCTGGGTGGTGCCTCTTCCAGCCAGAGTGGCTTTCATGTCAATGGGCTCAATATTTTGGAATTTTTACCTATCATCAACTATGAACAAGTAA

Protein sequence

>Msa0691320

MDAIGFGSGFFGFWKWDPKPDSRRRRIRSNSGSPGSAVGGGYQFPLKQALTAASLTLTGDTIAQLSSRWNKAKESGENASQDVLSKLLSEHDLLRALRMTSYGFLFYGPGSFAWYQLLDHCLPKPNVQNLMLKVLLNQIVLGPCVIAVIFAWNNLWQQKLSELPEKYKRDALPTLLYGFRFWIPVSVLNFWVVPLPARVAFMSMGSIFWNFYLSSTMNK*