AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0608250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608250 MtrunA17_Chr4g0040451 96.804 219 7 0 20 238 1 219 4.18e-159 439
Msa0608250 MtrunA17_Chr6g0465041 29.932 147 97 2 98 238 77 223 2.82e-16 75.1
Msa0608250 MtrunA17_Chr1g0207521 24.823 141 105 1 94 233 107 247 6.33e-13 66.2
Msa0608250 MtrunA17_Chr7g0255351 28.415 183 112 3 56 238 92 255 7.49e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608250 AT2G42770.1 72.283 184 48 1 58 238 49 232 2.06e-95 279
Msa0608250 AT5G43140.1 29.452 146 102 1 94 238 104 249 1.16e-17 79.7
Msa0608250 AT4G33905.1 29.078 141 99 1 94 233 108 248 4.84e-15 72.8
Msa0608250 AT2G14860.1 26.027 146 106 2 95 238 99 244 1.01e-12 66.2

Find 94 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTTCCCACTTTACTTTA+TGG 0.111803 4_2:+55256333 Msa0608250:CDS
TCTTTGCATGGAACAATTTA+TGG 0.112525 4_2:+55256268 Msa0608250:CDS
TGTCAATGGGCTCAATATTT+TGG 0.126119 4_2:+55257484 Msa0608250:CDS
CTGTCAGTGTATTAAATTTC+TGG 0.134675 4_2:+55256459 Msa0608250:CDS
TTCCAATTAAGACTTATATT+TGG 0.167204 4_2:+55257810 Msa0608250:three_prime_UTR
TTGGGGAATTGAAGAAAATT+TGG 0.189452 4_2:+55255199 Msa0608250:five_prime_UTR
CACATGGACCCAACACAATT+TGG 0.192502 4_2:-55256233 None:intergenic
TCCCAAATATAAGTCTTAAT+TGG 0.200883 4_2:-55257812 None:intergenic
AACATTGCATGTGCTTAAAA+AGG 0.248373 4_2:+55257975 Msa0608250:three_prime_UTR
ATAATTTGAGTACATTATTA+TGG 0.248665 4_2:+55257834 Msa0608250:three_prime_UTR
TTGATGGAAATTCTTACTTT+TGG 0.263005 4_2:-55258056 None:intergenic
CGGAGGTGGTTATCAATTTC+CGG 0.267442 4_2:+55255531 Msa0608250:CDS
ACTGCCTCCCAGCATGTTTC+CGG 0.270902 4_2:-55257884 None:intergenic
CGCCGTCGAGAATCCGGTTT+CGG 0.272446 4_2:-55255469 None:intergenic
TGTCCAGAACCTAATGTTAA+AGG 0.277336 4_2:+55256083 Msa0608250:CDS
CGTCGGATTCGTTCGAATTC+GGG 0.285221 4_2:+55255490 Msa0608250:CDS
GGAATGGACGCGATTGGATT+TGG 0.285779 4_2:+55255415 Msa0608250:CDS
TCCAATTAAGACTTATATTT+GGG 0.294414 4_2:+55257811 Msa0608250:three_prime_UTR
GCGTCGGATTCGTTCGAATT+CGG 0.299605 4_2:+55255489 Msa0608250:CDS
GTTAATTGTTGATCTGATTT+CGG 0.300060 4_2:+55257856 Msa0608250:three_prime_UTR
AACATTAGGTTCTGGACATT+TGG 0.316911 4_2:-55256078 None:intergenic
GGTTCTGGACATTTGGCTTT+GGG 0.347006 4_2:-55256071 None:intergenic
GCAGCGTCGCTTACTCTTAC+TGG 0.348652 4_2:+55255571 Msa0608250:CDS
GCCGTCGAGAATCCGGTTTC+GGG 0.360252 4_2:-55255468 None:intergenic
ACAAAAGCTTTCAGAGCTTC+CGG 0.364498 4_2:+55256293 Msa0608250:CDS
ACTTGTTCATAGTTGATGAT+AGG 0.367450 4_2:-55257515 None:intergenic
GAATGGACGCGATTGGATTT+GGG 0.369109 4_2:+55255416 Msa0608250:CDS
CTGATTCTGATGACTCAATT+GGG 0.375545 4_2:+55255181 Msa0608250:five_prime_UTR
AGGTTCTGGACATTTGGCTT+TGG 0.375932 4_2:-55256072 None:intergenic
AACATAATACCTTTAACATT+AGG 0.377053 4_2:-55256092 None:intergenic
GGACCAGATGAACTATTGTT+TGG 0.386868 4_2:+55257996 Msa0608250:three_prime_UTR
ACTGATTCTGATGACTCAAT+TGG 0.389711 4_2:+55255180 Msa0608250:five_prime_UTR
CGTTCGAATTCGGGTTCACC+TGG 0.399031 4_2:+55255499 Msa0608250:CDS
CAGAGTGGCTTTCATGTCAA+TGG 0.403097 4_2:+55257470 Msa0608250:CDS
TAATAGAGAGATTATTATAT+AGG 0.404073 4_2:+55257779 Msa0608250:three_prime_UTR
ATACCTTTAACATTAGGTTC+TGG 0.414480 4_2:-55256086 None:intergenic
GGGTATGTTACAATACTTGT+TGG 0.424655 4_2:+55257935 Msa0608250:three_prime_UTR
TAACCAAACAATAGTTCATC+TGG 0.426023 4_2:-55257999 None:intergenic
TGTCACCCTTGGAATGATCT+TGG 0.428502 4_2:+55257914 Msa0608250:three_prime_UTR
ATCCGACGCCGTCGAGAATC+CGG 0.443852 4_2:-55255475 None:intergenic
CCTGGTTCCGCCGTCGGAGG+TGG 0.446747 4_2:+55255517 Msa0608250:CDS
TTACTAAACCAAATTGTGTT+GGG 0.447561 4_2:+55256225 Msa0608250:CDS
CAGAAATTTAATACACTGAC+AGG 0.448515 4_2:-55256458 None:intergenic
GGAGACAATGGTCAAGCAAC+TGG 0.451380 4_2:-55256050 None:intergenic
TTGTGGTTTAGAATTGTTAA+CGG 0.452285 4_2:+55255225 Msa0608250:five_prime_UTR
CGGAAAGACCGGAAACATGC+TGG 0.458895 4_2:+55257876 Msa0608250:three_prime_UTR
TGTGTTGTCGAAGCTTCTTT+CGG 0.461581 4_2:+55255951 Msa0608250:CDS
TCTCTTTAGCTTTGTTCCAC+CGG 0.468029 4_2:-55255618 None:intergenic
GACATGAAAGCCACTCTGGC+TGG 0.468430 4_2:-55257465 None:intergenic
CATTGACATGAAAGCCACTC+TGG 0.472403 4_2:-55257469 None:intergenic
CTGGAAGTGGGACCCGAAAC+CGG 0.475595 4_2:+55255456 Msa0608250:CDS
GCAGTTAACGCCTGCTTCAC+CGG 0.476584 4_2:-55255550 None:intergenic
GAGTGGTGAAAATGCCTCTC+AGG 0.482368 4_2:+55255639 Msa0608250:CDS
GTCACCCTTGGAATGATCTT+GGG 0.482479 4_2:+55257915 Msa0608250:three_prime_UTR
GGTTCACCTGGTTCCGCCGT+CGG 0.491942 4_2:+55255511 Msa0608250:CDS
TTTACTAAACCAAATTGTGT+TGG 0.492300 4_2:+55256224 Msa0608250:CDS
GACGCGATTGGATTTGGGAG+TGG 0.493904 4_2:+55255421 Msa0608250:CDS
GCTCTGCGAATGACTTCCTA+TGG 0.499911 4_2:+55255991 Msa0608250:CDS
TGAAGAAAATTTGGTGCTTG+TGG 0.504789 4_2:+55255208 Msa0608250:five_prime_UTR
TTATCAATTTCCGGTGAAGC+AGG 0.505270 4_2:+55255540 Msa0608250:CDS
TGATCTGATTTCGGAAAGAC+CGG 0.506115 4_2:+55257865 Msa0608250:three_prime_UTR
AAGAACCAGGGCCATAGAAA+AGG 0.506838 4_2:-55256017 None:intergenic
TGGTACCAGGCAAAAGAACC+AGG 0.517678 4_2:-55256030 None:intergenic
AGAGTGGCTTTCATGTCAAT+GGG 0.522920 4_2:+55257471 Msa0608250:CDS
CCACCTCCGACGGCGGAACC+AGG 0.528246 4_2:-55255517 None:intergenic
TTGATAACCACCTCCGACGG+CGG 0.529049 4_2:-55255524 None:intergenic
TTTGTACCATAAAGTAAAGT+GGG 0.532650 4_2:-55256339 None:intergenic
AAAGCCACTCTGGCTGGAAG+AGG 0.533546 4_2:-55257459 None:intergenic
GTTTGTACCATAAAGTAAAG+TGG 0.534203 4_2:-55256340 None:intergenic
CATTTGGCTTTGGGAGACAA+TGG 0.544393 4_2:-55256062 None:intergenic
GGTGCCTCTTCCAGCCAGAG+TGG 0.561435 4_2:+55257455 Msa0608250:CDS
TCATTGCGGTTATCTTTGCA+TGG 0.564794 4_2:+55256256 Msa0608250:CDS
TGTTTGAAATTCTTACAATG+AGG 0.567069 4_2:+55257571 Msa0608250:three_prime_UTR
ATGGTCAAGCAACTGGTACC+AGG 0.567339 4_2:-55256043 None:intergenic
TCACCTGGTTCCGCCGTCGG+AGG 0.567431 4_2:+55255514 Msa0608250:CDS
AACCGGATTCTCGACGGCGT+CGG 0.567671 4_2:+55255473 Msa0608250:CDS
CGATTGCTCAGCTCAGTAGC+CGG 0.572476 4_2:+55255599 Msa0608250:CDS
TGCGAGGGAATGGACGCGAT+TGG 0.572598 4_2:+55255409 Msa0608250:CDS
GGAAAGACCGGAAACATGCT+GGG 0.587992 4_2:+55257877 Msa0608250:three_prime_UTR
ACCCGAAACCGGATTCTCGA+CGG 0.607175 4_2:+55255467 Msa0608250:CDS
AAGATAACCGCAATGACACA+TGG 0.607959 4_2:-55256249 None:intergenic
ACATACCCAAGATCATTCCA+AGG 0.616284 4_2:-55257920 None:intergenic
TGATTCTGATGACTCAATTG+GGG 0.626805 4_2:+55255182 Msa0608250:five_prime_UTR
GCCATAGAAAAGGAATCCAT+AGG 0.637264 4_2:-55256007 None:intergenic
ATTTGACACTCTGAAAGCTG+TGG 0.644992 4_2:+55257703 Msa0608250:three_prime_UTR
AAATTGATAACCACCTCCGA+CGG 0.647936 4_2:-55255527 None:intergenic
TTGCTCAGCTCAGTAGCCGG+TGG 0.657176 4_2:+55255602 Msa0608250:CDS
TGGAACAAAGCTAAAGAGAG+TGG 0.660771 4_2:+55255622 Msa0608250:CDS
GTTGGGTCCATGTGTCATTG+CGG 0.690123 4_2:+55256242 Msa0608250:CDS
CAATATTTCACTAACCTGAG+AGG 0.702533 4_2:-55255653 None:intergenic
CATACCCAAGATCATTCCAA+GGG 0.703159 4_2:-55257919 None:intergenic
AGAAATTTAATACACTGACA+GGG 0.717165 4_2:-55256457 None:intergenic
GGTACCAGGCAAAAGAACCA+GGG 0.724550 4_2:-55256029 None:intergenic
AAGACCGGAAACATGCTGGG+AGG 0.755788 4_2:+55257880 Msa0608250:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATAAAAATCGAATTTTTA+TGG - chr4_2:55255254-55255273 None:intergenic 10.0%
!!! TAAAATATAGTATATTGATT+AGG - chr4_2:55256966-55256985 None:intergenic 10.0%
!!! ACAAAATAAGCTTATTTTTT+AGG + chr4_2:55255812-55255831 Msa0608250:intron 15.0%
!! TATGAAATATTAACCAAAAA+AGG + chr4_2:55255917-55255936 Msa0608250:intron 15.0%
!! ATATGTGTGTTTATATAAAA+CGG - chr4_2:55256584-55256603 None:intergenic 15.0%
!! TTTAAGAAAATAGAAGTAAT+TGG + chr4_2:55257187-55257206 Msa0608250:intron 15.0%
!! TAATAGAGAGATTATTATAT+AGG + chr4_2:55257779-55257798 Msa0608250:three_prime_UTR 15.0%
!! ATAATTTGAGTACATTATTA+TGG + chr4_2:55257834-55257853 Msa0608250:three_prime_UTR 15.0%
!!! TTTTAGTTAATTACATTTGA+TGG - chr4_2:55258075-55258094 None:intergenic 15.0%
!! AACATAATACCTTTAACATT+AGG - chr4_2:55256095-55256114 None:intergenic 20.0%
!! TAAGAAAAAGTTGCATATAT+AGG - chr4_2:55256657-55256676 None:intergenic 20.0%
!!! TAAGTAATATAAGTGTCATT+TGG + chr4_2:55256910-55256929 Msa0608250:intron 20.0%
!!! TTCCACTTTTATAATTTGTT+TGG + chr4_2:55257618-55257637 Msa0608250:intron 20.0%
!! GTTAATTAATCTACAAATAC+AGG - chr4_2:55257663-55257682 None:intergenic 20.0%
!! TTCCAATTAAGACTTATATT+TGG + chr4_2:55257810-55257829 Msa0608250:three_prime_UTR 20.0%
!! TCCAATTAAGACTTATATTT+GGG + chr4_2:55257811-55257830 Msa0608250:three_prime_UTR 20.0%
!! TTGTGGTTTAGAATTGTTAA+CGG + chr4_2:55255225-55255244 Msa0608250:five_prime_UTR 25.0%
! ATATTGTAAGCATCTCTATT+AGG + chr4_2:55255709-55255728 Msa0608250:intron 25.0%
! TATTGTAAGCATCTCTATTA+GGG + chr4_2:55255710-55255729 Msa0608250:intron 25.0%
! TATATTGTTGTGTTATCTAG+TGG + chr4_2:55255875-55255894 Msa0608250:intron 25.0%
! TAACCAAAAAAGGTTTCTTT+AGG + chr4_2:55255927-55255946 Msa0608250:intron 25.0%
! TTTACTAAACCAAATTGTGT+TGG + chr4_2:55256224-55256243 Msa0608250:CDS 25.0%
! TTACTAAACCAAATTGTGTT+GGG + chr4_2:55256225-55256244 Msa0608250:CDS 25.0%
! TTTGTACCATAAAGTAAAGT+GGG - chr4_2:55256342-55256361 None:intergenic 25.0%
! AGAAATTTAATACACTGACA+GGG - chr4_2:55256460-55256479 None:intergenic 25.0%
!! TAGATTATACCTTTTCACTA+GGG - chr4_2:55256633-55256652 None:intergenic 25.0%
! AACTGCAACTATAAGATAAA+GGG - chr4_2:55256812-55256831 None:intergenic 25.0%
! AAACTGCAACTATAAGATAA+AGG - chr4_2:55256813-55256832 None:intergenic 25.0%
! AAATCTTGAAGTTAAGCAAT+TGG - chr4_2:55256877-55256896 None:intergenic 25.0%
! TCCATATTAAGAAAATTAGG+CGG - chr4_2:55257063-55257082 None:intergenic 25.0%
! TCGTCCATATTAAGAAAATT+AGG - chr4_2:55257066-55257085 None:intergenic 25.0%
! TGTAGGTATAAATAGCTATT+AGG + chr4_2:55257292-55257311 Msa0608250:intron 25.0%
! GTAGGTATAAATAGCTATTA+GGG + chr4_2:55257293-55257312 Msa0608250:intron 25.0%
! CATACTTACTCTACTAATTA+AGG + chr4_2:55257334-55257353 Msa0608250:intron 25.0%
! TGATCATTCTACTAATTATC+TGG + chr4_2:55257360-55257379 Msa0608250:intron 25.0%
! ACTAATTATCTGGTTATTTG+TGG + chr4_2:55257370-55257389 Msa0608250:intron 25.0%
!!! TATTTTTATGGCTCTGTATA+GGG + chr4_2:55257431-55257450 Msa0608250:intron 25.0%
!! TGTTTGAAATTCTTACAATG+AGG + chr4_2:55257571-55257590 Msa0608250:three_prime_UTR 25.0%
! AGCCAAACAAATTATAAAAG+TGG - chr4_2:55257623-55257642 None:intergenic 25.0%
! AATCTACAAATACAGGATAA+TGG - chr4_2:55257656-55257675 None:intergenic 25.0%
! TCCCAAATATAAGTCTTAAT+TGG - chr4_2:55257815-55257834 None:intergenic 25.0%
! GTTAATTGTTGATCTGATTT+CGG + chr4_2:55257856-55257875 Msa0608250:three_prime_UTR 25.0%
!!! TACTTTTGGAATTAACCAAT+TGG - chr4_2:55258045-55258064 None:intergenic 25.0%
!! TTGATGGAAATTCTTACTTT+TGG - chr4_2:55258059-55258078 None:intergenic 25.0%
TTGGGGAATTGAAGAAAATT+TGG + chr4_2:55255199-55255218 Msa0608250:five_prime_UTR 30.0%
TTATCTAGTGGTGAATACTT+TGG + chr4_2:55255887-55255906 Msa0608250:intron 30.0%
!!! CATCCTAAAGAAACCTTTTT+TGG - chr4_2:55255933-55255952 None:intergenic 30.0%
ATACCTTTAACATTAGGTTC+TGG - chr4_2:55256089-55256108 None:intergenic 30.0%
! CATCTATAAATGATGATGTC+TGG + chr4_2:55256116-55256135 Msa0608250:intron 30.0%
! GTTTAATTAACAGAAGCATG+AGG + chr4_2:55256138-55256157 Msa0608250:intron 30.0%
!!! TTTTTTATCGTTTCGTTGAC+AGG + chr4_2:55256200-55256219 Msa0608250:intron 30.0%
TCTTTGCATGGAACAATTTA+TGG + chr4_2:55256268-55256287 Msa0608250:CDS 30.0%
! GCATCTCTTTTGTATTTTTC+CGG - chr4_2:55256315-55256334 None:intergenic 30.0%
GTTTGTACCATAAAGTAAAG+TGG - chr4_2:55256343-55256362 None:intergenic 30.0%
AGTAAGTCACAATAACACTT+GGG - chr4_2:55256373-55256392 None:intergenic 30.0%
AACAGACAAATTACACAGAA+AGG - chr4_2:55256418-55256437 None:intergenic 30.0%
CAGAAATTTAATACACTGAC+AGG - chr4_2:55256461-55256480 None:intergenic 30.0%
CTGTCAGTGTATTAAATTTC+TGG + chr4_2:55256459-55256478 Msa0608250:CDS 30.0%
CAAGCAGAATATCAGATTTA+AGG - chr4_2:55256500-55256519 None:intergenic 30.0%
! CTAGATTATACCTTTTCACT+AGG - chr4_2:55256634-55256653 None:intergenic 30.0%
AAAAATGAACTAGCATGTCA+TGG - chr4_2:55256719-55256738 None:intergenic 30.0%
!!! GACATGCTAGTTCATTTTTT+AGG + chr4_2:55256720-55256739 Msa0608250:intron 30.0%
ACTGCAACTATAAGATAAAG+GGG - chr4_2:55256811-55256830 None:intergenic 30.0%
TTATAGTTGCAGTTTGCAAA+TGG + chr4_2:55256818-55256837 Msa0608250:intron 30.0%
! ACCGCCTAATTTTCTTAATA+TGG + chr4_2:55257059-55257078 Msa0608250:intron 30.0%
GTCTATAAGTATGGTTGTTA+GGG + chr4_2:55257102-55257121 Msa0608250:intron 30.0%
!!! TTGTTAGGGATTTTGTTGTT+TGG + chr4_2:55257116-55257135 Msa0608250:intron 30.0%
!!! TGTTAGGGATTTTGTTGTTT+GGG + chr4_2:55257117-55257136 Msa0608250:intron 30.0%
CTATACAGAGCCATAAAAAT+AGG - chr4_2:55257432-55257451 None:intergenic 30.0%
!!! CTATTTTTATGGCTCTGTAT+AGG + chr4_2:55257430-55257449 Msa0608250:intron 30.0%
!! ACTTGTTCATAGTTGATGAT+AGG - chr4_2:55257518-55257537 None:intergenic 30.0%
AACATTGCATGTGCTTAAAA+AGG + chr4_2:55257975-55257994 Msa0608250:three_prime_UTR 30.0%
TAACCAAACAATAGTTCATC+TGG - chr4_2:55258002-55258021 None:intergenic 30.0%
! ACTGATTCTGATGACTCAAT+TGG + chr4_2:55255180-55255199 Msa0608250:five_prime_UTR 35.0%
CTGATTCTGATGACTCAATT+GGG + chr4_2:55255181-55255200 Msa0608250:five_prime_UTR 35.0%
TGATTCTGATGACTCAATTG+GGG + chr4_2:55255182-55255201 Msa0608250:five_prime_UTR 35.0%
!! TGAAGAAAATTTGGTGCTTG+TGG + chr4_2:55255208-55255227 Msa0608250:five_prime_UTR 35.0%
CAATATTTCACTAACCTGAG+AGG - chr4_2:55255656-55255675 None:intergenic 35.0%
! TCCTATGGATTCCTTTTCTA+TGG + chr4_2:55256006-55256025 Msa0608250:CDS 35.0%
!! AACATTAGGTTCTGGACATT+TGG - chr4_2:55256081-55256100 None:intergenic 35.0%
TGTCCAGAACCTAATGTTAA+AGG + chr4_2:55256083-55256102 Msa0608250:CDS 35.0%
CAGTAAGTCACAATAACACT+TGG - chr4_2:55256374-55256393 None:intergenic 35.0%
! TCTGTGTAATTTGTCTGTTC+AGG + chr4_2:55256419-55256438 Msa0608250:intron 35.0%
!!! TCTGTTCAGGTTTTAGATTC+TGG + chr4_2:55256432-55256451 Msa0608250:intron 35.0%
AATTCACTTCCCTAGTGAAA+AGG + chr4_2:55256621-55256640 Msa0608250:intron 35.0%
!!! TGTCTTGCATTTTAGAGTGA+GGG + chr4_2:55256841-55256860 Msa0608250:intron 35.0%
ACAGCAAAGGTCTATAAGTA+TGG + chr4_2:55257093-55257112 Msa0608250:intron 35.0%
GGTCTATAAGTATGGTTGTT+AGG + chr4_2:55257101-55257120 Msa0608250:intron 35.0%
!!! ACCTTCCTTGCCTATTTTTA+TGG + chr4_2:55257419-55257438 Msa0608250:intron 35.0%
!! TGTCAATGGGCTCAATATTT+TGG + chr4_2:55257484-55257503 Msa0608250:CDS 35.0%
!! AGAGTGTCAAATCTTTTGCA+GGG - chr4_2:55257695-55257714 None:intergenic 35.0%
GGGTATGTTACAATACTTGT+TGG + chr4_2:55257935-55257954 Msa0608250:three_prime_UTR 35.0%
! TTCAGCTTTTTGCAACCAAT+TGG + chr4_2:55258027-55258046 Msa0608250:three_prime_UTR 35.0%
!! GGATTTGGGAGTGGATTTTT+CGG + chr4_2:55255430-55255449 Msa0608250:CDS 40.0%
!! GATTTGGGAGTGGATTTTTC+GGG + chr4_2:55255431-55255450 Msa0608250:CDS 40.0%
!!! ATTTTTCGGGTTCTGGAAGT+GGG + chr4_2:55255444-55255463 Msa0608250:CDS 40.0%
! AAATTGATAACCACCTCCGA+CGG - chr4_2:55255530-55255549 None:intergenic 40.0%
TTATCAATTTCCGGTGAAGC+AGG + chr4_2:55255540-55255559 Msa0608250:CDS 40.0%
!! TCTCTTTAGCTTTGTTCCAC+CGG - chr4_2:55255621-55255640 None:intergenic 40.0%
TGGAACAAAGCTAAAGAGAG+TGG + chr4_2:55255622-55255641 Msa0608250:CDS 40.0%
CAAAGAACACACATTTCAGC+TGG - chr4_2:55255792-55255811 None:intergenic 40.0%
!! GTGGTGAATACTTTGGAGTT+TGG + chr4_2:55255894-55255913 Msa0608250:intron 40.0%
TGTGTTGTCGAAGCTTCTTT+CGG + chr4_2:55255951-55255970 Msa0608250:CDS 40.0%
GCCATAGAAAAGGAATCCAT+AGG - chr4_2:55256010-55256029 None:intergenic 40.0%
AAGATAACCGCAATGACACA+TGG - chr4_2:55256252-55256271 None:intergenic 40.0%
TCATTGCGGTTATCTTTGCA+TGG + chr4_2:55256256-55256275 Msa0608250:CDS 40.0%
ACAAAAGCTTTCAGAGCTTC+CGG + chr4_2:55256293-55256312 Msa0608250:CDS 40.0%
GCTCTTCCCACTTTACTTTA+TGG + chr4_2:55256333-55256352 Msa0608250:CDS 40.0%
ACAATAACACTTGGGCAATG+AGG - chr4_2:55256365-55256384 None:intergenic 40.0%
GTGAGTATCTTGTATCGAGT+TGG + chr4_2:55256769-55256788 Msa0608250:intron 40.0%
!!! GTGTCTTGCATTTTAGAGTG+AGG + chr4_2:55256840-55256859 Msa0608250:intron 40.0%
!!! GTCTTGCATTTTAGAGTGAG+GGG + chr4_2:55256842-55256861 Msa0608250:intron 40.0%
!!! TCTTGCATTTTAGAGTGAGG+GGG + chr4_2:55256843-55256862 Msa0608250:intron 40.0%
GTGCCTTCAATAAGAAGTCT+CGG + chr4_2:55257249-55257268 Msa0608250:intron 40.0%
TACATCGCTTGTGATCATGT+AGG + chr4_2:55257275-55257294 Msa0608250:intron 40.0%
GCCATAAAAATAGGCAAGGA+AGG - chr4_2:55257423-55257442 None:intergenic 40.0%
CAGAGCCATAAAAATAGGCA+AGG - chr4_2:55257427-55257446 None:intergenic 40.0%
!! TTTTATGGCTCTGTATAGGG+TGG + chr4_2:55257434-55257453 Msa0608250:intron 40.0%
AGAGTGGCTTTCATGTCAAT+GGG + chr4_2:55257471-55257490 Msa0608250:CDS 40.0%
!! CAGAGTGTCAAATCTTTTGC+AGG - chr4_2:55257696-55257715 None:intergenic 40.0%
! ATTTGACACTCTGAAAGCTG+TGG + chr4_2:55257703-55257722 Msa0608250:three_prime_UTR 40.0%
TGATCTGATTTCGGAAAGAC+CGG + chr4_2:55257865-55257884 Msa0608250:three_prime_UTR 40.0%
CATACCCAAGATCATTCCAA+GGG - chr4_2:55257922-55257941 None:intergenic 40.0%
ACATACCCAAGATCATTCCA+AGG - chr4_2:55257923-55257942 None:intergenic 40.0%
GGACCAGATGAACTATTGTT+TGG + chr4_2:55257996-55258015 Msa0608250:three_prime_UTR 40.0%
! AGCACAAAACGCTGCGTTTT+TGG + chr4_2:55255331-55255350 Msa0608250:five_prime_UTR 45.0%
!! TGCGTATTTTTGTGTGTGCG+AGG + chr4_2:55255393-55255412 Msa0608250:CDS 45.0%
!! GCGTATTTTTGTGTGTGCGA+GGG + chr4_2:55255394-55255413 Msa0608250:CDS 45.0%
! TTTTTGTGTGTGCGAGGGAA+TGG + chr4_2:55255399-55255418 Msa0608250:CDS 45.0%
GAATGGACGCGATTGGATTT+GGG + chr4_2:55255416-55255435 Msa0608250:CDS 45.0%
!!! GATTTTTCGGGTTCTGGAAG+TGG + chr4_2:55255443-55255462 Msa0608250:CDS 45.0%
CGGAGGTGGTTATCAATTTC+CGG + chr4_2:55255531-55255550 Msa0608250:CDS 45.0%
TTAGGGCTCTGTGAATCTTG+AGG + chr4_2:55255727-55255746 Msa0608250:intron 45.0%
ACATTTCAGCTGGACGTGTT+AGG - chr4_2:55255782-55255801 None:intergenic 45.0%
AAGAACCAGGGCCATAGAAA+AGG - chr4_2:55256020-55256039 None:intergenic 45.0%
!! CATTTGGCTTTGGGAGACAA+TGG - chr4_2:55256065-55256084 None:intergenic 45.0%
!! GGTTCTGGACATTTGGCTTT+GGG - chr4_2:55256074-55256093 None:intergenic 45.0%
!! AGGTTCTGGACATTTGGCTT+TGG - chr4_2:55256075-55256094 None:intergenic 45.0%
! ACAGAAGCATGAGGCAGTTA+AGG + chr4_2:55256147-55256166 Msa0608250:intron 45.0%
CACATGGACCCAACACAATT+TGG - chr4_2:55256236-55256255 None:intergenic 45.0%
!!! CTTGCATTTTAGAGTGAGGG+GGG + chr4_2:55256844-55256863 Msa0608250:intron 45.0%
GGACGAAGTAGTAACAGCAA+AGG + chr4_2:55257080-55257099 Msa0608250:intron 45.0%
! GTAACTACGTACGCCAGTTT+TGG + chr4_2:55257212-55257231 Msa0608250:intron 45.0%
! TTCTTATTGAAGGCACGTGC+GGG - chr4_2:55257245-55257264 None:intergenic 45.0%
! CTTCTTATTGAAGGCACGTG+CGG - chr4_2:55257246-55257265 None:intergenic 45.0%
GCACCGAGACTTCTTATTGA+AGG - chr4_2:55257255-55257274 None:intergenic 45.0%
CATTGACATGAAAGCCACTC+TGG - chr4_2:55257472-55257491 None:intergenic 45.0%
CAGAGTGGCTTTCATGTCAA+TGG + chr4_2:55257470-55257489 Msa0608250:CDS 45.0%
!!! CAGTTTTTAGGTGTCACCCT+TGG + chr4_2:55257903-55257922 Msa0608250:three_prime_UTR 45.0%
TGTCACCCTTGGAATGATCT+TGG + chr4_2:55257914-55257933 Msa0608250:three_prime_UTR 45.0%
GTCACCCTTGGAATGATCTT+GGG + chr4_2:55257915-55257934 Msa0608250:three_prime_UTR 45.0%
!!! TTTTTTTTTTAATTTGAAAA+AGG + chr4_2:55255300-55255319 Msa0608250:five_prime_UTR 5.0%
GGAATGGACGCGATTGGATT+TGG + chr4_2:55255415-55255434 Msa0608250:CDS 50.0%
!!! GGAGTGGATTTTTCGGGTTC+TGG + chr4_2:55255437-55255456 Msa0608250:CDS 50.0%
GCGTCGGATTCGTTCGAATT+CGG + chr4_2:55255489-55255508 Msa0608250:CDS 50.0%
CGTCGGATTCGTTCGAATTC+GGG + chr4_2:55255490-55255509 Msa0608250:CDS 50.0%
GAGTGGTGAAAATGCCTCTC+AGG + chr4_2:55255639-55255658 Msa0608250:CDS 50.0%
CTTGAGGTCTGTCATGACTC+TGG + chr4_2:55255743-55255762 Msa0608250:intron 50.0%
! ATGACTCTGGTGCCTTTTCC+AGG + chr4_2:55255756-55255775 Msa0608250:intron 50.0%
GCTCTGCGAATGACTTCCTA+TGG + chr4_2:55255991-55256010 Msa0608250:CDS 50.0%
! GGATTCCTTTTCTATGGCCC+TGG + chr4_2:55256012-55256031 Msa0608250:CDS 50.0%
GGTACCAGGCAAAAGAACCA+GGG - chr4_2:55256032-55256051 None:intergenic 50.0%
TGGTACCAGGCAAAAGAACC+AGG - chr4_2:55256033-55256052 None:intergenic 50.0%
ATGGTCAAGCAACTGGTACC+AGG - chr4_2:55256046-55256065 None:intergenic 50.0%
GGAGACAATGGTCAAGCAAC+TGG - chr4_2:55256053-55256072 None:intergenic 50.0%
! GTTGGGTCCATGTGTCATTG+CGG + chr4_2:55256242-55256261 Msa0608250:CDS 50.0%
TGCGGGTGTTCAACCAAAAC+TGG - chr4_2:55257228-55257247 None:intergenic 50.0%
GGAAAGACCGGAAACATGCT+GGG + chr4_2:55257877-55257896 Msa0608250:three_prime_UTR 50.0%
! CATGCTGGGAGGCAGTTTTT+AGG + chr4_2:55257891-55257910 Msa0608250:three_prime_UTR 50.0%
GACGCGATTGGATTTGGGAG+TGG + chr4_2:55255421-55255440 Msa0608250:CDS 55.0%
ACCCGAAACCGGATTCTCGA+CGG + chr4_2:55255467-55255486 Msa0608250:CDS 55.0%
! CGTTCGAATTCGGGTTCACC+TGG + chr4_2:55255499-55255518 Msa0608250:CDS 55.0%
! TTGATAACCACCTCCGACGG+CGG - chr4_2:55255527-55255546 None:intergenic 55.0%
GCAGTTAACGCCTGCTTCAC+CGG - chr4_2:55255553-55255572 None:intergenic 55.0%
GCAGCGTCGCTTACTCTTAC+TGG + chr4_2:55255571-55255590 Msa0608250:CDS 55.0%
CGATTGCTCAGCTCAGTAGC+CGG + chr4_2:55255599-55255618 Msa0608250:CDS 55.0%
GGACGTGTTAGGCCTGGAAA+AGG - chr4_2:55255771-55255790 None:intergenic 55.0%
!! ATGGCCCTGGTTCTTTTGCC+TGG + chr4_2:55256025-55256044 Msa0608250:CDS 55.0%
AAAGCCACTCTGGCTGGAAG+AGG - chr4_2:55257462-55257481 None:intergenic 55.0%
GACATGAAAGCCACTCTGGC+TGG - chr4_2:55257468-55257487 None:intergenic 55.0%
CGGAAAGACCGGAAACATGC+TGG + chr4_2:55257876-55257895 Msa0608250:three_prime_UTR 55.0%
AAGACCGGAAACATGCTGGG+AGG + chr4_2:55257880-55257899 Msa0608250:three_prime_UTR 55.0%
ACTGCCTCCCAGCATGTTTC+CGG - chr4_2:55257887-55257906 None:intergenic 55.0%
TGCGAGGGAATGGACGCGAT+TGG + chr4_2:55255409-55255428 Msa0608250:CDS 60.0%
CTGGAAGTGGGACCCGAAAC+CGG + chr4_2:55255456-55255475 Msa0608250:CDS 60.0%
GCCGTCGAGAATCCGGTTTC+GGG - chr4_2:55255471-55255490 None:intergenic 60.0%
CGCCGTCGAGAATCCGGTTT+CGG - chr4_2:55255472-55255491 None:intergenic 60.0%
AACCGGATTCTCGACGGCGT+CGG + chr4_2:55255473-55255492 Msa0608250:CDS 60.0%
ATCCGACGCCGTCGAGAATC+CGG - chr4_2:55255478-55255497 None:intergenic 60.0%
TTGCTCAGCTCAGTAGCCGG+TGG + chr4_2:55255602-55255621 Msa0608250:CDS 60.0%
TCAGCTGGACGTGTTAGGCC+TGG - chr4_2:55255777-55255796 None:intergenic 60.0%
GGTTCACCTGGTTCCGCCGT+CGG + chr4_2:55255511-55255530 Msa0608250:CDS 65.0%
GGTGCCTCTTCCAGCCAGAG+TGG + chr4_2:55257455-55257474 Msa0608250:CDS 65.0%
TCACCTGGTTCCGCCGTCGG+AGG + chr4_2:55255514-55255533 Msa0608250:CDS 70.0%
CCACCTCCGACGGCGGAACC+AGG - chr4_2:55255520-55255539 None:intergenic 75.0%
CCTGGTTCCGCCGTCGGAGG+TGG + chr4_2:55255517-55255536 Msa0608250:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 55255159 55258147 55255159 ID=Msa0608250;Name=Msa0608250
chr4_2 mRNA 55255159 55258147 55255159 ID=Msa0608250-mRNA-1;Parent=Msa0608250;Name=Msa0608250-mRNA-1;_AED=0.07;_eAED=0.07;_QI=202|1|1|1|0.6|0.5|6|528|238
chr4_2 exon 55255159 55255660 55255159 ID=Msa0608250-mRNA-1:exon:13996;Parent=Msa0608250-mRNA-1
chr4_2 exon 55255949 55256104 55255949 ID=Msa0608250-mRNA-1:exon:13997;Parent=Msa0608250-mRNA-1
chr4_2 exon 55256222 55256354 55256222 ID=Msa0608250-mRNA-1:exon:13998;Parent=Msa0608250-mRNA-1
chr4_2 exon 55256441 55256480 55256441 ID=Msa0608250-mRNA-1:exon:13999;Parent=Msa0608250-mRNA-1
chr4_2 exon 55257452 55257592 55257452 ID=Msa0608250-mRNA-1:exon:14000;Parent=Msa0608250-mRNA-1
chr4_2 exon 55257673 55258147 55257673 ID=Msa0608250-mRNA-1:exon:14001;Parent=Msa0608250-mRNA-1
chr4_2 five_prime_UTR 55255159 55255360 55255159 ID=Msa0608250-mRNA-1:five_prime_utr;Parent=Msa0608250-mRNA-1
chr4_2 CDS 55255361 55255660 55255361 ID=Msa0608250-mRNA-1:cds;Parent=Msa0608250-mRNA-1
chr4_2 CDS 55255949 55256104 55255949 ID=Msa0608250-mRNA-1:cds;Parent=Msa0608250-mRNA-1
chr4_2 CDS 55256222 55256354 55256222 ID=Msa0608250-mRNA-1:cds;Parent=Msa0608250-mRNA-1
chr4_2 CDS 55256441 55256480 55256441 ID=Msa0608250-mRNA-1:cds;Parent=Msa0608250-mRNA-1
chr4_2 CDS 55257452 55257539 55257452 ID=Msa0608250-mRNA-1:cds;Parent=Msa0608250-mRNA-1
chr4_2 three_prime_UTR 55257540 55257592 55257540 ID=Msa0608250-mRNA-1:three_prime_utr;Parent=Msa0608250-mRNA-1
chr4_2 three_prime_UTR 55257673 55258147 55257673 ID=Msa0608250-mRNA-1:three_prime_utr;Parent=Msa0608250-mRNA-1
Gene Sequence

>Msa0608250

ATGTTTCAGACTCACTCACATAGCGAAAAAGTTGCGTATTTTTGTGTGTGCGAGGGAATGGACGCGATTGGATTTGGGAGTGGATTTTTCGGGTTCTGGAAGTGGGACCCGAAACCGGATTCTCGACGGCGTCGGATTCGTTCGAATTCGGGTTCACCTGGTTCCGCCGTCGGAGGTGGTTATCAATTTCCGGTGAAGCAGGCGTTAACTGCAGCGTCGCTTACTCTTACTGGTGATACGATTGCTCAGCTCAGTAGCCGGTGGAACAAAGCTAAAGAGAGTGGTGAAAATGCCTCTCAGGATGTGTTGTCGAAGCTTCTTTCGGAACACGATTTGCTACGTGCTCTGCGAATGACTTCCTATGGATTCCTTTTCTATGGCCCTGGTTCTTTTGCCTGGTACCAGTTGCTTGACCATTGTCTCCCAAAGCCAAATGTCCAGAACCTAATGTTAAAGGTTTTACTAAACCAAATTGTGTTGGGTCCATGTGTCATTGCGGTTATCTTTGCATGGAACAATTTATGGCAACAAAAGCTTTCAGAGCTTCCGGAAAAATACAAAAGAGATGCTCTTCCCACTTTACTTTATGGTTTTAGATTCTGGATCCCTGTCAGTGTATTAAATTTCTGGGTGGTGCCTCTTCCAGCCAGAGTGGCTTTCATGTCAATGGGCTCAATATTTTGGAATTTTTACCTATCATCAACTATGAACAAGTAA

Protein sequence

>Msa0608250

MFQTHSHSEKVAYFCVCEGMDAIGFGSGFFGFWKWDPKPDSRRRRIRSNSGSPGSAVGGGYQFPVKQALTAASLTLTGDTIAQLSSRWNKAKESGENASQDVLSKLLSEHDLLRALRMTSYGFLFYGPGSFAWYQLLDHCLPKPNVQNLMLKVLLNQIVLGPCVIAVIFAWNNLWQQKLSELPEKYKRDALPTLLYGFRFWIPVSVLNFWVVPLPARVAFMSMGSIFWNFYLSSTMNK*