AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0252150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0252150 MtrunA17_Chr2g0310601 99.374 479 3 0 1 479 1 479 0.0 939
Msa0252150 MtrunA17_Chr2g0310611 88.089 403 47 1 73 474 89 491 0.0 702
Msa0252150 MtrunA17_Chr2g0310621 85.678 398 57 0 77 474 4 401 0.0 686
Msa0252150 MtrunA17_Chr6g0457691 30.198 404 272 5 78 479 142 537 8.62e-49 178
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0252150 AT1G56190.1 87.472 439 54 1 42 479 40 478 0.0 775
Msa0252150 AT3G12780.1 82.438 484 77 4 1 479 1 481 0.0 763
Msa0252150 AT1G56190.2 90.123 405 40 0 75 479 1 405 0.0 738
Msa0252150 AT1G79550.1 86.181 398 55 0 77 474 4 401 0.0 697
Msa0252150 AT1G79550.2 86.181 398 55 0 77 474 4 401 0.0 697

Find 199 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAGATTTATTTGAATTTA+TGG 0.071022 2_2:+42855809 None:intergenic
AAGAGGTGCCAAGCTGTATT+TGG 0.198091 2_2:+42858213 None:intergenic
AGAACGATTGGGTGTGGTTT+GGG 0.198355 2_2:+42860057 None:intergenic
TGGGTGTGGTTTGGGGATTT+TGG 0.203943 2_2:+42860065 None:intergenic
TGACCCTTTGTTGGCGGTTC+AGG 0.260426 2_2:-42859777 Msa0252150:CDS
GGGGAGGAGTGAGATGGTTG+TGG 0.281250 2_2:+42859904 None:intergenic
CGCTGCAGCTGACCCTTTGT+TGG 0.296291 2_2:-42859786 Msa0252150:CDS
TTGAGTGGGGCGGAGTTAAA+AGG 0.296770 2_2:-42859677 Msa0252150:CDS
AAGAACGATTGGGTGTGGTT+TGG 0.299575 2_2:+42860056 None:intergenic
TCCAAGGTCTCATCTAAAAT+TGG 0.303839 2_2:-42857173 Msa0252150:CDS
GCCACCAACTTCTCTACTTC+TGG 0.308172 2_2:+42858014 None:intergenic
GGGAGGAGTGAGATGGTTGT+GGG 0.311165 2_2:+42859905 None:intergenic
GTCCATTCCATATGATGGTT+TGG 0.319459 2_2:+42856720 None:intergenic
GGATTATTGACAGGTTATTA+AGG 0.325099 2_2:-42858054 Msa0252150:intron
CACCGGTGGTGGTGCAAGTT+TGG 0.328292 2_2:-42856070 Msa0252150:CDS
TGGGGTGGTGGATGGGGAAG+AGG 0.341920 2_2:+42859871 None:intergenic
TAGGAACTTGACTACCTTGT+TGG 0.343922 2_2:-42857242 Msa0252150:CDS
AGGAACTTGACTACCTTGTT+GGG 0.344781 2_2:-42857241 Msa0252150:CDS
TGAATTAGATATTTAATAGT+TGG 0.346065 2_2:+42859566 None:intergenic
TCCATTCCATATGATGGTTT+GGG 0.378519 2_2:+42856721 None:intergenic
AAACTTATGGCAGCAACTAA+TGG 0.381333 2_2:+42855788 None:intergenic
AGTCATTCTTTCTAGCCATT+TGG 0.381908 2_2:-42859531 Msa0252150:intron
CAAACCTGGCTGTTTGCATC+AGG 0.388375 2_2:+42856939 None:intergenic
TTGGAAGGCAAAGAGCTTCC+AGG 0.397132 2_2:-42856042 Msa0252150:CDS
TATTTGGGAGTGACACCCTT+TGG 0.399527 2_2:+42858229 None:intergenic
TCCAATGAGTTCGGAGAGCC+GGG 0.404430 2_2:+42858186 None:intergenic
TATTTGAAGCCATCTGTTGC+CGG 0.409134 2_2:-42857819 Msa0252150:CDS
AGGAGAGTTGGATGCGGGAG+GGG 0.411082 2_2:+42859846 None:intergenic
CATTGGTCCATTCCATATGA+TGG 0.411281 2_2:+42856715 None:intergenic
GGAGGAGTGAGATGGTTGTG+GGG 0.411898 2_2:+42859906 None:intergenic
TGAGGAGAGTTGGATGCGGG+AGG 0.417320 2_2:+42859844 None:intergenic
TCCAATCCCATCCAACCATC+AGG 0.417713 2_2:+42856791 None:intergenic
TTCCAATGAGTTCGGAGAGC+CGG 0.429846 2_2:+42858185 None:intergenic
AGAGGTGCCAAGCTGTATTT+GGG 0.433038 2_2:+42858214 None:intergenic
GCCCGCCCACTCCGCCGACT+TGG 0.433426 2_2:-42859812 Msa0252150:CDS
GAGGAGTGAGATGGTTGTGG+GGG 0.435325 2_2:+42859907 None:intergenic
GGAGAGTTGGATGCGGGAGG+GGG 0.435773 2_2:+42859847 None:intergenic
TGCAGCTGACCCTTTGTTGG+CGG 0.436295 2_2:-42859783 Msa0252150:CDS
GAATTTATGGCTTTGAGCCT+AGG 0.438421 2_2:+42855822 None:intergenic
TTCTGGACCAATACTGTCTT+CGG 0.442920 2_2:+42858031 None:intergenic
GGGCAGTATCAAGCCCAAAA+AGG 0.443174 2_2:-42857220 Msa0252150:CDS
CCCTTTGTTGGCGGTTCAGG+TGG 0.443452 2_2:-42859774 Msa0252150:CDS
GACTCCCTCTGTTGATGCAT+GGG 0.445361 2_2:+42857848 None:intergenic
CGAAGCCAAGTCGGCGGAGT+GGG 0.446914 2_2:+42859807 None:intergenic
TCATCAAGGGCGAGGACACC+TGG 0.447264 2_2:+42856024 None:intergenic
GTAAGCGGGAGAGGAGTAAG+AGG 0.448191 2_2:-42859734 Msa0252150:CDS
ATGCATTCGGTACTGCTCAC+AGG 0.450363 2_2:-42857872 Msa0252150:CDS
TGGTGCAAGTTTGGAGCTAT+TGG 0.450844 2_2:-42856061 Msa0252150:CDS
AGCCAAGTCGGCGGAGTGGG+CGG 0.455059 2_2:+42859810 None:intergenic
AAAGTTGACATCCTTCTTCT+CGG 0.456222 2_2:-42857128 Msa0252150:CDS
TGCCATCCCTGATGGTTGGA+TGG 0.456434 2_2:-42856798 Msa0252150:CDS
GCCAAGTCGGCGGAGTGGGC+GGG 0.460638 2_2:+42859811 None:intergenic
AAGAGGATTTAGTGGTGGGG+AGG 0.466020 2_2:+42859888 None:intergenic
AAGAAGTTGGCCGACCTTAG+TGG 0.470544 2_2:-42856180 Msa0252150:CDS
GGCGGTTCAGGTGGCGTCGA+AGG 0.471502 2_2:-42859765 Msa0252150:CDS
GTGAGGACAGTAAGCGGGAG+AGG 0.473119 2_2:-42859743 Msa0252150:CDS
TCAGTCTATTGCAAAGAAGT+TGG 0.473203 2_2:-42856193 Msa0252150:intron
TAAAACATTCAATGAAGCAT+TGG 0.477391 2_2:-42856750 Msa0252150:CDS
CCTTGTAGAGGAAGATAAGT+TGG 0.479283 2_2:-42857051 Msa0252150:CDS
CGCCGAGGAATGAGGAGAGT+TGG 0.479460 2_2:+42859834 None:intergenic
CCCCGGCTCTCCGAACTCAT+TGG 0.481433 2_2:-42858187 Msa0252150:CDS
AGAAGTAGAACTCCTCCGTC+TGG 0.481985 2_2:+42857984 None:intergenic
TGGGGAAGAGGATTTAGTGG+TGG 0.482996 2_2:+42859883 None:intergenic
ATACCACCCAAACCATCATA+TGG 0.484602 2_2:-42856727 Msa0252150:CDS
TTGGCCGACCTTAGTGGAAA+GGG 0.487397 2_2:-42856174 Msa0252150:CDS
CCCTGATGGTTGGATGGGAT+TGG 0.487908 2_2:-42856792 Msa0252150:CDS
GAACGATTGGGTGTGGTTTG+GGG 0.490748 2_2:+42860058 None:intergenic
CGACTGGTGTGGCTTCATCA+AGG 0.491924 2_2:+42856010 None:intergenic
CCAACTTATCTTCCTCTACA+AGG 0.492018 2_2:+42857051 None:intergenic
CCACCCACAATTGCAGCAAA+TGG 0.492445 2_2:+42857197 None:intergenic
TCATTCCTCCACCGAGAAGA+AGG 0.493393 2_2:+42857117 None:intergenic
CGCCCCTGATGCAAACAGCC+AGG 0.498814 2_2:-42856943 Msa0252150:intron
AGAGTGTTGGAGATTTGAGT+GGG 0.500144 2_2:-42859691 Msa0252150:CDS
GAGGAGAGTTGGATGCGGGA+GGG 0.500293 2_2:+42859845 None:intergenic
CACCACCACCGGTGGATATG+TGG 0.503719 2_2:+42856079 None:intergenic
GACATCCTTCTTCTCGGTGG+AGG 0.504587 2_2:-42857122 Msa0252150:CDS
TGACTCCCTCTGTTGATGCA+TGG 0.505501 2_2:+42857847 None:intergenic
TGCAATTGTGGGTGGTTCCA+AGG 0.506170 2_2:-42857189 Msa0252150:CDS
TGGGCGGGCGCCGAGGAATG+AGG 0.508092 2_2:+42859826 None:intergenic
AAATTGTCTTACACGGCGAC+TGG 0.508972 2_2:+42855994 None:intergenic
CCACCTGAACCGCCAACAAA+GGG 0.511955 2_2:+42859774 None:intergenic
AGGAACAAAGGAAGAACGAT+TGG 0.512865 2_2:+42860045 None:intergenic
ATCATATGGAATGGACCAAT+GGG 0.515486 2_2:-42856713 Msa0252150:CDS
CCATCAGGGATGGCAGATGC+TGG 0.516699 2_2:+42856806 None:intergenic
AGGAGATTCTGTTGCAGCTG+TGG 0.521058 2_2:-42856130 Msa0252150:CDS
AAGGCCATTTGCTGCAATTG+TGG 0.523726 2_2:-42857201 Msa0252150:CDS
GGGGAAGAGGATTTAGTGGT+GGG 0.524758 2_2:+42859884 None:intergenic
GAGTGACACACCCTTTGCCT+TGG 0.526454 2_2:+42857001 None:intergenic
CTCCAAACTTGCACCACCAC+CGG 0.527384 2_2:+42856068 None:intergenic
AGGCCATTTGCTGCAATTGT+GGG 0.527834 2_2:-42857200 Msa0252150:CDS
AACCTGGCTGTTTGCATCAG+GGG 0.528684 2_2:+42856941 None:intergenic
ATTAAGGCCGAAGACAGTAT+TGG 0.529102 2_2:-42858038 Msa0252150:CDS
TGGTCCAGAAGTAGAGAAGT+TGG 0.529912 2_2:-42858018 Msa0252150:CDS
TCTGCAATCACCACATCACT+TGG 0.530000 2_2:+42856972 None:intergenic
GGCGGAGTGGGCGGGCGCCG+AGG 0.530211 2_2:+42859819 None:intergenic
ATCCAACTCTCCTCATTCCT+CGG 0.531300 2_2:-42859836 Msa0252150:CDS
TACCTCGATTCCAATGAGTT+CGG 0.531696 2_2:+42858177 None:intergenic
TTGTGAGAACACTGAAACCG+AGG 0.535903 2_2:+42855949 None:intergenic
GCCATCCCTGATGGTTGGAT+GGG 0.536052 2_2:-42856797 Msa0252150:CDS
CATCTGCCATCCCTGATGGT+TGG 0.539191 2_2:-42856802 Msa0252150:CDS
ATTAAATATCTAATTCAGAA+TGG 0.540703 2_2:-42859560 Msa0252150:CDS
AGAATATTACTGATGATACT+AGG 0.543997 2_2:-42859604 Msa0252150:CDS
GCCACCTGAACCGCCAACAA+AGG 0.545249 2_2:+42859773 None:intergenic
GAGTTTGACAAGTTTGCTGT+TGG 0.546134 2_2:-42856683 Msa0252150:CDS
GTAGAACTCCTCCGTCTGGA+AGG 0.546631 2_2:+42857988 None:intergenic
CCATTTGCTGCAATTGTGGG+TGG 0.547865 2_2:-42857197 Msa0252150:CDS
ACCCAAACCATCATATGGAA+TGG 0.549209 2_2:-42856722 Msa0252150:CDS
TGTTGGAGATTTGAGTGGGG+CGG 0.549427 2_2:-42859687 Msa0252150:CDS
AATTTACAGGGAAGGCCAAA+GGG 0.551854 2_2:-42858244 Msa0252150:intron
TTCAGGTGGCGTCGAAGGTG+AGG 0.551919 2_2:-42859760 Msa0252150:CDS
CATCATATGGAATGGACCAA+TGG 0.552065 2_2:-42856714 Msa0252150:CDS
GCTTGGCACCTCTTGTTCCC+CGG 0.553520 2_2:-42858204 Msa0252150:CDS
GTTGCAGCTGTGGAGAAAGT+AGG 0.554074 2_2:-42856120 Msa0252150:CDS
AAGAGTGTTGGAGATTTGAG+TGG 0.554263 2_2:-42859692 Msa0252150:CDS
CGAAGGTGAGGACAGTAAGC+GGG 0.555356 2_2:-42859748 Msa0252150:CDS
TTCTACTTCTTGAAAATGTG+AGG 0.555785 2_2:-42857971 Msa0252150:CDS
ATTGCTAAAGCCAAGGCAAA+GGG 0.556209 2_2:-42857011 Msa0252150:CDS
AATTGCTAAAGCCAAGGCAA+AGG 0.556809 2_2:-42857012 Msa0252150:CDS
TGCATTCGGTACTGCTCACA+GGG 0.557008 2_2:-42857871 Msa0252150:CDS
GTCTTACACGGCGACTGGTG+TGG 0.558517 2_2:+42855999 None:intergenic
ACTCTTGCTGCCAAGTGATG+TGG 0.558831 2_2:-42856982 Msa0252150:CDS
GCGAAGCCAAGTCGGCGGAG+TGG 0.559227 2_2:+42859806 None:intergenic
AAGGCACAAGGTCTTGCAGT+TGG 0.559506 2_2:-42857080 Msa0252150:CDS
GACTGGTGTGGCTTCATCAA+GGG 0.559879 2_2:+42856011 None:intergenic
GAATGAGGAGAGTTGGATGC+GGG 0.560217 2_2:+42859841 None:intergenic
AGCCACATATCCACCGGTGG+TGG 0.561258 2_2:-42856081 Msa0252150:CDS
TCAAACTCAAACACTCCCAT+TGG 0.562382 2_2:+42856698 None:intergenic
CAAGTTTGCTGTTGGAACAG+AGG 0.563230 2_2:-42856675 Msa0252150:intron
TCGATGGCGAAGAAGAGTGT+TGG 0.565955 2_2:-42859704 Msa0252150:CDS
TCGGAGAGCCGGGGAACAAG+AGG 0.566246 2_2:+42858196 None:intergenic
TCGAAGGTGAGGACAGTAAG+CGG 0.566470 2_2:-42859749 Msa0252150:CDS
AGTGGTGGGGAGGAGTGAGA+TGG 0.566517 2_2:+42859898 None:intergenic
GGATGGGGAAGAGGATTTAG+TGG 0.567768 2_2:+42859880 None:intergenic
AAAAGAAAACCGGCAACAGA+TGG 0.573081 2_2:+42857810 None:intergenic
CCAGCATCTGCCATCCCTGA+TGG 0.573732 2_2:-42856806 Msa0252150:CDS
ATTCCATATGATGGTTTGGG+TGG 0.577654 2_2:+42856724 None:intergenic
AACACTAATTGCTAAAGCCA+AGG 0.581644 2_2:-42857018 Msa0252150:CDS
AGTAAGAGGAGTGGTGTCGA+TGG 0.583231 2_2:-42859720 Msa0252150:CDS
AAATTTACAGGGAAGGCCAA+AGG 0.583466 2_2:-42858245 Msa0252150:intron
GTTGGCCGACCTTAGTGGAA+AGG 0.583768 2_2:-42856175 Msa0252150:CDS
AAATTTACACTAACAAACTC+GGG 0.584120 2_2:+42855895 None:intergenic
AAACCTGGCTGTTTGCATCA+GGG 0.584272 2_2:+42856940 None:intergenic
CTGTATGTGAATGATGCATT+CGG 0.584611 2_2:-42857885 Msa0252150:CDS
AAAGGAAGAACGATTGGGTG+TGG 0.584748 2_2:+42860051 None:intergenic
CAGCTGCAGCGAAGCCAAGT+CGG 0.585809 2_2:+42859798 None:intergenic
GGGAAGAGGATTTAGTGGTG+GGG 0.587400 2_2:+42859885 None:intergenic
AAAATTTACACTAACAAACT+CGG 0.588917 2_2:+42855894 None:intergenic
GTGTGGCTTCATCAAGGGCG+AGG 0.589679 2_2:+42856016 None:intergenic
TCCCATCCAACCATCAGGGA+TGG 0.591331 2_2:+42856796 None:intergenic
GATGTGGACGTGAGGAACAA+AGG 0.591498 2_2:+42860033 None:intergenic
CTGAATGAATGAATGTAGAG+GGG 0.592254 2_2:+42859996 None:intergenic
CACATACAGATCTGCGAGTG+CGG 0.592722 2_2:+42857899 None:intergenic
GCAAGTTTGGAGCTATTGGA+AGG 0.593757 2_2:-42856057 Msa0252150:CDS
GTCATGAGCCACATATCCAC+CGG 0.595301 2_2:-42856087 Msa0252150:CDS
GGGGTGACAACTATTATTGG+AGG 0.595480 2_2:-42856153 Msa0252150:CDS
GGAATGAGGAGAGTTGGATG+CGG 0.598775 2_2:+42859840 None:intergenic
GGAACAAAGGAAGAACGATT+GGG 0.599505 2_2:+42860046 None:intergenic
CGGGAGAGGAGTAAGAGGAG+TGG 0.599596 2_2:-42859729 Msa0252150:CDS
GGAACTTGACTACCTTGTTG+GGG 0.602846 2_2:-42857240 Msa0252150:CDS
CTCCGAACTCATTGGAATCG+AGG 0.608154 2_2:-42858179 Msa0252150:intron
TAGAACTCCTCCGTCTGGAA+GGG 0.608774 2_2:+42857989 None:intergenic
ATATTCTGATTATCATCAAG+AGG 0.609805 2_2:+42859620 None:intergenic
GTGACAACTATTATTGGAGG+AGG 0.610339 2_2:-42856150 Msa0252150:CDS
GAGTGTTGGAGATTTGAGTG+GGG 0.613290 2_2:-42859690 Msa0252150:CDS
ACTGAATGAATGAATGTAGA+GGG 0.614323 2_2:+42859995 None:intergenic
TGTCTCTTATCGTTGAGATG+AGG 0.614873 2_2:+42860089 None:intergenic
AGTTGGTTCATCCCTTGTAG+AGG 0.617364 2_2:-42857063 Msa0252150:CDS
GGGAATATAGAAGAAAGATG+TGG 0.617404 2_2:+42860017 None:intergenic
GGTTGGATGGGATTGGACAT+CGG 0.618080 2_2:-42856785 Msa0252150:CDS
GTGGCTTCCCTTCCAGACGG+AGG 0.619373 2_2:-42857996 Msa0252150:CDS
GGATATGTGGCTCATGACAT+CGG 0.619929 2_2:+42856092 None:intergenic
TTGCTTGTAACTGTAAACCT+AGG 0.624625 2_2:-42855839 Msa0252150:three_prime_UTR
CAAACTTGCACCACCACCGG+TGG 0.628444 2_2:+42856071 None:intergenic
TTTACACTAACAAACTCGGG+AGG 0.628511 2_2:+42855898 None:intergenic
CCAATCCCATCCAACCATCA+GGG 0.630024 2_2:+42856792 None:intergenic
TCCAGAAGTAGAGAAGTTGG+TGG 0.630675 2_2:-42858015 Msa0252150:CDS
TTGGTGGCTTCCCTTCCAGA+CGG 0.631143 2_2:-42857999 Msa0252150:CDS
TGGCCGACCTTAGTGGAAAG+GGG 0.632267 2_2:-42856173 Msa0252150:CDS
TTACACTAACAAACTCGGGA+GGG 0.636995 2_2:+42855899 None:intergenic
TGTCACTCCCAAATACAGCT+TGG 0.637672 2_2:-42858221 Msa0252150:CDS
CAACTTATCTTCCTCTACAA+GGG 0.642305 2_2:+42857052 None:intergenic
ACAACATAAGCTCTTATACA+AGG 0.642791 2_2:+42855926 None:intergenic
AGAAGAAAGATGTGGACGTG+AGG 0.642909 2_2:+42860025 None:intergenic
GTTGACATCCTTCTTCTCGG+TGG 0.644584 2_2:-42857125 Msa0252150:CDS
TGAATGAATGAATGTAGAGG+GGG 0.644990 2_2:+42859997 None:intergenic
GGCTTGATACTGCCCCAACA+AGG 0.645353 2_2:+42857228 None:intergenic
GAGAACACTGAAACCGAGGG+TGG 0.647006 2_2:+42855953 None:intergenic
CTGCAGCGAAGCCAAGTCGG+CGG 0.647239 2_2:+42859801 None:intergenic
AACACACTCTCTCTCTACAA+TGG 0.650157 2_2:-42859942 Msa0252150:exon
GAGCTGAAAATTGTCTTACA+CGG 0.652885 2_2:+42855987 None:intergenic
AGGGCCCATGCATCAACAGA+GGG 0.656285 2_2:-42857852 Msa0252150:CDS
GGCCGACCTTAGTGGAAAGG+GGG 0.657571 2_2:-42856172 Msa0252150:CDS
TAATAGTTGGAATCGCAGCA+CGG 0.662985 2_2:+42859579 None:intergenic
AGAACACTGAAACCGAGGGT+GGG 0.674665 2_2:+42855954 None:intergenic
AACTGAATGAATGAATGTAG+AGG 0.674742 2_2:+42859994 None:intergenic
CAGGGCCCATGCATCAACAG+AGG 0.685126 2_2:-42857853 Msa0252150:CDS
TGTGAGAACACTGAAACCGA+GGG 0.688071 2_2:+42855950 None:intergenic
ATGAGCCACATATCCACCGG+TGG 0.700239 2_2:-42856084 Msa0252150:CDS
CCAATGAGTTCGGAGAGCCG+GGG 0.745603 2_2:+42858187 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCAATTTAAGAAAATTA+AGG - chr2_2:42856474-42856493 Msa0252150:intron 10.0%
!! TTAATATTTATATTAAGAGT+AGG + chr2_2:42857436-42857455 None:intergenic 10.0%
!! AAATGATAATTAATTAATTG+AGG + chr2_2:42858415-42858434 None:intergenic 10.0%
!!! TAATTTTAAAAAAATAGAAG+TGG + chr2_2:42859329-42859348 None:intergenic 10.0%
!!! CAAAATTATTATTTTGAAAT+TGG - chr2_2:42859480-42859499 Msa0252150:intron 10.0%
!! TGAATTAGATATTTAATAGT+TGG + chr2_2:42856223-42856242 None:intergenic 15.0%
!! ATTAAATATCTAATTCAGAA+TGG - chr2_2:42856226-42856245 Msa0252150:intron 15.0%
!!! TTCATATTTTAGTTATAATG+TGG - chr2_2:42856329-42856348 Msa0252150:intron 15.0%
!!! AGTAAAAATTAGATATTTTG+AGG - chr2_2:42856768-42856787 Msa0252150:CDS 15.0%
!! AATTTGAAGAAAATTAGAAT+AGG - chr2_2:42856833-42856852 Msa0252150:intron 15.0%
!!! TTCATACTAATAAAGTATTT+GGG - chr2_2:42856978-42856997 Msa0252150:CDS 15.0%
!!! TTCATTTTATTGTAATGTTA+AGG - chr2_2:42857099-42857118 Msa0252150:CDS 15.0%
!!! TCATTTTATTGTAATGTTAA+GGG - chr2_2:42857100-42857119 Msa0252150:CDS 15.0%
!!! TCATTTTCTATAATTATATC+TGG - chr2_2:42857225-42857244 Msa0252150:CDS 15.0%
!! GTATGTTTAATTGTTTATAT+TGG - chr2_2:42857629-42857648 Msa0252150:intron 15.0%
!! TCATAAATTGTAAAAGAAAA+TGG + chr2_2:42858278-42858297 None:intergenic 15.0%
!! AAATGTAAAAAACAAACTTA+TGG + chr2_2:42860014-42860033 None:intergenic 15.0%
!!! TGTTTTTTACATTTATCTTT+AGG - chr2_2:42860020-42860039 Msa0252150:five_prime_UTR 15.0%
!!! TGTTTGTGTAAGATTTTTTT+TGG + chr2_2:42855828-42855847 None:intergenic 20.0%
!! AATGAGATATATATACCAAA+TGG + chr2_2:42856273-42856292 None:intergenic 20.0%
!!! ATTGTTTTGAATTTCAGTTA+TGG - chr2_2:42856804-42856823 Msa0252150:CDS 20.0%
!!! GTTCATACTAATAAAGTATT+TGG - chr2_2:42856977-42856996 Msa0252150:CDS 20.0%
!!! TATATTGGTTATGATTATTG+AGG - chr2_2:42857644-42857663 Msa0252150:intron 20.0%
!!! TAGATAGTTTGCATAAAATT+TGG + chr2_2:42858054-42858073 None:intergenic 20.0%
!!! TATGCAAACTATCTAAAATA+AGG - chr2_2:42858059-42858078 Msa0252150:intron 20.0%
!!! ATGAAATTTTACTTCATGTT+AGG + chr2_2:42858147-42858166 None:intergenic 20.0%
!!! TAATTGAAAATGTTTTCAGA+AGG - chr2_2:42858443-42858462 Msa0252150:intron 20.0%
!!! TTGAATGTTTTAATAGAATC+TGG + chr2_2:42859028-42859047 None:intergenic 20.0%
!! AAAAATAGAATATGTGGTAA+CGG + chr2_2:42859527-42859546 None:intergenic 20.0%
!! AAGTAGAAAAATAGAATATG+TGG + chr2_2:42859533-42859552 None:intergenic 20.0%
!! GAAAATGTAAATTATGTAAC+CGG + chr2_2:42859563-42859582 None:intergenic 20.0%
!! AAAATTTACACTAACAAACT+CGG + chr2_2:42859895-42859914 None:intergenic 20.0%
!! GGAAGATTTATTTGAATTTA+TGG + chr2_2:42859980-42859999 None:intergenic 20.0%
! ATATTCTGATTATCATCAAG+AGG + chr2_2:42856169-42856188 None:intergenic 25.0%
! AGAATATTACTGATGATACT+AGG - chr2_2:42856182-42856201 Msa0252150:CDS 25.0%
!!! TCTCATTTCTCTCATTTTTT+TGG - chr2_2:42856286-42856305 Msa0252150:intron 25.0%
! CATACGAATCAAAAATTGAA+GGG + chr2_2:42856665-42856684 None:intergenic 25.0%
! CTGATTTCCATTAACATATA+GGG + chr2_2:42856725-42856744 None:intergenic 25.0%
! TCTGATTTCCATTAACATAT+AGG + chr2_2:42856726-42856745 None:intergenic 25.0%
! ATGGATGTTGAATAAGATTA+TGG - chr2_2:42856897-42856916 Msa0252150:intron 25.0%
!!! ATTTGGGTTTTAATTTGAAC+TGG - chr2_2:42856994-42857013 Msa0252150:CDS 25.0%
! AGCATTTAGATAATGAAACA+TGG + chr2_2:42857148-42857167 None:intergenic 25.0%
! ATCTTTATAACAATGCATGT+TGG - chr2_2:42857185-42857204 Msa0252150:CDS 25.0%
! CCAACAAAAAATATGACAAA+AGG + chr2_2:42857294-42857313 None:intergenic 25.0%
!!! CCTTTTGTCATATTTTTTGT+TGG - chr2_2:42857291-42857310 Msa0252150:intron 25.0%
!!! ATTTTTTGTTGGTGAAGTTA+AGG - chr2_2:42857302-42857321 Msa0252150:intron 25.0%
! TGAAAATGTAATTACAGAGT+GGG + chr2_2:42857394-42857413 None:intergenic 25.0%
!! TGACTTTTGATGAAATTTAC+AGG - chr2_2:42857529-42857548 Msa0252150:intron 25.0%
!! GACTTTTGATGAAATTTACA+GGG - chr2_2:42857530-42857549 Msa0252150:intron 25.0%
! ATAATCCAAATGCAAGAAAA+GGG + chr2_2:42857719-42857738 None:intergenic 25.0%
! AATAATCCAAATGCAAGAAA+AGG + chr2_2:42857720-42857739 None:intergenic 25.0%
!! TTGATGTTATTTAGTAGAAG+AGG + chr2_2:42858023-42858042 None:intergenic 25.0%
! CTTCTACTAAATAACATCAA+TGG - chr2_2:42858023-42858042 Msa0252150:CDS 25.0%
! TTGAGGAAAATAATTGTGAT+AGG + chr2_2:42858398-42858417 None:intergenic 25.0%
!! CATGCATATTTTCATGTTTT+AGG - chr2_2:42858525-42858544 Msa0252150:intron 25.0%
!! AATGATCTTCACATTTTACA+AGG - chr2_2:42858687-42858706 Msa0252150:intron 25.0%
! TAAAACATTCAATGAAGCAT+TGG - chr2_2:42859036-42859055 Msa0252150:intron 25.0%
! TTTGCAATAGACTGAAAAAA+GGG + chr2_2:42859588-42859607 None:intergenic 25.0%
! AAATTTACACTAACAAACTC+GGG + chr2_2:42859894-42859913 None:intergenic 25.0%
ACTGAATGAATGAATGTAGA+GGG + chr2_2:42855794-42855813 None:intergenic 30.0%
AACTGAATGAATGAATGTAG+AGG + chr2_2:42855795-42855814 None:intergenic 30.0%
!! GTTTAATTTGTATGCACTGA+CGG - chr2_2:42856389-42856408 Msa0252150:intron 30.0%
! TTTTACAAAGACATCCAATG+AGG + chr2_2:42856431-42856450 None:intergenic 30.0%
GCATACGAATCAAAAATTGA+AGG + chr2_2:42856666-42856685 None:intergenic 30.0%
TTCCATTAACATATAGGGAA+GGG + chr2_2:42856720-42856739 None:intergenic 30.0%
TTTCCATTAACATATAGGGA+AGG + chr2_2:42856721-42856740 None:intergenic 30.0%
ATTATGGAGATGATGAAGTA+TGG - chr2_2:42856913-42856932 Msa0252150:intron 30.0%
! ACTTCAAATTTTACCCTCTA+AGG + chr2_2:42857033-42857052 None:intergenic 30.0%
CATTATCTAAATGCTTGCTT+TGG - chr2_2:42857153-42857172 Msa0252150:CDS 30.0%
TTATAACAATGCATGTTGGA+TGG - chr2_2:42857189-42857208 Msa0252150:CDS 30.0%
GTGAAAATGTAATTACAGAG+TGG + chr2_2:42857395-42857414 None:intergenic 30.0%
TTTGATGAAATTTACAGGGA+AGG - chr2_2:42857534-42857553 Msa0252150:intron 30.0%
TGGTTATGATTATTGAGGAA+CGG - chr2_2:42857649-42857668 Msa0252150:intron 30.0%
GGATTATTGACAGGTTATTA+AGG - chr2_2:42857732-42857751 Msa0252150:intron 30.0%
TTCTACTTCTTGAAAATGTG+AGG - chr2_2:42857815-42857834 Msa0252150:CDS 30.0%
! TGAAAATGTGAGGTTTTACA+AGG - chr2_2:42857825-42857844 Msa0252150:CDS 30.0%
! AACCTTTTGCAAAAGAAAAC+CGG + chr2_2:42857989-42858008 None:intergenic 30.0%
GTCAAATGTGAATCATTCTT+CGG - chr2_2:42858167-42858186 Msa0252150:intron 30.0%
TCAAATGTGAATCATTCTTC+GGG - chr2_2:42858168-42858187 Msa0252150:intron 30.0%
! AGACAAATGAAAACACGTTT+TGG + chr2_2:42858336-42858355 None:intergenic 30.0%
! ATGTTTTCAGAAGGTAATCA+AGG - chr2_2:42858452-42858471 Msa0252150:intron 30.0%
AAAGGGATAATGCAGAATTT+AGG + chr2_2:42858951-42858970 None:intergenic 30.0%
! TATAAGAGTATGCATCACTA+TGG + chr2_2:42859214-42859233 None:intergenic 30.0%
AATGTAAATTATGTAACCGG+CGG + chr2_2:42859560-42859579 None:intergenic 30.0%
CTTTGCAATAGACTGAAAAA+AGG + chr2_2:42859589-42859608 None:intergenic 30.0%
ACAACATAAGCTCTTATACA+AGG + chr2_2:42859863-42859882 None:intergenic 30.0%
GGGAATATAGAAGAAAGATG+TGG + chr2_2:42855772-42855791 None:intergenic 35.0%
TGAATGAATGAATGTAGAGG+GGG + chr2_2:42855792-42855811 None:intergenic 35.0%
CTGAATGAATGAATGTAGAG+GGG + chr2_2:42855793-42855812 None:intergenic 35.0%
! AGTCATTCTTTCTAGCCATT+TGG - chr2_2:42856255-42856274 Msa0252150:intron 35.0%
TTCCCTTCCCTATATGTTAA+TGG - chr2_2:42856715-42856734 Msa0252150:CDS 35.0%
ATCTCTCTCGAATTGAGATA+TGG - chr2_2:42856878-42856897 Msa0252150:intron 35.0%
AAGTAAAGATGCACCTTAGA+GGG - chr2_2:42857017-42857036 Msa0252150:CDS 35.0%
TATCTAAATGCTTGCTTTGG+AGG - chr2_2:42857156-42857175 Msa0252150:CDS 35.0%
TTAAGTTTGCATAAACGCCA+TGG - chr2_2:42857481-42857500 Msa0252150:intron 35.0%
CAACTTACAAGTTCAAACCA+TGG + chr2_2:42857501-42857520 None:intergenic 35.0%
GGTTATGATTATTGAGGAAC+GGG - chr2_2:42857650-42857669 Msa0252150:intron 35.0%
CTTGCATTTGGATTATTGAC+AGG - chr2_2:42857723-42857742 Msa0252150:intron 35.0%
! AAATGTGAGGTTTTACAAGG+AGG - chr2_2:42857828-42857847 Msa0252150:CDS 35.0%
CTGTATGTGAATGATGCATT+CGG - chr2_2:42857901-42857920 Msa0252150:CDS 35.0%
! GGTTTTCTTTTGCAAAAGGT+TGG - chr2_2:42857988-42858007 Msa0252150:CDS 35.0%
CAAATGTGAATCATTCTTCG+GGG - chr2_2:42858169-42858188 Msa0252150:intron 35.0%
ATGACACACGGAAAGTAAAT+GGG + chr2_2:42858206-42858225 None:intergenic 35.0%
AGAGATGAAAACATGACACA+CGG + chr2_2:42858218-42858237 None:intergenic 35.0%
TAATTGTGATAGGCTGAAGA+CGG + chr2_2:42858388-42858407 None:intergenic 35.0%
! TCCAAGGTCTCATCTAAAAT+TGG - chr2_2:42858613-42858632 Msa0252150:intron 35.0%
! TCCAATTTTAGATGAGACCT+TGG + chr2_2:42858617-42858636 None:intergenic 35.0%
AAAGTTGACATCCTTCTTCT+CGG - chr2_2:42858658-42858677 Msa0252150:intron 35.0%
! TTCACATTTTACAAGGCACA+AGG - chr2_2:42858694-42858713 Msa0252150:intron 35.0%
CAACTTATCTTCCTCTACAA+GGG + chr2_2:42858737-42858756 None:intergenic 35.0%
AACACTAATTGCTAAAGCCA+AGG - chr2_2:42858768-42858787 Msa0252150:intron 35.0%
AGTAGCTTAGAAAACAAACC+TGG + chr2_2:42858864-42858883 None:intergenic 35.0%
TCCATTCCATATGATGGTTT+GGG + chr2_2:42859068-42859087 None:intergenic 35.0%
ATCATATGGAATGGACCAAT+GGG - chr2_2:42859073-42859092 Msa0252150:intron 35.0%
GAACCATCACATATAGAGTT+TGG - chr2_2:42859141-42859160 Msa0252150:intron 35.0%
GAACCAAACTCTATATGTGA+TGG + chr2_2:42859147-42859166 None:intergenic 35.0%
GATGCATACTCTTATAAGTG+TGG - chr2_2:42859218-42859237 Msa0252150:intron 35.0%
! GTGTCTTCAATCAAAAGTGT+CGG + chr2_2:42859260-42859279 None:intergenic 35.0%
TCAGTCTATTGCAAAGAAGT+TGG - chr2_2:42859593-42859612 Msa0252150:CDS 35.0%
GAGCTGAAAATTGTCTTACA+CGG + chr2_2:42859802-42859821 None:intergenic 35.0%
TTGCTTGTAACTGTAAACCT+AGG - chr2_2:42859947-42859966 Msa0252150:five_prime_UTR 35.0%
AAACTTATGGCAGCAACTAA+TGG + chr2_2:42860001-42860020 None:intergenic 35.0%
TGTCTCTTATCGTTGAGATG+AGG + chr2_2:42855700-42855719 None:intergenic 40.0%
GGAACAAAGGAAGAACGATT+GGG + chr2_2:42855743-42855762 None:intergenic 40.0%
AGGAACAAAGGAAGAACGAT+TGG + chr2_2:42855744-42855763 None:intergenic 40.0%
AACACACTCTCTCTCTACAA+TGG - chr2_2:42855844-42855863 Msa0252150:three_prime_UTR 40.0%
!! AAGAGTGTTGGAGATTTGAG+TGG - chr2_2:42856094-42856113 Msa0252150:CDS 40.0%
!! AGAGTGTTGGAGATTTGAGT+GGG - chr2_2:42856095-42856114 Msa0252150:CDS 40.0%
TAATAGTTGGAATCGCAGCA+CGG + chr2_2:42856210-42856229 None:intergenic 40.0%
! TTTGATTCGAGTGTCCTCAT+TGG - chr2_2:42856414-42856433 Msa0252150:intron 40.0%
AAGTGAGCTGTTTGCTTTAG+AGG - chr2_2:42856597-42856616 Msa0252150:intron 40.0%
GAATCTGAGTAACTCGCATA+TGG - chr2_2:42856624-42856643 Msa0252150:intron 40.0%
ATAGGGAAGGGAAAAAGAAG+AGG + chr2_2:42856708-42856727 None:intergenic 40.0%
ATGGAGATGATGAAGTATGG+AGG - chr2_2:42856916-42856935 Msa0252150:intron 40.0%
GAAGTAAAGATGCACCTTAG+AGG - chr2_2:42857016-42857035 Msa0252150:CDS 40.0%
AAATTTACAGGGAAGGCCAA+AGG - chr2_2:42857541-42857560 Msa0252150:intron 40.0%
AATTTACAGGGAAGGCCAAA+GGG - chr2_2:42857542-42857561 Msa0252150:intron 40.0%
TACCTCGATTCCAATGAGTT+CGG + chr2_2:42857612-42857631 None:intergenic 40.0%
! TGTTGCCCTTTTCTTGCATT+TGG - chr2_2:42857711-42857730 Msa0252150:intron 40.0%
ATTAAGGCCGAAGACAGTAT+TGG - chr2_2:42857748-42857767 Msa0252150:intron 40.0%
TTCTGGACCAATACTGTCTT+CGG + chr2_2:42857758-42857777 None:intergenic 40.0%
!!! GCAAGCTTTTTTGCATGTTC+AGG + chr2_2:42857868-42857887 None:intergenic 40.0%
! TATTTGAAGCCATCTGTTGC+CGG - chr2_2:42857967-42857986 Msa0252150:CDS 40.0%
AAAAGAAAACCGGCAACAGA+TGG + chr2_2:42857979-42857998 None:intergenic 40.0%
!!! TGCCGGTTTTCTTTTGCAAA+AGG - chr2_2:42857984-42858003 Msa0252150:CDS 40.0%
TCATTCTTCGGGGAAAACTT+AGG - chr2_2:42858179-42858198 Msa0252150:intron 40.0%
CATGACACACGGAAAGTAAA+TGG + chr2_2:42858207-42858226 None:intergenic 40.0%
TAGGAACTTGACTACCTTGT+TGG - chr2_2:42858544-42858563 Msa0252150:intron 40.0%
AGGAACTTGACTACCTTGTT+GGG - chr2_2:42858545-42858564 Msa0252150:intron 40.0%
! TTGCAGCAAATGGCCTTTTT+GGG + chr2_2:42858582-42858601 None:intergenic 40.0%
! ATTGCAGCAAATGGCCTTTT+TGG + chr2_2:42858583-42858602 None:intergenic 40.0%
CCAACTTATCTTCCTCTACA+AGG + chr2_2:42858738-42858757 None:intergenic 40.0%
CCTTGTAGAGGAAGATAAGT+TGG - chr2_2:42858735-42858754 Msa0252150:intron 40.0%
AATTGCTAAAGCCAAGGCAA+AGG - chr2_2:42858774-42858793 Msa0252150:intron 40.0%
ATTGCTAAAGCCAAGGCAAA+GGG - chr2_2:42858775-42858794 Msa0252150:intron 40.0%
ATACCACCCAAACCATCATA+TGG - chr2_2:42859059-42859078 Msa0252150:intron 40.0%
! ATTCCATATGATGGTTTGGG+TGG + chr2_2:42859065-42859084 None:intergenic 40.0%
ACCCAAACCATCATATGGAA+TGG - chr2_2:42859064-42859083 Msa0252150:intron 40.0%
GTCCATTCCATATGATGGTT+TGG + chr2_2:42859069-42859088 None:intergenic 40.0%
CATTGGTCCATTCCATATGA+TGG + chr2_2:42859074-42859093 None:intergenic 40.0%
CATCATATGGAATGGACCAA+TGG - chr2_2:42859072-42859091 Msa0252150:intron 40.0%
TCAAACTCAAACACTCCCAT+TGG + chr2_2:42859091-42859110 None:intergenic 40.0%
!! GAGTTTGACAAGTTTGCTGT+TGG - chr2_2:42859103-42859122 Msa0252150:intron 40.0%
!! CTTTTGATTGAAGACACGTC+CGG - chr2_2:42859263-42859282 Msa0252150:intron 40.0%
GTTAGTGTGTGTTTACGTGT+CGG - chr2_2:42859351-42859370 Msa0252150:intron 40.0%
!! TAGGAGTTGGTGTTCCTAAA+AGG - chr2_2:42859416-42859435 Msa0252150:intron 40.0%
!! AGGAGTTGGTGTTCCTAAAA+GGG - chr2_2:42859417-42859436 Msa0252150:intron 40.0%
! ATTTTTCTACTTTGCACCGC+CGG - chr2_2:42859541-42859560 Msa0252150:CDS 40.0%
AAGGGGGTGACAACTATTAT+TGG - chr2_2:42859630-42859649 Msa0252150:CDS 40.0%
GTGACAACTATTATTGGAGG+AGG - chr2_2:42859636-42859655 Msa0252150:CDS 40.0%
!!! TCGTAATTTTTTCCCACCCT+CGG - chr2_2:42859820-42859839 Msa0252150:CDS 40.0%
TTACACTAACAAACTCGGGA+GGG + chr2_2:42859890-42859909 None:intergenic 40.0%
TTTACACTAACAAACTCGGG+AGG + chr2_2:42859891-42859910 None:intergenic 40.0%
!! GAATTTATGGCTTTGAGCCT+AGG + chr2_2:42859967-42859986 None:intergenic 40.0%
AGAACGATTGGGTGTGGTTT+GGG + chr2_2:42855732-42855751 None:intergenic 45.0%
AAGAACGATTGGGTGTGGTT+TGG + chr2_2:42855733-42855752 None:intergenic 45.0%
AAAGGAAGAACGATTGGGTG+TGG + chr2_2:42855738-42855757 None:intergenic 45.0%
AGAAGAAAGATGTGGACGTG+AGG + chr2_2:42855764-42855783 None:intergenic 45.0%
ATCCAACTCTCCTCATTCCT+CGG - chr2_2:42855950-42855969 Msa0252150:three_prime_UTR 45.0%
!! GAGTGTTGGAGATTTGAGTG+GGG - chr2_2:42856096-42856115 Msa0252150:CDS 45.0%
GAGATGATGAAGTATGGAGG+CGG - chr2_2:42856919-42856938 Msa0252150:intron 45.0%
TATTTGGGAGTGACACCCTT+TGG + chr2_2:42857560-42857579 None:intergenic 45.0%
TGTCACTCCCAAATACAGCT+TGG - chr2_2:42857565-42857584 Msa0252150:intron 45.0%
!! AGAGGTGCCAAGCTGTATTT+GGG + chr2_2:42857575-42857594 None:intergenic 45.0%
!! AAGAGGTGCCAAGCTGTATT+TGG + chr2_2:42857576-42857595 None:intergenic 45.0%
!! AGGAACGGGTTGAAACATGT+TGG - chr2_2:42857664-42857683 Msa0252150:intron 45.0%
TGGTCCAGAAGTAGAGAAGT+TGG - chr2_2:42857768-42857787 Msa0252150:intron 45.0%
TCCAGAAGTAGAGAAGTTGG+TGG - chr2_2:42857771-42857790 Msa0252150:intron 45.0%
GGAACTTGACTACCTTGTTG+GGG - chr2_2:42858546-42858565 Msa0252150:intron 45.0%
! AAGGCCATTTGCTGCAATTG+TGG - chr2_2:42858585-42858604 Msa0252150:intron 45.0%
! AGGCCATTTGCTGCAATTGT+GGG - chr2_2:42858586-42858605 Msa0252150:intron 45.0%
! AGTTGGTTCATCCCTTGTAG+AGG - chr2_2:42858723-42858742 Msa0252150:intron 45.0%
TCTGCAATCACCACATCACT+TGG + chr2_2:42858817-42858836 None:intergenic 45.0%
AAACCTGGCTGTTTGCATCA+GGG + chr2_2:42858849-42858868 None:intergenic 45.0%
!! CAAGTTTGCTGTTGGAACAG+AGG - chr2_2:42859111-42859130 Msa0252150:intron 45.0%
GAGTATGCATCACTATGGAG+TGG + chr2_2:42859209-42859228 None:intergenic 45.0%
CATGTGTTCATGTCAGACAC+CGG + chr2_2:42859293-42859312 None:intergenic 45.0%
GGTGGCACAAACACAAACAT+CGG + chr2_2:42859385-42859404 None:intergenic 45.0%
! GCAAGATGTACGTCCCTTTT+AGG + chr2_2:42859433-42859452 None:intergenic 45.0%
GGGGTGACAACTATTATTGG+AGG - chr2_2:42859633-42859652 Msa0252150:CDS 45.0%
GGATATGTGGCTCATGACAT+CGG + chr2_2:42859697-42859716 None:intergenic 45.0%
! TGGTGCAAGTTTGGAGCTAT+TGG - chr2_2:42859725-42859744 Msa0252150:CDS 45.0%
! GCAAGTTTGGAGCTATTGGA+AGG - chr2_2:42859729-42859748 Msa0252150:CDS 45.0%
AAATTGTCTTACACGGCGAC+TGG + chr2_2:42859795-42859814 None:intergenic 45.0%
TGTGAGAACACTGAAACCGA+GGG + chr2_2:42859839-42859858 None:intergenic 45.0%
TTGTGAGAACACTGAAACCG+AGG + chr2_2:42859840-42859859 None:intergenic 45.0%
!!! AAAATTATTATTTTGAAATT+GGG - chr2_2:42859481-42859500 Msa0252150:intron 5.0%
!! TGGGTGTGGTTTGGGGATTT+TGG + chr2_2:42855724-42855743 None:intergenic 50.0%
GAACGATTGGGTGTGGTTTG+GGG + chr2_2:42855731-42855750 None:intergenic 50.0%
GATGTGGACGTGAGGAACAA+AGG + chr2_2:42855756-42855775 None:intergenic 50.0%
! AAGAGGATTTAGTGGTGGGG+AGG + chr2_2:42855901-42855920 None:intergenic 50.0%
GGGAAGAGGATTTAGTGGTG+GGG + chr2_2:42855904-42855923 None:intergenic 50.0%
GGGGAAGAGGATTTAGTGGT+GGG + chr2_2:42855905-42855924 None:intergenic 50.0%
TGGGGAAGAGGATTTAGTGG+TGG + chr2_2:42855906-42855925 None:intergenic 50.0%
GGATGGGGAAGAGGATTTAG+TGG + chr2_2:42855909-42855928 None:intergenic 50.0%
GAATGAGGAGAGTTGGATGC+GGG + chr2_2:42855948-42855967 None:intergenic 50.0%
GGAATGAGGAGAGTTGGATG+CGG + chr2_2:42855949-42855968 None:intergenic 50.0%
TCGAAGGTGAGGACAGTAAG+CGG - chr2_2:42856037-42856056 Msa0252150:CDS 50.0%
! AGTAAGAGGAGTGGTGTCGA+TGG - chr2_2:42856066-42856085 Msa0252150:CDS 50.0%
! TCGATGGCGAAGAAGAGTGT+TGG - chr2_2:42856082-42856101 Msa0252150:CDS 50.0%
TGTTGGAGATTTGAGTGGGG+CGG - chr2_2:42856099-42856118 Msa0252150:CDS 50.0%
TTGAGTGGGGCGGAGTTAAA+AGG - chr2_2:42856109-42856128 Msa0252150:CDS 50.0%
ATGATGAAGTATGGAGGCGG+AGG - chr2_2:42856922-42856941 Msa0252150:intron 50.0%
TTCCAATGAGTTCGGAGAGC+CGG + chr2_2:42857604-42857623 None:intergenic 50.0%
CTCCGAACTCATTGGAATCG+AGG - chr2_2:42857607-42857626 Msa0252150:intron 50.0%
GCCACCAACTTCTCTACTTC+TGG + chr2_2:42857775-42857794 None:intergenic 50.0%
TAGAACTCCTCCGTCTGGAA+GGG + chr2_2:42857800-42857819 None:intergenic 50.0%
AGAAGTAGAACTCCTCCGTC+TGG + chr2_2:42857805-42857824 None:intergenic 50.0%
CACATACAGATCTGCGAGTG+CGG + chr2_2:42857890-42857909 None:intergenic 50.0%
ATGCATTCGGTACTGCTCAC+AGG - chr2_2:42857914-42857933 Msa0252150:CDS 50.0%
TGCATTCGGTACTGCTCACA+GGG - chr2_2:42857915-42857934 Msa0252150:CDS 50.0%
GACTCCCTCTGTTGATGCAT+GGG + chr2_2:42857941-42857960 None:intergenic 50.0%
TGACTCCCTCTGTTGATGCA+TGG + chr2_2:42857942-42857961 None:intergenic 50.0%
GCTGAAGACGGAAGACAAGT+TGG + chr2_2:42858376-42858395 None:intergenic 50.0%
GGGCAGTATCAAGCCCAAAA+AGG - chr2_2:42858566-42858585 Msa0252150:intron 50.0%
CCACCCACAATTGCAGCAAA+TGG + chr2_2:42858592-42858611 None:intergenic 50.0%
! CCATTTGCTGCAATTGTGGG+TGG - chr2_2:42858589-42858608 Msa0252150:intron 50.0%
TGCAATTGTGGGTGGTTCCA+AGG - chr2_2:42858597-42858616 Msa0252150:intron 50.0%
GTTGACATCCTTCTTCTCGG+TGG - chr2_2:42858661-42858680 Msa0252150:intron 50.0%
TCATTCCTCCACCGAGAAGA+AGG + chr2_2:42858672-42858691 None:intergenic 50.0%
AAGGCACAAGGTCTTGCAGT+TGG - chr2_2:42858706-42858725 Msa0252150:intron 50.0%
ACTCTTGCTGCCAAGTGATG+TGG - chr2_2:42858804-42858823 Msa0252150:intron 50.0%
AACCTGGCTGTTTGCATCAG+GGG + chr2_2:42858848-42858867 None:intergenic 50.0%
CAAACCTGGCTGTTTGCATC+AGG + chr2_2:42858850-42858869 None:intergenic 50.0%
GATGCTGGCACGATCTGAAA+GGG + chr2_2:42858968-42858987 None:intergenic 50.0%
AGATGCTGGCACGATCTGAA+AGG + chr2_2:42858969-42858988 None:intergenic 50.0%
CCAATCCCATCCAACCATCA+GGG + chr2_2:42858997-42859016 None:intergenic 50.0%
TCCAATCCCATCCAACCATC+AGG + chr2_2:42858998-42859017 None:intergenic 50.0%
GGTTGGATGGGATTGGACAT+CGG - chr2_2:42859001-42859020 Msa0252150:intron 50.0%
CCAACTCCTACTCGATGAAG+CGG + chr2_2:42859406-42859425 None:intergenic 50.0%
AAGAAGTTGGCCGACCTTAG+TGG - chr2_2:42859606-42859625 Msa0252150:CDS 50.0%
TTGGCCGACCTTAGTGGAAA+GGG - chr2_2:42859612-42859631 Msa0252150:CDS 50.0%
TTGTCACCCCCTTTCCACTA+AGG + chr2_2:42859623-42859642 None:intergenic 50.0%
AGGAGATTCTGTTGCAGCTG+TGG - chr2_2:42859656-42859675 Msa0252150:CDS 50.0%
GTTGCAGCTGTGGAGAAAGT+AGG - chr2_2:42859666-42859685 Msa0252150:CDS 50.0%
GTCATGAGCCACATATCCAC+CGG - chr2_2:42859699-42859718 Msa0252150:CDS 50.0%
TTGGAAGGCAAAGAGCTTCC+AGG - chr2_2:42859744-42859763 Msa0252150:CDS 50.0%
GACTGGTGTGGCTTCATCAA+GGG + chr2_2:42859778-42859797 None:intergenic 50.0%
AGAACACTGAAACCGAGGGT+GGG + chr2_2:42859835-42859854 None:intergenic 50.0%
GAGGAGTGAGATGGTTGTGG+GGG + chr2_2:42855882-42855901 None:intergenic 55.0%
GGAGGAGTGAGATGGTTGTG+GGG + chr2_2:42855883-42855902 None:intergenic 55.0%
GGGAGGAGTGAGATGGTTGT+GGG + chr2_2:42855884-42855903 None:intergenic 55.0%
TGCAGCTGACCCTTTGTTGG+CGG - chr2_2:42856003-42856022 Msa0252150:CDS 55.0%
TGACCCTTTGTTGGCGGTTC+AGG - chr2_2:42856009-42856028 Msa0252150:CDS 55.0%
CCACCTGAACCGCCAACAAA+GGG + chr2_2:42856015-42856034 None:intergenic 55.0%
CGAAGGTGAGGACAGTAAGC+GGG - chr2_2:42856038-42856057 Msa0252150:CDS 55.0%
GTAAGCGGGAGAGGAGTAAG+AGG - chr2_2:42856052-42856071 Msa0252150:CDS 55.0%
TCCAATGAGTTCGGAGAGCC+GGG + chr2_2:42857603-42857622 None:intergenic 55.0%
! TTGGTGGCTTCCCTTCCAGA+CGG - chr2_2:42857787-42857806 Msa0252150:intron 55.0%
GTAGAACTCCTCCGTCTGGA+AGG + chr2_2:42857801-42857820 None:intergenic 55.0%
AGGGCCCATGCATCAACAGA+GGG - chr2_2:42857934-42857953 Msa0252150:CDS 55.0%
GGCTTGATACTGCCCCAACA+AGG + chr2_2:42858561-42858580 None:intergenic 55.0%
GACATCCTTCTTCTCGGTGG+AGG - chr2_2:42858664-42858683 Msa0252150:intron 55.0%
GAGTGACACACCCTTTGCCT+TGG + chr2_2:42858788-42858807 None:intergenic 55.0%
CATCTGCCATCCCTGATGGT+TGG - chr2_2:42858984-42859003 Msa0252150:intron 55.0%
TGCCATCCCTGATGGTTGGA+TGG - chr2_2:42858988-42859007 Msa0252150:intron 55.0%
GCCATCCCTGATGGTTGGAT+GGG - chr2_2:42858989-42859008 Msa0252150:intron 55.0%
TCCCATCCAACCATCAGGGA+TGG + chr2_2:42858993-42859012 None:intergenic 55.0%
CCCTGATGGTTGGATGGGAT+TGG - chr2_2:42858994-42859013 Msa0252150:intron 55.0%
ACTCCTACTCGATGAAGCGG+TGG + chr2_2:42859403-42859422 None:intergenic 55.0%
CCGCTTCATCGAGTAGGAGT+TGG - chr2_2:42859403-42859422 Msa0252150:intron 55.0%
GTTGGCCGACCTTAGTGGAA+AGG - chr2_2:42859611-42859630 Msa0252150:CDS 55.0%
TGGCCGACCTTAGTGGAAAG+GGG - chr2_2:42859613-42859632 Msa0252150:CDS 55.0%
CACCCCCTTTCCACTAAGGT+CGG + chr2_2:42859619-42859638 None:intergenic 55.0%
ATGAGCCACATATCCACCGG+TGG - chr2_2:42859702-42859721 Msa0252150:CDS 55.0%
CTCCAAACTTGCACCACCAC+CGG + chr2_2:42859721-42859740 None:intergenic 55.0%
CGACTGGTGTGGCTTCATCA+AGG + chr2_2:42859779-42859798 None:intergenic 55.0%
GAGAACACTGAAACCGAGGG+TGG + chr2_2:42859836-42859855 None:intergenic 55.0%
GGGGAGGAGTGAGATGGTTG+TGG + chr2_2:42855885-42855904 None:intergenic 60.0%
! AGTGGTGGGGAGGAGTGAGA+TGG + chr2_2:42855891-42855910 None:intergenic 60.0%
AGGAGAGTTGGATGCGGGAG+GGG + chr2_2:42855943-42855962 None:intergenic 60.0%
GAGGAGAGTTGGATGCGGGA+GGG + chr2_2:42855944-42855963 None:intergenic 60.0%
TGAGGAGAGTTGGATGCGGG+AGG + chr2_2:42855945-42855964 None:intergenic 60.0%
CGCCGAGGAATGAGGAGAGT+TGG + chr2_2:42855955-42855974 None:intergenic 60.0%
CAGCTGCAGCGAAGCCAAGT+CGG + chr2_2:42855991-42856010 None:intergenic 60.0%
CGCTGCAGCTGACCCTTTGT+TGG - chr2_2:42856000-42856019 Msa0252150:exon 60.0%
CCCTTTGTTGGCGGTTCAGG+TGG - chr2_2:42856012-42856031 Msa0252150:CDS 60.0%
GCCACCTGAACCGCCAACAA+AGG + chr2_2:42856016-42856035 None:intergenic 60.0%
! TTCAGGTGGCGTCGAAGGTG+AGG - chr2_2:42856026-42856045 Msa0252150:CDS 60.0%
GTGAGGACAGTAAGCGGGAG+AGG - chr2_2:42856043-42856062 Msa0252150:CDS 60.0%
CGGGAGAGGAGTAAGAGGAG+TGG - chr2_2:42856057-42856076 Msa0252150:CDS 60.0%
GCTTGGCACCTCTTGTTCCC+CGG - chr2_2:42857582-42857601 Msa0252150:intron 60.0%
CCAATGAGTTCGGAGAGCCG+GGG + chr2_2:42857602-42857621 None:intergenic 60.0%
CAGGGCCCATGCATCAACAG+AGG - chr2_2:42857933-42857952 Msa0252150:CDS 60.0%
CCATCAGGGATGGCAGATGC+TGG + chr2_2:42858983-42859002 None:intergenic 60.0%
CCAGCATCTGCCATCCCTGA+TGG - chr2_2:42858980-42858999 Msa0252150:intron 60.0%
TGAAGACACGTCCGGACGTC+CGG - chr2_2:42859271-42859290 Msa0252150:intron 60.0%
CATGTCAGACACCGGACGTC+CGG + chr2_2:42859285-42859304 None:intergenic 60.0%
GTGCCACCGCTTCATCGAGT+AGG - chr2_2:42859397-42859416 Msa0252150:intron 60.0%
GGCCGACCTTAGTGGAAAGG+GGG - chr2_2:42859614-42859633 Msa0252150:CDS 60.0%
AGCCACATATCCACCGGTGG+TGG - chr2_2:42859705-42859724 Msa0252150:CDS 60.0%
CACCACCACCGGTGGATATG+TGG + chr2_2:42859710-42859729 None:intergenic 60.0%
CAAACTTGCACCACCACCGG+TGG + chr2_2:42859718-42859737 None:intergenic 60.0%
! CACCGGTGGTGGTGCAAGTT+TGG - chr2_2:42859716-42859735 Msa0252150:CDS 60.0%
TCATCAAGGGCGAGGACACC+TGG + chr2_2:42859765-42859784 None:intergenic 60.0%
GTGTGGCTTCATCAAGGGCG+AGG + chr2_2:42859773-42859792 None:intergenic 60.0%
GTCTTACACGGCGACTGGTG+TGG + chr2_2:42859790-42859809 None:intergenic 60.0%
!! TGGGGTGGTGGATGGGGAAG+AGG + chr2_2:42855918-42855937 None:intergenic 65.0%
!! AGGGGGATGGGGTGGTGGAT+GGG + chr2_2:42855925-42855944 None:intergenic 65.0%
TTGGATGCGGGAGGGGGATG+GGG + chr2_2:42855936-42855955 None:intergenic 65.0%
GTTGGATGCGGGAGGGGGAT+GGG + chr2_2:42855937-42855956 None:intergenic 65.0%
AGTTGGATGCGGGAGGGGGA+TGG + chr2_2:42855938-42855957 None:intergenic 65.0%
GGAGAGTTGGATGCGGGAGG+GGG + chr2_2:42855942-42855961 None:intergenic 65.0%
CGAAGCCAAGTCGGCGGAGT+GGG + chr2_2:42855982-42856001 None:intergenic 65.0%
CTGCAGCGAAGCCAAGTCGG+CGG + chr2_2:42855988-42856007 None:intergenic 65.0%
TCGGAGAGCCGGGGAACAAG+AGG + chr2_2:42857593-42857612 None:intergenic 65.0%
CCCCGGCTCTCCGAACTCAT+TGG - chr2_2:42857599-42857618 Msa0252150:intron 65.0%
GTGGCTTCCCTTCCAGACGG+AGG - chr2_2:42857790-42857809 Msa0252150:intron 65.0%
CGCCCCTGATGCAAACAGCC+AGG - chr2_2:42858843-42858862 Msa0252150:intron 65.0%
!! GGGGGATGGGGTGGTGGATG+GGG + chr2_2:42855924-42855943 None:intergenic 70.0%
!! GAGGGGGATGGGGTGGTGGA+TGG + chr2_2:42855926-42855945 None:intergenic 70.0%
AGCCAAGTCGGCGGAGTGGG+CGG + chr2_2:42855979-42855998 None:intergenic 70.0%
GCGAAGCCAAGTCGGCGGAG+TGG + chr2_2:42855983-42856002 None:intergenic 70.0%
! GGCGGTTCAGGTGGCGTCGA+AGG - chr2_2:42856021-42856040 Msa0252150:CDS 70.0%
GATGCGGGAGGGGGATGGGG+TGG + chr2_2:42855933-42855952 None:intergenic 75.0%
!! TGGGCGGGCGCCGAGGAATG+AGG + chr2_2:42855963-42855982 None:intergenic 75.0%
GCCAAGTCGGCGGAGTGGGC+GGG + chr2_2:42855978-42855997 None:intergenic 75.0%
! GCGGGAGGGGGATGGGGTGG+TGG + chr2_2:42855930-42855949 None:intergenic 80.0%
!! GCCCGCCCACTCCGCCGACT+TGG - chr2_2:42855974-42855993 Msa0252150:three_prime_UTR 80.0%
!! GGCGGAGTGGGCGGGCGCCG+AGG + chr2_2:42855970-42855989 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 42855677 42860131 42855677 ID=Msa0252150;Name=Msa0252150
chr2_2 mRNA 42855677 42860131 42855677 ID=Msa0252150-mRNA-1;Parent=Msa0252150;Name=Msa0252150-mRNA-1;_AED=0.35;_eAED=0.35;_QI=186|1|1|1|1|1|6|325|479
chr2_2 exon 42855677 42856211 42855677 ID=Msa0252150-mRNA-1:exon:13353;Parent=Msa0252150-mRNA-1
chr2_2 exon 42856676 42856834 42856676 ID=Msa0252150-mRNA-1:exon:13352;Parent=Msa0252150-mRNA-1
chr2_2 exon 42856944 42857261 42856944 ID=Msa0252150-mRNA-1:exon:13351;Parent=Msa0252150-mRNA-1
chr2_2 exon 42857803 42858063 42857803 ID=Msa0252150-mRNA-1:exon:13350;Parent=Msa0252150-mRNA-1
chr2_2 exon 42858180 42858257 42858180 ID=Msa0252150-mRNA-1:exon:13349;Parent=Msa0252150-mRNA-1
chr2_2 exon 42859532 42860131 42859532 ID=Msa0252150-mRNA-1:exon:13348;Parent=Msa0252150-mRNA-1
chr2_2 five_prime_UTR 42859946 42860131 42859946 ID=Msa0252150-mRNA-1:five_prime_utr;Parent=Msa0252150-mRNA-1
chr2_2 CDS 42859532 42859945 42859532 ID=Msa0252150-mRNA-1:cds;Parent=Msa0252150-mRNA-1
chr2_2 CDS 42858180 42858257 42858180 ID=Msa0252150-mRNA-1:cds;Parent=Msa0252150-mRNA-1
chr2_2 CDS 42857803 42858063 42857803 ID=Msa0252150-mRNA-1:cds;Parent=Msa0252150-mRNA-1
chr2_2 CDS 42856944 42857261 42856944 ID=Msa0252150-mRNA-1:cds;Parent=Msa0252150-mRNA-1
chr2_2 CDS 42856676 42856834 42856676 ID=Msa0252150-mRNA-1:cds;Parent=Msa0252150-mRNA-1
chr2_2 CDS 42856002 42856211 42856002 ID=Msa0252150-mRNA-1:cds;Parent=Msa0252150-mRNA-1
chr2_2 three_prime_UTR 42855677 42856001 42855677 ID=Msa0252150-mRNA-1:three_prime_utr;Parent=Msa0252150-mRNA-1
Gene Sequence

>Msa0252150

ATGGCTTCAGCTACAGCCCCCACAACCATCTCACTCCTCCCCACCACTAAATCCTCTTCCCCATCCACCACCCCATCCCCCTCCCGCATCCAACTCTCCTCATTCCTCGGCGCCCGCCCACTCCGCCGACTTGGCTTCGCTGCAGCTGACCCTTTGTTGGCGGTTCAGGTGGCGTCGAAGGTGAGGACAGTAAGCGGGAGAGGAGTAAGAGGAGTGGTGTCGATGGCGAAGAAGAGTGTTGGAGATTTGAGTGGGGCGGAGTTAAAAGGAAAGAAAGTGTTTGTGAGAGCTGACTTGAATGTTCCTCTTGATGATAATCAGAATATTACTGATGATACTAGGATCCGTGCTGCGATTCCAACTATTAAATATCTAATTCAGAATGGTGCTAAAGTCATTCTTTCTAGCCATTTGGGAAGGCCAAAGGGTGTCACTCCCAAATACAGCTTGGCACCTCTTGTTCCCCGGCTCTCCGAACTCATTGGAATCGAGGTTATTAAGGCCGAAGACAGTATTGGTCCAGAAGTAGAGAAGTTGGTGGCTTCCCTTCCAGACGGAGGAGTTCTACTTCTTGAAAATGTGAGGTTTTACAAGGAGGAAGAAAAGAATGATCCTGAACATGCAAAAAAGCTTGCCGCACTCGCAGATCTGTATGTGAATGATGCATTCGGTACTGCTCACAGGGCCCATGCATCAACAGAGGGAGTCACTAAATATTTGAAGCCATCTGTTGCCGGTTTTCTTTTGCAAAAGGAACTTGACTACCTTGTTGGGGCAGTATCAAGCCCAAAAAGGCCATTTGCTGCAATTGTGGGTGGTTCCAAGGTCTCATCTAAAATTGGAGTGATTGAGTCACTTCTAGAAAAAGTTGACATCCTTCTTCTCGGTGGAGGAATGATCTTCACATTTTACAAGGCACAAGGTCTTGCAGTTGGTTCATCCCTTGTAGAGGAAGATAAGTTGGATCTTGCTACAACACTAATTGCTAAAGCCAAGGCAAAGGGTGTGTCACTCTTGCTGCCAAGTGATGTGGTGATTGCAGACAAATTCGCCCCTGATGCAAACAGCCAGATCGTGCCAGCATCTGCCATCCCTGATGGTTGGATGGGATTGGACATCGGTCCAGATTCTATTAAAACATTCAATGAAGCATTGGATACCACCCAAACCATCATATGGAATGGACCAATGGGAGTGTTTGAGTTTGACAAGTTTGCTGTTGGAACAGAGTCTATTGCAAAGAAGTTGGCCGACCTTAGTGGAAAGGGGGTGACAACTATTATTGGAGGAGGAGATTCTGTTGCAGCTGTGGAGAAAGTAGGAGTTGCCGATGTCATGAGCCACATATCCACCGGTGGTGGTGCAAGTTTGGAGCTATTGGAAGGCAAAGAGCTTCCAGGTGTCCTCGCCCTTGATGAAGCCACACCAGTCGCCGTGTAA
Protein sequence

>Msa0252150

MASATAPTTISLLPTTKSSSPSTTPSPSRIQLSSFLGARPLRRLGFAAADPLLAVQVASKVRTVSGRGVRGVVSMAKKSVGDLSGAELKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKYLIQNGAKVILSSHLGRPKGVTPKYSLAPLVPRLSELIGIEVIKAEDSIGPEVEKLVASLPDGGVLLLENVRFYKEEEKNDPEHAKKLAALADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLEKVDILLLGGGMIFTFYKAQGLAVGSSLVEEDKLDLATTLIAKAKAKGVSLLLPSDVVIADKFAPDANSQIVPASAIPDGWMGLDIGPDSIKTFNEALDTTQTIIWNGPMGVFEFDKFAVGTESIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVLALDEATPVAV*