AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0617040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0617040 MtrunA17_Chr8g0376561 98.081 469 9 0 1 469 1 469 0.0 957
Msa0617040 MtrunA17_Chr7g0233361 34.625 413 248 9 33 438 68 465 5.21e-64 214
Msa0617040 MtrunA17_Chr7g0244421 30.864 405 243 13 44 424 75 466 1.44e-46 168
Msa0617040 MtrunA17_Chr8g0382871 29.821 446 267 16 26 443 54 481 1.56e-46 167
Msa0617040 MtrunA17_Chr4g0038831 26.714 423 249 13 52 427 81 489 2.68e-36 140
Msa0617040 MtrunA17_Chr3g0145711 30.671 313 192 8 52 352 76 375 2.63e-33 131
Msa0617040 MtrunA17_Chr4g0072721 26.383 235 156 7 218 437 587 819 4.79e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0617040 AT5G46180.1 72.581 434 118 1 36 469 43 475 0.0 681
Msa0617040 AT1G80600.1 33.333 411 258 7 30 436 55 453 7.57e-65 216
Msa0617040 AT4G39660.1 29.882 425 255 14 44 443 70 476 2.32e-46 167
Msa0617040 AT4G39660.2 29.904 418 250 14 51 443 2 401 1.42e-45 164
Msa0617040 AT2G38400.1 29.873 395 243 10 52 424 80 462 3.29e-44 162
Msa0617040 AT2G38400.2 29.620 395 244 10 52 424 80 462 3.36e-44 162
Msa0617040 AT3G08860.1 28.924 446 269 15 21 437 49 475 6.97e-44 161
Msa0617040 AT3G08860.2 29.099 433 263 14 21 424 49 466 1.19e-43 160
Msa0617040 AT3G22200.1 28.947 418 247 14 52 427 70 479 4.82e-37 142
Msa0617040 AT3G22200.2 28.947 418 247 14 52 427 79 488 5.90e-37 142
Msa0617040 AT5G63570.2 29.814 322 200 9 52 360 19 327 4.19e-31 124
Msa0617040 AT5G63570.1 29.814 322 200 9 52 360 82 390 7.21e-31 124
Msa0617040 AT3G48730.1 29.193 322 202 9 52 360 80 388 2.27e-28 117

Find 131 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGCATAGCTGCATTTATTT+TGG 0.157532 4_2:+67352930 Msa0617040:CDS
GGCCATCTTAAAGTTGATTT+TGG 0.199551 4_2:+67352757 Msa0617040:CDS
TTAAGATGGCCTGGCATTAA+AGG 0.213274 4_2:-67352745 None:intergenic
GCTGGAGGAGCAGCATCTTT+TGG 0.213355 4_2:-67356624 None:intergenic
AATCATCAACACGTTATATT+TGG 0.227981 4_2:-67354178 None:intergenic
ATATGAATGAATGTGTAATA+AGG 0.263883 4_2:-67351213 None:intergenic
TAGACCAGGCATTCATTATC+TGG 0.272689 4_2:-67356693 None:intergenic
TTAATTTCATAAATATGATA+TGG 0.296649 4_2:-67356805 None:intergenic
GAAAGTTTGTCCCCTGTATC+AGG 0.309360 4_2:+67355992 Msa0617040:CDS
AATGAAGCTACCCGTGGTTT+TGG 0.314723 4_2:+67352721 Msa0617040:CDS
ATTCTTTGTCAATGATTGTT+TGG 0.317700 4_2:-67351383 None:intergenic
TATGAATGAATGTGTAATAA+GGG 0.327609 4_2:-67351212 None:intergenic
CGCACCTCCTTCACATGGTC+CGG 0.342009 4_2:-67355932 None:intergenic
CGAGAAGCTCACCTCCCATT+TGG 0.348974 4_2:-67355880 None:intergenic
CTTAATTCAAAGCCTGATAC+AGG 0.361779 4_2:-67356004 None:intergenic
TCTGCAAGAACTGCGCTAAC+TGG 0.362917 4_2:-67355024 None:intergenic
TACAGAGGAACCAGAACTTT+TGG 0.363782 4_2:+67351327 Msa0617040:CDS
TCATGTTGTGGCTGCTTCAA+TGG 0.367473 4_2:+67352664 Msa0617040:CDS
CATAGTTATACCTCATTGTT+GGG 0.368104 4_2:-67352414 None:intergenic
TTCTTTGTCAATGATTGTTT+GGG 0.376263 4_2:-67351382 None:intergenic
AGCCTTGTTTGGTTATGATA+TGG 0.380865 4_2:+67352308 Msa0617040:CDS
TGGCTACTCTGCAGTTAATC+AGG 0.391203 4_2:+67351822 Msa0617040:CDS
TGTGGCAACACCAAAAGTTC+TGG 0.395603 4_2:-67351337 None:intergenic
GAACCTATCCAAGGGGAAGC+TGG 0.400196 4_2:+67352952 Msa0617040:CDS
TCATAGTTATACCTCATTGT+TGG 0.402470 4_2:-67352415 None:intergenic
TCAATATATTTGTTTCCCTC+TGG 0.406966 4_2:-67351790 None:intergenic
CGAGGGCCTTAGAACCTTGT+TGG 0.409141 4_2:-67356557 None:intergenic
TGAGATCCAACAAGGTTCTA+AGG 0.410990 4_2:+67356551 Msa0617040:CDS
ACAGCTTTCAAATAACCATC+TGG 0.413613 4_2:-67354141 None:intergenic
GAGAAGCTCACCTCCCATTT+GGG 0.418819 4_2:-67355879 None:intergenic
TGCTTCAATGGTCGTACATT+GGG 0.424592 4_2:+67352676 Msa0617040:CDS
AAAGATGCTGCTCCTCCAGC+TGG 0.425140 4_2:+67356627 Msa0617040:CDS
TCAGATACTAGGGAAAGCTT+TGG 0.426949 4_2:+67354987 Msa0617040:intron
GAGTATTTGACAGCCTTGTT+TGG 0.427807 4_2:+67352297 Msa0617040:CDS
TCTTAAAGCTTTAAAAGATC+AGG 0.428054 4_2:+67352215 Msa0617040:CDS
TTTGCATGAGCAAATACAAT+AGG 0.428807 4_2:-67351748 None:intergenic
CAGATACTAGGGAAAGCTTT+GGG 0.440625 4_2:+67354988 Msa0617040:intron
TGAACACCAACCACTACATC+TGG 0.440669 4_2:-67354270 None:intergenic
CCTTCAGCACCAGTATTCAT+AGG 0.441808 4_2:-67352336 None:intergenic
GTGAAGGAGGTGCGGGGAAG+AGG 0.443048 4_2:+67355941 Msa0617040:CDS
TAAGGCCCTCGCTGATGTGC+TGG 0.445290 4_2:+67356569 Msa0617040:CDS
CGTTGTGGTCGAGTCGTGTA+TGG 0.450567 4_2:+67356666 Msa0617040:CDS
ATTGCTGATGAAATACAAAC+TGG 0.456192 4_2:+67354198 Msa0617040:CDS
CGGGGAAGAGGACTGTTCAT+TGG 0.461273 4_2:+67355953 Msa0617040:CDS
AACCTATCCAAGGGGAAGCT+GGG 0.467176 4_2:+67352953 Msa0617040:CDS
ATTGTATTTGCTCATGCAAA+GGG 0.473811 4_2:+67351751 Msa0617040:CDS
GGACCATGTGAAGGAGGTGC+GGG 0.476342 4_2:+67355934 Msa0617040:CDS
CAAACTGGATTAGCAAGAAC+AGG 0.479961 4_2:+67354213 Msa0617040:CDS
ATTGGACAGATCTACCCAAA+TGG 0.483780 4_2:+67355865 Msa0617040:intron
CTAGGGAAAGCTTTGGGTGG+AGG 0.491794 4_2:+67354994 Msa0617040:CDS
TTAAACCTTCCATGCTGTCC+AGG 0.491922 4_2:-67355072 None:intergenic
CTTTAAAAGATCAGGCAGAC+AGG 0.501503 4_2:+67352223 Msa0617040:CDS
CAAATGGGAGGTGAGCTTCT+CGG 0.504493 4_2:+67355881 Msa0617040:CDS
AACATACCCCAGCTTCCCCT+TGG 0.504988 4_2:-67352960 None:intergenic
CGTTGAAGTTAGCAAGAAAG+TGG 0.505236 4_2:+67352370 Msa0617040:CDS
CCACAACGATCACATGCACT+AGG 0.505325 4_2:-67356651 None:intergenic
CTGCTTCAATGGTCGTACAT+TGG 0.506187 4_2:+67352675 Msa0617040:CDS
TTGGGAAGATGAAGAAGCGT+TGG 0.508848 4_2:-67351364 None:intergenic
TTTCTTACCTTATGCACAGT+GGG 0.509433 4_2:-67356093 None:intergenic
ATGGCAACTGCACTGGCCAA+TGG 0.511220 4_2:-67355591 None:intergenic
TGAGGCAATGGCAACTGCAC+TGG 0.516585 4_2:-67355598 None:intergenic
CACCAAAATCAACTTTAAGA+TGG 0.516646 4_2:-67352759 None:intergenic
TATTGTATTTGCTCATGCAA+AGG 0.517613 4_2:+67351750 Msa0617040:CDS
GCTCTTATTGTCTCATGTTG+TGG 0.519417 4_2:+67352652 Msa0617040:CDS
AAATCAACTTTAAGATGGCC+TGG 0.519591 4_2:-67352754 None:intergenic
TTACACATAACATCAATCAA+TGG 0.520997 4_2:+67351266 Msa0617040:exon
TCACATGCACTAGGGCCAGC+TGG 0.522239 4_2:-67356642 None:intergenic
CAGCTTTCAAATAACCATCT+GGG 0.525779 4_2:-67354140 None:intergenic
TTGGACAGATCTACCCAAAT+GGG 0.526655 4_2:+67355866 Msa0617040:intron
TGAGCAAATACAATAGGAAG+TGG 0.526855 4_2:-67351742 None:intergenic
ATGATGATGTAAATCAAAGT+TGG 0.528709 4_2:-67351243 None:intergenic
ATGGTACTTCCTATGAATAC+TGG 0.531481 4_2:+67352327 Msa0617040:CDS
GCACCTCCTTCACATGGTCC+GGG 0.537138 4_2:-67355931 None:intergenic
TGCAAAGGGATCAGCTGTGT+GGG 0.540779 4_2:+67351765 Msa0617040:CDS
TTCTTTGATCACTTCAAGTG+AGG 0.543995 4_2:-67355616 None:intergenic
TTAACCAGATAATGAATGCC+TGG 0.546110 4_2:+67356689 Msa0617040:exon
TGGGAAGATGAAGAAGCGTT+GGG 0.548907 4_2:-67351363 None:intergenic
GATCACTTCAAGTGAGGCAA+TGG 0.551674 4_2:-67355610 None:intergenic
TGGTTAGAAATAGACAGCAC+TGG 0.552720 4_2:-67356861 None:intergenic
AATTGTGTCATGTGTTGACT+TGG 0.561328 4_2:-67356056 None:intergenic
TTCCCCGCACCTCCTTCACA+TGG 0.564937 4_2:-67355937 None:intergenic
ATCAGCTGTGTGGGATCCAG+AGG 0.565766 4_2:+67351774 Msa0617040:CDS
TGTATAAAACCTGGACAGCA+TGG 0.573539 4_2:+67355063 Msa0617040:CDS
CAAATACAATAGGAAGTGGA+TGG 0.580722 4_2:-67351738 None:intergenic
ATGAATGAATGTGTAATAAG+GGG 0.581962 4_2:-67351211 None:intergenic
GTCAAATACTCAGCAAACAC+CGG 0.582762 4_2:-67352285 None:intergenic
GAATACTGGTGCTGAAGGTG+TGG 0.583184 4_2:+67352341 Msa0617040:CDS
TAAAACCTGGACAGCATGGA+AGG 0.583742 4_2:+67355067 Msa0617040:CDS
ACCCCAGCTTCCCCTTGGAT+AGG 0.586113 4_2:-67352955 None:intergenic
ACCTATCCAAGGGGAAGCTG+GGG 0.586910 4_2:+67352954 Msa0617040:CDS
ACTGGGAATAAGTGATCTCA+AGG 0.588655 4_2:-67356843 None:intergenic
AATGAATGTGTAATAAGGGG+AGG 0.597963 4_2:-67351208 None:intergenic
AGCTTTCAAATAACCATCTG+GGG 0.599511 4_2:-67354139 None:intergenic
GTGATGCTTTGTATAAAACC+TGG 0.600068 4_2:+67355054 Msa0617040:CDS
CGGACCATGTGAAGGAGGTG+CGG 0.603381 4_2:+67355933 Msa0617040:CDS
GGTTAGAAATAGACAGCACT+GGG 0.604578 4_2:-67356860 None:intergenic
TAATTCAAAGCCTGATACAG+GGG 0.605478 4_2:-67356002 None:intergenic
GTTGAAGTTAGCAAGAAAGT+GGG 0.607885 4_2:+67352371 Msa0617040:CDS
TTAATTCAAAGCCTGATACA+GGG 0.608427 4_2:-67356003 None:intergenic
AGAAGTTCGTCCAGATGTAG+TGG 0.615199 4_2:+67354260 Msa0617040:CDS
TGAAGAAGCGTTGGGTTGTG+TGG 0.618995 4_2:-67351355 None:intergenic
CACAACGATCACATGCACTA+GGG 0.624398 4_2:-67356650 None:intergenic
ATGAATGTGTAATAAGGGGA+GGG 0.624570 4_2:-67351207 None:intergenic
AATTTCCAGCACATCAGCGA+GGG 0.626318 4_2:-67356574 None:intergenic
GACCATGTGAAGGAGGTGCG+GGG 0.627725 4_2:+67355935 Msa0617040:CDS
GCATTAAAGGACCAAAACCA+CGG 0.628989 4_2:-67352732 None:intergenic
TACCATATCATAACCAAACA+AGG 0.631313 4_2:-67352310 None:intergenic
ATGCAAAGGGATCAGCTGTG+TGG 0.641631 4_2:+67351764 Msa0617040:CDS
ACAATACCCGGACCATGTGA+AGG 0.644513 4_2:+67355925 Msa0617040:CDS
GCTTTCAAATAACCATCTGG+GGG 0.649011 4_2:-67354138 None:intergenic
TCTTACCTTATGCACAGTGG+GGG 0.652538 4_2:-67356091 None:intergenic
CTTTCTTACCTTATGCACAG+TGG 0.652810 4_2:-67356094 None:intergenic
CATTAAAGGACCAAAACCAC+GGG 0.654497 4_2:-67352731 None:intergenic
CCTATGAATACTGGTGCTGA+AGG 0.655355 4_2:+67352336 Msa0617040:CDS
TTCTTACCTTATGCACAGTG+GGG 0.660148 4_2:-67356092 None:intergenic
GAAGATTCAGAAACAATACC+CGG 0.661569 4_2:+67355913 Msa0617040:CDS
GACAGATCTACCCAAATGGG+AGG 0.666226 4_2:+67355869 Msa0617040:intron
ATACTAGGGAAAGCTTTGGG+TGG 0.669588 4_2:+67354991 Msa0617040:CDS
CCAAAATAAATGCAGCTATG+CGG 0.671952 4_2:-67352930 None:intergenic
AGATCAGGCAGACAGGCTGA+CGG 0.672284 4_2:+67352230 Msa0617040:CDS
CATGCACTAGGGCCAGCTGG+AGG 0.674851 4_2:-67356639 None:intergenic
ATACCCGGACCATGTGAAGG+AGG 0.676758 4_2:+67355928 Msa0617040:CDS
TCAGCTGTGTGGGATCCAGA+GGG 0.679081 4_2:+67351775 Msa0617040:CDS
AAGAAGAGAGACTTGCTGAG+AGG 0.679464 4_2:+67355634 Msa0617040:CDS
TGTGACAATGAAGCTACCCG+TGG 0.679963 4_2:+67352715 Msa0617040:CDS
CCTAGTGCATGTGATCGTTG+TGG 0.687700 4_2:+67356651 Msa0617040:CDS
TTGAAGTTAGCAAGAAAGTG+GGG 0.692526 4_2:+67352372 Msa0617040:CDS
AGTGCGGATGAGATCCAACA+AGG 0.696962 4_2:+67356543 Msa0617040:intron
CTTTCAAATAACCATCTGGG+GGG 0.711042 4_2:-67354137 None:intergenic
CAATTTCCAGCACATCAGCG+AGG 0.712817 4_2:-67356575 None:intergenic
CTTTCTTGCTAACTTCAACG+CGG 0.721978 4_2:-67352367 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTAGTTTAATATATGA+AGG - chr4_2:67351527-67351546 None:intergenic 10.0%
!!! AAATATATTGATTTTTTATC+TGG + chr4_2:67351802-67351821 Msa0617040:CDS 10.0%
!!! TTTTTTATTCCTTAATTTTT+GGG + chr4_2:67352117-67352136 Msa0617040:intron 10.0%
!!! AAAAGTATTCTTTTTTTTTT+TGG - chr4_2:67353014-67353033 None:intergenic 10.0%
!! AATATTAATGTTATGAAAAA+TGG + chr4_2:67353968-67353987 Msa0617040:intron 10.0%
!! ATATTAATGTTATGAAAAAT+GGG + chr4_2:67353969-67353988 Msa0617040:intron 10.0%
!!! ATTTTAATGAATGAAATTAT+CGG - chr4_2:67355480-67355499 None:intergenic 10.0%
!! AATTAATTGTTTATTAAAGA+AGG + chr4_2:67355502-67355521 Msa0617040:intron 10.0%
!! TTGAATAAATTTATTTCATT+AGG + chr4_2:67355700-67355719 Msa0617040:intron 10.0%
!! TTAATTTCATAAATATGATA+TGG - chr4_2:67356808-67356827 None:intergenic 10.0%
!!! TTTTCTTATATTATTATCAC+CGG + chr4_2:67351937-67351956 Msa0617040:intron 15.0%
!! CAAAAATTAAGGAATAAAAA+AGG - chr4_2:67352118-67352137 None:intergenic 15.0%
!!! CTTTTTTATTCCTTAATTTT+TGG + chr4_2:67352116-67352135 Msa0617040:intron 15.0%
!!! TTTAAAGCTTTAAGAATTTT+AGG - chr4_2:67352210-67352229 None:intergenic 15.0%
!! ATAAGAATAGAAAATAGAAT+CGG - chr4_2:67353310-67353329 None:intergenic 15.0%
!! AAACTATTATACTTCATAAA+TGG - chr4_2:67353804-67353823 None:intergenic 15.0%
!! AATAAAAAAAATCAGTTTGA+CGG - chr4_2:67353940-67353959 None:intergenic 15.0%
!! TCTGAACTTAAATTATTAAA+AGG - chr4_2:67354415-67354434 None:intergenic 15.0%
!!! TTTTAATAATTTAAGTTCAG+AGG + chr4_2:67354414-67354433 Msa0617040:intron 15.0%
!! TACAGAATAAAAAAGAAAAA+GGG - chr4_2:67354907-67354926 None:intergenic 15.0%
!! TTACAGAATAAAAAAGAAAA+AGG - chr4_2:67354908-67354927 None:intergenic 15.0%
!! AAAAATAAATAACCATTACA+AGG - chr4_2:67355381-67355400 None:intergenic 15.0%
!! TATGAATGAATGTGTAATAA+GGG - chr4_2:67351215-67351234 None:intergenic 20.0%
!! ATATGAATGAATGTGTAATA+AGG - chr4_2:67351216-67351235 None:intergenic 20.0%
!! TTAATCAGGTATAAATTGAA+CGG + chr4_2:67351836-67351855 Msa0617040:intron 20.0%
!! ATCAAGATATTACAACTATT+AGG - chr4_2:67352452-67352471 None:intergenic 20.0%
!! TCTCATTTAAAAAATCCAAA+TGG - chr4_2:67352576-67352595 None:intergenic 20.0%
!!! TGGATTTTTTAAATGAGATT+CGG + chr4_2:67352578-67352597 Msa0617040:intron 20.0%
!! ATAGAAAATAGAATCAGTTA+GGG - chr4_2:67353304-67353323 None:intergenic 20.0%
!! AATAGAAAATAGAATCAGTT+AGG - chr4_2:67353305-67353324 None:intergenic 20.0%
!! ATTCTGTTATTATGAAATGT+TGG + chr4_2:67353565-67353584 Msa0617040:intron 20.0%
!! CATACATAATATTACATTCT+CGG - chr4_2:67353831-67353850 None:intergenic 20.0%
!! TAACGTCATATAAAAAAATG+TGG - chr4_2:67354096-67354115 None:intergenic 20.0%
!!! ATGACGTTATATTTTTTTAC+AGG + chr4_2:67354107-67354126 Msa0617040:intron 20.0%
!! AGGAAAAACTAGATATAATA+TGG - chr4_2:67354698-67354717 None:intergenic 20.0%
!! AAGAAATTAGTGGTATAAAA+AGG - chr4_2:67354952-67354971 None:intergenic 20.0%
!! AAGAAAGTTAAAGAAATTAG+TGG - chr4_2:67354962-67354981 None:intergenic 20.0%
!!! TTTGATTTGATTAAGTTGAA+AGG + chr4_2:67355279-67355298 Msa0617040:intron 20.0%
!! TTAAAAAAAAATCCATCCTA+TGG + chr4_2:67355399-67355418 Msa0617040:intron 20.0%
!! TAAAAAAAAATCCATCCTAT+GGG + chr4_2:67355400-67355419 Msa0617040:intron 20.0%
!! GAAAAGTAACAGAAAAAAAA+AGG - chr4_2:67355551-67355570 None:intergenic 20.0%
!! TGAATTAAGTGAAAAATTGA+AGG + chr4_2:67356018-67356037 Msa0617040:CDS 20.0%
!! TATAGTGAAAAATGAAAACA+AGG - chr4_2:67356265-67356284 None:intergenic 20.0%
!! AATTATTGAAATTGAAAGCT+AGG + chr4_2:67356290-67356309 Msa0617040:intron 20.0%
!!! AAGCATTATTTCTTTTATCT+AGG - chr4_2:67356414-67356433 None:intergenic 20.0%
!!! TTTTATAAAATTCATAGACC+AGG - chr4_2:67356710-67356729 None:intergenic 20.0%
!!! ACTTATATTTTACTTTTGCT+TGG + chr4_2:67356729-67356748 Msa0617040:three_prime_UTR 20.0%
!! TGAAATTAAAAAATGTCACT+AGG + chr4_2:67356819-67356838 Msa0617040:three_prime_UTR 20.0%
! ATGAATGAATGTGTAATAAG+GGG - chr4_2:67351214-67351233 None:intergenic 25.0%
!! ATGATGATGTAAATCAAAGT+TGG - chr4_2:67351246-67351265 None:intergenic 25.0%
! TTACACATAACATCAATCAA+TGG + chr4_2:67351266-67351285 Msa0617040:exon 25.0%
! TTCTTTGTCAATGATTGTTT+GGG - chr4_2:67351385-67351404 None:intergenic 25.0%
! ATTCTTTGTCAATGATTGTT+TGG - chr4_2:67351386-67351405 None:intergenic 25.0%
!!! AAAGACACCATTTTTATTTC+TGG + chr4_2:67351464-67351483 Msa0617040:intron 25.0%
!!! AAGACACCATTTTTATTTCT+GGG + chr4_2:67351465-67351484 Msa0617040:intron 25.0%
!!! TCTTTTTTTAATCACTCCAT+TGG + chr4_2:67351553-67351572 Msa0617040:intron 25.0%
!!! CTTTTTTTAATCACTCCATT+GGG + chr4_2:67351554-67351573 Msa0617040:intron 25.0%
!!! TCTTAAAGCTTTAAAAGATC+AGG + chr4_2:67352215-67352234 Msa0617040:CDS 25.0%
!!! TTGCATTTTTCAAAATTGTC+CGG + chr4_2:67352475-67352494 Msa0617040:intron 25.0%
!!! TTTTTTGTAGCTATACCATT+TGG + chr4_2:67352558-67352577 Msa0617040:intron 25.0%
!!! GTCACTTGTTTTATCTTAAA+TGG + chr4_2:67353103-67353122 Msa0617040:intron 25.0%
! ATTCTGTTATTGTGAAATGA+TGG + chr4_2:67353192-67353211 Msa0617040:intron 25.0%
!! ATCTAAGATATTGCTTATAG+AGG + chr4_2:67353227-67353246 Msa0617040:intron 25.0%
!! TCTAAGATATTGCTTATAGA+GGG + chr4_2:67353228-67353247 Msa0617040:intron 25.0%
! ATCTCAGAAATTGCTTATAT+AGG + chr4_2:67353600-67353619 Msa0617040:intron 25.0%
! TCTCAGAAATTGCTTATATA+GGG + chr4_2:67353601-67353620 Msa0617040:intron 25.0%
! ATAGAAAATAGAATCGGTAA+AGG - chr4_2:67353677-67353696 None:intergenic 25.0%
!!! AATGTACCGTTTTTGAATTT+CGG + chr4_2:67353753-67353772 Msa0617040:intron 25.0%
! AATCATCAACACGTTATATT+TGG - chr4_2:67354181-67354200 None:intergenic 25.0%
! ACAGAATATATAAGAGGTAA+AGG - chr4_2:67354296-67354315 None:intergenic 25.0%
! AGAGATACAGAATATATAAG+AGG - chr4_2:67354302-67354321 None:intergenic 25.0%
! TGGTAAAACAGAGAATATTA+TGG + chr4_2:67354596-67354615 Msa0617040:intron 25.0%
! AAAACAGAGAATATTATGGT+TGG + chr4_2:67354600-67354619 Msa0617040:intron 25.0%
!! AAAAACAAACATAAGTTGGA+TGG - chr4_2:67354846-67354865 None:intergenic 25.0%
! GTGAAAAAACAAACATAAGT+TGG - chr4_2:67354850-67354869 None:intergenic 25.0%
! TCACAAAAAAGAGAAACTTA+TGG + chr4_2:67354866-67354885 Msa0617040:intron 25.0%
!!! TTTCTTTTGATTCAGATACT+AGG + chr4_2:67354976-67354995 Msa0617040:intron 25.0%
!!! TTCTTTTGATTCAGATACTA+GGG + chr4_2:67354977-67354996 Msa0617040:intron 25.0%
! ACAAGAAAACAATAAACGAA+TGG - chr4_2:67355122-67355141 None:intergenic 25.0%
!! TAAGTTGAAAGGTTTCAAAA+AGG + chr4_2:67355290-67355309 Msa0617040:intron 25.0%
!!! GTTAGTCTTATATATTGATC+TGG + chr4_2:67355768-67355787 Msa0617040:intron 25.0%
! AACTTAAGACATTGCTTAAA+TGG - chr4_2:67356129-67356148 None:intergenic 25.0%
! TTCATAAGCATAACTAGATT+AGG - chr4_2:67356328-67356347 None:intergenic 25.0%
! AAAGATTTGATTACTGTGAA+TGG + chr4_2:67356378-67356397 Msa0617040:intron 25.0%
! GATAAAAGAAATAATGCTTC+TGG + chr4_2:67356415-67356434 Msa0617040:intron 25.0%
!! TGTAAATGTCCCTAATATTT+TGG + chr4_2:67356490-67356509 Msa0617040:intron 25.0%
! AATCCTAGACCAAAATATTA+GGG - chr4_2:67356502-67356521 None:intergenic 25.0%
! AAATCCTAGACCAAAATATT+AGG - chr4_2:67356503-67356522 None:intergenic 25.0%
!!! ATTTTACTTTTGCTTGGAAA+AGG + chr4_2:67356735-67356754 Msa0617040:three_prime_UTR 25.0%
AGGGAAAGATATATACTTGT+GGG - chr4_2:67351421-67351440 None:intergenic 30.0%
AAGGGAAAGATATATACTTG+TGG - chr4_2:67351422-67351441 None:intergenic 30.0%
AACAGAACAGAAGAAAACAA+GGG - chr4_2:67351440-67351459 None:intergenic 30.0%
!! TATGAAGGTTGATTAGCTTA+AGG - chr4_2:67351512-67351531 None:intergenic 30.0%
TTTGCATGAGCAAATACAAT+AGG - chr4_2:67351751-67351770 None:intergenic 30.0%
TATTGTATTTGCTCATGCAA+AGG + chr4_2:67351750-67351769 Msa0617040:CDS 30.0%
ATTGTATTTGCTCATGCAAA+GGG + chr4_2:67351751-67351770 Msa0617040:CDS 30.0%
TCAATATATTTGTTTCCCTC+TGG - chr4_2:67351793-67351812 None:intergenic 30.0%
TTTCTATTTCCTTTGTGAAC+TGG + chr4_2:67352046-67352065 Msa0617040:intron 30.0%
TAGCATTAGTAAACAGGATT+TGG - chr4_2:67352087-67352106 None:intergenic 30.0%
! TCGTCTTTTCCCAAAAATTA+AGG - chr4_2:67352129-67352148 None:intergenic 30.0%
!!! AGTGTATGTCATTTTTCTTC+AGG + chr4_2:67352173-67352192 Msa0617040:intron 30.0%
!!! GTGTATGTCATTTTTCTTCA+GGG + chr4_2:67352174-67352193 Msa0617040:intron 30.0%
! TTTCTACAATGATCGTTTTC+CGG + chr4_2:67352266-67352285 Msa0617040:CDS 30.0%
TACCATATCATAACCAAACA+AGG - chr4_2:67352313-67352332 None:intergenic 30.0%
GAAAAAAATTCCCAACAATG+AGG + chr4_2:67352404-67352423 Msa0617040:CDS 30.0%
CATAGTTATACCTCATTGTT+GGG - chr4_2:67352417-67352436 None:intergenic 30.0%
TCATAGTTATACCTCATTGT+TGG - chr4_2:67352418-67352437 None:intergenic 30.0%
AAGCAAATATTTAGCATCAC+CGG - chr4_2:67352497-67352516 None:intergenic 30.0%
TCAGCAAAAGTAAATTGACA+CGG - chr4_2:67352616-67352635 None:intergenic 30.0%
!! TGTCAATTTACTTTTGCTGA+TGG + chr4_2:67352616-67352635 Msa0617040:intron 30.0%
! CACCAAAATCAACTTTAAGA+TGG - chr4_2:67352762-67352781 None:intergenic 30.0%
!!! TTTATTTTGGAACCTATCCA+AGG + chr4_2:67352943-67352962 Msa0617040:CDS 30.0%
!!! TTATTTTGGAACCTATCCAA+GGG + chr4_2:67352944-67352963 Msa0617040:CDS 30.0%
CATCATACAAAGGAACATAT+TGG - chr4_2:67353045-67353064 None:intergenic 30.0%
!!! ATAGAGTTACTTTTTTCCTG+AGG + chr4_2:67353407-67353426 Msa0617040:intron 30.0%
CTTGCAAAGACTAAATCATA+TGG - chr4_2:67353449-67353468 None:intergenic 30.0%
! ATGATTTAGTCTTTGCAAGA+AGG + chr4_2:67353450-67353469 Msa0617040:intron 30.0%
CAGATATATAAGAGATATGC+TGG - chr4_2:67353715-67353734 None:intergenic 30.0%
GTAACACCGAAATTCAAAAA+CGG - chr4_2:67353762-67353781 None:intergenic 30.0%
TGTGGAAAAGATGATATGTT+TGG - chr4_2:67354078-67354097 None:intergenic 30.0%
ATTGCTGATGAAATACAAAC+TGG + chr4_2:67354198-67354217 Msa0617040:CDS 30.0%
ATGTTTATAGCGAAGTACAA+GGG - chr4_2:67354333-67354352 None:intergenic 30.0%
!! AAAGGAAGTAAGGTATCTTT+TGG - chr4_2:67354529-67354548 None:intergenic 30.0%
TGATATGGTTAAAGGAAGTA+AGG - chr4_2:67354539-67354558 None:intergenic 30.0%
GAATCGTATGATATGGTTAA+AGG - chr4_2:67354547-67354566 None:intergenic 30.0%
! CTTGTACTTTTGTGTTTTAC+TGG + chr4_2:67354576-67354595 Msa0617040:intron 30.0%
! TATTCTGTAACCTTTTTCTG+AGG + chr4_2:67354918-67354937 Msa0617040:intron 30.0%
CAATAGTTGTCAAACATAGA+AGG + chr4_2:67355142-67355161 Msa0617040:intron 30.0%
GTTAAATCAAGACATGCAAA+CGG - chr4_2:67355359-67355378 None:intergenic 30.0%
GTCTTGATTTAACCTTGTAA+TGG + chr4_2:67355366-67355385 Msa0617040:intron 30.0%
AAGAAATCAATGCAAAAGTG+AGG - chr4_2:67355444-67355463 None:intergenic 30.0%
!!! GTTACTTTTCACAGTACTTT+TGG + chr4_2:67355561-67355580 Msa0617040:intron 30.0%
TTAATTCAAAGCCTGATACA+GGG - chr4_2:67356006-67356025 None:intergenic 30.0%
AGTGAAAAATTGAAGGATAG+AGG + chr4_2:67356025-67356044 Msa0617040:CDS 30.0%
CAATGGTGAAAGTTACAAAT+AGG - chr4_2:67356179-67356198 None:intergenic 30.0%
ATTTGATTACTGTGAATGGT+AGG + chr4_2:67356382-67356401 Msa0617040:intron 30.0%
ATGAATGTGTAATAAGGGGA+GGG - chr4_2:67351210-67351229 None:intergenic 35.0%
AATGAATGTGTAATAAGGGG+AGG - chr4_2:67351211-67351230 None:intergenic 35.0%
! TTGATGCGAAGATTTTACAG+AGG + chr4_2:67351312-67351331 Msa0617040:CDS 35.0%
GAACAGAACAGAAGAAAACA+AGG - chr4_2:67351441-67351460 None:intergenic 35.0%
GAGAGACCCAGAAATAAAAA+TGG - chr4_2:67351474-67351493 None:intergenic 35.0%
TTACAATCCAAACAACCCAA+TGG - chr4_2:67351572-67351591 None:intergenic 35.0%
CAAATACAATAGGAAGTGGA+TGG - chr4_2:67351741-67351760 None:intergenic 35.0%
TGAGCAAATACAATAGGAAG+TGG - chr4_2:67351745-67351764 None:intergenic 35.0%
AACCATCTTCATTCATCTGA+GGG - chr4_2:67352016-67352035 None:intergenic 35.0%
AAACCATCTTCATTCATCTG+AGG - chr4_2:67352017-67352036 None:intergenic 35.0%
CAATAAACTCCAGTTCACAA+AGG - chr4_2:67352058-67352077 None:intergenic 35.0%
TGAACTGGAGTTTATTGTTG+TGG + chr4_2:67352061-67352080 Msa0617040:intron 35.0%
AAGCAGTAGCATTAGTAAAC+AGG - chr4_2:67352093-67352112 None:intergenic 35.0%
!! AGCCTTGTTTGGTTATGATA+TGG + chr4_2:67352308-67352327 Msa0617040:CDS 35.0%
ATGGTACTTCCTATGAATAC+TGG + chr4_2:67352327-67352346 Msa0617040:CDS 35.0%
GTTGAAGTTAGCAAGAAAGT+GGG + chr4_2:67352371-67352390 Msa0617040:CDS 35.0%
TTGAAGTTAGCAAGAAAGTG+GGG + chr4_2:67352372-67352391 Msa0617040:CDS 35.0%
!! AAATCAACTTTAAGATGGCC+TGG - chr4_2:67352757-67352776 None:intergenic 35.0%
!! GGCCATCTTAAAGTTGATTT+TGG + chr4_2:67352757-67352776 Msa0617040:CDS 35.0%
! GCACTCGAGAAAATTTTCAA+AGG + chr4_2:67352790-67352809 Msa0617040:CDS 35.0%
CCAAAATAAATGCAGCTATG+CGG - chr4_2:67352933-67352952 None:intergenic 35.0%
!!! TATTTTGGAACCTATCCAAG+GGG + chr4_2:67352945-67352964 Msa0617040:CDS 35.0%
!! TACAAGTCTTGTGACTTGTT+TGG + chr4_2:67353274-67353293 Msa0617040:intron 35.0%
! AACTAGACATCTTTTTCCTC+AGG - chr4_2:67353426-67353445 None:intergenic 35.0%
TCTATTGTGATACATGAGCA+CGG - chr4_2:67353498-67353517 None:intergenic 35.0%
!!! TACAAGTCTTGCGACTTTTT+TGG + chr4_2:67353647-67353666 Msa0617040:intron 35.0%
CAAAAACGGTACATTTCACA+TGG - chr4_2:67353748-67353767 None:intergenic 35.0%
ATTAGATCATGAACGAAAGC+CGG - chr4_2:67353894-67353913 None:intergenic 35.0%
TAATGTGAGAGCTATTCTAC+AGG - chr4_2:67354025-67354044 None:intergenic 35.0%
AGCTTTCAAATAACCATCTG+GGG - chr4_2:67354142-67354161 None:intergenic 35.0%
CAGCTTTCAAATAACCATCT+GGG - chr4_2:67354143-67354162 None:intergenic 35.0%
ACAGCTTTCAAATAACCATC+TGG - chr4_2:67354144-67354163 None:intergenic 35.0%
GATGTTTATAGCGAAGTACA+AGG - chr4_2:67354334-67354353 None:intergenic 35.0%
TTGCGAAGAATCGTATGATA+TGG - chr4_2:67354554-67354573 None:intergenic 35.0%
TGCATATTCACAGGAATAGA+AGG - chr4_2:67354718-67354737 None:intergenic 35.0%
AGTTTCTGATGCATATTCAC+AGG - chr4_2:67354727-67354746 None:intergenic 35.0%
CTAGGTAGATGCATTTAACT+AGG + chr4_2:67354801-67354820 Msa0617040:intron 35.0%
GGAAACTAAACCTCAGAAAA+AGG - chr4_2:67354931-67354950 None:intergenic 35.0%
GTGATGCTTTGTATAAAACC+TGG + chr4_2:67355054-67355073 Msa0617040:CDS 35.0%
! ACTTTTCACAGTACTTTTGG+TGG + chr4_2:67355564-67355583 Msa0617040:intron 35.0%
! TACTTTTGGTGGAAATCCAT+TGG + chr4_2:67355575-67355594 Msa0617040:CDS 35.0%
TTCTTTGATCACTTCAAGTG+AGG - chr4_2:67355619-67355638 None:intergenic 35.0%
TGCAACTGATGTCTTAGTAT+TGG + chr4_2:67355847-67355866 Msa0617040:intron 35.0%
GAAGATTCAGAAACAATACC+CGG + chr4_2:67355913-67355932 Msa0617040:CDS 35.0%
TAATTCAAAGCCTGATACAG+GGG - chr4_2:67356005-67356024 None:intergenic 35.0%
CTTAATTCAAAGCCTGATAC+AGG - chr4_2:67356007-67356026 None:intergenic 35.0%
!! AATTGTGTCATGTGTTGACT+TGG - chr4_2:67356059-67356078 None:intergenic 35.0%
TTTCTTACCTTATGCACAGT+GGG - chr4_2:67356096-67356115 None:intergenic 35.0%
TTGAGTTCACATGCACATTA+AGG + chr4_2:67356147-67356166 Msa0617040:intron 35.0%
TATAGCTAGTTGAGTACTTC+AGG + chr4_2:67356222-67356241 Msa0617040:intron 35.0%
! AATCCTTTGAGAGGACAAAA+AGG - chr4_2:67356455-67356474 None:intergenic 35.0%
! TTTTGTCCTCTCAAAGGATT+AGG + chr4_2:67356455-67356474 Msa0617040:intron 35.0%
AAGTAACCTAATCCTTTGAG+AGG - chr4_2:67356464-67356483 None:intergenic 35.0%
!!! TGTCCCTAATATTTTGGTCT+AGG + chr4_2:67356496-67356515 Msa0617040:intron 35.0%
TAAAAGTAATCCTTGCAGTG+CGG + chr4_2:67356527-67356546 Msa0617040:intron 35.0%
!!! GGCTTCATCTTTTTCAACAT+TGG - chr4_2:67356606-67356625 None:intergenic 35.0%
TTAACCAGATAATGAATGCC+TGG + chr4_2:67356689-67356708 Msa0617040:exon 35.0%
! TACAGAGGAACCAGAACTTT+TGG + chr4_2:67351327-67351346 Msa0617040:CDS 40.0%
! AATCACTCCATTGGGTTGTT+TGG + chr4_2:67351562-67351581 Msa0617040:intron 40.0%
ACGGATCTTGCTAATTACCA+AGG + chr4_2:67351855-67351874 Msa0617040:intron 40.0%
GTCATTCCGGTCTAAATTGT+CGG - chr4_2:67351893-67351912 None:intergenic 40.0%
! AACATGTGTCAGTGTCATTC+CGG - chr4_2:67351906-67351925 None:intergenic 40.0%
! CTTTAAAAGATCAGGCAGAC+AGG + chr4_2:67352223-67352242 Msa0617040:CDS 40.0%
GTCAAATACTCAGCAAACAC+CGG - chr4_2:67352288-67352307 None:intergenic 40.0%
!! GAGTATTTGACAGCCTTGTT+TGG + chr4_2:67352297-67352316 Msa0617040:CDS 40.0%
CTTTCTTGCTAACTTCAACG+CGG - chr4_2:67352370-67352389 None:intergenic 40.0%
CGTTGAAGTTAGCAAGAAAG+TGG + chr4_2:67352370-67352389 Msa0617040:CDS 40.0%
AACATGAGACAATAAGAGCC+TGG - chr4_2:67352651-67352670 None:intergenic 40.0%
GCTCTTATTGTCTCATGTTG+TGG + chr4_2:67352652-67352671 Msa0617040:CDS 40.0%
TGCTTCAATGGTCGTACATT+GGG + chr4_2:67352676-67352695 Msa0617040:CDS 40.0%
CATTAAAGGACCAAAACCAC+GGG - chr4_2:67352734-67352753 None:intergenic 40.0%
GCATTAAAGGACCAAAACCA+CGG - chr4_2:67352735-67352754 None:intergenic 40.0%
TTAAGATGGCCTGGCATTAA+AGG - chr4_2:67352748-67352767 None:intergenic 40.0%
! CCGCATAGCTGCATTTATTT+TGG + chr4_2:67352930-67352949 Msa0617040:CDS 40.0%
CTATGCGGTACATCATACAA+AGG - chr4_2:67353055-67353074 None:intergenic 40.0%
GTTAGACAACGAGTTCTATG+CGG - chr4_2:67353070-67353089 None:intergenic 40.0%
TAGAAACCTGCTAGGTTTCA+GGG - chr4_2:67353365-67353384 None:intergenic 40.0%
CTCTAATCTAGAAACCTGCT+AGG - chr4_2:67353373-67353392 None:intergenic 40.0%
! TTAGTCTTTGCAAGAAGGAC+TGG + chr4_2:67353455-67353474 Msa0617040:intron 40.0%
CTTTCAAATAACCATCTGGG+GGG - chr4_2:67354140-67354159 None:intergenic 40.0%
GCTTTCAAATAACCATCTGG+GGG - chr4_2:67354141-67354160 None:intergenic 40.0%
!! CAAACTGGATTAGCAAGAAC+AGG + chr4_2:67354213-67354232 Msa0617040:CDS 40.0%
AGCAAGAACAGGAAAAATGC+TGG + chr4_2:67354224-67354243 Msa0617040:CDS 40.0%
!! AAAAATGCTGGCTTGTGAGT+GGG + chr4_2:67354236-67354255 Msa0617040:CDS 40.0%
AGCTTGAAACTGACACTACA+TGG + chr4_2:67354473-67354492 Msa0617040:intron 40.0%
GACACTACATGGCAAGAAAT+AGG + chr4_2:67354484-67354503 Msa0617040:intron 40.0%
CTTGTCTGAGTCTTAGTCAA+TGG + chr4_2:67354745-67354764 Msa0617040:intron 40.0%
TGCATTTAACTAGGTACCAC+TGG + chr4_2:67354810-67354829 Msa0617040:intron 40.0%
! CAAACATAAGTTGGATGGTC+AGG - chr4_2:67354841-67354860 None:intergenic 40.0%
TCAGATACTAGGGAAAGCTT+TGG + chr4_2:67354987-67355006 Msa0617040:intron 40.0%
CAGATACTAGGGAAAGCTTT+GGG + chr4_2:67354988-67355007 Msa0617040:intron 40.0%
TGTATAAAACCTGGACAGCA+TGG + chr4_2:67355063-67355082 Msa0617040:CDS 40.0%
AGACCAATCAAGGGGTTTAA+GGG - chr4_2:67355190-67355209 None:intergenic 40.0%
AAGACCAATCAAGGGGTTTA+AGG - chr4_2:67355191-67355210 None:intergenic 40.0%
!! AAACCCCTTGATTGGTCTTA+TGG + chr4_2:67355192-67355211 Msa0617040:intron 40.0%
ACACCATAAGACCAATCAAG+GGG - chr4_2:67355198-67355217 None:intergenic 40.0%
CACACCATAAGACCAATCAA+GGG - chr4_2:67355199-67355218 None:intergenic 40.0%
TCACACCATAAGACCAATCA+AGG - chr4_2:67355200-67355219 None:intergenic 40.0%
AACAAAACTCCACCTTCTGT+TGG + chr4_2:67355227-67355246 Msa0617040:intron 40.0%
AGACTTCTGATTCCAACAGA+AGG - chr4_2:67355242-67355261 None:intergenic 40.0%
TTTGTGAATCCTTGTGTCCA+TGG + chr4_2:67355333-67355352 Msa0617040:intron 40.0%
TTTCACTAGTTCCCATAGGA+TGG - chr4_2:67355414-67355433 None:intergenic 40.0%
GCAATTTCACTAGTTCCCAT+AGG - chr4_2:67355418-67355437 None:intergenic 40.0%
CATCGATATCTCAAAGAGAG+TGG - chr4_2:67355818-67355837 None:intergenic 40.0%
ATTGGACAGATCTACCCAAA+TGG + chr4_2:67355865-67355884 Msa0617040:intron 40.0%
TTGGACAGATCTACCCAAAT+GGG + chr4_2:67355866-67355885 Msa0617040:intron 40.0%
TTCTTACCTTATGCACAGTG+GGG - chr4_2:67356095-67356114 None:intergenic 40.0%
CTTTCTTACCTTATGCACAG+TGG - chr4_2:67356097-67356116 None:intergenic 40.0%
! CATCCTTTTTGTCCTCTCAA+AGG + chr4_2:67356449-67356468 Msa0617040:intron 40.0%
TGAGATCCAACAAGGTTCTA+AGG + chr4_2:67356551-67356570 Msa0617040:CDS 40.0%
TAGACCAGGCATTCATTATC+TGG - chr4_2:67356696-67356715 None:intergenic 40.0%
ACTGGGAATAAGTGATCTCA+AGG - chr4_2:67356846-67356865 None:intergenic 40.0%
TGTGGCAACACCAAAAGTTC+TGG - chr4_2:67351340-67351359 None:intergenic 45.0%
!! TGGGAAGATGAAGAAGCGTT+GGG - chr4_2:67351366-67351385 None:intergenic 45.0%
! TTGGGAAGATGAAGAAGCGT+TGG - chr4_2:67351367-67351386 None:intergenic 45.0%
TGGCTACTCTGCAGTTAATC+AGG + chr4_2:67351822-67351841 Msa0617040:CDS 45.0%
!! GTAGCACCGACAATTTAGAC+CGG + chr4_2:67351884-67351903 Msa0617040:intron 45.0%
GTCCCTCAGATGAATGAAGA+TGG + chr4_2:67352011-67352030 Msa0617040:intron 45.0%
CCTTCAGCACCAGTATTCAT+AGG - chr4_2:67352339-67352358 None:intergenic 45.0%
! CCTATGAATACTGGTGCTGA+AGG + chr4_2:67352336-67352355 Msa0617040:CDS 45.0%
! TGCTGATGGAAACTTGTTCC+AGG + chr4_2:67352630-67352649 Msa0617040:intron 45.0%
TCATGTTGTGGCTGCTTCAA+TGG + chr4_2:67352664-67352683 Msa0617040:CDS 45.0%
CTGCTTCAATGGTCGTACAT+TGG + chr4_2:67352675-67352694 Msa0617040:CDS 45.0%
! AATGAAGCTACCCGTGGTTT+TGG + chr4_2:67352721-67352740 Msa0617040:CDS 45.0%
!! GGTTTTGGTCCTTTAATGCC+AGG + chr4_2:67352736-67352755 Msa0617040:CDS 45.0%
! CCTTTTTCTGCAGTTCAGCA+GGG - chr4_2:67352907-67352926 None:intergenic 45.0%
! TCCTTTTTCTGCAGTTCAGC+AGG - chr4_2:67352908-67352927 None:intergenic 45.0%
AGAAACCTGCTAGGTTTCAG+GGG - chr4_2:67353364-67353383 None:intergenic 45.0%
CTAGAAACCTGCTAGGTTTC+AGG - chr4_2:67353366-67353385 None:intergenic 45.0%
TGTGACAGTCCATCTTTGAC+CGG + chr4_2:67353872-67353891 Msa0617040:intron 45.0%
!! GAAAAATGCTGGCTTGTGAG+TGG + chr4_2:67354235-67354254 Msa0617040:CDS 45.0%
AGAAGTTCGTCCAGATGTAG+TGG + chr4_2:67354260-67354279 Msa0617040:CDS 45.0%
TGAACACCAACCACTACATC+TGG - chr4_2:67354273-67354292 None:intergenic 45.0%
AACATCATCCTGTCGTCACA+CGG + chr4_2:67354348-67354367 Msa0617040:intron 45.0%
TTTACTAACCGTGTGACGAC+AGG - chr4_2:67354359-67354378 None:intergenic 45.0%
CCTAGCTGCATACTTGCAAA+TGG - chr4_2:67354786-67354805 None:intergenic 45.0%
CCATTTGCAAGTATGCAGCT+AGG + chr4_2:67354783-67354802 Msa0617040:intron 45.0%
!! ATACTAGGGAAAGCTTTGGG+TGG + chr4_2:67354991-67355010 Msa0617040:CDS 45.0%
TAAAACCTGGACAGCATGGA+AGG + chr4_2:67355067-67355086 Msa0617040:CDS 45.0%
TTAAACCTTCCATGCTGTCC+AGG - chr4_2:67355075-67355094 None:intergenic 45.0%
CTTCTGATTCCAACAGAAGG+TGG - chr4_2:67355239-67355258 None:intergenic 45.0%
GATCACTTCAAGTGAGGCAA+TGG - chr4_2:67355613-67355632 None:intergenic 45.0%
!! AAGAAGAGAGACTTGCTGAG+AGG + chr4_2:67355634-67355653 Msa0617040:CDS 45.0%
GAAAGTTTGTCCCCTGTATC+AGG + chr4_2:67355992-67356011 Msa0617040:CDS 45.0%
TCTTACCTTATGCACAGTGG+GGG - chr4_2:67356094-67356113 None:intergenic 45.0%
! GTACTTCAGGTTATGCGTCT+TGG + chr4_2:67356235-67356254 Msa0617040:intron 45.0%
AATTTCCAGCACATCAGCGA+GGG - chr4_2:67356577-67356596 None:intergenic 45.0%
CACAACGATCACATGCACTA+GGG - chr4_2:67356653-67356672 None:intergenic 45.0%
!! TGAAGAAGCGTTGGGTTGTG+TGG - chr4_2:67351358-67351377 None:intergenic 50.0%
ATGCAAAGGGATCAGCTGTG+TGG + chr4_2:67351764-67351783 Msa0617040:CDS 50.0%
TGCAAAGGGATCAGCTGTGT+GGG + chr4_2:67351765-67351784 Msa0617040:CDS 50.0%
!! GTCGGTGCTACATAAAGCCT+TGG - chr4_2:67351875-67351894 None:intergenic 50.0%
CGATACAGACATGCTGACAC+CGG - chr4_2:67351959-67351978 None:intergenic 50.0%
! CGGTGTCAGCATGTCTGTAT+CGG + chr4_2:67351957-67351976 Msa0617040:intron 50.0%
! GTCTGTATCGGTGCTTCGTA+AGG + chr4_2:67351969-67351988 Msa0617040:intron 50.0%
! GAATACTGGTGCTGAAGGTG+TGG + chr4_2:67352341-67352360 Msa0617040:CDS 50.0%
TGTGACAATGAAGCTACCCG+TGG + chr4_2:67352715-67352734 Msa0617040:CDS 50.0%
CCCTGCTGAACTGCAGAAAA+AGG + chr4_2:67352904-67352923 Msa0617040:intron 50.0%
AACCTATCCAAGGGGAAGCT+GGG + chr4_2:67352953-67352972 Msa0617040:CDS 50.0%
GAAACCTGCTAGGTTTCAGG+GGG - chr4_2:67353363-67353382 None:intergenic 50.0%
GAACGAAAGCCGGTCAAAGA+TGG - chr4_2:67353884-67353903 None:intergenic 50.0%
GTTCGTCCAGATGTAGTGGT+TGG + chr4_2:67354264-67354283 Msa0617040:intron 50.0%
TCTGCAAGAACTGCGCTAAC+TGG - chr4_2:67355027-67355046 None:intergenic 50.0%
CCAATCAAGGGGTTTAAGGG+CGG - chr4_2:67355187-67355206 None:intergenic 50.0%
TCAAGACATGCAAACGGCCA+TGG - chr4_2:67355353-67355372 None:intergenic 50.0%
GACAGATCTACCCAAATGGG+AGG + chr4_2:67355869-67355888 Msa0617040:intron 50.0%
GAGAAGCTCACCTCCCATTT+GGG - chr4_2:67355882-67355901 None:intergenic 50.0%
CAAATGGGAGGTGAGCTTCT+CGG + chr4_2:67355881-67355900 Msa0617040:CDS 50.0%
ACAATACCCGGACCATGTGA+AGG + chr4_2:67355925-67355944 Msa0617040:CDS 50.0%
AGTGCGGATGAGATCCAACA+AGG + chr4_2:67356543-67356562 Msa0617040:intron 50.0%
CAATTTCCAGCACATCAGCG+AGG - chr4_2:67356578-67356597 None:intergenic 50.0%
CCACAACGATCACATGCACT+AGG - chr4_2:67356654-67356673 None:intergenic 50.0%
CCTAGTGCATGTGATCGTTG+TGG + chr4_2:67356651-67356670 Msa0617040:CDS 50.0%
ATCAGCTGTGTGGGATCCAG+AGG + chr4_2:67351774-67351793 Msa0617040:CDS 55.0%
TCAGCTGTGTGGGATCCAGA+GGG + chr4_2:67351775-67351794 Msa0617040:CDS 55.0%
AGATCAGGCAGACAGGCTGA+CGG + chr4_2:67352230-67352249 Msa0617040:CDS 55.0%
GAACCTATCCAAGGGGAAGC+TGG + chr4_2:67352952-67352971 Msa0617040:CDS 55.0%
ACCTATCCAAGGGGAAGCTG+GGG + chr4_2:67352954-67352973 Msa0617040:CDS 55.0%
AACATACCCCAGCTTCCCCT+TGG - chr4_2:67352963-67352982 None:intergenic 55.0%
TTCTCCCCCTGAAACCTAGC+AGG + chr4_2:67353356-67353375 Msa0617040:intron 55.0%
CAGGTGAAAATCCCCCCAGA+TGG + chr4_2:67354126-67354145 Msa0617040:intron 55.0%
GGATGGTCAGGTCTATCCAG+TGG - chr4_2:67354829-67354848 None:intergenic 55.0%
!! CTAGGGAAAGCTTTGGGTGG+AGG + chr4_2:67354994-67355013 Msa0617040:CDS 55.0%
CCGCCCTTAAACCCCTTGAT+TGG + chr4_2:67355184-67355203 Msa0617040:intron 55.0%
TGCAAACGGCCATGGACACA+AGG - chr4_2:67355345-67355364 None:intergenic 55.0%
! ATGGCAACTGCACTGGCCAA+TGG - chr4_2:67355594-67355613 None:intergenic 55.0%
TGAGGCAATGGCAACTGCAC+TGG - chr4_2:67355601-67355620 None:intergenic 55.0%
CGAGAAGCTCACCTCCCATT+TGG - chr4_2:67355883-67355902 None:intergenic 55.0%
ATACCCGGACCATGTGAAGG+AGG + chr4_2:67355928-67355947 Msa0617040:CDS 55.0%
CGGGGAAGAGGACTGTTCAT+TGG + chr4_2:67355953-67355972 Msa0617040:CDS 55.0%
TCACTCCCCCACTGTGCATA+AGG + chr4_2:67356086-67356105 Msa0617040:CDS 55.0%
TGGATCTCATCCGCACTGCA+AGG - chr4_2:67356540-67356559 None:intergenic 55.0%
CGAGGGCCTTAGAACCTTGT+TGG - chr4_2:67356560-67356579 None:intergenic 55.0%
! GCTGGAGGAGCAGCATCTTT+TGG - chr4_2:67356627-67356646 None:intergenic 55.0%
AAAGATGCTGCTCCTCCAGC+TGG + chr4_2:67356627-67356646 Msa0617040:CDS 55.0%
CGTTGTGGTCGAGTCGTGTA+TGG + chr4_2:67356666-67356685 Msa0617040:CDS 55.0%
ACCCCAGCTTCCCCTTGGAT+AGG - chr4_2:67352958-67352977 None:intergenic 60.0%
GCACCTCCTTCACATGGTCC+GGG - chr4_2:67355934-67355953 None:intergenic 60.0%
CGCACCTCCTTCACATGGTC+CGG - chr4_2:67355935-67355954 None:intergenic 60.0%
CGGACCATGTGAAGGAGGTG+CGG + chr4_2:67355933-67355952 Msa0617040:CDS 60.0%
! GGACCATGTGAAGGAGGTGC+GGG + chr4_2:67355934-67355953 Msa0617040:CDS 60.0%
! GACCATGTGAAGGAGGTGCG+GGG + chr4_2:67355935-67355954 Msa0617040:CDS 60.0%
TTCCCCGCACCTCCTTCACA+TGG - chr4_2:67355940-67355959 None:intergenic 60.0%
TAAGGCCCTCGCTGATGTGC+TGG + chr4_2:67356569-67356588 Msa0617040:CDS 60.0%
TCACATGCACTAGGGCCAGC+TGG - chr4_2:67356645-67356664 None:intergenic 60.0%
! GTGAAGGAGGTGCGGGGAAG+AGG + chr4_2:67355941-67355960 Msa0617040:CDS 65.0%
CATGCACTAGGGCCAGCTGG+AGG - chr4_2:67356642-67356661 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 67351207 67356880 67351207 ID=Msa0617040;Name=Msa0617040
chr4_2 mRNA 67351207 67356880 67351207 ID=Msa0617040-mRNA-1;Parent=Msa0617040;Name=Msa0617040-mRNA-1;_AED=0.00;_eAED=0.00;_QI=78|1|1|1|1|1|10|188|469
chr4_2 exon 67351207 67351424 67351207 ID=Msa0617040-mRNA-1:exon:19205;Parent=Msa0617040-mRNA-1
chr4_2 exon 67351735 67351843 67351735 ID=Msa0617040-mRNA-1:exon:19206;Parent=Msa0617040-mRNA-1
chr4_2 exon 67352195 67352425 67352195 ID=Msa0617040-mRNA-1:exon:19207;Parent=Msa0617040-mRNA-1
chr4_2 exon 67352652 67352811 67352652 ID=Msa0617040-mRNA-1:exon:19208;Parent=Msa0617040-mRNA-1
chr4_2 exon 67352920 67352975 67352920 ID=Msa0617040-mRNA-1:exon:19209;Parent=Msa0617040-mRNA-1
chr4_2 exon 67354129 67354281 67354129 ID=Msa0617040-mRNA-1:exon:19210;Parent=Msa0617040-mRNA-1
chr4_2 exon 67354991 67355088 67354991 ID=Msa0617040-mRNA-1:exon:19211;Parent=Msa0617040-mRNA-1
chr4_2 exon 67355575 67355655 67355575 ID=Msa0617040-mRNA-1:exon:19212;Parent=Msa0617040-mRNA-1
chr4_2 exon 67355874 67356107 67355874 ID=Msa0617040-mRNA-1:exon:19213;Parent=Msa0617040-mRNA-1
chr4_2 exon 67356545 67356880 67356545 ID=Msa0617040-mRNA-1:exon:19214;Parent=Msa0617040-mRNA-1
chr4_2 five_prime_UTR 67351207 67351284 67351207 ID=Msa0617040-mRNA-1:five_prime_utr;Parent=Msa0617040-mRNA-1
chr4_2 CDS 67351285 67351424 67351285 ID=Msa0617040-mRNA-1:cds;Parent=Msa0617040-mRNA-1
chr4_2 CDS 67351735 67351843 67351735 ID=Msa0617040-mRNA-1:cds;Parent=Msa0617040-mRNA-1
chr4_2 CDS 67352195 67352425 67352195 ID=Msa0617040-mRNA-1:cds;Parent=Msa0617040-mRNA-1
chr4_2 CDS 67352652 67352811 67352652 ID=Msa0617040-mRNA-1:cds;Parent=Msa0617040-mRNA-1
chr4_2 CDS 67352920 67352975 67352920 ID=Msa0617040-mRNA-1:cds;Parent=Msa0617040-mRNA-1
chr4_2 CDS 67354129 67354281 67354129 ID=Msa0617040-mRNA-1:cds;Parent=Msa0617040-mRNA-1
chr4_2 CDS 67354991 67355088 67354991 ID=Msa0617040-mRNA-1:cds;Parent=Msa0617040-mRNA-1
chr4_2 CDS 67355575 67355655 67355575 ID=Msa0617040-mRNA-1:cds;Parent=Msa0617040-mRNA-1
chr4_2 CDS 67355874 67356107 67355874 ID=Msa0617040-mRNA-1:cds;Parent=Msa0617040-mRNA-1
chr4_2 CDS 67356545 67356692 67356545 ID=Msa0617040-mRNA-1:cds;Parent=Msa0617040-mRNA-1
chr4_2 three_prime_UTR 67356693 67356880 67356693 ID=Msa0617040-mRNA-1:three_prime_utr;Parent=Msa0617040-mRNA-1
Gene Sequence

>Msa0617040

ATGGCTTCAACAAGACAAGTACAGTGTTTGATGCGAAGATTTTACAGAGGAACCAGAACTTTTGGTGTTGCCACACAACCCAACGCTTCTTCATCTTCCCAAACAATCATTGACAAAGAATTTCAACACAGTGCCCACAATTACCATCCACTTCCTATTGTATTTGCTCATGCAAAGGGATCAGCTGTGTGGGATCCAGAGGGAAACAAATATATTGATTTTTTATCTGGCTACTCTGCAGTTAATCAGGGACATTGTCATCCTAAAATTCTTAAAGCTTTAAAAGATCAGGCAGACAGGCTGACGGTGAGCTCACGAGCTTTCTACAATGATCGTTTTCCGGTGTTTGCTGAGTATTTGACAGCCTTGTTTGGTTATGATATGGTACTTCCTATGAATACTGGTGCTGAAGGTGTGGAAACCGCGTTGAAGTTAGCAAGAAAGTGGGGTTATGAAAAGAAAAAAATTCCCAACAATGAGGCTCTTATTGTCTCATGTTGTGGCTGCTTCAATGGTCGTACATTGGGTGTCATATCTATGAGTTGTGACAATGAAGCTACCCGTGGTTTTGGTCCTTTAATGCCAGGCCATCTTAAAGTTGATTTTGGTGATGCAGAAGCACTCGAGAAAATTTTCAAAGAAAAAGGAGACCGCATAGCTGCATTTATTTTGGAACCTATCCAAGGGGAAGCTGGGGTGAAAATCCCCCCAGATGGTTATTTGAAAGCTGTTAGAGATCTTTGTTCCAAATATAACGTGTTGATGATTGCTGATGAAATACAAACTGGATTAGCAAGAACAGGAAAAATGCTGGCTTGTGAGTGGGAAGAAGTTCGTCCAGATGTAGTGATACTAGGGAAAGCTTTGGGTGGAGGAATTATTCCAGTTAGCGCAGTTCTTGCAGACAAAGAAGTGATGCTTTGTATAAAACCTGGACAGCATGGAAGTACTTTTGGTGGAAATCCATTGGCCAGTGCAGTTGCCATTGCCTCACTTGAAGTGATCAAAGAAGAGAGACTTGCTGAGAGATCTACCCAAATGGGAGGTGAGCTTCTCGGTCTGCTGCAGAAGATTCAGAAACAATACCCGGACCATGTGAAGGAGGTGCGGGGAAGAGGACTGTTCATTGGAGTCGAGCTTAACAGCGAAAGTTTGTCCCCTGTATCAGGCTTTGAATTAAGTGAAAAATTGAAGGATAGAGGAGTTCTTGCCAAGTCAACACATGACACAATTATTCGCTTCACTCCCCCACTGTGCATAAGTGCGGATGAGATCCAACAAGGTTCTAAGGCCCTCGCTGATGTGCTGGAAATTGATCTACCAATGTTGAAAAAGATGAAGCCAAAAGATGCTGCTCCTCCAGCTGGCCCTAGTGCATGTGATCGTTGTGGTCGAGTCGTGTATGGTTAA

Protein sequence

>Msa0617040

MASTRQVQCLMRRFYRGTRTFGVATQPNASSSSQTIIDKEFQHSAHNYHPLPIVFAHAKGSAVWDPEGNKYIDFLSGYSAVNQGHCHPKILKALKDQADRLTVSSRAFYNDRFPVFAEYLTALFGYDMVLPMNTGAEGVETALKLARKWGYEKKKIPNNEALIVSCCGCFNGRTLGVISMSCDNEATRGFGPLMPGHLKVDFGDAEALEKIFKEKGDRIAAFILEPIQGEAGVKIPPDGYLKAVRDLCSKYNVLMIADEIQTGLARTGKMLACEWEEVRPDVVILGKALGGGIIPVSAVLADKEVMLCIKPGQHGSTFGGNPLASAVAIASLEVIKEERLAERSTQMGGELLGLLQKIQKQYPDHVKEVRGRGLFIGVELNSESLSPVSGFELSEKLKDRGVLAKSTHDTIIRFTPPLCISADEIQQGSKALADVLEIDLPMLKKMKPKDAAPPAGPSACDRCGRVVYG*