AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0577370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577370 MtrunA17_Chr8g0376561 98.081 469 9 0 1 469 1 469 0.0 957
Msa0577370 MtrunA17_Chr7g0233361 34.625 413 248 9 33 438 68 465 5.21e-64 214
Msa0577370 MtrunA17_Chr7g0244421 30.864 405 243 13 44 424 75 466 1.44e-46 168
Msa0577370 MtrunA17_Chr8g0382871 29.821 446 267 16 26 443 54 481 1.56e-46 167
Msa0577370 MtrunA17_Chr4g0038831 26.714 423 249 13 52 427 81 489 2.68e-36 140
Msa0577370 MtrunA17_Chr3g0145711 30.671 313 192 8 52 352 76 375 2.63e-33 131
Msa0577370 MtrunA17_Chr4g0072721 26.383 235 156 7 218 437 587 819 4.79e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577370 AT5G46180.1 72.581 434 118 1 36 469 43 475 0.0 681
Msa0577370 AT1G80600.1 33.333 411 258 7 30 436 55 453 7.57e-65 216
Msa0577370 AT4G39660.1 29.882 425 255 14 44 443 70 476 2.32e-46 167
Msa0577370 AT4G39660.2 29.904 418 250 14 51 443 2 401 1.42e-45 164
Msa0577370 AT2G38400.1 29.873 395 243 10 52 424 80 462 3.29e-44 162
Msa0577370 AT2G38400.2 29.620 395 244 10 52 424 80 462 3.36e-44 162
Msa0577370 AT3G08860.1 28.924 446 269 15 21 437 49 475 6.97e-44 161
Msa0577370 AT3G08860.2 29.099 433 263 14 21 424 49 466 1.19e-43 160
Msa0577370 AT3G22200.1 28.947 418 247 14 52 427 70 479 4.82e-37 142
Msa0577370 AT3G22200.2 28.947 418 247 14 52 427 79 488 5.90e-37 142
Msa0577370 AT5G63570.2 29.814 322 200 9 52 360 19 327 4.19e-31 124
Msa0577370 AT5G63570.1 29.814 322 200 9 52 360 82 390 7.21e-31 124
Msa0577370 AT3G48730.1 29.193 322 202 9 52 360 80 388 2.27e-28 117

Find 126 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGCATAGCTGCATTTATTT+TGG 0.157532 4_1:+81706148 Msa0577370:CDS
GGCCATCTTAAAGTTGATTT+TGG 0.199551 4_1:+81705975 Msa0577370:CDS
TTAAGATGGCCTGGCATTAA+AGG 0.213274 4_1:-81705963 None:intergenic
GCTGGAGGAGCAGCATCTTT+TGG 0.213355 4_1:-81709841 None:intergenic
AATCATCAACACGTTATATT+TGG 0.227981 4_1:-81707395 None:intergenic
TAGACCAGGCATTCATTATC+TGG 0.272689 4_1:-81709910 None:intergenic
TTAATTTCATAAATATGATA+TGG 0.296649 4_1:-81710022 None:intergenic
GAAAGTTTGTCCCCTGTATC+AGG 0.309360 4_1:+81709209 Msa0577370:CDS
AATGAAGCTACCCGTGGTTT+TGG 0.314723 4_1:+81705939 Msa0577370:CDS
ATTCTTTGTCAATGATTGTT+TGG 0.317700 4_1:-81704590 None:intergenic
CGCACCTCCTTCACATGGTC+CGG 0.342009 4_1:-81709149 None:intergenic
CGAGAAGCTCACCTCCCATT+TGG 0.348974 4_1:-81709097 None:intergenic
CTTAATTCAAAGCCTGATAC+AGG 0.361779 4_1:-81709221 None:intergenic
TCTGCAAGAACTGCGCTAAC+TGG 0.362917 4_1:-81708241 None:intergenic
TACAGAGGAACCAGAACTTT+TGG 0.363782 4_1:+81704534 Msa0577370:CDS
TCATGTTGTGGCTGCTTCAA+TGG 0.367473 4_1:+81705882 Msa0577370:CDS
CATAGTTATACCTCATTGTT+GGG 0.368104 4_1:-81705632 None:intergenic
TTCTTTGTCAATGATTGTTT+GGG 0.376263 4_1:-81704589 None:intergenic
AGCCTTGTTTGGTTATGATA+TGG 0.380865 4_1:+81705526 Msa0577370:CDS
TGGCTACTCTGCAGTTAATC+AGG 0.391203 4_1:+81705040 Msa0577370:CDS
TGTGGCAACACCAAAAGTTC+TGG 0.395603 4_1:-81704544 None:intergenic
GAACCTATCCAAGGGGAAGC+TGG 0.400196 4_1:+81706170 Msa0577370:CDS
TCATAGTTATACCTCATTGT+TGG 0.402470 4_1:-81705633 None:intergenic
TCAATATATTTGTTTCCCTC+TGG 0.406966 4_1:-81705008 None:intergenic
CGAGGGCCTTAGAACCTTGT+TGG 0.409141 4_1:-81709774 None:intergenic
TGAGATCCAACAAGGTTCTA+AGG 0.410990 4_1:+81709768 Msa0577370:CDS
ACAGCTTTCAAATAACCATC+TGG 0.413613 4_1:-81707358 None:intergenic
GAGAAGCTCACCTCCCATTT+GGG 0.418819 4_1:-81709096 None:intergenic
TGCTTCAATGGTCGTACATT+GGG 0.424592 4_1:+81705894 Msa0577370:CDS
AAAGATGCTGCTCCTCCAGC+TGG 0.425140 4_1:+81709844 Msa0577370:CDS
TCAGATACTAGGGAAAGCTT+TGG 0.426949 4_1:+81708204 Msa0577370:intron
GAGTATTTGACAGCCTTGTT+TGG 0.427807 4_1:+81705515 Msa0577370:CDS
TCTTAAAGCTTTAAAAGATC+AGG 0.428054 4_1:+81705433 Msa0577370:CDS
TTTGCATGAGCAAATACAAT+AGG 0.428807 4_1:-81704966 None:intergenic
CAGATACTAGGGAAAGCTTT+GGG 0.440625 4_1:+81708205 Msa0577370:intron
TGAACACCAACCACTACATC+TGG 0.440669 4_1:-81707487 None:intergenic
CCTTCAGCACCAGTATTCAT+AGG 0.441808 4_1:-81705554 None:intergenic
GTGAAGGAGGTGCGGGGAAG+AGG 0.443048 4_1:+81709158 Msa0577370:CDS
TAAGGCCCTCGCTGATGTGC+TGG 0.445290 4_1:+81709786 Msa0577370:CDS
CGTTGTGGTCGAGTCGTGTA+TGG 0.450567 4_1:+81709883 Msa0577370:CDS
ATTGCTGATGAAATACAAAC+TGG 0.456192 4_1:+81707415 Msa0577370:CDS
CGGGGAAGAGGACTGTTCAT+TGG 0.461273 4_1:+81709170 Msa0577370:CDS
AACCTATCCAAGGGGAAGCT+GGG 0.467176 4_1:+81706171 Msa0577370:CDS
ATTGTATTTGCTCATGCAAA+GGG 0.473811 4_1:+81704969 Msa0577370:CDS
GGACCATGTGAAGGAGGTGC+GGG 0.476342 4_1:+81709151 Msa0577370:CDS
CAAACTGGATTAGCAAGAAC+AGG 0.479961 4_1:+81707430 Msa0577370:CDS
ATTGGACAGATCTACCCAAA+TGG 0.483780 4_1:+81709082 Msa0577370:intron
CTAGGGAAAGCTTTGGGTGG+AGG 0.491794 4_1:+81708211 Msa0577370:CDS
TTAAACCTTCCATGCTGTCC+AGG 0.491922 4_1:-81708289 None:intergenic
CTTTAAAAGATCAGGCAGAC+AGG 0.501503 4_1:+81705441 Msa0577370:CDS
CAAATGGGAGGTGAGCTTCT+CGG 0.504493 4_1:+81709098 Msa0577370:CDS
AACATACCCCAGCTTCCCCT+TGG 0.504988 4_1:-81706178 None:intergenic
CGTTGAAGTTAGCAAGAAAG+TGG 0.505236 4_1:+81705588 Msa0577370:CDS
CCACAACGATCACATGCACT+AGG 0.505325 4_1:-81709868 None:intergenic
CTGCTTCAATGGTCGTACAT+TGG 0.506187 4_1:+81705893 Msa0577370:CDS
TTGGGAAGATGAAGAAGCGT+TGG 0.508848 4_1:-81704571 None:intergenic
TTTCTTACCTTATGCACAGT+GGG 0.509433 4_1:-81709310 None:intergenic
ATGGCAACTGCACTGGCCAA+TGG 0.511220 4_1:-81708808 None:intergenic
TGAGGCAATGGCAACTGCAC+TGG 0.516585 4_1:-81708815 None:intergenic
CACCAAAATCAACTTTAAGA+TGG 0.516646 4_1:-81705977 None:intergenic
TATTGTATTTGCTCATGCAA+AGG 0.517613 4_1:+81704968 Msa0577370:CDS
GCTCTTATTGTCTCATGTTG+TGG 0.519417 4_1:+81705870 Msa0577370:CDS
AAATCAACTTTAAGATGGCC+TGG 0.519591 4_1:-81705972 None:intergenic
TTACACATAACATCAATCAA+TGG 0.520997 4_1:+81704473 Msa0577370:exon
TCACATGCACTAGGGCCAGC+TGG 0.522239 4_1:-81709859 None:intergenic
CAGCTTTCAAATAACCATCT+GGG 0.525779 4_1:-81707357 None:intergenic
TTGGACAGATCTACCCAAAT+GGG 0.526655 4_1:+81709083 Msa0577370:intron
TGAGCAAATACAATAGGAAG+TGG 0.526855 4_1:-81704960 None:intergenic
ATGATGATGTAAATCAAAGT+TGG 0.528709 4_1:-81704450 None:intergenic
ATGGTACTTCCTATGAATAC+TGG 0.531481 4_1:+81705545 Msa0577370:CDS
GCACCTCCTTCACATGGTCC+GGG 0.537138 4_1:-81709148 None:intergenic
TGCAAAGGGATCAGCTGTGT+GGG 0.540779 4_1:+81704983 Msa0577370:CDS
TTCTTTGATCACTTCAAGTG+AGG 0.543995 4_1:-81708833 None:intergenic
TTAACCAGATAATGAATGCC+TGG 0.546110 4_1:+81709906 Msa0577370:exon
TGGGAAGATGAAGAAGCGTT+GGG 0.548907 4_1:-81704570 None:intergenic
GATCACTTCAAGTGAGGCAA+TGG 0.551674 4_1:-81708827 None:intergenic
TGGTTAGAAATAGACAGCAC+TGG 0.552720 4_1:-81710078 None:intergenic
AATTGTGTCATGTGTTGACT+TGG 0.561328 4_1:-81709273 None:intergenic
TTCCCCGCACCTCCTTCACA+TGG 0.564937 4_1:-81709154 None:intergenic
ATCAGCTGTGTGGGATCCAG+AGG 0.565766 4_1:+81704992 Msa0577370:CDS
TGTATAAAACCTGGACAGCA+TGG 0.573539 4_1:+81708280 Msa0577370:CDS
CAAATACAATAGGAAGTGGA+TGG 0.580722 4_1:-81704956 None:intergenic
GTCAAATACTCAGCAAACAC+CGG 0.582762 4_1:-81705503 None:intergenic
GAATACTGGTGCTGAAGGTG+TGG 0.583184 4_1:+81705559 Msa0577370:CDS
TAAAACCTGGACAGCATGGA+AGG 0.583742 4_1:+81708284 Msa0577370:CDS
ACCCCAGCTTCCCCTTGGAT+AGG 0.586113 4_1:-81706173 None:intergenic
ACCTATCCAAGGGGAAGCTG+GGG 0.586910 4_1:+81706172 Msa0577370:CDS
ACTGGGAATAAGTGATCTCA+AGG 0.588655 4_1:-81710060 None:intergenic
AGCTTTCAAATAACCATCTG+GGG 0.599511 4_1:-81707356 None:intergenic
GTGATGCTTTGTATAAAACC+TGG 0.600068 4_1:+81708271 Msa0577370:CDS
CGGACCATGTGAAGGAGGTG+CGG 0.603381 4_1:+81709150 Msa0577370:CDS
GGTTAGAAATAGACAGCACT+GGG 0.604578 4_1:-81710077 None:intergenic
TAATTCAAAGCCTGATACAG+GGG 0.605478 4_1:-81709219 None:intergenic
GTTGAAGTTAGCAAGAAAGT+GGG 0.607885 4_1:+81705589 Msa0577370:CDS
TTAATTCAAAGCCTGATACA+GGG 0.608427 4_1:-81709220 None:intergenic
AGAAGTTCGTCCAGATGTAG+TGG 0.615199 4_1:+81707477 Msa0577370:CDS
TGAAGAAGCGTTGGGTTGTG+TGG 0.618995 4_1:-81704562 None:intergenic
CACAACGATCACATGCACTA+GGG 0.624398 4_1:-81709867 None:intergenic
AATTTCCAGCACATCAGCGA+GGG 0.626318 4_1:-81709791 None:intergenic
GACCATGTGAAGGAGGTGCG+GGG 0.627725 4_1:+81709152 Msa0577370:CDS
GCATTAAAGGACCAAAACCA+CGG 0.628989 4_1:-81705950 None:intergenic
TACCATATCATAACCAAACA+AGG 0.631313 4_1:-81705528 None:intergenic
ATGCAAAGGGATCAGCTGTG+TGG 0.641631 4_1:+81704982 Msa0577370:CDS
ACAATACCCGGACCATGTGA+AGG 0.644513 4_1:+81709142 Msa0577370:CDS
GCTTTCAAATAACCATCTGG+GGG 0.649011 4_1:-81707355 None:intergenic
TCTTACCTTATGCACAGTGG+GGG 0.652538 4_1:-81709308 None:intergenic
CTTTCTTACCTTATGCACAG+TGG 0.652810 4_1:-81709311 None:intergenic
CATTAAAGGACCAAAACCAC+GGG 0.654497 4_1:-81705949 None:intergenic
CCTATGAATACTGGTGCTGA+AGG 0.655355 4_1:+81705554 Msa0577370:CDS
TTCTTACCTTATGCACAGTG+GGG 0.660148 4_1:-81709309 None:intergenic
GAAGATTCAGAAACAATACC+CGG 0.661569 4_1:+81709130 Msa0577370:CDS
GACAGATCTACCCAAATGGG+AGG 0.666226 4_1:+81709086 Msa0577370:intron
ATACTAGGGAAAGCTTTGGG+TGG 0.669588 4_1:+81708208 Msa0577370:CDS
CCAAAATAAATGCAGCTATG+CGG 0.671952 4_1:-81706148 None:intergenic
AGATCAGGCAGACAGGCTGA+CGG 0.672284 4_1:+81705448 Msa0577370:CDS
CATGCACTAGGGCCAGCTGG+AGG 0.674851 4_1:-81709856 None:intergenic
ATACCCGGACCATGTGAAGG+AGG 0.676758 4_1:+81709145 Msa0577370:CDS
TCAGCTGTGTGGGATCCAGA+GGG 0.679081 4_1:+81704993 Msa0577370:CDS
AAGAAGAGAGACTTGCTGAG+AGG 0.679464 4_1:+81708851 Msa0577370:CDS
TGTGACAATGAAGCTACCCG+TGG 0.679963 4_1:+81705933 Msa0577370:CDS
CCTAGTGCATGTGATCGTTG+TGG 0.687700 4_1:+81709868 Msa0577370:CDS
TTGAAGTTAGCAAGAAAGTG+GGG 0.692526 4_1:+81705590 Msa0577370:CDS
AGTGCGGATGAGATCCAACA+AGG 0.696962 4_1:+81709760 Msa0577370:intron
CTTTCAAATAACCATCTGGG+GGG 0.711042 4_1:-81707354 None:intergenic
CAATTTCCAGCACATCAGCG+AGG 0.712817 4_1:-81709792 None:intergenic
CTTTCTTGCTAACTTCAACG+CGG 0.721978 4_1:-81705585 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTAGTTTAATATATGA+AGG - chr4_1:81704740-81704759 None:intergenic 10.0%
!!! AAATATATTGATTTTTTATC+TGG + chr4_1:81705020-81705039 Msa0577370:CDS 10.0%
!!! TTTTTTATTCCTTAATTTTT+GGG + chr4_1:81705335-81705354 Msa0577370:intron 10.0%
!!! AATAAGTATTCTTTTTTTTT+TGG - chr4_1:81706232-81706251 None:intergenic 10.0%
!! AATATTAATGTTATGAAAAA+TGG + chr4_1:81707185-81707204 Msa0577370:intron 10.0%
!! ATATTAATGTTATGAAAAAT+GGG + chr4_1:81707186-81707205 Msa0577370:intron 10.0%
!!! ATTTTAATGAATGAAATTAT+CGG - chr4_1:81708697-81708716 None:intergenic 10.0%
!! AATTAATTGTTTATTAAAGA+AGG + chr4_1:81708719-81708738 Msa0577370:intron 10.0%
!! TTGAATAAATTTATTTCATT+AGG + chr4_1:81708917-81708936 Msa0577370:intron 10.0%
!! TTAATTTCATAAATATGATA+TGG - chr4_1:81710025-81710044 None:intergenic 10.0%
!!! TTTTCTTATATTATTATCAC+CGG + chr4_1:81705155-81705174 Msa0577370:intron 15.0%
!! CAAAAATTAAGGAATAAAAA+AGG - chr4_1:81705336-81705355 None:intergenic 15.0%
!!! CTTTTTTATTCCTTAATTTT+TGG + chr4_1:81705334-81705353 Msa0577370:intron 15.0%
!!! TTTAAAGCTTTAAGAATTTT+AGG - chr4_1:81705428-81705447 None:intergenic 15.0%
!! ATAAGAATAGAAAATAGAAT+CGG - chr4_1:81706528-81706547 None:intergenic 15.0%
!! AAACTATTATACTTCATAAA+TGG - chr4_1:81707022-81707041 None:intergenic 15.0%
!! TCTGAACTTAAATTATTAAA+AGG - chr4_1:81707632-81707651 None:intergenic 15.0%
!!! TTTTAATAATTTAAGTTCAG+AGG + chr4_1:81707631-81707650 Msa0577370:intron 15.0%
!! TACAGAATAAAAAAGAAAAA+GGG - chr4_1:81708124-81708143 None:intergenic 15.0%
!! TTACAGAATAAAAAAGAAAA+AGG - chr4_1:81708125-81708144 None:intergenic 15.0%
!! AAAAATAAATAACCATTACA+AGG - chr4_1:81708598-81708617 None:intergenic 15.0%
!! TTAATCAGGTATAAATTGAA+CGG + chr4_1:81705054-81705073 Msa0577370:intron 20.0%
!! ATCAAGATATTACAACTATT+AGG - chr4_1:81705670-81705689 None:intergenic 20.0%
!! TCTCATTTAAAAAATCCAAA+TGG - chr4_1:81705794-81705813 None:intergenic 20.0%
!!! TGGATTTTTTAAATGAGATT+CGG + chr4_1:81705796-81705815 Msa0577370:intron 20.0%
!!! ATTCTTTTATTGTGAAATGA+TGG + chr4_1:81706410-81706429 Msa0577370:intron 20.0%
!! ATAGAAAATAGAATCAGTTA+GGG - chr4_1:81706522-81706541 None:intergenic 20.0%
!! AATAGAAAATAGAATCAGTT+AGG - chr4_1:81706523-81706542 None:intergenic 20.0%
!! ATTCTGTTATTATGAAATGT+TGG + chr4_1:81706783-81706802 Msa0577370:intron 20.0%
!! CATACATAATATTACATTCT+CGG - chr4_1:81707049-81707068 None:intergenic 20.0%
!! CAATAAAAAAATCAGTTTGA+CGG - chr4_1:81707158-81707177 None:intergenic 20.0%
!! TAACGTCATATAAAAAAATG+TGG - chr4_1:81707313-81707332 None:intergenic 20.0%
!!! ATGACGTTATATTTTTTTAC+AGG + chr4_1:81707324-81707343 Msa0577370:intron 20.0%
!! AGGAAAAACTAGATATAATA+TGG - chr4_1:81707915-81707934 None:intergenic 20.0%
!!! AAAAAAAAACATAAGTTGGA+TGG - chr4_1:81708063-81708082 None:intergenic 20.0%
!! GTGAAAAAAAAAACATAAGT+TGG - chr4_1:81708067-81708086 None:intergenic 20.0%
!! AAGAAATTAGTGGTATAAAA+AGG - chr4_1:81708169-81708188 None:intergenic 20.0%
!! AAGAAAGTTAAAGAAATTAG+TGG - chr4_1:81708179-81708198 None:intergenic 20.0%
!!! TTTGATTTGATTAAGTTGAA+AGG + chr4_1:81708496-81708515 Msa0577370:intron 20.0%
!!! TTTTAAAAAAATCCATCCTA+TGG + chr4_1:81708616-81708635 Msa0577370:intron 20.0%
!! TTTAAAAAAATCCATCCTAT+GGG + chr4_1:81708617-81708636 Msa0577370:intron 20.0%
!! GAAAAGTAACAGAAAAAAAA+AGG - chr4_1:81708768-81708787 None:intergenic 20.0%
!! TGAATTAAGTGAAAAATTGA+AGG + chr4_1:81709235-81709254 Msa0577370:CDS 20.0%
!! TATAGTGAAAAATGAAAACA+AGG - chr4_1:81709482-81709501 None:intergenic 20.0%
!! AATTATTGAAATTGAAAGCT+AGG + chr4_1:81709507-81709526 Msa0577370:intron 20.0%
!!! AAGCATTATTTCTTTTATCT+AGG - chr4_1:81709631-81709650 None:intergenic 20.0%
!!! TTTTATAAAATTCATAGACC+AGG - chr4_1:81709927-81709946 None:intergenic 20.0%
!!! ACTTATATTTTACTTTTGCT+TGG + chr4_1:81709946-81709965 Msa0577370:three_prime_UTR 20.0%
!! TGAAATTAAAAAATGTCACT+AGG + chr4_1:81710036-81710055 Msa0577370:three_prime_UTR 20.0%
!! ATGATGATGTAAATCAAAGT+TGG - chr4_1:81704453-81704472 None:intergenic 25.0%
! TTACACATAACATCAATCAA+TGG + chr4_1:81704473-81704492 Msa0577370:exon 25.0%
! TTCTTTGTCAATGATTGTTT+GGG - chr4_1:81704592-81704611 None:intergenic 25.0%
! ATTCTTTGTCAATGATTGTT+TGG - chr4_1:81704593-81704612 None:intergenic 25.0%
!!! AAAGACACCATTTTTATTTC+TGG + chr4_1:81704674-81704693 Msa0577370:intron 25.0%
!!! AAGACACCATTTTTATTTCT+GGG + chr4_1:81704675-81704694 Msa0577370:intron 25.0%
!!! TCTTTTTTTAATCACTCCAT+TGG + chr4_1:81704766-81704785 Msa0577370:intron 25.0%
!!! CTTTTTTTAATCACTCCATT+GGG + chr4_1:81704767-81704786 Msa0577370:intron 25.0%
!!! TCTTAAAGCTTTAAAAGATC+AGG + chr4_1:81705433-81705452 Msa0577370:CDS 25.0%
!!! TTGCATTTTTCAAAATTGTC+CGG + chr4_1:81705693-81705712 Msa0577370:intron 25.0%
!!! TTTTTTGTAGCTATACCATT+TGG + chr4_1:81705776-81705795 Msa0577370:intron 25.0%
! ATCATACAAAGGAAACATAT+TGG - chr4_1:81706262-81706281 None:intergenic 25.0%
!!! GTCACTTGTTTTATCTTAAA+TGG + chr4_1:81706321-81706340 Msa0577370:intron 25.0%
!! ATCTAAGATATTGCTTATAG+AGG + chr4_1:81706445-81706464 Msa0577370:intron 25.0%
!! TCTAAGATATTGCTTATAGA+GGG + chr4_1:81706446-81706465 Msa0577370:intron 25.0%
! ATCTCAGAAATTGCTTATAT+AGG + chr4_1:81706818-81706837 Msa0577370:intron 25.0%
! TCTCAGAAATTGCTTATATA+GGG + chr4_1:81706819-81706838 Msa0577370:intron 25.0%
! ATAGAAAATAGAATCGGTAA+AGG - chr4_1:81706895-81706914 None:intergenic 25.0%
!!! AATGTACCGTTTTTGAATTT+CGG + chr4_1:81706971-81706990 Msa0577370:intron 25.0%
! AATCATCAACACGTTATATT+TGG - chr4_1:81707398-81707417 None:intergenic 25.0%
! ACAGAATATATAAGAGGTAA+AGG - chr4_1:81707513-81707532 None:intergenic 25.0%
! AGAGATACAGAATATATAAG+AGG - chr4_1:81707519-81707538 None:intergenic 25.0%
! TGGTAAAACAGAGAATATTA+TGG + chr4_1:81707813-81707832 Msa0577370:intron 25.0%
! AAAACAGAGAATATTATGGT+TGG + chr4_1:81707817-81707836 Msa0577370:intron 25.0%
! TCACAAAAAAGAGAAACTTA+TGG + chr4_1:81708083-81708102 Msa0577370:intron 25.0%
!!! TTTCTTTTGATTCAGATACT+AGG + chr4_1:81708193-81708212 Msa0577370:intron 25.0%
!!! TTCTTTTGATTCAGATACTA+GGG + chr4_1:81708194-81708213 Msa0577370:intron 25.0%
! ACAAGAAAACAATAAACGAA+TGG - chr4_1:81708339-81708358 None:intergenic 25.0%
!! TAAGTTGAAAGGTTTCAAAA+AGG + chr4_1:81708507-81708526 Msa0577370:intron 25.0%
!!! GTTAGTCTTATATATTGATC+TGG + chr4_1:81708985-81709004 Msa0577370:intron 25.0%
! AACTTAAGACATTGCTTAAA+TGG - chr4_1:81709346-81709365 None:intergenic 25.0%
! TTCATAAGCATAACTAGATT+AGG - chr4_1:81709545-81709564 None:intergenic 25.0%
! AATGATTTGATTACTGTGAA+TGG + chr4_1:81709595-81709614 Msa0577370:intron 25.0%
! GATAAAAGAAATAATGCTTC+TGG + chr4_1:81709632-81709651 Msa0577370:intron 25.0%
!! TGTAAATGTCCCTAATATTT+TGG + chr4_1:81709707-81709726 Msa0577370:intron 25.0%
! AATCCTAGACCAAAATATTA+GGG - chr4_1:81709719-81709738 None:intergenic 25.0%
! AAATCCTAGACCAAAATATT+AGG - chr4_1:81709720-81709739 None:intergenic 25.0%
!!! ATTTTACTTTTGCTTGGAAA+AGG + chr4_1:81709952-81709971 Msa0577370:three_prime_UTR 25.0%
AGGGAAAGATATATACTTGT+GGG - chr4_1:81704628-81704647 None:intergenic 30.0%
AAGGGAAAGATATATACTTG+TGG - chr4_1:81704629-81704648 None:intergenic 30.0%
AACAGAACAGAAGAAAACAA+GGG - chr4_1:81704647-81704666 None:intergenic 30.0%
TATGAAGGTTGAATAGCTTA+AGG - chr4_1:81704725-81704744 None:intergenic 30.0%
TTTGCATGAGCAAATACAAT+AGG - chr4_1:81704969-81704988 None:intergenic 30.0%
TATTGTATTTGCTCATGCAA+AGG + chr4_1:81704968-81704987 Msa0577370:CDS 30.0%
ATTGTATTTGCTCATGCAAA+GGG + chr4_1:81704969-81704988 Msa0577370:CDS 30.0%
TCAATATATTTGTTTCCCTC+TGG - chr4_1:81705011-81705030 None:intergenic 30.0%
TTTCTATTTCCTTTGTGAAC+TGG + chr4_1:81705264-81705283 Msa0577370:intron 30.0%
TAGCATTAGTAAACAGGATT+TGG - chr4_1:81705305-81705324 None:intergenic 30.0%
! TCGTCTTTTCCCAAAAATTA+AGG - chr4_1:81705347-81705366 None:intergenic 30.0%
!!! AGTGTATGTCATTTTTCTTC+AGG + chr4_1:81705391-81705410 Msa0577370:intron 30.0%
!!! GTGTATGTCATTTTTCTTCA+GGG + chr4_1:81705392-81705411 Msa0577370:intron 30.0%
! TTTCTACAATGATCGTTTTC+CGG + chr4_1:81705484-81705503 Msa0577370:CDS 30.0%
TACCATATCATAACCAAACA+AGG - chr4_1:81705531-81705550 None:intergenic 30.0%
GAAAAAAATTCCCAACAATG+AGG + chr4_1:81705622-81705641 Msa0577370:CDS 30.0%
CATAGTTATACCTCATTGTT+GGG - chr4_1:81705635-81705654 None:intergenic 30.0%
TCATAGTTATACCTCATTGT+TGG - chr4_1:81705636-81705655 None:intergenic 30.0%
AAGCAAATATTTAGCATCAC+CGG - chr4_1:81705715-81705734 None:intergenic 30.0%
TCAGCAAAAGTAAATTGACA+CGG - chr4_1:81705834-81705853 None:intergenic 30.0%
!! TGTCAATTTACTTTTGCTGA+TGG + chr4_1:81705834-81705853 Msa0577370:intron 30.0%
! CACCAAAATCAACTTTAAGA+TGG - chr4_1:81705980-81705999 None:intergenic 30.0%
!!! TTTATTTTGGAACCTATCCA+AGG + chr4_1:81706161-81706180 Msa0577370:CDS 30.0%
!!! TTATTTTGGAACCTATCCAA+GGG + chr4_1:81706162-81706181 Msa0577370:CDS 30.0%
!!! ATAGAGTTACTTTTTTCCTG+AGG + chr4_1:81706625-81706644 Msa0577370:intron 30.0%
CTTGCAAAGACTAAATCATA+TGG - chr4_1:81706667-81706686 None:intergenic 30.0%
! ATGATTTAGTCTTTGCAAGA+AGG + chr4_1:81706668-81706687 Msa0577370:intron 30.0%
CAGATATATAAGAGATATGC+TGG - chr4_1:81706933-81706952 None:intergenic 30.0%
GTAACACCGAAATTCAAAAA+CGG - chr4_1:81706980-81706999 None:intergenic 30.0%
TGTGGAAAAGATGATATGTT+TGG - chr4_1:81707295-81707314 None:intergenic 30.0%
ATTGCTGATGAAATACAAAC+TGG + chr4_1:81707415-81707434 Msa0577370:CDS 30.0%
ATGTTTATAGCGAAGTACAA+GGG - chr4_1:81707550-81707569 None:intergenic 30.0%
!! AAAGGAAGTAAGGTATCTTT+TGG - chr4_1:81707746-81707765 None:intergenic 30.0%
TGATATGGTTAAAGGAAGTA+AGG - chr4_1:81707756-81707775 None:intergenic 30.0%
GAATCGTATGATATGGTTAA+AGG - chr4_1:81707764-81707783 None:intergenic 30.0%
! CTTGTACTTTTGTGTTTTAC+TGG + chr4_1:81707793-81707812 Msa0577370:intron 30.0%
! TATTCTGTAACCTTTTTCTG+AGG + chr4_1:81708135-81708154 Msa0577370:intron 30.0%
CAATAGTTGTCAAACATAGA+AGG + chr4_1:81708359-81708378 Msa0577370:intron 30.0%
GTTAAATCAAGACATGCAAA+CGG - chr4_1:81708576-81708595 None:intergenic 30.0%
GTCTTGATTTAACCTTGTAA+TGG + chr4_1:81708583-81708602 Msa0577370:intron 30.0%
AAGAAATCAATGCAAAAGTG+AGG - chr4_1:81708661-81708680 None:intergenic 30.0%
!!! GTTACTTTTCACAGTACTTT+TGG + chr4_1:81708778-81708797 Msa0577370:intron 30.0%
TTAATTCAAAGCCTGATACA+GGG - chr4_1:81709223-81709242 None:intergenic 30.0%
AGTGAAAAATTGAAGGATAG+AGG + chr4_1:81709242-81709261 Msa0577370:CDS 30.0%
CAATGGTGAAAGTTACAAAT+AGG - chr4_1:81709396-81709415 None:intergenic 30.0%
ATTTGATTACTGTGAATGGT+AGG + chr4_1:81709599-81709618 Msa0577370:intron 30.0%
! TTGATGCGAAGATTTTACAG+AGG + chr4_1:81704519-81704538 Msa0577370:CDS 35.0%
GAACAGAACAGAAGAAAACA+AGG - chr4_1:81704648-81704667 None:intergenic 35.0%
GAGAGACCCAGAAATAAAAA+TGG - chr4_1:81704684-81704703 None:intergenic 35.0%
TTACAATCCAAACAACCCAA+TGG - chr4_1:81704785-81704804 None:intergenic 35.0%
CAAATACAATAGGAAGTGGA+TGG - chr4_1:81704959-81704978 None:intergenic 35.0%
TGAGCAAATACAATAGGAAG+TGG - chr4_1:81704963-81704982 None:intergenic 35.0%
AACCATCTTCATTCATCTGA+GGG - chr4_1:81705234-81705253 None:intergenic 35.0%
AAACCATCTTCATTCATCTG+AGG - chr4_1:81705235-81705254 None:intergenic 35.0%
CAATAAACTCCAGTTCACAA+AGG - chr4_1:81705276-81705295 None:intergenic 35.0%
TGAACTGGAGTTTATTGTTG+TGG + chr4_1:81705279-81705298 Msa0577370:intron 35.0%
AAGCAGTAGCATTAGTAAAC+AGG - chr4_1:81705311-81705330 None:intergenic 35.0%
!! AGCCTTGTTTGGTTATGATA+TGG + chr4_1:81705526-81705545 Msa0577370:CDS 35.0%
ATGGTACTTCCTATGAATAC+TGG + chr4_1:81705545-81705564 Msa0577370:CDS 35.0%
GTTGAAGTTAGCAAGAAAGT+GGG + chr4_1:81705589-81705608 Msa0577370:CDS 35.0%
TTGAAGTTAGCAAGAAAGTG+GGG + chr4_1:81705590-81705609 Msa0577370:CDS 35.0%
!! AAATCAACTTTAAGATGGCC+TGG - chr4_1:81705975-81705994 None:intergenic 35.0%
!! GGCCATCTTAAAGTTGATTT+TGG + chr4_1:81705975-81705994 Msa0577370:CDS 35.0%
CCAAAATAAATGCAGCTATG+CGG - chr4_1:81706151-81706170 None:intergenic 35.0%
!!! TATTTTGGAACCTATCCAAG+GGG + chr4_1:81706163-81706182 Msa0577370:CDS 35.0%
!! TACAAGTCTTGTGACTTGTT+TGG + chr4_1:81706492-81706511 Msa0577370:intron 35.0%
! AACTAGACATCTTTTTCCTC+AGG - chr4_1:81706644-81706663 None:intergenic 35.0%
TCTATTGTGATACATGAGCA+CGG - chr4_1:81706716-81706735 None:intergenic 35.0%
!!! TACAAGTCTTGCGACTTTTT+TGG + chr4_1:81706865-81706884 Msa0577370:intron 35.0%
CAAAAACGGTACATTTCACA+TGG - chr4_1:81706966-81706985 None:intergenic 35.0%
ATTAGATCATGAACGAAAGC+CGG - chr4_1:81707112-81707131 None:intergenic 35.0%
TAATGTGAGAGCTATTCTAC+AGG - chr4_1:81707242-81707261 None:intergenic 35.0%
AGCTTTCAAATAACCATCTG+GGG - chr4_1:81707359-81707378 None:intergenic 35.0%
CAGCTTTCAAATAACCATCT+GGG - chr4_1:81707360-81707379 None:intergenic 35.0%
ACAGCTTTCAAATAACCATC+TGG - chr4_1:81707361-81707380 None:intergenic 35.0%
GATGTTTATAGCGAAGTACA+AGG - chr4_1:81707551-81707570 None:intergenic 35.0%
TTGCGAAGAATCGTATGATA+TGG - chr4_1:81707771-81707790 None:intergenic 35.0%
TGCATATTCACAGGAATAGA+AGG - chr4_1:81707935-81707954 None:intergenic 35.0%
AGTTTCTGATGCATATTCAC+AGG - chr4_1:81707944-81707963 None:intergenic 35.0%
CTAGGTAGATGCATTTAACT+AGG + chr4_1:81708018-81708037 Msa0577370:intron 35.0%
! AAAACATAAGTTGGATGGTC+AGG - chr4_1:81708058-81708077 None:intergenic 35.0%
GGAAACTAAACCTCAGAAAA+AGG - chr4_1:81708148-81708167 None:intergenic 35.0%
GTGATGCTTTGTATAAAACC+TGG + chr4_1:81708271-81708290 Msa0577370:CDS 35.0%
! ACTTTTCACAGTACTTTTGG+TGG + chr4_1:81708781-81708800 Msa0577370:intron 35.0%
! TACTTTTGGTGGAAATCCAT+TGG + chr4_1:81708792-81708811 Msa0577370:CDS 35.0%
TTCTTTGATCACTTCAAGTG+AGG - chr4_1:81708836-81708855 None:intergenic 35.0%
TGCAACTGATGTCTTAGTAT+TGG + chr4_1:81709064-81709083 Msa0577370:intron 35.0%
GAAGATTCAGAAACAATACC+CGG + chr4_1:81709130-81709149 Msa0577370:CDS 35.0%
TAATTCAAAGCCTGATACAG+GGG - chr4_1:81709222-81709241 None:intergenic 35.0%
CTTAATTCAAAGCCTGATAC+AGG - chr4_1:81709224-81709243 None:intergenic 35.0%
!! AATTGTGTCATGTGTTGACT+TGG - chr4_1:81709276-81709295 None:intergenic 35.0%
TTTCTTACCTTATGCACAGT+GGG - chr4_1:81709313-81709332 None:intergenic 35.0%
TTGAGTTCACATGCACATTA+AGG + chr4_1:81709364-81709383 Msa0577370:intron 35.0%
TATAGCTAGTTGAGTACTTC+AGG + chr4_1:81709439-81709458 Msa0577370:intron 35.0%
! AATCCTTTGAGAGGACAAAA+AGG - chr4_1:81709672-81709691 None:intergenic 35.0%
! TTTTGTCCTCTCAAAGGATT+AGG + chr4_1:81709672-81709691 Msa0577370:intron 35.0%
AAGTAACCTAATCCTTTGAG+AGG - chr4_1:81709681-81709700 None:intergenic 35.0%
!!! TGTCCCTAATATTTTGGTCT+AGG + chr4_1:81709713-81709732 Msa0577370:intron 35.0%
TAAAAGTAATCCTTGCAGTG+CGG + chr4_1:81709744-81709763 Msa0577370:intron 35.0%
!!! GGCTTCATCTTTTTCAACAT+TGG - chr4_1:81709823-81709842 None:intergenic 35.0%
TTAACCAGATAATGAATGCC+TGG + chr4_1:81709906-81709925 Msa0577370:exon 35.0%
! TACAGAGGAACCAGAACTTT+TGG + chr4_1:81704534-81704553 Msa0577370:CDS 40.0%
! AATCACTCCATTGGGTTGTT+TGG + chr4_1:81704775-81704794 Msa0577370:intron 40.0%
ACGGATCTTGCTAATTACCA+AGG + chr4_1:81705073-81705092 Msa0577370:intron 40.0%
GTCATTCCGGTCTAAATTGT+CGG - chr4_1:81705111-81705130 None:intergenic 40.0%
! AACATGTGTCAGTGTCATTC+CGG - chr4_1:81705124-81705143 None:intergenic 40.0%
! CTTTAAAAGATCAGGCAGAC+AGG + chr4_1:81705441-81705460 Msa0577370:CDS 40.0%
GTCAAATACTCAGCAAACAC+CGG - chr4_1:81705506-81705525 None:intergenic 40.0%
!! GAGTATTTGACAGCCTTGTT+TGG + chr4_1:81705515-81705534 Msa0577370:CDS 40.0%
CTTTCTTGCTAACTTCAACG+CGG - chr4_1:81705588-81705607 None:intergenic 40.0%
CGTTGAAGTTAGCAAGAAAG+TGG + chr4_1:81705588-81705607 Msa0577370:CDS 40.0%
AACATGAGACAATAAGAGCC+TGG - chr4_1:81705869-81705888 None:intergenic 40.0%
GCTCTTATTGTCTCATGTTG+TGG + chr4_1:81705870-81705889 Msa0577370:CDS 40.0%
TGCTTCAATGGTCGTACATT+GGG + chr4_1:81705894-81705913 Msa0577370:CDS 40.0%
CATTAAAGGACCAAAACCAC+GGG - chr4_1:81705952-81705971 None:intergenic 40.0%
GCATTAAAGGACCAAAACCA+CGG - chr4_1:81705953-81705972 None:intergenic 40.0%
TTAAGATGGCCTGGCATTAA+AGG - chr4_1:81705966-81705985 None:intergenic 40.0%
! GCGCTCGAGAAAATTTTCAA+AGG + chr4_1:81706008-81706027 Msa0577370:CDS 40.0%
! CCGCATAGCTGCATTTATTT+TGG + chr4_1:81706148-81706167 Msa0577370:CDS 40.0%
CTATGCGGTACATCATACAA+AGG - chr4_1:81706273-81706292 None:intergenic 40.0%
GTTAGACAACGAGTTCTATG+CGG - chr4_1:81706288-81706307 None:intergenic 40.0%
TAGAAACCTGCTAGGTTTCA+GGG - chr4_1:81706583-81706602 None:intergenic 40.0%
CTCTAATCTAGAAACCTGCT+AGG - chr4_1:81706591-81706610 None:intergenic 40.0%
! TTAGTCTTTGCAAGAAGGAC+TGG + chr4_1:81706673-81706692 Msa0577370:intron 40.0%
CTTTCAAATAACCATCTGGG+GGG - chr4_1:81707357-81707376 None:intergenic 40.0%
GCTTTCAAATAACCATCTGG+GGG - chr4_1:81707358-81707377 None:intergenic 40.0%
!! CAAACTGGATTAGCAAGAAC+AGG + chr4_1:81707430-81707449 Msa0577370:CDS 40.0%
AGCAAGAACAGGAAAAATGC+TGG + chr4_1:81707441-81707460 Msa0577370:CDS 40.0%
!! AAAAATGCTGGCTTGTGAGT+GGG + chr4_1:81707453-81707472 Msa0577370:CDS 40.0%
AGCTTGAAACTGACACTACA+TGG + chr4_1:81707690-81707709 Msa0577370:intron 40.0%
GACACTACATGGCAAGAAAT+AGG + chr4_1:81707701-81707720 Msa0577370:intron 40.0%
CTTGTCTGAGTCTTAGTCAA+TGG + chr4_1:81707962-81707981 Msa0577370:intron 40.0%
TGCATTTAACTAGGTACCAC+TGG + chr4_1:81708027-81708046 Msa0577370:intron 40.0%
TCAGATACTAGGGAAAGCTT+TGG + chr4_1:81708204-81708223 Msa0577370:intron 40.0%
CAGATACTAGGGAAAGCTTT+GGG + chr4_1:81708205-81708224 Msa0577370:intron 40.0%
TGTATAAAACCTGGACAGCA+TGG + chr4_1:81708280-81708299 Msa0577370:CDS 40.0%
AGACCAATCAAGGGGTTTAA+GGG - chr4_1:81708407-81708426 None:intergenic 40.0%
AAGACCAATCAAGGGGTTTA+AGG - chr4_1:81708408-81708427 None:intergenic 40.0%
!! AAACCCCTTGATTGGTCTTA+TGG + chr4_1:81708409-81708428 Msa0577370:intron 40.0%
ACACCATAAGACCAATCAAG+GGG - chr4_1:81708415-81708434 None:intergenic 40.0%
CACACCATAAGACCAATCAA+GGG - chr4_1:81708416-81708435 None:intergenic 40.0%
TCACACCATAAGACCAATCA+AGG - chr4_1:81708417-81708436 None:intergenic 40.0%
AACAAAACTCCACCTTCTGT+TGG + chr4_1:81708444-81708463 Msa0577370:intron 40.0%
AGACTTCTGATTCCAACAGA+AGG - chr4_1:81708459-81708478 None:intergenic 40.0%
TTTGTGAATCCTTGTGTCCA+TGG + chr4_1:81708550-81708569 Msa0577370:intron 40.0%
TTTCACTAGTTCCCATAGGA+TGG - chr4_1:81708631-81708650 None:intergenic 40.0%
GCAATTTCACTAGTTCCCAT+AGG - chr4_1:81708635-81708654 None:intergenic 40.0%
CATCGATATCTCAAAGAGAG+TGG - chr4_1:81709035-81709054 None:intergenic 40.0%
ATTGGACAGATCTACCCAAA+TGG + chr4_1:81709082-81709101 Msa0577370:intron 40.0%
TTGGACAGATCTACCCAAAT+GGG + chr4_1:81709083-81709102 Msa0577370:intron 40.0%
TTCTTACCTTATGCACAGTG+GGG - chr4_1:81709312-81709331 None:intergenic 40.0%
CTTTCTTACCTTATGCACAG+TGG - chr4_1:81709314-81709333 None:intergenic 40.0%
! CATCCTTTTTGTCCTCTCAA+AGG + chr4_1:81709666-81709685 Msa0577370:intron 40.0%
TGAGATCCAACAAGGTTCTA+AGG + chr4_1:81709768-81709787 Msa0577370:CDS 40.0%
TAGACCAGGCATTCATTATC+TGG - chr4_1:81709913-81709932 None:intergenic 40.0%
ACTGGGAATAAGTGATCTCA+AGG - chr4_1:81710063-81710082 None:intergenic 40.0%
TGTGGCAACACCAAAAGTTC+TGG - chr4_1:81704547-81704566 None:intergenic 45.0%
!! TGGGAAGATGAAGAAGCGTT+GGG - chr4_1:81704573-81704592 None:intergenic 45.0%
! TTGGGAAGATGAAGAAGCGT+TGG - chr4_1:81704574-81704593 None:intergenic 45.0%
TGGCTACTCTGCAGTTAATC+AGG + chr4_1:81705040-81705059 Msa0577370:CDS 45.0%
!! GTAGCACCGACAATTTAGAC+CGG + chr4_1:81705102-81705121 Msa0577370:intron 45.0%
GTCCCTCAGATGAATGAAGA+TGG + chr4_1:81705229-81705248 Msa0577370:intron 45.0%
CCTTCAGCACCAGTATTCAT+AGG - chr4_1:81705557-81705576 None:intergenic 45.0%
! CCTATGAATACTGGTGCTGA+AGG + chr4_1:81705554-81705573 Msa0577370:CDS 45.0%
! TGCTGATGGAAACTTGTTCC+AGG + chr4_1:81705848-81705867 Msa0577370:intron 45.0%
TCATGTTGTGGCTGCTTCAA+TGG + chr4_1:81705882-81705901 Msa0577370:CDS 45.0%
CTGCTTCAATGGTCGTACAT+TGG + chr4_1:81705893-81705912 Msa0577370:CDS 45.0%
! AATGAAGCTACCCGTGGTTT+TGG + chr4_1:81705939-81705958 Msa0577370:CDS 45.0%
!! GGTTTTGGTCCTTTAATGCC+AGG + chr4_1:81705954-81705973 Msa0577370:CDS 45.0%
! CCTTTTTCTGCAGTTCAGCA+GGG - chr4_1:81706125-81706144 None:intergenic 45.0%
! TCCTTTTTCTGCAGTTCAGC+AGG - chr4_1:81706126-81706145 None:intergenic 45.0%
AGAAACCTGCTAGGTTTCAG+GGG - chr4_1:81706582-81706601 None:intergenic 45.0%
CTAGAAACCTGCTAGGTTTC+AGG - chr4_1:81706584-81706603 None:intergenic 45.0%
TGTGACAGTCCATCTTTGAC+CGG + chr4_1:81707090-81707109 Msa0577370:intron 45.0%
!! GAAAAATGCTGGCTTGTGAG+TGG + chr4_1:81707452-81707471 Msa0577370:CDS 45.0%
AGAAGTTCGTCCAGATGTAG+TGG + chr4_1:81707477-81707496 Msa0577370:CDS 45.0%
TGAACACCAACCACTACATC+TGG - chr4_1:81707490-81707509 None:intergenic 45.0%
AACATCATCCTGTCGTCACA+CGG + chr4_1:81707565-81707584 Msa0577370:intron 45.0%
TTTACTAACCGTGTGACGAC+AGG - chr4_1:81707576-81707595 None:intergenic 45.0%
CCTAGCTGCATACTTGCAAA+TGG - chr4_1:81708003-81708022 None:intergenic 45.0%
CCATTTGCAAGTATGCAGCT+AGG + chr4_1:81708000-81708019 Msa0577370:intron 45.0%
!! ATACTAGGGAAAGCTTTGGG+TGG + chr4_1:81708208-81708227 Msa0577370:CDS 45.0%
TAAAACCTGGACAGCATGGA+AGG + chr4_1:81708284-81708303 Msa0577370:CDS 45.0%
TTAAACCTTCCATGCTGTCC+AGG - chr4_1:81708292-81708311 None:intergenic 45.0%
CTTCTGATTCCAACAGAAGG+TGG - chr4_1:81708456-81708475 None:intergenic 45.0%
GATCACTTCAAGTGAGGCAA+TGG - chr4_1:81708830-81708849 None:intergenic 45.0%
!! AAGAAGAGAGACTTGCTGAG+AGG + chr4_1:81708851-81708870 Msa0577370:CDS 45.0%
GAAAGTTTGTCCCCTGTATC+AGG + chr4_1:81709209-81709228 Msa0577370:CDS 45.0%
TCTTACCTTATGCACAGTGG+GGG - chr4_1:81709311-81709330 None:intergenic 45.0%
! GTACTTCAGGTTATGCGTCT+TGG + chr4_1:81709452-81709471 Msa0577370:intron 45.0%
AATTTCCAGCACATCAGCGA+GGG - chr4_1:81709794-81709813 None:intergenic 45.0%
CACAACGATCACATGCACTA+GGG - chr4_1:81709870-81709889 None:intergenic 45.0%
!! TGAAGAAGCGTTGGGTTGTG+TGG - chr4_1:81704565-81704584 None:intergenic 50.0%
ATGCAAAGGGATCAGCTGTG+TGG + chr4_1:81704982-81705001 Msa0577370:CDS 50.0%
TGCAAAGGGATCAGCTGTGT+GGG + chr4_1:81704983-81705002 Msa0577370:CDS 50.0%
!! GTCGGTGCTACATAAAGCCT+TGG - chr4_1:81705093-81705112 None:intergenic 50.0%
CGATACAGACATGCTGACAC+CGG - chr4_1:81705177-81705196 None:intergenic 50.0%
! CGGTGTCAGCATGTCTGTAT+CGG + chr4_1:81705175-81705194 Msa0577370:intron 50.0%
! GTCTGTATCGGTGCTTCGTA+AGG + chr4_1:81705187-81705206 Msa0577370:intron 50.0%
! GAATACTGGTGCTGAAGGTG+TGG + chr4_1:81705559-81705578 Msa0577370:CDS 50.0%
TGTGACAATGAAGCTACCCG+TGG + chr4_1:81705933-81705952 Msa0577370:CDS 50.0%
CCCTGCTGAACTGCAGAAAA+AGG + chr4_1:81706122-81706141 Msa0577370:intron 50.0%
AACCTATCCAAGGGGAAGCT+GGG + chr4_1:81706171-81706190 Msa0577370:CDS 50.0%
GAAACCTGCTAGGTTTCAGG+GGG - chr4_1:81706581-81706600 None:intergenic 50.0%
GAACGAAAGCCGGTCAAAGA+TGG - chr4_1:81707102-81707121 None:intergenic 50.0%
GTTCGTCCAGATGTAGTGGT+TGG + chr4_1:81707481-81707500 Msa0577370:intron 50.0%
TCTGCAAGAACTGCGCTAAC+TGG - chr4_1:81708244-81708263 None:intergenic 50.0%
CCAATCAAGGGGTTTAAGGG+CGG - chr4_1:81708404-81708423 None:intergenic 50.0%
TCAAGACATGCAAACGGCCA+TGG - chr4_1:81708570-81708589 None:intergenic 50.0%
GACAGATCTACCCAAATGGG+AGG + chr4_1:81709086-81709105 Msa0577370:intron 50.0%
GAGAAGCTCACCTCCCATTT+GGG - chr4_1:81709099-81709118 None:intergenic 50.0%
CAAATGGGAGGTGAGCTTCT+CGG + chr4_1:81709098-81709117 Msa0577370:CDS 50.0%
ACAATACCCGGACCATGTGA+AGG + chr4_1:81709142-81709161 Msa0577370:CDS 50.0%
AGTGCGGATGAGATCCAACA+AGG + chr4_1:81709760-81709779 Msa0577370:intron 50.0%
CAATTTCCAGCACATCAGCG+AGG - chr4_1:81709795-81709814 None:intergenic 50.0%
CCACAACGATCACATGCACT+AGG - chr4_1:81709871-81709890 None:intergenic 50.0%
CCTAGTGCATGTGATCGTTG+TGG + chr4_1:81709868-81709887 Msa0577370:CDS 50.0%
ATCAGCTGTGTGGGATCCAG+AGG + chr4_1:81704992-81705011 Msa0577370:CDS 55.0%
TCAGCTGTGTGGGATCCAGA+GGG + chr4_1:81704993-81705012 Msa0577370:CDS 55.0%
AGATCAGGCAGACAGGCTGA+CGG + chr4_1:81705448-81705467 Msa0577370:CDS 55.0%
GAACCTATCCAAGGGGAAGC+TGG + chr4_1:81706170-81706189 Msa0577370:CDS 55.0%
ACCTATCCAAGGGGAAGCTG+GGG + chr4_1:81706172-81706191 Msa0577370:CDS 55.0%
AACATACCCCAGCTTCCCCT+TGG - chr4_1:81706181-81706200 None:intergenic 55.0%
TTCTCCCCCTGAAACCTAGC+AGG + chr4_1:81706574-81706593 Msa0577370:intron 55.0%
CAGGTGAAAATCCCCCCAGA+TGG + chr4_1:81707343-81707362 Msa0577370:intron 55.0%
GGATGGTCAGGTCTATCCAG+TGG - chr4_1:81708046-81708065 None:intergenic 55.0%
!! CTAGGGAAAGCTTTGGGTGG+AGG + chr4_1:81708211-81708230 Msa0577370:CDS 55.0%
CCGCCCTTAAACCCCTTGAT+TGG + chr4_1:81708401-81708420 Msa0577370:intron 55.0%
TGCAAACGGCCATGGACACA+AGG - chr4_1:81708562-81708581 None:intergenic 55.0%
! ATGGCAACTGCACTGGCCAA+TGG - chr4_1:81708811-81708830 None:intergenic 55.0%
TGAGGCAATGGCAACTGCAC+TGG - chr4_1:81708818-81708837 None:intergenic 55.0%
CGAGAAGCTCACCTCCCATT+TGG - chr4_1:81709100-81709119 None:intergenic 55.0%
ATACCCGGACCATGTGAAGG+AGG + chr4_1:81709145-81709164 Msa0577370:CDS 55.0%
CGGGGAAGAGGACTGTTCAT+TGG + chr4_1:81709170-81709189 Msa0577370:CDS 55.0%
TCACTCCCCCACTGTGCATA+AGG + chr4_1:81709303-81709322 Msa0577370:CDS 55.0%
TGGATCTCATCCGCACTGCA+AGG - chr4_1:81709757-81709776 None:intergenic 55.0%
CGAGGGCCTTAGAACCTTGT+TGG - chr4_1:81709777-81709796 None:intergenic 55.0%
! GCTGGAGGAGCAGCATCTTT+TGG - chr4_1:81709844-81709863 None:intergenic 55.0%
AAAGATGCTGCTCCTCCAGC+TGG + chr4_1:81709844-81709863 Msa0577370:CDS 55.0%
CGTTGTGGTCGAGTCGTGTA+TGG + chr4_1:81709883-81709902 Msa0577370:CDS 55.0%
ACCCCAGCTTCCCCTTGGAT+AGG - chr4_1:81706176-81706195 None:intergenic 60.0%
GCACCTCCTTCACATGGTCC+GGG - chr4_1:81709151-81709170 None:intergenic 60.0%
CGCACCTCCTTCACATGGTC+CGG - chr4_1:81709152-81709171 None:intergenic 60.0%
CGGACCATGTGAAGGAGGTG+CGG + chr4_1:81709150-81709169 Msa0577370:CDS 60.0%
! GGACCATGTGAAGGAGGTGC+GGG + chr4_1:81709151-81709170 Msa0577370:CDS 60.0%
! GACCATGTGAAGGAGGTGCG+GGG + chr4_1:81709152-81709171 Msa0577370:CDS 60.0%
TTCCCCGCACCTCCTTCACA+TGG - chr4_1:81709157-81709176 None:intergenic 60.0%
TAAGGCCCTCGCTGATGTGC+TGG + chr4_1:81709786-81709805 Msa0577370:CDS 60.0%
TCACATGCACTAGGGCCAGC+TGG - chr4_1:81709862-81709881 None:intergenic 60.0%
! GTGAAGGAGGTGCGGGGAAG+AGG + chr4_1:81709158-81709177 Msa0577370:CDS 65.0%
CATGCACTAGGGCCAGCTGG+AGG - chr4_1:81709859-81709878 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 81704425 81710097 81704425 ID=Msa0577370;Name=Msa0577370
chr4_1 mRNA 81704425 81710097 81704425 ID=Msa0577370-mRNA-1;Parent=Msa0577370;Name=Msa0577370-mRNA-1;_AED=0.00;_eAED=0.00;_QI=67|1|1|1|1|1|10|188|469
chr4_1 exon 81704425 81704631 81704425 ID=Msa0577370-mRNA-1:exon:29394;Parent=Msa0577370-mRNA-1
chr4_1 exon 81704953 81705061 81704953 ID=Msa0577370-mRNA-1:exon:29395;Parent=Msa0577370-mRNA-1
chr4_1 exon 81705413 81705643 81705413 ID=Msa0577370-mRNA-1:exon:29396;Parent=Msa0577370-mRNA-1
chr4_1 exon 81705870 81706029 81705870 ID=Msa0577370-mRNA-1:exon:29397;Parent=Msa0577370-mRNA-1
chr4_1 exon 81706138 81706193 81706138 ID=Msa0577370-mRNA-1:exon:29398;Parent=Msa0577370-mRNA-1
chr4_1 exon 81707346 81707498 81707346 ID=Msa0577370-mRNA-1:exon:29399;Parent=Msa0577370-mRNA-1
chr4_1 exon 81708208 81708305 81708208 ID=Msa0577370-mRNA-1:exon:29400;Parent=Msa0577370-mRNA-1
chr4_1 exon 81708792 81708872 81708792 ID=Msa0577370-mRNA-1:exon:29401;Parent=Msa0577370-mRNA-1
chr4_1 exon 81709091 81709324 81709091 ID=Msa0577370-mRNA-1:exon:29402;Parent=Msa0577370-mRNA-1
chr4_1 exon 81709762 81710097 81709762 ID=Msa0577370-mRNA-1:exon:29403;Parent=Msa0577370-mRNA-1
chr4_1 five_prime_UTR 81704425 81704491 81704425 ID=Msa0577370-mRNA-1:five_prime_utr;Parent=Msa0577370-mRNA-1
chr4_1 CDS 81704492 81704631 81704492 ID=Msa0577370-mRNA-1:cds;Parent=Msa0577370-mRNA-1
chr4_1 CDS 81704953 81705061 81704953 ID=Msa0577370-mRNA-1:cds;Parent=Msa0577370-mRNA-1
chr4_1 CDS 81705413 81705643 81705413 ID=Msa0577370-mRNA-1:cds;Parent=Msa0577370-mRNA-1
chr4_1 CDS 81705870 81706029 81705870 ID=Msa0577370-mRNA-1:cds;Parent=Msa0577370-mRNA-1
chr4_1 CDS 81706138 81706193 81706138 ID=Msa0577370-mRNA-1:cds;Parent=Msa0577370-mRNA-1
chr4_1 CDS 81707346 81707498 81707346 ID=Msa0577370-mRNA-1:cds;Parent=Msa0577370-mRNA-1
chr4_1 CDS 81708208 81708305 81708208 ID=Msa0577370-mRNA-1:cds;Parent=Msa0577370-mRNA-1
chr4_1 CDS 81708792 81708872 81708792 ID=Msa0577370-mRNA-1:cds;Parent=Msa0577370-mRNA-1
chr4_1 CDS 81709091 81709324 81709091 ID=Msa0577370-mRNA-1:cds;Parent=Msa0577370-mRNA-1
chr4_1 CDS 81709762 81709909 81709762 ID=Msa0577370-mRNA-1:cds;Parent=Msa0577370-mRNA-1
chr4_1 three_prime_UTR 81709910 81710097 81709910 ID=Msa0577370-mRNA-1:three_prime_utr;Parent=Msa0577370-mRNA-1
Gene Sequence

>Msa0577370

ATGGCTTCAACAAGACAAGTACAGTGTTTGATGCGAAGATTTTACAGAGGAACCAGAACTTTTGGTGTTGCCACACAACCCAACGCTTCTTCATCTTCCCAAACAATCATTGACAAAGAATTTCAACACAGTGCCCACAATTACCATCCACTTCCTATTGTATTTGCTCATGCAAAGGGATCAGCTGTGTGGGATCCAGAGGGAAACAAATATATTGATTTTTTATCTGGCTACTCTGCAGTTAATCAGGGACATTGTCATCCTAAAATTCTTAAAGCTTTAAAAGATCAGGCAGACAGGCTGACGGTGAGCTCACGAGCTTTCTACAATGATCGTTTTCCGGTGTTTGCTGAGTATTTGACAGCCTTGTTTGGTTATGATATGGTACTTCCTATGAATACTGGTGCTGAAGGTGTGGAAACCGCGTTGAAGTTAGCAAGAAAGTGGGGTTATGAAAAGAAAAAAATTCCCAACAATGAGGCTCTTATTGTCTCATGTTGTGGCTGCTTCAATGGTCGTACATTGGGTGTCATATCTATGAGTTGTGACAATGAAGCTACCCGTGGTTTTGGTCCTTTAATGCCAGGCCATCTTAAAGTTGATTTTGGTGATGCAGAAGCGCTCGAGAAAATTTTCAAAGAAAAAGGAGACCGCATAGCTGCATTTATTTTGGAACCTATCCAAGGGGAAGCTGGGGTGAAAATCCCCCCAGATGGTTATTTGAAAGCTGTTAGAGATCTTTGTTCCAAATATAACGTGTTGATGATTGCTGATGAAATACAAACTGGATTAGCAAGAACAGGAAAAATGCTGGCTTGTGAGTGGGAAGAAGTTCGTCCAGATGTAGTGATACTAGGGAAAGCTTTGGGTGGAGGAATTATTCCAGTTAGCGCAGTTCTTGCAGACAAAGAAGTGATGCTTTGTATAAAACCTGGACAGCATGGAAGTACTTTTGGTGGAAATCCATTGGCCAGTGCAGTTGCCATTGCCTCACTTGAAGTGATCAAAGAAGAGAGACTTGCTGAGAGATCTACCCAAATGGGAGGTGAGCTTCTCGGTCTGCTGCAGAAGATTCAGAAACAATACCCGGACCATGTGAAGGAGGTGCGGGGAAGAGGACTGTTCATTGGAGTCGAGCTTAACAGCGAAAGTTTGTCCCCTGTATCAGGCTTTGAATTAAGTGAAAAATTGAAGGATAGAGGAGTTCTTGCCAAGTCAACACATGACACAATTATTCGCTTCACTCCCCCACTGTGCATAAGTGCGGATGAGATCCAACAAGGTTCTAAGGCCCTCGCTGATGTGCTGGAAATTGATCTACCAATGTTGAAAAAGATGAAGCCAAAAGATGCTGCTCCTCCAGCTGGCCCTAGTGCATGTGATCGTTGTGGTCGAGTCGTGTATGGTTAA

Protein sequence

>Msa0577370

MASTRQVQCLMRRFYRGTRTFGVATQPNASSSSQTIIDKEFQHSAHNYHPLPIVFAHAKGSAVWDPEGNKYIDFLSGYSAVNQGHCHPKILKALKDQADRLTVSSRAFYNDRFPVFAEYLTALFGYDMVLPMNTGAEGVETALKLARKWGYEKKKIPNNEALIVSCCGCFNGRTLGVISMSCDNEATRGFGPLMPGHLKVDFGDAEALEKIFKEKGDRIAAFILEPIQGEAGVKIPPDGYLKAVRDLCSKYNVLMIADEIQTGLARTGKMLACEWEEVRPDVVILGKALGGGIIPVSAVLADKEVMLCIKPGQHGSTFGGNPLASAVAIASLEVIKEERLAERSTQMGGELLGLLQKIQKQYPDHVKEVRGRGLFIGVELNSESLSPVSGFELSEKLKDRGVLAKSTHDTIIRFTPPLCISADEIQQGSKALADVLEIDLPMLKKMKPKDAAPPAGPSACDRCGRVVYG*