AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0656100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0656100 MtrunA17_Chr8g0376561 98.081 469 9 0 1 469 1 469 0.0 957
Msa0656100 MtrunA17_Chr7g0233361 34.625 413 248 9 33 438 68 465 5.21e-64 214
Msa0656100 MtrunA17_Chr7g0244421 30.864 405 243 13 44 424 75 466 1.44e-46 168
Msa0656100 MtrunA17_Chr8g0382871 29.821 446 267 16 26 443 54 481 1.56e-46 167
Msa0656100 MtrunA17_Chr4g0038831 26.714 423 249 13 52 427 81 489 2.68e-36 140
Msa0656100 MtrunA17_Chr3g0145711 30.671 313 192 8 52 352 76 375 2.63e-33 131
Msa0656100 MtrunA17_Chr4g0072721 26.383 235 156 7 218 437 587 819 4.79e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0656100 AT5G46180.1 72.581 434 118 1 36 469 43 475 0.0 681
Msa0656100 AT1G80600.1 33.333 411 258 7 30 436 55 453 7.57e-65 216
Msa0656100 AT4G39660.1 29.882 425 255 14 44 443 70 476 2.32e-46 167
Msa0656100 AT4G39660.2 29.904 418 250 14 51 443 2 401 1.42e-45 164
Msa0656100 AT2G38400.1 29.873 395 243 10 52 424 80 462 3.29e-44 162
Msa0656100 AT2G38400.2 29.620 395 244 10 52 424 80 462 3.36e-44 162
Msa0656100 AT3G08860.1 28.924 446 269 15 21 437 49 475 6.97e-44 161
Msa0656100 AT3G08860.2 29.099 433 263 14 21 424 49 466 1.19e-43 160
Msa0656100 AT3G22200.1 28.947 418 247 14 52 427 70 479 4.82e-37 142
Msa0656100 AT3G22200.2 28.947 418 247 14 52 427 79 488 5.90e-37 142
Msa0656100 AT5G63570.2 29.814 322 200 9 52 360 19 327 4.19e-31 124
Msa0656100 AT5G63570.1 29.814 322 200 9 52 360 82 390 7.21e-31 124
Msa0656100 AT3G48730.1 29.193 322 202 9 52 360 80 388 2.27e-28 117

Find 131 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGCATAGCTGCATTTATTT+TGG 0.157532 4_3:+65208100 Msa0656100:CDS
GGCCATCTTAAAGTTGATTT+TGG 0.199551 4_3:+65207927 Msa0656100:CDS
TTAAGATGGCCTGGCATTAA+AGG 0.213274 4_3:-65207915 None:intergenic
GCTGGAGGAGCAGCATCTTT+TGG 0.213355 4_3:-65211793 None:intergenic
AATCATCAACACGTTATATT+TGG 0.227981 4_3:-65209347 None:intergenic
ATATGAATGAATGTGTAATA+AGG 0.263883 4_3:-65206383 None:intergenic
TAGACCAGGCATTCATTATC+TGG 0.272689 4_3:-65211862 None:intergenic
TTAATTTCATAAATATGATA+TGG 0.296649 4_3:-65211974 None:intergenic
GAAAGTTTGTCCCCTGTATC+AGG 0.309360 4_3:+65211161 Msa0656100:CDS
AATGAAGCTACCCGTGGTTT+TGG 0.314723 4_3:+65207891 Msa0656100:CDS
ATTCTTTGTCAATGATTGTT+TGG 0.317700 4_3:-65206553 None:intergenic
TATGAATGAATGTGTAATAA+GGG 0.327609 4_3:-65206382 None:intergenic
CGCACCTCCTTCACATGGTC+CGG 0.342009 4_3:-65211101 None:intergenic
CGAGAAGCTCACCTCCCATT+TGG 0.348974 4_3:-65211049 None:intergenic
CTTAATTCAAAGCCTGATAC+AGG 0.361779 4_3:-65211173 None:intergenic
TCTGCAAGAACTGCGCTAAC+TGG 0.362917 4_3:-65210193 None:intergenic
TACAGAGGAACCAGAACTTT+TGG 0.363782 4_3:+65206497 Msa0656100:CDS
TCATGTTGTGGCTGCTTCAA+TGG 0.367473 4_3:+65207834 Msa0656100:CDS
CATAGTTATACCTCATTGTT+GGG 0.368104 4_3:-65207584 None:intergenic
TTCTTTGTCAATGATTGTTT+GGG 0.376263 4_3:-65206552 None:intergenic
AGCCTTGTTTGGTTATGATA+TGG 0.380865 4_3:+65207478 Msa0656100:CDS
TGGCTACTCTGCAGTTAATC+AGG 0.391203 4_3:+65206992 Msa0656100:CDS
TGTGGCAACACCAAAAGTTC+TGG 0.395603 4_3:-65206507 None:intergenic
GAACCTATCCAAGGGGAAGC+TGG 0.400196 4_3:+65208122 Msa0656100:CDS
TCATAGTTATACCTCATTGT+TGG 0.402470 4_3:-65207585 None:intergenic
TCAATATATTTGTTTCCCTC+TGG 0.406966 4_3:-65206960 None:intergenic
CGAGGGCCTTAGAACCTTGT+TGG 0.409141 4_3:-65211726 None:intergenic
TGAGATCCAACAAGGTTCTA+AGG 0.410990 4_3:+65211720 Msa0656100:CDS
ACAGCTTTCAAATAACCATC+TGG 0.413613 4_3:-65209310 None:intergenic
GAGAAGCTCACCTCCCATTT+GGG 0.418819 4_3:-65211048 None:intergenic
TGCTTCAATGGTCGTACATT+GGG 0.424592 4_3:+65207846 Msa0656100:CDS
AAAGATGCTGCTCCTCCAGC+TGG 0.425140 4_3:+65211796 Msa0656100:CDS
TCAGATACTAGGGAAAGCTT+TGG 0.426949 4_3:+65210156 Msa0656100:intron
GAGTATTTGACAGCCTTGTT+TGG 0.427807 4_3:+65207467 Msa0656100:CDS
TCTTAAAGCTTTAAAAGATC+AGG 0.428054 4_3:+65207385 Msa0656100:CDS
TTTGCATGAGCAAATACAAT+AGG 0.428807 4_3:-65206918 None:intergenic
CAGATACTAGGGAAAGCTTT+GGG 0.440625 4_3:+65210157 Msa0656100:intron
TGAACACCAACCACTACATC+TGG 0.440669 4_3:-65209439 None:intergenic
CCTTCAGCACCAGTATTCAT+AGG 0.441808 4_3:-65207506 None:intergenic
GTGAAGGAGGTGCGGGGAAG+AGG 0.443048 4_3:+65211110 Msa0656100:CDS
TAAGGCCCTCGCTGATGTGC+TGG 0.445290 4_3:+65211738 Msa0656100:CDS
CGTTGTGGTCGAGTCGTGTA+TGG 0.450567 4_3:+65211835 Msa0656100:CDS
ATTGCTGATGAAATACAAAC+TGG 0.456192 4_3:+65209367 Msa0656100:CDS
CGGGGAAGAGGACTGTTCAT+TGG 0.461273 4_3:+65211122 Msa0656100:CDS
AACCTATCCAAGGGGAAGCT+GGG 0.467176 4_3:+65208123 Msa0656100:CDS
ATTGTATTTGCTCATGCAAA+GGG 0.473811 4_3:+65206921 Msa0656100:CDS
GGACCATGTGAAGGAGGTGC+GGG 0.476342 4_3:+65211103 Msa0656100:CDS
CAAACTGGATTAGCAAGAAC+AGG 0.479961 4_3:+65209382 Msa0656100:CDS
ATTGGACAGATCTACCCAAA+TGG 0.483780 4_3:+65211034 Msa0656100:intron
CTAGGGAAAGCTTTGGGTGG+AGG 0.491794 4_3:+65210163 Msa0656100:CDS
TTAAACCTTCCATGCTGTCC+AGG 0.491922 4_3:-65210241 None:intergenic
CTTTAAAAGATCAGGCAGAC+AGG 0.501503 4_3:+65207393 Msa0656100:CDS
CAAATGGGAGGTGAGCTTCT+CGG 0.504493 4_3:+65211050 Msa0656100:CDS
AACATACCCCAGCTTCCCCT+TGG 0.504988 4_3:-65208130 None:intergenic
CGTTGAAGTTAGCAAGAAAG+TGG 0.505236 4_3:+65207540 Msa0656100:CDS
CCACAACGATCACATGCACT+AGG 0.505325 4_3:-65211820 None:intergenic
CTGCTTCAATGGTCGTACAT+TGG 0.506187 4_3:+65207845 Msa0656100:CDS
TTGGGAAGATGAAGAAGCGT+TGG 0.508848 4_3:-65206534 None:intergenic
TTTCTTACCTTATGCACAGT+GGG 0.509433 4_3:-65211262 None:intergenic
ATGGCAACTGCACTGGCCAA+TGG 0.511220 4_3:-65210760 None:intergenic
TGAGGCAATGGCAACTGCAC+TGG 0.516585 4_3:-65210767 None:intergenic
CACCAAAATCAACTTTAAGA+TGG 0.516646 4_3:-65207929 None:intergenic
TATTGTATTTGCTCATGCAA+AGG 0.517613 4_3:+65206920 Msa0656100:CDS
GCTCTTATTGTCTCATGTTG+TGG 0.519417 4_3:+65207822 Msa0656100:CDS
AAATCAACTTTAAGATGGCC+TGG 0.519591 4_3:-65207924 None:intergenic
TTACACATAACATCAATCAA+TGG 0.520997 4_3:+65206436 Msa0656100:exon
TCACATGCACTAGGGCCAGC+TGG 0.522239 4_3:-65211811 None:intergenic
CAGCTTTCAAATAACCATCT+GGG 0.525779 4_3:-65209309 None:intergenic
TTGGACAGATCTACCCAAAT+GGG 0.526655 4_3:+65211035 Msa0656100:intron
TGAGCAAATACAATAGGAAG+TGG 0.526855 4_3:-65206912 None:intergenic
ATGATGATGTAAATCAAAGT+TGG 0.528709 4_3:-65206413 None:intergenic
ATGGTACTTCCTATGAATAC+TGG 0.531481 4_3:+65207497 Msa0656100:CDS
GCACCTCCTTCACATGGTCC+GGG 0.537138 4_3:-65211100 None:intergenic
TGCAAAGGGATCAGCTGTGT+GGG 0.540779 4_3:+65206935 Msa0656100:CDS
TTCTTTGATCACTTCAAGTG+AGG 0.543995 4_3:-65210785 None:intergenic
TTAACCAGATAATGAATGCC+TGG 0.546110 4_3:+65211858 Msa0656100:exon
TGGGAAGATGAAGAAGCGTT+GGG 0.548907 4_3:-65206533 None:intergenic
GATCACTTCAAGTGAGGCAA+TGG 0.551674 4_3:-65210779 None:intergenic
TGGTTAGAAATAGACAGCAC+TGG 0.552720 4_3:-65212030 None:intergenic
AATTGTGTCATGTGTTGACT+TGG 0.561328 4_3:-65211225 None:intergenic
TTCCCCGCACCTCCTTCACA+TGG 0.564937 4_3:-65211106 None:intergenic
ATCAGCTGTGTGGGATCCAG+AGG 0.565766 4_3:+65206944 Msa0656100:CDS
TGTATAAAACCTGGACAGCA+TGG 0.573539 4_3:+65210232 Msa0656100:CDS
CAAATACAATAGGAAGTGGA+TGG 0.580722 4_3:-65206908 None:intergenic
ATGAATGAATGTGTAATAAG+GGG 0.581962 4_3:-65206381 None:intergenic
GTCAAATACTCAGCAAACAC+CGG 0.582762 4_3:-65207455 None:intergenic
GAATACTGGTGCTGAAGGTG+TGG 0.583184 4_3:+65207511 Msa0656100:CDS
TAAAACCTGGACAGCATGGA+AGG 0.583742 4_3:+65210236 Msa0656100:CDS
ACCCCAGCTTCCCCTTGGAT+AGG 0.586113 4_3:-65208125 None:intergenic
ACCTATCCAAGGGGAAGCTG+GGG 0.586910 4_3:+65208124 Msa0656100:CDS
ACTGGGAATAAGTGATCTCA+AGG 0.588655 4_3:-65212012 None:intergenic
AATGAATGTGTAATAAGGGG+AGG 0.597963 4_3:-65206378 None:intergenic
AGCTTTCAAATAACCATCTG+GGG 0.599511 4_3:-65209308 None:intergenic
GTGATGCTTTGTATAAAACC+TGG 0.600068 4_3:+65210223 Msa0656100:CDS
CGGACCATGTGAAGGAGGTG+CGG 0.603381 4_3:+65211102 Msa0656100:CDS
GGTTAGAAATAGACAGCACT+GGG 0.604578 4_3:-65212029 None:intergenic
TAATTCAAAGCCTGATACAG+GGG 0.605478 4_3:-65211171 None:intergenic
GTTGAAGTTAGCAAGAAAGT+GGG 0.607885 4_3:+65207541 Msa0656100:CDS
TTAATTCAAAGCCTGATACA+GGG 0.608427 4_3:-65211172 None:intergenic
AGAAGTTCGTCCAGATGTAG+TGG 0.615199 4_3:+65209429 Msa0656100:CDS
TGAAGAAGCGTTGGGTTGTG+TGG 0.618995 4_3:-65206525 None:intergenic
CACAACGATCACATGCACTA+GGG 0.624398 4_3:-65211819 None:intergenic
ATGAATGTGTAATAAGGGGA+GGG 0.624570 4_3:-65206377 None:intergenic
AATTTCCAGCACATCAGCGA+GGG 0.626318 4_3:-65211743 None:intergenic
GACCATGTGAAGGAGGTGCG+GGG 0.627725 4_3:+65211104 Msa0656100:CDS
GCATTAAAGGACCAAAACCA+CGG 0.628989 4_3:-65207902 None:intergenic
TACCATATCATAACCAAACA+AGG 0.631313 4_3:-65207480 None:intergenic
ATGCAAAGGGATCAGCTGTG+TGG 0.641631 4_3:+65206934 Msa0656100:CDS
ACAATACCCGGACCATGTGA+AGG 0.644513 4_3:+65211094 Msa0656100:CDS
GCTTTCAAATAACCATCTGG+GGG 0.649011 4_3:-65209307 None:intergenic
TCTTACCTTATGCACAGTGG+GGG 0.652538 4_3:-65211260 None:intergenic
CTTTCTTACCTTATGCACAG+TGG 0.652810 4_3:-65211263 None:intergenic
CATTAAAGGACCAAAACCAC+GGG 0.654497 4_3:-65207901 None:intergenic
CCTATGAATACTGGTGCTGA+AGG 0.655355 4_3:+65207506 Msa0656100:CDS
TTCTTACCTTATGCACAGTG+GGG 0.660148 4_3:-65211261 None:intergenic
GAAGATTCAGAAACAATACC+CGG 0.661569 4_3:+65211082 Msa0656100:CDS
GACAGATCTACCCAAATGGG+AGG 0.666226 4_3:+65211038 Msa0656100:intron
ATACTAGGGAAAGCTTTGGG+TGG 0.669588 4_3:+65210160 Msa0656100:CDS
CCAAAATAAATGCAGCTATG+CGG 0.671952 4_3:-65208100 None:intergenic
AGATCAGGCAGACAGGCTGA+CGG 0.672284 4_3:+65207400 Msa0656100:CDS
CATGCACTAGGGCCAGCTGG+AGG 0.674851 4_3:-65211808 None:intergenic
ATACCCGGACCATGTGAAGG+AGG 0.676758 4_3:+65211097 Msa0656100:CDS
TCAGCTGTGTGGGATCCAGA+GGG 0.679081 4_3:+65206945 Msa0656100:CDS
AAGAAGAGAGACTTGCTGAG+AGG 0.679464 4_3:+65210803 Msa0656100:CDS
TGTGACAATGAAGCTACCCG+TGG 0.679963 4_3:+65207885 Msa0656100:CDS
CCTAGTGCATGTGATCGTTG+TGG 0.687700 4_3:+65211820 Msa0656100:CDS
TTGAAGTTAGCAAGAAAGTG+GGG 0.692526 4_3:+65207542 Msa0656100:CDS
AGTGCGGATGAGATCCAACA+AGG 0.696962 4_3:+65211712 Msa0656100:intron
CTTTCAAATAACCATCTGGG+GGG 0.711042 4_3:-65209306 None:intergenic
CAATTTCCAGCACATCAGCG+AGG 0.712817 4_3:-65211744 None:intergenic
CTTTCTTGCTAACTTCAACG+CGG 0.721978 4_3:-65207537 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTAGTTTAATATATGA+AGG - chr4_3:65206697-65206716 None:intergenic 10.0%
!!! AAATATATTGATTTTTTATC+TGG + chr4_3:65206972-65206991 Msa0656100:CDS 10.0%
!!! TTTTTTATTCCTTAATTTTT+GGG + chr4_3:65207287-65207306 Msa0656100:intron 10.0%
!!! AAAAAGTATTCTTTTTTTTT+TGG - chr4_3:65208184-65208203 None:intergenic 10.0%
!! AATATTAATGTTATGAAAAA+TGG + chr4_3:65209137-65209156 Msa0656100:intron 10.0%
!! ATATTAATGTTATGAAAAAT+GGG + chr4_3:65209138-65209157 Msa0656100:intron 10.0%
!!! ATTTTAATGAATGAAATTAT+CGG - chr4_3:65210649-65210668 None:intergenic 10.0%
!! AATTAATTGTTTATTAAAGA+AGG + chr4_3:65210671-65210690 Msa0656100:intron 10.0%
!! TTGAATAAATTTATTTCATT+AGG + chr4_3:65210869-65210888 Msa0656100:intron 10.0%
!! TTAATTTCATAAATATGATA+TGG - chr4_3:65211977-65211996 None:intergenic 10.0%
!!! TTTTCTTATATTATTATCAC+CGG + chr4_3:65207107-65207126 Msa0656100:intron 15.0%
!! CAAAAATTAAGGAATAAAAA+AGG - chr4_3:65207288-65207307 None:intergenic 15.0%
!!! CTTTTTTATTCCTTAATTTT+TGG + chr4_3:65207286-65207305 Msa0656100:intron 15.0%
!!! TTTAAAGCTTTAAGAATTTT+AGG - chr4_3:65207380-65207399 None:intergenic 15.0%
!! ATAAGAATAGAAAATAGAAT+CGG - chr4_3:65208479-65208498 None:intergenic 15.0%
!! AAACTATTATACTTCATAAA+TGG - chr4_3:65208973-65208992 None:intergenic 15.0%
!! AATAAAAAAAATCAGTTTGA+CGG - chr4_3:65209109-65209128 None:intergenic 15.0%
!! TCTGAACTTAAATTATTAAA+AGG - chr4_3:65209584-65209603 None:intergenic 15.0%
!!! TTTTAATAATTTAAGTTCAG+AGG + chr4_3:65209583-65209602 Msa0656100:intron 15.0%
!! TACAGAATAAAAAAGAAAAA+GGG - chr4_3:65210076-65210095 None:intergenic 15.0%
!! TTACAGAATAAAAAAGAAAA+AGG - chr4_3:65210077-65210096 None:intergenic 15.0%
!! AAAAATAAATAACCATTACA+AGG - chr4_3:65210550-65210569 None:intergenic 15.0%
!! TATGAATGAATGTGTAATAA+GGG - chr4_3:65206385-65206404 None:intergenic 20.0%
!! ATATGAATGAATGTGTAATA+AGG - chr4_3:65206386-65206405 None:intergenic 20.0%
!! TTAATCAGGTATAAATTGAA+CGG + chr4_3:65207006-65207025 Msa0656100:intron 20.0%
!! ATCAAGATATTACAACTATT+AGG - chr4_3:65207622-65207641 None:intergenic 20.0%
!! TCTCATTTAAAAAATCCAAA+TGG - chr4_3:65207746-65207765 None:intergenic 20.0%
!!! TGGATTTTTTAAATGAGATT+CGG + chr4_3:65207748-65207767 Msa0656100:intron 20.0%
!! ATAGAAAATAGAATCAGTTA+GGG - chr4_3:65208473-65208492 None:intergenic 20.0%
!! AATAGAAAATAGAATCAGTT+AGG - chr4_3:65208474-65208493 None:intergenic 20.0%
!! ATTCTGTTATTATGAAATGT+TGG + chr4_3:65208734-65208753 Msa0656100:intron 20.0%
!! CATACATAATATTACATTCT+CGG - chr4_3:65209000-65209019 None:intergenic 20.0%
!! TAACGTCATATAAAAAAATG+TGG - chr4_3:65209265-65209284 None:intergenic 20.0%
!!! ATGACGTTATATTTTTTTAC+AGG + chr4_3:65209276-65209295 Msa0656100:intron 20.0%
!! AGGAAAAACTAGATATAATA+TGG - chr4_3:65209867-65209886 None:intergenic 20.0%
!! AAGAAATTAGTGGTATAAAA+AGG - chr4_3:65210121-65210140 None:intergenic 20.0%
!! AAGAAAGTTAAAGAAATTAG+TGG - chr4_3:65210131-65210150 None:intergenic 20.0%
!!! TTTGATTTGATTAAGTTGAA+AGG + chr4_3:65210448-65210467 Msa0656100:intron 20.0%
!! TTAAAAAAAAATCCATCCTA+TGG + chr4_3:65210568-65210587 Msa0656100:intron 20.0%
!! TAAAAAAAAATCCATCCTAT+GGG + chr4_3:65210569-65210588 Msa0656100:intron 20.0%
!! GAAAAGTAACAGAAAAAAAA+AGG - chr4_3:65210720-65210739 None:intergenic 20.0%
!! TGAATTAAGTGAAAAATTGA+AGG + chr4_3:65211187-65211206 Msa0656100:CDS 20.0%
!! TATAGTGAAAAATGAAAACA+AGG - chr4_3:65211434-65211453 None:intergenic 20.0%
!! AATTATTGAAATTGAAAGCT+AGG + chr4_3:65211459-65211478 Msa0656100:intron 20.0%
!!! AAGCATTATTTCTTTTATCT+AGG - chr4_3:65211583-65211602 None:intergenic 20.0%
!!! TTTTATAAAATTCATAGACC+AGG - chr4_3:65211879-65211898 None:intergenic 20.0%
!!! ACTTATATTTTACTTTTGCT+TGG + chr4_3:65211898-65211917 Msa0656100:three_prime_UTR 20.0%
!! TGAAATTAAAAAATGTCACT+AGG + chr4_3:65211988-65212007 Msa0656100:three_prime_UTR 20.0%
! ATGAATGAATGTGTAATAAG+GGG - chr4_3:65206384-65206403 None:intergenic 25.0%
!! ATGATGATGTAAATCAAAGT+TGG - chr4_3:65206416-65206435 None:intergenic 25.0%
! TTACACATAACATCAATCAA+TGG + chr4_3:65206436-65206455 Msa0656100:exon 25.0%
! TTCTTTGTCAATGATTGTTT+GGG - chr4_3:65206555-65206574 None:intergenic 25.0%
! ATTCTTTGTCAATGATTGTT+TGG - chr4_3:65206556-65206575 None:intergenic 25.0%
!!! AAAGACACCATTTTTATTTC+TGG + chr4_3:65206634-65206653 Msa0656100:intron 25.0%
!!! AAGACACCATTTTTATTTCT+GGG + chr4_3:65206635-65206654 Msa0656100:intron 25.0%
!!! TCTTTTTTTAATCACTCCAT+TGG + chr4_3:65206723-65206742 Msa0656100:intron 25.0%
!!! CTTTTTTTAATCACTCCATT+GGG + chr4_3:65206724-65206743 Msa0656100:intron 25.0%
!!! TCTTAAAGCTTTAAAAGATC+AGG + chr4_3:65207385-65207404 Msa0656100:CDS 25.0%
!!! TTGCATTTTTCAAAATTGTC+CGG + chr4_3:65207645-65207664 Msa0656100:intron 25.0%
!!! TTTTTTGTAGCTATACCATT+TGG + chr4_3:65207728-65207747 Msa0656100:intron 25.0%
!!! GTCACTTGTTTTATCTTAAA+TGG + chr4_3:65208272-65208291 Msa0656100:intron 25.0%
! ATTCTGTTATTGTGAAATGA+TGG + chr4_3:65208361-65208380 Msa0656100:intron 25.0%
!! ATCTAAGATATTGCTTATAG+AGG + chr4_3:65208396-65208415 Msa0656100:intron 25.0%
!! TCTAAGATATTGCTTATAGA+GGG + chr4_3:65208397-65208416 Msa0656100:intron 25.0%
! ATCTCAGAAATTGCTTATAT+AGG + chr4_3:65208769-65208788 Msa0656100:intron 25.0%
! TCTCAGAAATTGCTTATATA+GGG + chr4_3:65208770-65208789 Msa0656100:intron 25.0%
! ATAGAAAATAGAATCGGTAA+AGG - chr4_3:65208846-65208865 None:intergenic 25.0%
!!! AATGTACCGTTTTTGAATTT+CGG + chr4_3:65208922-65208941 Msa0656100:intron 25.0%
! AATCATCAACACGTTATATT+TGG - chr4_3:65209350-65209369 None:intergenic 25.0%
! ACAGAATATATAAGAGGTAA+AGG - chr4_3:65209465-65209484 None:intergenic 25.0%
! AGAGATACAGAATATATAAG+AGG - chr4_3:65209471-65209490 None:intergenic 25.0%
! TGGTAAAACAGAGAATATTA+TGG + chr4_3:65209765-65209784 Msa0656100:intron 25.0%
! AAAACAGAGAATATTATGGT+TGG + chr4_3:65209769-65209788 Msa0656100:intron 25.0%
!! AAAAACAAACATAAGTTGGA+TGG - chr4_3:65210015-65210034 None:intergenic 25.0%
! GTGAAAAAACAAACATAAGT+TGG - chr4_3:65210019-65210038 None:intergenic 25.0%
! TCACAAAAAAGAGAAACTTA+TGG + chr4_3:65210035-65210054 Msa0656100:intron 25.0%
!!! TTTCTTTTGATTCAGATACT+AGG + chr4_3:65210145-65210164 Msa0656100:intron 25.0%
!!! TTCTTTTGATTCAGATACTA+GGG + chr4_3:65210146-65210165 Msa0656100:intron 25.0%
! ACAAGAAAACAATAAACGAA+TGG - chr4_3:65210291-65210310 None:intergenic 25.0%
!! TAAGTTGAAAGGTTTCAAAA+AGG + chr4_3:65210459-65210478 Msa0656100:intron 25.0%
!!! GTTAGTCTTATATATTGATC+TGG + chr4_3:65210937-65210956 Msa0656100:intron 25.0%
! AACTTAAGACATTGCTTAAA+TGG - chr4_3:65211298-65211317 None:intergenic 25.0%
! TTCATAAGCATAACTAGATT+AGG - chr4_3:65211497-65211516 None:intergenic 25.0%
! AAAGATTTGATTACTGTGAA+TGG + chr4_3:65211547-65211566 Msa0656100:intron 25.0%
! GATAAAAGAAATAATGCTTC+TGG + chr4_3:65211584-65211603 Msa0656100:intron 25.0%
!! TGTAAATGTCCCTAATATTT+TGG + chr4_3:65211659-65211678 Msa0656100:intron 25.0%
! AATCCTAGACCAAAATATTA+GGG - chr4_3:65211671-65211690 None:intergenic 25.0%
! AAATCCTAGACCAAAATATT+AGG - chr4_3:65211672-65211691 None:intergenic 25.0%
!!! ATTTTACTTTTGCTTGGAAA+AGG + chr4_3:65211904-65211923 Msa0656100:three_prime_UTR 25.0%
AGGGAAAGATATATACTTGT+GGG - chr4_3:65206591-65206610 None:intergenic 30.0%
AAGGGAAAGATATATACTTG+TGG - chr4_3:65206592-65206611 None:intergenic 30.0%
AACAGAACAGAAGAAAACAA+GGG - chr4_3:65206610-65206629 None:intergenic 30.0%
TATGAAGGTTGAATAGCTTA+AGG - chr4_3:65206682-65206701 None:intergenic 30.0%
TTTGCATGAGCAAATACAAT+AGG - chr4_3:65206921-65206940 None:intergenic 30.0%
TATTGTATTTGCTCATGCAA+AGG + chr4_3:65206920-65206939 Msa0656100:CDS 30.0%
ATTGTATTTGCTCATGCAAA+GGG + chr4_3:65206921-65206940 Msa0656100:CDS 30.0%
TCAATATATTTGTTTCCCTC+TGG - chr4_3:65206963-65206982 None:intergenic 30.0%
TTTCTATTTCCTTTGTGAAC+TGG + chr4_3:65207216-65207235 Msa0656100:intron 30.0%
TAGCATTAGTAAACAGGATT+TGG - chr4_3:65207257-65207276 None:intergenic 30.0%
! TCGTCTTTTCCCAAAAATTA+AGG - chr4_3:65207299-65207318 None:intergenic 30.0%
!!! AGTGTATGTCATTTTTCTTC+AGG + chr4_3:65207343-65207362 Msa0656100:intron 30.0%
!!! GTGTATGTCATTTTTCTTCA+GGG + chr4_3:65207344-65207363 Msa0656100:intron 30.0%
! TTTCTACAATGATCGTTTTC+CGG + chr4_3:65207436-65207455 Msa0656100:CDS 30.0%
TACCATATCATAACCAAACA+AGG - chr4_3:65207483-65207502 None:intergenic 30.0%
GAAAAAAATTCCCAACAATG+AGG + chr4_3:65207574-65207593 Msa0656100:CDS 30.0%
CATAGTTATACCTCATTGTT+GGG - chr4_3:65207587-65207606 None:intergenic 30.0%
TCATAGTTATACCTCATTGT+TGG - chr4_3:65207588-65207607 None:intergenic 30.0%
AAGCAAATATTTAGCATCAC+CGG - chr4_3:65207667-65207686 None:intergenic 30.0%
TCAGCAAAAGTAAATTGACA+CGG - chr4_3:65207786-65207805 None:intergenic 30.0%
!! TGTCAATTTACTTTTGCTGA+TGG + chr4_3:65207786-65207805 Msa0656100:intron 30.0%
! CACCAAAATCAACTTTAAGA+TGG - chr4_3:65207932-65207951 None:intergenic 30.0%
!!! TTTATTTTGGAACCTATCCA+AGG + chr4_3:65208113-65208132 Msa0656100:CDS 30.0%
!!! TTATTTTGGAACCTATCCAA+GGG + chr4_3:65208114-65208133 Msa0656100:CDS 30.0%
CATCATACAAAGGAACATAT+TGG - chr4_3:65208214-65208233 None:intergenic 30.0%
!!! ATAGAGTTACTTTTTTCCTG+AGG + chr4_3:65208576-65208595 Msa0656100:intron 30.0%
CTTGCAAAGACTAAATCATA+TGG - chr4_3:65208618-65208637 None:intergenic 30.0%
! ATGATTTAGTCTTTGCAAGA+AGG + chr4_3:65208619-65208638 Msa0656100:intron 30.0%
CAGATATATAAGAGATATGC+TGG - chr4_3:65208884-65208903 None:intergenic 30.0%
GTAACACCGAAATTCAAAAA+CGG - chr4_3:65208931-65208950 None:intergenic 30.0%
TGTGGAAAAGATGATATGTT+TGG - chr4_3:65209247-65209266 None:intergenic 30.0%
ATTGCTGATGAAATACAAAC+TGG + chr4_3:65209367-65209386 Msa0656100:CDS 30.0%
ATGTTTATAGCGAAGTACAA+GGG - chr4_3:65209502-65209521 None:intergenic 30.0%
!! AAAGGAAGTAAGGTATCTTT+TGG - chr4_3:65209698-65209717 None:intergenic 30.0%
TGATATGGTTAAAGGAAGTA+AGG - chr4_3:65209708-65209727 None:intergenic 30.0%
GAATCGTATGATATGGTTAA+AGG - chr4_3:65209716-65209735 None:intergenic 30.0%
! CTTGTACTTTTGTGTTTTAC+TGG + chr4_3:65209745-65209764 Msa0656100:intron 30.0%
! TATTCTGTAACCTTTTTCTG+AGG + chr4_3:65210087-65210106 Msa0656100:intron 30.0%
CAATAGTTGTCAAACATAGA+AGG + chr4_3:65210311-65210330 Msa0656100:intron 30.0%
GTTAAATCAAGACATGCAAA+CGG - chr4_3:65210528-65210547 None:intergenic 30.0%
GTCTTGATTTAACCTTGTAA+TGG + chr4_3:65210535-65210554 Msa0656100:intron 30.0%
AAGAAATCAATGCAAAAGTG+AGG - chr4_3:65210613-65210632 None:intergenic 30.0%
!!! GTTACTTTTCACAGTACTTT+TGG + chr4_3:65210730-65210749 Msa0656100:intron 30.0%
TTAATTCAAAGCCTGATACA+GGG - chr4_3:65211175-65211194 None:intergenic 30.0%
AGTGAAAAATTGAAGGATAG+AGG + chr4_3:65211194-65211213 Msa0656100:CDS 30.0%
CAATGGTGAAAGTTACAAAT+AGG - chr4_3:65211348-65211367 None:intergenic 30.0%
ATTTGATTACTGTGAATGGT+AGG + chr4_3:65211551-65211570 Msa0656100:intron 30.0%
ATGAATGTGTAATAAGGGGA+GGG - chr4_3:65206380-65206399 None:intergenic 35.0%
AATGAATGTGTAATAAGGGG+AGG - chr4_3:65206381-65206400 None:intergenic 35.0%
! TTGATGCGAAGATTTTACAG+AGG + chr4_3:65206482-65206501 Msa0656100:CDS 35.0%
GAACAGAACAGAAGAAAACA+AGG - chr4_3:65206611-65206630 None:intergenic 35.0%
GAGAGACCCAGAAATAAAAA+TGG - chr4_3:65206644-65206663 None:intergenic 35.0%
TTACAATCCAAACAACCCAA+TGG - chr4_3:65206742-65206761 None:intergenic 35.0%
CAAATACAATAGGAAGTGGA+TGG - chr4_3:65206911-65206930 None:intergenic 35.0%
TGAGCAAATACAATAGGAAG+TGG - chr4_3:65206915-65206934 None:intergenic 35.0%
AACCATCTTCATTCATCTGA+GGG - chr4_3:65207186-65207205 None:intergenic 35.0%
AAACCATCTTCATTCATCTG+AGG - chr4_3:65207187-65207206 None:intergenic 35.0%
CAATAAACTCCAGTTCACAA+AGG - chr4_3:65207228-65207247 None:intergenic 35.0%
TGAACTGGAGTTTATTGTTG+TGG + chr4_3:65207231-65207250 Msa0656100:intron 35.0%
AAGCAGTAGCATTAGTAAAC+AGG - chr4_3:65207263-65207282 None:intergenic 35.0%
!! AGCCTTGTTTGGTTATGATA+TGG + chr4_3:65207478-65207497 Msa0656100:CDS 35.0%
ATGGTACTTCCTATGAATAC+TGG + chr4_3:65207497-65207516 Msa0656100:CDS 35.0%
GTTGAAGTTAGCAAGAAAGT+GGG + chr4_3:65207541-65207560 Msa0656100:CDS 35.0%
TTGAAGTTAGCAAGAAAGTG+GGG + chr4_3:65207542-65207561 Msa0656100:CDS 35.0%
!! AAATCAACTTTAAGATGGCC+TGG - chr4_3:65207927-65207946 None:intergenic 35.0%
!! GGCCATCTTAAAGTTGATTT+TGG + chr4_3:65207927-65207946 Msa0656100:CDS 35.0%
! GCACTCGAGAAAATTTTCAA+AGG + chr4_3:65207960-65207979 Msa0656100:CDS 35.0%
CCAAAATAAATGCAGCTATG+CGG - chr4_3:65208103-65208122 None:intergenic 35.0%
!!! TATTTTGGAACCTATCCAAG+GGG + chr4_3:65208115-65208134 Msa0656100:CDS 35.0%
!! TACAAGTCTTGTGACTTGTT+TGG + chr4_3:65208443-65208462 Msa0656100:intron 35.0%
! AACTAGACATCTTTTTCCTC+AGG - chr4_3:65208595-65208614 None:intergenic 35.0%
TCTATTGTGATACATGAGCA+CGG - chr4_3:65208667-65208686 None:intergenic 35.0%
!!! TACAAGTCTTGCGACTTTTT+TGG + chr4_3:65208816-65208835 Msa0656100:intron 35.0%
CAAAAACGGTACATTTCACA+TGG - chr4_3:65208917-65208936 None:intergenic 35.0%
ATTAGATCATGAACGAAAGC+CGG - chr4_3:65209063-65209082 None:intergenic 35.0%
TAATGTGAGAGCTATTCTAC+AGG - chr4_3:65209194-65209213 None:intergenic 35.0%
AGCTTTCAAATAACCATCTG+GGG - chr4_3:65209311-65209330 None:intergenic 35.0%
CAGCTTTCAAATAACCATCT+GGG - chr4_3:65209312-65209331 None:intergenic 35.0%
ACAGCTTTCAAATAACCATC+TGG - chr4_3:65209313-65209332 None:intergenic 35.0%
GATGTTTATAGCGAAGTACA+AGG - chr4_3:65209503-65209522 None:intergenic 35.0%
TTGCGAAGAATCGTATGATA+TGG - chr4_3:65209723-65209742 None:intergenic 35.0%
TGCATATTCACAGGAATAGA+AGG - chr4_3:65209887-65209906 None:intergenic 35.0%
AGTTTCTGATGCATATTCAC+AGG - chr4_3:65209896-65209915 None:intergenic 35.0%
CTAGGTAGATGCATTTAACT+AGG + chr4_3:65209970-65209989 Msa0656100:intron 35.0%
GGAAACTAAACCTCAGAAAA+AGG - chr4_3:65210100-65210119 None:intergenic 35.0%
GTGATGCTTTGTATAAAACC+TGG + chr4_3:65210223-65210242 Msa0656100:CDS 35.0%
! ACTTTTCACAGTACTTTTGG+TGG + chr4_3:65210733-65210752 Msa0656100:intron 35.0%
! TACTTTTGGTGGAAATCCAT+TGG + chr4_3:65210744-65210763 Msa0656100:CDS 35.0%
TTCTTTGATCACTTCAAGTG+AGG - chr4_3:65210788-65210807 None:intergenic 35.0%
TGCAACTGATGTCTTAGTAT+TGG + chr4_3:65211016-65211035 Msa0656100:intron 35.0%
GAAGATTCAGAAACAATACC+CGG + chr4_3:65211082-65211101 Msa0656100:CDS 35.0%
TAATTCAAAGCCTGATACAG+GGG - chr4_3:65211174-65211193 None:intergenic 35.0%
CTTAATTCAAAGCCTGATAC+AGG - chr4_3:65211176-65211195 None:intergenic 35.0%
!! AATTGTGTCATGTGTTGACT+TGG - chr4_3:65211228-65211247 None:intergenic 35.0%
TTTCTTACCTTATGCACAGT+GGG - chr4_3:65211265-65211284 None:intergenic 35.0%
TTGAGTTCACATGCACATTA+AGG + chr4_3:65211316-65211335 Msa0656100:intron 35.0%
TATAGCTAGTTGAGTACTTC+AGG + chr4_3:65211391-65211410 Msa0656100:intron 35.0%
! AATCCTTTGAGAGGACAAAA+AGG - chr4_3:65211624-65211643 None:intergenic 35.0%
! TTTTGTCCTCTCAAAGGATT+AGG + chr4_3:65211624-65211643 Msa0656100:intron 35.0%
AAGTAACCTAATCCTTTGAG+AGG - chr4_3:65211633-65211652 None:intergenic 35.0%
!!! TGTCCCTAATATTTTGGTCT+AGG + chr4_3:65211665-65211684 Msa0656100:intron 35.0%
TAAAAGTAATCCTTGCAGTG+CGG + chr4_3:65211696-65211715 Msa0656100:intron 35.0%
!!! GGCTTCATCTTTTTCAACAT+TGG - chr4_3:65211775-65211794 None:intergenic 35.0%
TTAACCAGATAATGAATGCC+TGG + chr4_3:65211858-65211877 Msa0656100:exon 35.0%
! TACAGAGGAACCAGAACTTT+TGG + chr4_3:65206497-65206516 Msa0656100:CDS 40.0%
! AATCACTCCATTGGGTTGTT+TGG + chr4_3:65206732-65206751 Msa0656100:intron 40.0%
ACGGATCTTGCTAATTACCA+AGG + chr4_3:65207025-65207044 Msa0656100:intron 40.0%
GTCATTCCGGTCTAAATTGT+CGG - chr4_3:65207063-65207082 None:intergenic 40.0%
! AACATGTGTCAGTGTCATTC+CGG - chr4_3:65207076-65207095 None:intergenic 40.0%
! CTTTAAAAGATCAGGCAGAC+AGG + chr4_3:65207393-65207412 Msa0656100:CDS 40.0%
GTCAAATACTCAGCAAACAC+CGG - chr4_3:65207458-65207477 None:intergenic 40.0%
!! GAGTATTTGACAGCCTTGTT+TGG + chr4_3:65207467-65207486 Msa0656100:CDS 40.0%
CTTTCTTGCTAACTTCAACG+CGG - chr4_3:65207540-65207559 None:intergenic 40.0%
CGTTGAAGTTAGCAAGAAAG+TGG + chr4_3:65207540-65207559 Msa0656100:CDS 40.0%
AACATGAGACAATAAGAGCC+TGG - chr4_3:65207821-65207840 None:intergenic 40.0%
GCTCTTATTGTCTCATGTTG+TGG + chr4_3:65207822-65207841 Msa0656100:CDS 40.0%
TGCTTCAATGGTCGTACATT+GGG + chr4_3:65207846-65207865 Msa0656100:CDS 40.0%
CATTAAAGGACCAAAACCAC+GGG - chr4_3:65207904-65207923 None:intergenic 40.0%
GCATTAAAGGACCAAAACCA+CGG - chr4_3:65207905-65207924 None:intergenic 40.0%
TTAAGATGGCCTGGCATTAA+AGG - chr4_3:65207918-65207937 None:intergenic 40.0%
! CCGCATAGCTGCATTTATTT+TGG + chr4_3:65208100-65208119 Msa0656100:CDS 40.0%
CTATGCGGTACATCATACAA+AGG - chr4_3:65208224-65208243 None:intergenic 40.0%
GTTAGACAACGAGTTCTATG+CGG - chr4_3:65208239-65208258 None:intergenic 40.0%
TAGAAACCTGCTAGGTTTCA+GGG - chr4_3:65208534-65208553 None:intergenic 40.0%
CTCTAATCTAGAAACCTGCT+AGG - chr4_3:65208542-65208561 None:intergenic 40.0%
! TTAGTCTTTGCAAGAAGGAC+TGG + chr4_3:65208624-65208643 Msa0656100:intron 40.0%
CTTTCAAATAACCATCTGGG+GGG - chr4_3:65209309-65209328 None:intergenic 40.0%
GCTTTCAAATAACCATCTGG+GGG - chr4_3:65209310-65209329 None:intergenic 40.0%
!! CAAACTGGATTAGCAAGAAC+AGG + chr4_3:65209382-65209401 Msa0656100:CDS 40.0%
AGCAAGAACAGGAAAAATGC+TGG + chr4_3:65209393-65209412 Msa0656100:CDS 40.0%
!! AAAAATGCTGGCTTGTGAGT+GGG + chr4_3:65209405-65209424 Msa0656100:CDS 40.0%
AGCTTGAAACTGACACTACA+TGG + chr4_3:65209642-65209661 Msa0656100:intron 40.0%
GACACTACATGGCAAGAAAT+AGG + chr4_3:65209653-65209672 Msa0656100:intron 40.0%
CTTGTCTGAGTCTTAGTCAA+TGG + chr4_3:65209914-65209933 Msa0656100:intron 40.0%
TGCATTTAACTAGGTACCAC+TGG + chr4_3:65209979-65209998 Msa0656100:intron 40.0%
! CAAACATAAGTTGGATGGTC+AGG - chr4_3:65210010-65210029 None:intergenic 40.0%
TCAGATACTAGGGAAAGCTT+TGG + chr4_3:65210156-65210175 Msa0656100:intron 40.0%
CAGATACTAGGGAAAGCTTT+GGG + chr4_3:65210157-65210176 Msa0656100:intron 40.0%
TGTATAAAACCTGGACAGCA+TGG + chr4_3:65210232-65210251 Msa0656100:CDS 40.0%
AGACCAATCAAGGGGTTTAA+GGG - chr4_3:65210359-65210378 None:intergenic 40.0%
AAGACCAATCAAGGGGTTTA+AGG - chr4_3:65210360-65210379 None:intergenic 40.0%
!! AAACCCCTTGATTGGTCTTA+TGG + chr4_3:65210361-65210380 Msa0656100:intron 40.0%
ACACCATAAGACCAATCAAG+GGG - chr4_3:65210367-65210386 None:intergenic 40.0%
CACACCATAAGACCAATCAA+GGG - chr4_3:65210368-65210387 None:intergenic 40.0%
TCACACCATAAGACCAATCA+AGG - chr4_3:65210369-65210388 None:intergenic 40.0%
AACAAAACTCCACCTTCTGT+TGG + chr4_3:65210396-65210415 Msa0656100:intron 40.0%
AGACTTCTGATTCCAACAGA+AGG - chr4_3:65210411-65210430 None:intergenic 40.0%
TTTGTGAATCCTTGTGTCCA+TGG + chr4_3:65210502-65210521 Msa0656100:intron 40.0%
TTTCACTAGTTCCCATAGGA+TGG - chr4_3:65210583-65210602 None:intergenic 40.0%
GCAATTTCACTAGTTCCCAT+AGG - chr4_3:65210587-65210606 None:intergenic 40.0%
CATCGATATCTCAAAGAGAG+TGG - chr4_3:65210987-65211006 None:intergenic 40.0%
ATTGGACAGATCTACCCAAA+TGG + chr4_3:65211034-65211053 Msa0656100:intron 40.0%
TTGGACAGATCTACCCAAAT+GGG + chr4_3:65211035-65211054 Msa0656100:intron 40.0%
TTCTTACCTTATGCACAGTG+GGG - chr4_3:65211264-65211283 None:intergenic 40.0%
CTTTCTTACCTTATGCACAG+TGG - chr4_3:65211266-65211285 None:intergenic 40.0%
! CATCCTTTTTGTCCTCTCAA+AGG + chr4_3:65211618-65211637 Msa0656100:intron 40.0%
TGAGATCCAACAAGGTTCTA+AGG + chr4_3:65211720-65211739 Msa0656100:CDS 40.0%
TAGACCAGGCATTCATTATC+TGG - chr4_3:65211865-65211884 None:intergenic 40.0%
ACTGGGAATAAGTGATCTCA+AGG - chr4_3:65212015-65212034 None:intergenic 40.0%
TGTGGCAACACCAAAAGTTC+TGG - chr4_3:65206510-65206529 None:intergenic 45.0%
!! TGGGAAGATGAAGAAGCGTT+GGG - chr4_3:65206536-65206555 None:intergenic 45.0%
! TTGGGAAGATGAAGAAGCGT+TGG - chr4_3:65206537-65206556 None:intergenic 45.0%
TGGCTACTCTGCAGTTAATC+AGG + chr4_3:65206992-65207011 Msa0656100:CDS 45.0%
!! GTAGCACCGACAATTTAGAC+CGG + chr4_3:65207054-65207073 Msa0656100:intron 45.0%
GTCCCTCAGATGAATGAAGA+TGG + chr4_3:65207181-65207200 Msa0656100:intron 45.0%
CCTTCAGCACCAGTATTCAT+AGG - chr4_3:65207509-65207528 None:intergenic 45.0%
! CCTATGAATACTGGTGCTGA+AGG + chr4_3:65207506-65207525 Msa0656100:CDS 45.0%
! TGCTGATGGAAACTTGTTCC+AGG + chr4_3:65207800-65207819 Msa0656100:intron 45.0%
TCATGTTGTGGCTGCTTCAA+TGG + chr4_3:65207834-65207853 Msa0656100:CDS 45.0%
CTGCTTCAATGGTCGTACAT+TGG + chr4_3:65207845-65207864 Msa0656100:CDS 45.0%
! AATGAAGCTACCCGTGGTTT+TGG + chr4_3:65207891-65207910 Msa0656100:CDS 45.0%
!! GGTTTTGGTCCTTTAATGCC+AGG + chr4_3:65207906-65207925 Msa0656100:CDS 45.0%
! CCTTTTTCTGCAGTTCAGCA+GGG - chr4_3:65208077-65208096 None:intergenic 45.0%
! TCCTTTTTCTGCAGTTCAGC+AGG - chr4_3:65208078-65208097 None:intergenic 45.0%
AGAAACCTGCTAGGTTTCAG+GGG - chr4_3:65208533-65208552 None:intergenic 45.0%
CTAGAAACCTGCTAGGTTTC+AGG - chr4_3:65208535-65208554 None:intergenic 45.0%
TGTGACAGTCCATCTTTGAC+CGG + chr4_3:65209041-65209060 Msa0656100:intron 45.0%
!! GAAAAATGCTGGCTTGTGAG+TGG + chr4_3:65209404-65209423 Msa0656100:CDS 45.0%
AGAAGTTCGTCCAGATGTAG+TGG + chr4_3:65209429-65209448 Msa0656100:CDS 45.0%
TGAACACCAACCACTACATC+TGG - chr4_3:65209442-65209461 None:intergenic 45.0%
AACATCATCCTGTCGTCACA+CGG + chr4_3:65209517-65209536 Msa0656100:intron 45.0%
TTTACTAACCGTGTGACGAC+AGG - chr4_3:65209528-65209547 None:intergenic 45.0%
CCTAGCTGCATACTTGCAAA+TGG - chr4_3:65209955-65209974 None:intergenic 45.0%
CCATTTGCAAGTATGCAGCT+AGG + chr4_3:65209952-65209971 Msa0656100:intron 45.0%
!! ATACTAGGGAAAGCTTTGGG+TGG + chr4_3:65210160-65210179 Msa0656100:CDS 45.0%
TAAAACCTGGACAGCATGGA+AGG + chr4_3:65210236-65210255 Msa0656100:CDS 45.0%
TTAAACCTTCCATGCTGTCC+AGG - chr4_3:65210244-65210263 None:intergenic 45.0%
CTTCTGATTCCAACAGAAGG+TGG - chr4_3:65210408-65210427 None:intergenic 45.0%
GATCACTTCAAGTGAGGCAA+TGG - chr4_3:65210782-65210801 None:intergenic 45.0%
!! AAGAAGAGAGACTTGCTGAG+AGG + chr4_3:65210803-65210822 Msa0656100:CDS 45.0%
GAAAGTTTGTCCCCTGTATC+AGG + chr4_3:65211161-65211180 Msa0656100:CDS 45.0%
TCTTACCTTATGCACAGTGG+GGG - chr4_3:65211263-65211282 None:intergenic 45.0%
! GTACTTCAGGTTATGCGTCT+TGG + chr4_3:65211404-65211423 Msa0656100:intron 45.0%
AATTTCCAGCACATCAGCGA+GGG - chr4_3:65211746-65211765 None:intergenic 45.0%
CACAACGATCACATGCACTA+GGG - chr4_3:65211822-65211841 None:intergenic 45.0%
!! TGAAGAAGCGTTGGGTTGTG+TGG - chr4_3:65206528-65206547 None:intergenic 50.0%
ATGCAAAGGGATCAGCTGTG+TGG + chr4_3:65206934-65206953 Msa0656100:CDS 50.0%
TGCAAAGGGATCAGCTGTGT+GGG + chr4_3:65206935-65206954 Msa0656100:CDS 50.0%
!! GTCGGTGCTACATAAAGCCT+TGG - chr4_3:65207045-65207064 None:intergenic 50.0%
CGATACAGACATGCTGACAC+CGG - chr4_3:65207129-65207148 None:intergenic 50.0%
! CGGTGTCAGCATGTCTGTAT+CGG + chr4_3:65207127-65207146 Msa0656100:intron 50.0%
! GTCTGTATCGGTGCTTCGTA+AGG + chr4_3:65207139-65207158 Msa0656100:intron 50.0%
! GAATACTGGTGCTGAAGGTG+TGG + chr4_3:65207511-65207530 Msa0656100:CDS 50.0%
TGTGACAATGAAGCTACCCG+TGG + chr4_3:65207885-65207904 Msa0656100:CDS 50.0%
CCCTGCTGAACTGCAGAAAA+AGG + chr4_3:65208074-65208093 Msa0656100:intron 50.0%
AACCTATCCAAGGGGAAGCT+GGG + chr4_3:65208123-65208142 Msa0656100:CDS 50.0%
GAAACCTGCTAGGTTTCAGG+GGG - chr4_3:65208532-65208551 None:intergenic 50.0%
GAACGAAAGCCGGTCAAAGA+TGG - chr4_3:65209053-65209072 None:intergenic 50.0%
GTTCGTCCAGATGTAGTGGT+TGG + chr4_3:65209433-65209452 Msa0656100:intron 50.0%
TCTGCAAGAACTGCGCTAAC+TGG - chr4_3:65210196-65210215 None:intergenic 50.0%
CCAATCAAGGGGTTTAAGGG+CGG - chr4_3:65210356-65210375 None:intergenic 50.0%
TCAAGACATGCAAACGGCCA+TGG - chr4_3:65210522-65210541 None:intergenic 50.0%
GACAGATCTACCCAAATGGG+AGG + chr4_3:65211038-65211057 Msa0656100:intron 50.0%
GAGAAGCTCACCTCCCATTT+GGG - chr4_3:65211051-65211070 None:intergenic 50.0%
CAAATGGGAGGTGAGCTTCT+CGG + chr4_3:65211050-65211069 Msa0656100:CDS 50.0%
ACAATACCCGGACCATGTGA+AGG + chr4_3:65211094-65211113 Msa0656100:CDS 50.0%
AGTGCGGATGAGATCCAACA+AGG + chr4_3:65211712-65211731 Msa0656100:intron 50.0%
CAATTTCCAGCACATCAGCG+AGG - chr4_3:65211747-65211766 None:intergenic 50.0%
CCACAACGATCACATGCACT+AGG - chr4_3:65211823-65211842 None:intergenic 50.0%
CCTAGTGCATGTGATCGTTG+TGG + chr4_3:65211820-65211839 Msa0656100:CDS 50.0%
ATCAGCTGTGTGGGATCCAG+AGG + chr4_3:65206944-65206963 Msa0656100:CDS 55.0%
TCAGCTGTGTGGGATCCAGA+GGG + chr4_3:65206945-65206964 Msa0656100:CDS 55.0%
AGATCAGGCAGACAGGCTGA+CGG + chr4_3:65207400-65207419 Msa0656100:CDS 55.0%
GAACCTATCCAAGGGGAAGC+TGG + chr4_3:65208122-65208141 Msa0656100:CDS 55.0%
ACCTATCCAAGGGGAAGCTG+GGG + chr4_3:65208124-65208143 Msa0656100:CDS 55.0%
AACATACCCCAGCTTCCCCT+TGG - chr4_3:65208133-65208152 None:intergenic 55.0%
TTCTCCCCCTGAAACCTAGC+AGG + chr4_3:65208525-65208544 Msa0656100:intron 55.0%
CAGGTGAAAATCCCCCCAGA+TGG + chr4_3:65209295-65209314 Msa0656100:intron 55.0%
GGATGGTCAGGTCTATCCAG+TGG - chr4_3:65209998-65210017 None:intergenic 55.0%
!! CTAGGGAAAGCTTTGGGTGG+AGG + chr4_3:65210163-65210182 Msa0656100:CDS 55.0%
CCGCCCTTAAACCCCTTGAT+TGG + chr4_3:65210353-65210372 Msa0656100:intron 55.0%
TGCAAACGGCCATGGACACA+AGG - chr4_3:65210514-65210533 None:intergenic 55.0%
! ATGGCAACTGCACTGGCCAA+TGG - chr4_3:65210763-65210782 None:intergenic 55.0%
TGAGGCAATGGCAACTGCAC+TGG - chr4_3:65210770-65210789 None:intergenic 55.0%
CGAGAAGCTCACCTCCCATT+TGG - chr4_3:65211052-65211071 None:intergenic 55.0%
ATACCCGGACCATGTGAAGG+AGG + chr4_3:65211097-65211116 Msa0656100:CDS 55.0%
CGGGGAAGAGGACTGTTCAT+TGG + chr4_3:65211122-65211141 Msa0656100:CDS 55.0%
TCACTCCCCCACTGTGCATA+AGG + chr4_3:65211255-65211274 Msa0656100:CDS 55.0%
TGGATCTCATCCGCACTGCA+AGG - chr4_3:65211709-65211728 None:intergenic 55.0%
CGAGGGCCTTAGAACCTTGT+TGG - chr4_3:65211729-65211748 None:intergenic 55.0%
! GCTGGAGGAGCAGCATCTTT+TGG - chr4_3:65211796-65211815 None:intergenic 55.0%
AAAGATGCTGCTCCTCCAGC+TGG + chr4_3:65211796-65211815 Msa0656100:CDS 55.0%
CGTTGTGGTCGAGTCGTGTA+TGG + chr4_3:65211835-65211854 Msa0656100:CDS 55.0%
ACCCCAGCTTCCCCTTGGAT+AGG - chr4_3:65208128-65208147 None:intergenic 60.0%
GCACCTCCTTCACATGGTCC+GGG - chr4_3:65211103-65211122 None:intergenic 60.0%
CGCACCTCCTTCACATGGTC+CGG - chr4_3:65211104-65211123 None:intergenic 60.0%
CGGACCATGTGAAGGAGGTG+CGG + chr4_3:65211102-65211121 Msa0656100:CDS 60.0%
! GGACCATGTGAAGGAGGTGC+GGG + chr4_3:65211103-65211122 Msa0656100:CDS 60.0%
! GACCATGTGAAGGAGGTGCG+GGG + chr4_3:65211104-65211123 Msa0656100:CDS 60.0%
TTCCCCGCACCTCCTTCACA+TGG - chr4_3:65211109-65211128 None:intergenic 60.0%
TAAGGCCCTCGCTGATGTGC+TGG + chr4_3:65211738-65211757 Msa0656100:CDS 60.0%
TCACATGCACTAGGGCCAGC+TGG - chr4_3:65211814-65211833 None:intergenic 60.0%
! GTGAAGGAGGTGCGGGGAAG+AGG + chr4_3:65211110-65211129 Msa0656100:CDS 65.0%
CATGCACTAGGGCCAGCTGG+AGG - chr4_3:65211811-65211830 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 65206377 65212049 65206377 ID=Msa0656100;Name=Msa0656100
chr4_3 mRNA 65206377 65212049 65206377 ID=Msa0656100-mRNA-1;Parent=Msa0656100;Name=Msa0656100-mRNA-1;_AED=0.00;_eAED=0.00;_QI=78|1|1|1|1|1|10|188|469
chr4_3 exon 65206377 65206594 65206377 ID=Msa0656100-mRNA-1:exon:18486;Parent=Msa0656100-mRNA-1
chr4_3 exon 65206905 65207013 65206905 ID=Msa0656100-mRNA-1:exon:18487;Parent=Msa0656100-mRNA-1
chr4_3 exon 65207365 65207595 65207365 ID=Msa0656100-mRNA-1:exon:18488;Parent=Msa0656100-mRNA-1
chr4_3 exon 65207822 65207981 65207822 ID=Msa0656100-mRNA-1:exon:18489;Parent=Msa0656100-mRNA-1
chr4_3 exon 65208090 65208145 65208090 ID=Msa0656100-mRNA-1:exon:18490;Parent=Msa0656100-mRNA-1
chr4_3 exon 65209298 65209450 65209298 ID=Msa0656100-mRNA-1:exon:18491;Parent=Msa0656100-mRNA-1
chr4_3 exon 65210160 65210257 65210160 ID=Msa0656100-mRNA-1:exon:18492;Parent=Msa0656100-mRNA-1
chr4_3 exon 65210744 65210824 65210744 ID=Msa0656100-mRNA-1:exon:18493;Parent=Msa0656100-mRNA-1
chr4_3 exon 65211043 65211276 65211043 ID=Msa0656100-mRNA-1:exon:18494;Parent=Msa0656100-mRNA-1
chr4_3 exon 65211714 65212049 65211714 ID=Msa0656100-mRNA-1:exon:18495;Parent=Msa0656100-mRNA-1
chr4_3 five_prime_UTR 65206377 65206454 65206377 ID=Msa0656100-mRNA-1:five_prime_utr;Parent=Msa0656100-mRNA-1
chr4_3 CDS 65206455 65206594 65206455 ID=Msa0656100-mRNA-1:cds;Parent=Msa0656100-mRNA-1
chr4_3 CDS 65206905 65207013 65206905 ID=Msa0656100-mRNA-1:cds;Parent=Msa0656100-mRNA-1
chr4_3 CDS 65207365 65207595 65207365 ID=Msa0656100-mRNA-1:cds;Parent=Msa0656100-mRNA-1
chr4_3 CDS 65207822 65207981 65207822 ID=Msa0656100-mRNA-1:cds;Parent=Msa0656100-mRNA-1
chr4_3 CDS 65208090 65208145 65208090 ID=Msa0656100-mRNA-1:cds;Parent=Msa0656100-mRNA-1
chr4_3 CDS 65209298 65209450 65209298 ID=Msa0656100-mRNA-1:cds;Parent=Msa0656100-mRNA-1
chr4_3 CDS 65210160 65210257 65210160 ID=Msa0656100-mRNA-1:cds;Parent=Msa0656100-mRNA-1
chr4_3 CDS 65210744 65210824 65210744 ID=Msa0656100-mRNA-1:cds;Parent=Msa0656100-mRNA-1
chr4_3 CDS 65211043 65211276 65211043 ID=Msa0656100-mRNA-1:cds;Parent=Msa0656100-mRNA-1
chr4_3 CDS 65211714 65211861 65211714 ID=Msa0656100-mRNA-1:cds;Parent=Msa0656100-mRNA-1
chr4_3 three_prime_UTR 65211862 65212049 65211862 ID=Msa0656100-mRNA-1:three_prime_utr;Parent=Msa0656100-mRNA-1
Gene Sequence

>Msa0656100

ATGGCTTCAACAAGACAAGTACAGTGTTTGATGCGAAGATTTTACAGAGGAACCAGAACTTTTGGTGTTGCCACACAACCCAACGCTTCTTCATCTTCCCAAACAATCATTGACAAAGAATTTCAACACAGTGCCCACAATTACCATCCACTTCCTATTGTATTTGCTCATGCAAAGGGATCAGCTGTGTGGGATCCAGAGGGAAACAAATATATTGATTTTTTATCTGGCTACTCTGCAGTTAATCAGGGACATTGTCATCCTAAAATTCTTAAAGCTTTAAAAGATCAGGCAGACAGGCTGACGGTGAGCTCACGAGCTTTCTACAATGATCGTTTTCCGGTGTTTGCTGAGTATTTGACAGCCTTGTTTGGTTATGATATGGTACTTCCTATGAATACTGGTGCTGAAGGTGTGGAAACCGCGTTGAAGTTAGCAAGAAAGTGGGGTTATGAAAAGAAAAAAATTCCCAACAATGAGGCTCTTATTGTCTCATGTTGTGGCTGCTTCAATGGTCGTACATTGGGTGTCATATCTATGAGTTGTGACAATGAAGCTACCCGTGGTTTTGGTCCTTTAATGCCAGGCCATCTTAAAGTTGATTTTGGTGATGCAGAAGCACTCGAGAAAATTTTCAAAGAAAAAGGAGACCGCATAGCTGCATTTATTTTGGAACCTATCCAAGGGGAAGCTGGGGTGAAAATCCCCCCAGATGGTTATTTGAAAGCTGTTAGAGATCTTTGTTCCAAATATAACGTGTTGATGATTGCTGATGAAATACAAACTGGATTAGCAAGAACAGGAAAAATGCTGGCTTGTGAGTGGGAAGAAGTTCGTCCAGATGTAGTGATACTAGGGAAAGCTTTGGGTGGAGGAATTATTCCAGTTAGCGCAGTTCTTGCAGACAAAGAAGTGATGCTTTGTATAAAACCTGGACAGCATGGAAGTACTTTTGGTGGAAATCCATTGGCCAGTGCAGTTGCCATTGCCTCACTTGAAGTGATCAAAGAAGAGAGACTTGCTGAGAGATCTACCCAAATGGGAGGTGAGCTTCTCGGTCTGCTGCAGAAGATTCAGAAACAATACCCGGACCATGTGAAGGAGGTGCGGGGAAGAGGACTGTTCATTGGAGTCGAGCTTAACAGCGAAAGTTTGTCCCCTGTATCAGGCTTTGAATTAAGTGAAAAATTGAAGGATAGAGGAGTTCTTGCCAAGTCAACACATGACACAATTATTCGCTTCACTCCCCCACTGTGCATAAGTGCGGATGAGATCCAACAAGGTTCTAAGGCCCTCGCTGATGTGCTGGAAATTGATCTACCAATGTTGAAAAAGATGAAGCCAAAAGATGCTGCTCCTCCAGCTGGCCCTAGTGCATGTGATCGTTGTGGTCGAGTCGTGTATGGTTAA

Protein sequence

>Msa0656100

MASTRQVQCLMRRFYRGTRTFGVATQPNASSSSQTIIDKEFQHSAHNYHPLPIVFAHAKGSAVWDPEGNKYIDFLSGYSAVNQGHCHPKILKALKDQADRLTVSSRAFYNDRFPVFAEYLTALFGYDMVLPMNTGAEGVETALKLARKWGYEKKKIPNNEALIVSCCGCFNGRTLGVISMSCDNEATRGFGPLMPGHLKVDFGDAEALEKIFKEKGDRIAAFILEPIQGEAGVKIPPDGYLKAVRDLCSKYNVLMIADEIQTGLARTGKMLACEWEEVRPDVVILGKALGGGIIPVSAVLADKEVMLCIKPGQHGSTFGGNPLASAVAIASLEVIKEERLAERSTQMGGELLGLLQKIQKQYPDHVKEVRGRGLFIGVELNSESLSPVSGFELSEKLKDRGVLAKSTHDTIIRFTPPLCISADEIQQGSKALADVLEIDLPMLKKMKPKDAAPPAGPSACDRCGRVVYG*