AlfalfaGEDB | Msa0566240

M. sativa cultivar zhongmu-4 / Msa0566240

KEGG: -
GO: -
PFAM: PF01571.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0566240	XP_003629967.1	95.261	422	15	2	1	417	1	422	0.0	823

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0566240	sp\|Q681Y3\|Y1099_ARATH	68.564	404	115	3	26	417	29	432	0.0	575

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0566240	G7L8V3	95.261	422	15	2	1	417	1	422	0.0	823

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0566240	Msa0749160	0.830169	3.416839e-55	-8.615850e-47
Msa0566240	Msa0927190	0.809157	2.173979e-50	-8.615850e-47
Msa0566240	Msa0999480	0.819998	8.650293e-53	-8.615850e-47
Msa0566240	Msa1067910	0.811869	5.642987e-51	-8.615850e-47
Msa0566240	Msa1071380	0.805731	1.158727e-49	-8.615850e-47
Msa0566240	Msa1076120	0.800001	1.768836e-48	-8.615850e-47
Msa0566240	Msa1223050	0.810306	1.231030e-50	-8.615850e-47
Msa0566240	Msa1395580	0.815949	7.111515e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0566240	MtrunA17_Chr8g0380691	95.261	422	15	2	1	417	1	422	0.0	823

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0566240	AT1G60990.3	68.564	404	115	3	26	417	29	432	0.0	575
Msa0566240	AT1G60990.2	68.564	404	115	3	26	417	29	432	0.0	575
Msa0566240	AT1G60990.1	68.564	404	115	3	26	417	29	432	0.0	575
Msa0566240	AT1G11860.2	25.444	338	231	11	88	408	70	403	9.10e-13	70.1
Msa0566240	AT1G11860.1	25.444	338	231	11	88	408	70	403	9.10e-13	70.1
Msa0566240	AT1G11860.3	25.444	338	231	11	88	408	85	418	9.52e-13	70.1

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Find 119 sgRNAs with CRISPR-Local

Find 455 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGAATTCAACGTCCTGG+AGG	0.732724	4_1:-67278914	Msa0566240:CDS
AAATGAAAGTACCTCTTATC+CGG	0.476064	4_1:+67283070	None:intergenic
AAATGTTGATAAGTGCCATA+TGG	0.444800	4_1:+67282067	None:intergenic
AAATTGACTAGTTACACCTC+TGG	0.573087	4_1:-67278239	Msa0566240:CDS
AACTCAATTTCTCTAAACAA+GGG	0.653020	4_1:-67278880	Msa0566240:intron
AACTTTGAGGGTCTACAGGC+AGG	0.423954	4_1:-67282809	Msa0566240:CDS
AAGAACAACATGATACTACA+TGG	0.631653	4_1:+67277890	None:intergenic
AAGAAGTCATGGTCGATGGG+TGG	0.621241	4_1:+67284701	None:intergenic
AAGAGGCAAGCTGCTTCAGA+AGG	0.575817	4_1:-67278179	Msa0566240:CDS
AAGGACAGGAGACTATAGCC+AGG	0.644196	4_1:-67278765	Msa0566240:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTAAATTGGATGGATATTC+TGG	-	chr4_1:67277875-67277894	Msa0566240:three_prime_UTR	30.0%
TTTGAGAGTAAACAAGGTTT+GGG	+	chr4_1:67278040-67278059	None:intergenic	30.0%
TAATCCCTGTCAATGAAAAT+AGG	+	chr4_1:67278561-67278580	None:intergenic	30.0%
AGGCATCATAATCATATACA+AGG	-	chr4_1:67278746-67278765	Msa0566240:CDS	30.0%
ATGTATAAGAACCATAGTGT+AGG	+	chr4_1:67278780-67278799	None:intergenic	30.0%
ACTCATACTATAAGCACATA+CGG	+	chr4_1:67278860-67278879	None:intergenic	30.0%
ACTCAAATTAATCCTTGTAC+CGG	+	chr4_1:67278932-67278951	None:intergenic	30.0%
TCTCGAGAGCAAAAAAATTA+AGG	-	chr4_1:67279094-67279113	Msa0566240:intron	30.0%
ATTATTACCTTTACTGTTGC+AGG	-	chr4_1:67279145-67279164	Msa0566240:intron	30.0%
CTAGCTTACATGACTTTAAT+GGG	-	chr4_1:67279507-67279526	Msa0566240:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	67277858	67285004	67277858	ID=Msa0566240;Name=Msa0566240
chr4_1	mRNA	67277858	67285004	67277858	ID=Msa0566240-mRNA-1;Parent=Msa0566240;Name=Msa0566240-mRNA-1;_AED=0.07;_eAED=0.07;_QI=60\|1\|1\|1\|0.91\|0.84\|13\|224\|417
chr4_1	exon	67277858	67278267	67277858	ID=Msa0566240-mRNA-1:exon:22026;Parent=Msa0566240-mRNA-1
chr4_1	exon	67278669	67278796	67278669	ID=Msa0566240-mRNA-1:exon:22025;Parent=Msa0566240-mRNA-1
chr4_1	exon	67278881	67278964	67278881	ID=Msa0566240-mRNA-1:exon:22024;Parent=Msa0566240-mRNA-1
chr4_1	exon	67281395	67281560	67281395	ID=Msa0566240-mRNA-1:exon:22023;Parent=Msa0566240-mRNA-1
chr4_1	exon	67282063	67282128	67282063	ID=Msa0566240-mRNA-1:exon:22022;Parent=Msa0566240-mRNA-1
chr4_1	exon	67282203	67282290	67282203	ID=Msa0566240-mRNA-1:exon:22021;Parent=Msa0566240-mRNA-1
chr4_1	exon	67282431	67282495	67282431	ID=Msa0566240-mRNA-1:exon:22020;Parent=Msa0566240-mRNA-1
chr4_1	exon	67282606	67282671	67282606	ID=Msa0566240-mRNA-1:exon:22019;Parent=Msa0566240-mRNA-1
chr4_1	exon	67282805	67282878	67282805	ID=Msa0566240-mRNA-1:exon:22018;Parent=Msa0566240-mRNA-1
chr4_1	exon	67283082	67283115	67283082	ID=Msa0566240-mRNA-1:exon:22017;Parent=Msa0566240-mRNA-1
chr4_1	exon	67283594	67283695	67283594	ID=Msa0566240-mRNA-1:exon:22016;Parent=Msa0566240-mRNA-1
chr4_1	exon	67284700	67284915	67284700	ID=Msa0566240-mRNA-1:exon:22015;Parent=Msa0566240-mRNA-1
chr4_1	exon	67284966	67285004	67284966	ID=Msa0566240-mRNA-1:exon:22014;Parent=Msa0566240-mRNA-1
chr4_1	five_prime_UTR	67284966	67285004	67284966	ID=Msa0566240-mRNA-1:five_prime_utr;Parent=Msa0566240-mRNA-1
chr4_1	five_prime_UTR	67284895	67284915	67284895	ID=Msa0566240-mRNA-1:five_prime_utr;Parent=Msa0566240-mRNA-1
chr4_1	CDS	67284700	67284894	67284700	ID=Msa0566240-mRNA-1:cds;Parent=Msa0566240-mRNA-1
chr4_1	CDS	67283594	67283695	67283594	ID=Msa0566240-mRNA-1:cds;Parent=Msa0566240-mRNA-1
chr4_1	CDS	67283082	67283115	67283082	ID=Msa0566240-mRNA-1:cds;Parent=Msa0566240-mRNA-1
chr4_1	CDS	67282805	67282878	67282805	ID=Msa0566240-mRNA-1:cds;Parent=Msa0566240-mRNA-1
chr4_1	CDS	67282606	67282671	67282606	ID=Msa0566240-mRNA-1:cds;Parent=Msa0566240-mRNA-1
chr4_1	CDS	67282431	67282495	67282431	ID=Msa0566240-mRNA-1:cds;Parent=Msa0566240-mRNA-1
chr4_1	CDS	67282203	67282290	67282203	ID=Msa0566240-mRNA-1:cds;Parent=Msa0566240-mRNA-1
chr4_1	CDS	67282063	67282128	67282063	ID=Msa0566240-mRNA-1:cds;Parent=Msa0566240-mRNA-1
chr4_1	CDS	67281395	67281560	67281395	ID=Msa0566240-mRNA-1:cds;Parent=Msa0566240-mRNA-1
chr4_1	CDS	67278881	67278964	67278881	ID=Msa0566240-mRNA-1:cds;Parent=Msa0566240-mRNA-1
chr4_1	CDS	67278669	67278796	67278669	ID=Msa0566240-mRNA-1:cds;Parent=Msa0566240-mRNA-1
chr4_1	CDS	67278082	67278267	67278082	ID=Msa0566240-mRNA-1:cds;Parent=Msa0566240-mRNA-1
chr4_1	three_prime_UTR	67277858	67278081	67277858	ID=Msa0566240-mRNA-1:three_prime_utr;Parent=Msa0566240-mRNA-1

Gene Sequence

>Msa0566240

ATGACAACACTGTCACTACCATCTTGCTTCAAACTTCGAAACCAACCATGGTCTCCATCTTCTCTATTCCCCAAACCTTGTTTACTCTCAAACCTCAGATTCTGCTCTCACCAACGCAACAAGAACAAGAATCAAATTTCTGCTCAATCCTCATCTTTCGACCTTTCCCCTCCACCCATCGACCATGACTTCTTGGACACTGTCAAAACTGCAGGTGCCGAGGTTTCTGGGGAAGGGATCGTTGAAACATTTCATAACGATGAAGAAGCACTGGACGCCGCAGACAATGGGGTTGTTGTTGTGGATCTTTCACACTTCGGCCGGATAAGAGTCAGTGGAGATGATCGCGTTCAGTTCCTTCACAACCAGAGTACTGCAAACTTTGAGGGTCTACAGGCAGGGCAAGGATGTGACACTGTTTTTGTAACACCAACAGCTCGAACTATAGATATTGCACATGCGTGGATCATGAAAAATGCAATAATGTTGGTGGTTTCAGCAGAGACTTGTAGGACCATTACCGAAATGCTGAACAAGTACATATTTTTTGCTGATAAGGTAGAGATTCAAGACATCACGAAGCAAACGAGCTTATTTGTTTTGGCAGGACCCAAAAGTAGCCAAGTGATGGAAAGCTTGAACGTAGGTGATCTTATTGGAAAACCATATGGCACTTATCAACATTTTTATGTTGATAAGCAGCCTATAACTATAGGAGTTGGAAATATCATTTCTGAAGGTGGTTTTTCATTGATGATGTCTCCGGCAGCTGCTCCATCTGTCTGGAAAGCTATTCTTGCTCAAGGGGCTGTTGCAATGGGTTCTAATGCTTGGAATAAGTTGCGAGTTATCCAAGGAAGGCCTGCTCCTGGAATGGAGCTCACAAACGAATTCAACGTCCTGGAGGCCTGTCTATGGAACTCAATTTCTCTAAACAAGGGTTGTTACAAAGGACAGGAGACTATAGCCAGGCTCATAACATATGATGGAGTCAAACAGAGGTTATGGGGATTTCATCTTTCTGCAGCCGCAGAACCTGGTAGTATTATCACTGTGGATGGAAAAAAGGTTGGGAAATTGACTAGTTACACCTCTGGAAGGAAGCCATCGGAACACTTCGGATTAGGTTACATCAAGAGGCAAGCTGCTTCAGAAGGAGACAGTGTAATTGTTGGAGACAACATCATTGGAACAATAGTTGAAGTACCTTTTCTTTCTCAACAGCGTCCGCCATCTGGTAGTTCAAAATCTTGA

Protein sequence

>Msa0566240

MTTLSLPSCFKLRNQPWSPSSLFPKPCLLSNLRFCSHQRNKNKNQISAQSSSFDLSPPPIDHDFLDTVKTAGAEVSGEGIVETFHNDEEALDAADNGVVVVDLSHFGRIRVSGDDRVQFLHNQSTANFEGLQAGQGCDTVFVTPTARTIDIAHAWIMKNAIMLVVSAETCRTITEMLNKYIFFADKVEIQDITKQTSLFVLAGPKSSQVMESLNVGDLIGKPYGTYQHFYVDKQPITIGVGNIISEGGFSLMMSPAAAPSVWKAILAQGAVAMGSNAWNKLRVIQGRPAPGMELTNEFNVLEACLWNSISLNKGCYKGQETIARLITYDGVKQRLWGFHLSAAAEPGSIITVDGKKVGKLTSYTSGRKPSEHFGLGYIKRQAASEGDSVIVGDNIIGTIVEVPFLSQQRPPSGSSKS*