AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1223050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1223050 MtrunA17_Chr4g0074531 98.081 521 10 0 1 521 1 521 0.0 1065
Msa1223050 MtrunA17_Chr3g0141761 68.397 443 140 0 79 521 88 530 0.0 660
Msa1223050 MtrunA17_Chr4g0035171 64.224 464 162 2 61 521 66 528 0.0 656
Msa1223050 MtrunA17_Chr7g0271011 62.815 476 166 2 57 521 61 536 0.0 632
Msa1223050 MtrunA17_Chr0c30g0494071 69.231 481 37 6 74 521 13 415 0.0 616
Msa1223050 MtrunA17_Chr5g0447341 57.882 425 172 4 99 521 96 515 0.0 518
Msa1223050 MtrunA17_Chr3g0120471 53.785 502 208 9 25 521 29 511 6.32e-180 515
Msa1223050 MtrunA17_Chr3g0144741 69.531 256 77 1 82 337 80 334 1.81e-128 379
Msa1223050 MtrunA17_Chr3g0144731 62.500 160 59 1 362 521 3 161 2.92e-68 216
Msa1223050 MtrunA17_Chr0c30g0494061 93.939 66 4 0 10 75 1 66 2.84e-36 129
Msa1223050 MtrunA17_Chr4g0077071 45.946 74 39 1 354 426 2 75 7.66e-15 70.1
Msa1223050 MtrunA17_Chr6g0454161 41.860 86 42 2 400 479 92 175 2.86e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1223050 AT5G19220.1 78.817 524 106 3 1 521 1 522 0.0 865
Msa1223050 AT1G27680.1 67.735 468 151 0 54 521 51 518 0.0 687
Msa1223050 AT4G39210.2 61.966 468 173 3 58 521 55 521 0.0 628
Msa1223050 AT4G39210.1 61.966 468 173 3 58 521 55 521 0.0 628
Msa1223050 AT2G21590.2 63.920 449 159 2 75 521 76 523 0.0 614
Msa1223050 AT2G21590.3 63.920 449 159 2 75 521 76 523 0.0 614
Msa1223050 AT2G21590.5 63.920 449 159 2 75 521 76 523 0.0 614
Msa1223050 AT2G21590.4 63.920 449 159 2 75 521 76 523 0.0 614
Msa1223050 AT2G21590.7 63.920 449 159 2 75 521 76 523 0.0 614
Msa1223050 AT2G21590.1 63.920 449 159 2 75 521 76 523 0.0 614
Msa1223050 AT2G21590.6 63.920 449 159 2 75 521 76 523 0.0 614
Msa1223050 AT5G48300.1 54.564 482 211 5 42 521 45 520 0.0 522
Msa1223050 AT1G05610.1 40.878 433 236 9 87 515 54 470 2.56e-110 337
Msa1223050 AT1G05610.2 40.367 436 240 9 87 515 54 476 4.64e-109 333

Find 140 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTCAAATGTTCATTTAA+AGG 0.138712 8_1:+87460483 Msa1223050:CDS
CTGGTGGATACAATTGTATT+TGG 0.249701 8_1:+87456354 Msa1223050:five_prime_UTR
AGATACTTCTTAATCTATTA+AGG 0.264868 8_1:+87459269 Msa1223050:CDS
TCCTCAAATCCGTGGTAAAA+TGG 0.265578 8_1:-87461311 None:intergenic
TTTCGGTTCCTACTTGATTT+TGG 0.266526 8_1:-87460845 None:intergenic
TTTCTACTGGTCACCATTCC+TGG 0.267523 8_1:-87456621 None:intergenic
CTTATCTCTTCAACGATTAC+TGG 0.268611 8_1:+87459917 Msa1223050:CDS
GCTTTGAGCTCTGCTCCTTT+AGG 0.279836 8_1:-87459062 None:intergenic
TCACCGGAGGAGGGACAAAA+TGG 0.309271 8_1:-87456532 None:intergenic
TTCCAATTGGAGGTGCTTAT+AGG 0.311709 8_1:+87458090 Msa1223050:CDS
TATAGCCGCGCCTCAGATTT+CGG 0.318771 8_1:+87458990 Msa1223050:intron
CCTCTACCGTATGGACTATA+TGG 0.343087 8_1:+87458688 Msa1223050:CDS
ATCACTACGCATTTGAAGAT+TGG 0.360996 8_1:-87456387 None:intergenic
ATGCTGTGCGGCAGTTTCAC+TGG 0.369035 8_1:+87458466 Msa1223050:CDS
TTTGCTCGTCGCTTAGTTAG+AGG 0.376799 8_1:-87457692 None:intergenic
TCCGGTACTGGAGTCACTTT+CGG 0.387235 8_1:+87458224 Msa1223050:CDS
ACTCCCATCGAAGCAATATA+TGG 0.390391 8_1:-87459229 None:intergenic
TTCCTAAATTAGGTTCCAAT+TGG 0.393610 8_1:+87458077 Msa1223050:intron
GATGCTAAGATAGACAGAAT+TGG 0.399039 8_1:-87461426 None:intergenic
CGTGGCGTTTGTAACAAAAC+TGG 0.411332 8_1:+87456335 Msa1223050:five_prime_UTR
TTTCCAACTGCAAATGACTT+TGG 0.412063 8_1:+87459447 Msa1223050:CDS
CGTGCTTACAACTCCGGTAC+TGG 0.418287 8_1:+87458212 Msa1223050:CDS
CACAATGGATATAAATAGAT+TGG 0.419416 8_1:+87461383 Msa1223050:three_prime_UTR
CACAACCTTCAAGTTTCTAC+TGG 0.421899 8_1:-87456634 None:intergenic
GGAATTTGATTTGTTAATGA+AGG 0.423588 8_1:-87456510 None:intergenic
TTCATAGAGCATAGTGTAGT+TGG 0.423776 8_1:+87460445 Msa1223050:CDS
GGAAGAGTTCCAATAGGAAT+AGG 0.426216 8_1:+87460814 Msa1223050:CDS
ATCCTCAATATCCTTGCTCC+TGG 0.426326 8_1:-87458642 None:intergenic
ATGCTAAGATAGACAGAATT+GGG 0.433944 8_1:-87461425 None:intergenic
CTATTGATGCAGTTACTCAT+TGG 0.434110 8_1:-87458125 None:intergenic
ATAACTGCCACGACTGTACT+TGG 0.437008 8_1:-87457638 None:intergenic
AGCCTATAAGCACCTCCAAT+TGG 0.440968 8_1:-87458092 None:intergenic
CAAGTGGATACAACCGTTCT+CGG 0.442588 8_1:+87459178 Msa1223050:CDS
GTTATACTTGGTGGAGGAGC+TGG 0.446891 8_1:+87457656 Msa1223050:CDS
TCACTACGCATTTGAAGATT+GGG 0.449428 8_1:-87456386 None:intergenic
CACTCTTTCTTGTCTGCCAA+TGG 0.453178 8_1:+87458852 Msa1223050:CDS
CTAAATTAGGTTCCAATTGG+AGG 0.458441 8_1:+87458080 Msa1223050:intron
GACAGAATTGGGATATAAGA+TGG 0.461311 8_1:-87461414 None:intergenic
ATGAGTAACTGCATCAATAG+TGG 0.461743 8_1:+87458128 Msa1223050:CDS
TAAAATTCTTTAGCTGAGGC+AGG 0.478517 8_1:-87459483 None:intergenic
ACCGTTCAGCTACGTGAGCC+AGG 0.478588 8_1:+87456603 Msa1223050:CDS
TTTCTCCTTGATGTGTACAT+AGG 0.483924 8_1:-87460225 None:intergenic
AAAATGGTTCAAACAAATGA+TGG 0.486066 8_1:-87461295 None:intergenic
ATCCTTCGAAAGACCGAGAA+CGG 0.487671 8_1:-87459191 None:intergenic
AGAAATGAGATTTGTAAAGC+TGG 0.488846 8_1:+87461549 Msa1223050:three_prime_UTR
TCATTTAGTGAAAAGCCTAA+AGG 0.496100 8_1:+87459047 Msa1223050:CDS
TTTGTCCCTCCTCCGGTGAT+CGG 0.496381 8_1:+87456536 Msa1223050:five_prime_UTR
CTTGTCTGCCAATGGATGAC+AGG 0.496401 8_1:+87458860 Msa1223050:CDS
CTTGCTGCAACTCAAACTCC+AGG 0.496669 8_1:+87458408 Msa1223050:CDS
GCAGTTTCACTGGCTCTTTG+AGG 0.499205 8_1:+87458476 Msa1223050:CDS
GGTGACCAGTAGAAACTTGA+AGG 0.503646 8_1:+87456629 Msa1223050:CDS
AACCGTTCTCGGTCTTTCGA+AGG 0.506684 8_1:+87459189 Msa1223050:CDS
GCTGAGGGAAGAGTTCCAAT+AGG 0.519229 8_1:+87460808 Msa1223050:CDS
ATACAGGACACAGTGATGCT+TGG 0.524075 8_1:+87460742 Msa1223050:intron
AAAACCATATATTGCTTCGA+TGG 0.524539 8_1:+87459225 Msa1223050:CDS
AAAATTCAACAATTGAAGAC+GGG 0.524972 8_1:+87461251 Msa1223050:CDS
TCCCAGGAGCAAGGATATTG+AGG 0.529538 8_1:+87458640 Msa1223050:CDS
ACAGTCGTGGCAGTTATACT+TGG 0.529938 8_1:+87457644 Msa1223050:CDS
GTCGTGGCAGTTATACTTGG+TGG 0.532140 8_1:+87457647 Msa1223050:CDS
ACTGGAGTCACTTTCGGAGA+TGG 0.533530 8_1:+87458230 Msa1223050:CDS
GATCCAAAGTCATTTGCAGT+TGG 0.534676 8_1:-87459450 None:intergenic
TCCGAAAGTGACTCCAGTAC+CGG 0.535857 8_1:-87458225 None:intergenic
TACCATCAGATCATTCTTTG+AGG 0.536197 8_1:+87459951 Msa1223050:CDS
CCATATAGTCCATACGGTAG+AGG 0.536873 8_1:-87458688 None:intergenic
TTATCTCTTCAACGATTACT+GGG 0.537052 8_1:+87459918 Msa1223050:CDS
GAGCTTCATGCTGCTACCAA+TGG 0.540764 8_1:+87456693 Msa1223050:CDS
CACCGGAGGAGGGACAAAAT+GGG 0.542471 8_1:-87456531 None:intergenic
AACACTCTTGGTGCAACCAT+TGG 0.542518 8_1:-87456709 None:intergenic
TGCATCGTAAAAGCTAAACT+TGG 0.547364 8_1:-87460196 None:intergenic
TTGCTATTGTCAATCTTCGA+TGG 0.549202 8_1:-87460255 None:intergenic
CTATGAAACTGAGGCAGAAG+TGG 0.552867 8_1:+87460774 Msa1223050:CDS
TTGCTCGTCGCTTAGTTAGA+GGG 0.553232 8_1:-87457691 None:intergenic
TCCTCAATATCCTTGCTCCT+GGG 0.553261 8_1:-87458641 None:intergenic
CAAAGTCCATATAGTCCATA+CGG 0.554961 8_1:-87458694 None:intergenic
AAACCATATATTGCTTCGAT+GGG 0.560652 8_1:+87459226 Msa1223050:CDS
AAATGGTTCAAACAAATGAT+GGG 0.563185 8_1:-87461294 None:intergenic
TGGGGATCACCTCTACCGTA+TGG 0.564627 8_1:+87458679 Msa1223050:CDS
GTTGCACCAAGAGTGTTACT+AGG 0.567304 8_1:+87456715 Msa1223050:CDS
CATGTCTCTCACTGCTGACG+TGG 0.567792 8_1:+87456749 Msa1223050:CDS
CATGTAAAATTCTTTAGCTG+AGG 0.568397 8_1:-87459487 None:intergenic
GCAACCTACCTGTCATCCAT+TGG 0.568958 8_1:-87458868 None:intergenic
AATCAATGTCCTACACATGA+AGG 0.570702 8_1:-87456461 None:intergenic
TCGTAAAAGCTAAACTTGGA+TGG 0.571340 8_1:-87460192 None:intergenic
AACTACACTATGCTCTATGA+AGG 0.573836 8_1:-87460443 None:intergenic
CTTAGTTAGAGGGAAGAGAC+GGG 0.579833 8_1:-87457681 None:intergenic
AACGATTACTGGGAGGACAT+AGG 0.581490 8_1:+87459928 Msa1223050:CDS
TGCAAATGACTTTGGATCAG+AGG 0.582266 8_1:+87459455 Msa1223050:CDS
TGATAGCATTATCTGACCAC+TGG 0.582297 8_1:-87456577 None:intergenic
TGCCTCAAAGAATGATCTGA+TGG 0.583837 8_1:-87459953 None:intergenic
CAAAACCTATGTACACATCA+AGG 0.586204 8_1:+87460220 Msa1223050:CDS
TTACAAACGCCACGAAGTAG+AGG 0.586616 8_1:-87456326 None:intergenic
ATTGCACGTGCTTACAACTC+CGG 0.586744 8_1:+87458206 Msa1223050:CDS
ACTCAAACTCCAGGGGAACA+AGG 0.586901 8_1:+87458417 Msa1223050:CDS
ATACAACAGTGACGCCGGAA+CGG 0.588438 8_1:-87461225 None:intergenic
TGACGTGGCTAGCGAATCCA+AGG 0.589531 8_1:+87456764 Msa1223050:CDS
AGTGGCAGCACAGTTAGCTG+AGG 0.590518 8_1:+87460792 Msa1223050:CDS
ACAAACGCCACGAAGTAGAG+GGG 0.592655 8_1:-87456324 None:intergenic
TGAAGATTGACAACAAAGGA+AGG 0.594911 8_1:+87459018 Msa1223050:CDS
GGCGTTTGTAACAAAACTGG+TGG 0.597919 8_1:+87456338 Msa1223050:five_prime_UTR
TTTCGGAGATGGCTATGTTG+AGG 0.601300 8_1:+87458241 Msa1223050:CDS
TCCTGGCTCACGTAGCTGAA+CGG 0.602124 8_1:-87456604 None:intergenic
TGAGTAACTGCATCAATAGT+GGG 0.602456 8_1:+87458129 Msa1223050:CDS
TTTCAATACAACAGTGACGC+CGG 0.605108 8_1:-87461230 None:intergenic
TTGCTGCAACTCAAACTCCA+GGG 0.607945 8_1:+87458409 Msa1223050:CDS
GTGGCAGTTATACTTGGTGG+AGG 0.608267 8_1:+87457650 Msa1223050:CDS
TCAGCTACGTGAGCCAGGAA+TGG 0.608992 8_1:+87456608 Msa1223050:CDS
GTTGATTCAATTATATCACA+TGG 0.609797 8_1:+87460403 Msa1223050:CDS
GCTTAGTTAGAGGGAAGAGA+CGG 0.611428 8_1:-87457682 None:intergenic
GAGGCTGATAGATCATCAGA+AGG 0.613138 8_1:+87461193 Msa1223050:CDS
ACTACACAACCTTCATGTGT+AGG 0.614291 8_1:+87456452 Msa1223050:five_prime_UTR
GAAGTAGGATCCCAGGAGCA+AGG 0.614406 8_1:+87458631 Msa1223050:intron
TTAACTGCAGGGAGTACAAG+AGG 0.616616 8_1:+87461174 Msa1223050:intron
TACAAACGCCACGAAGTAGA+GGG 0.619232 8_1:-87456325 None:intergenic
AGGAGCAGAGCTCAAAGCAA+TGG 0.621977 8_1:+87459067 Msa1223050:CDS
TGAATTGCAATCTCTCTGCA+CGG 0.623735 8_1:+87461514 Msa1223050:three_prime_UTR
GTGGCAGCACAGTTAGCTGA+GGG 0.623997 8_1:+87460793 Msa1223050:CDS
TGCAATATGTCTGTTGAGTG+AGG 0.624023 8_1:-87458189 None:intergenic
GGGAGTGTATGTCTTCAAGA+AGG 0.627250 8_1:+87459246 Msa1223050:CDS
GATACTCACATGCTCAGTGA+GGG 0.627354 8_1:-87459983 None:intergenic
CTATTGTCAATCTTCGATGG+TGG 0.633694 8_1:-87460252 None:intergenic
ATCCAGGATCATCGAGAGAG+CGG 0.634167 8_1:+87458820 Msa1223050:intron
CTTCATCAGACCGAAATCTG+AGG 0.635986 8_1:-87459000 None:intergenic
ATCGAAGATTGACAATAGCA+AGG 0.647211 8_1:+87460257 Msa1223050:CDS
AAGGGATCCAAGTACAGTCG+TGG 0.648334 8_1:+87457631 Msa1223050:CDS
TAGGACATTGATTTCAAACA+CGG 0.648351 8_1:+87456471 Msa1223050:five_prime_UTR
TGCTGCAACTCAAACTCCAG+GGG 0.653704 8_1:+87458410 Msa1223050:CDS
AAAGCTCGTCCTCAAATCCG+TGG 0.659004 8_1:-87461319 None:intergenic
CACGTCAGCAGTGAGAGACA+TGG 0.659597 8_1:-87456748 None:intergenic
ACAATTGTATTTGGATAACG+TGG 0.668904 8_1:+87456363 Msa1223050:five_prime_UTR
AGCTGATTACTATGAAACTG+AGG 0.673409 8_1:+87460765 Msa1223050:CDS
AGGCTGATAGATCATCAGAA+GGG 0.673829 8_1:+87461194 Msa1223050:CDS
TCAGACCGAAATCTGAGGCG+CGG 0.680822 8_1:-87458995 None:intergenic
TGATACTCACATGCTCAGTG+AGG 0.683087 8_1:-87459984 None:intergenic
AAAATGGCAGTCTCTGCCAG+TGG 0.689914 8_1:+87456561 Msa1223050:exon
CTGATGAAGATTGACAACAA+AGG 0.698426 8_1:+87459014 Msa1223050:CDS
CAAACGCCACGAAGTAGAGG+GGG 0.704127 8_1:-87456323 None:intergenic
TCTCTTCAACGATTACTGGG+AGG 0.713335 8_1:+87459921 Msa1223050:CDS
AAACACGGACAAGAAGACAA+AGG 0.716788 8_1:+87456486 Msa1223050:five_prime_UTR
TGTTGTCATAGCAAACTCAG+AGG 0.724048 8_1:+87460975 Msa1223050:CDS
AAGGTACTGCTGATGCTGTG+CGG 0.750182 8_1:+87458454 Msa1223050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAATAAAAACACAA+TGG + chr8_1:87461368-87461387 Msa1223050:three_prime_UTR 10.0%
!! GAATTTAAATAACAATTCAT+TGG - chr8_1:87457036-87457055 None:intergenic 15.0%
!!! ACCAATTAATTTAATTTAGA+TGG + chr8_1:87459421-87459440 Msa1223050:intron 15.0%
!! TAAATTCCTAAAATGATTTA+AGG + chr8_1:87459732-87459751 Msa1223050:intron 15.0%
!! ATATTTAAATCTCAAAATCA+TGG - chr8_1:87460136-87460155 None:intergenic 15.0%
!!! AGAAATCTTATGTTTTTCTT+TGG - chr8_1:87457011-87457030 None:intergenic 20.0%
!!! TTTGATTCTCTACTTTTATT+TGG + chr8_1:87457064-87457083 Msa1223050:intron 20.0%
!! ATGGATTTACAATTATATAG+TGG + chr8_1:87457101-87457120 Msa1223050:intron 20.0%
!! TAAACAAAACTCTTAATCAA+TGG - chr8_1:87457351-87457370 None:intergenic 20.0%
!! TATATTACTGCATTGAATTT+AGG - chr8_1:87457498-87457517 None:intergenic 20.0%
!! TAAATTCAATGCAGTAATAT+AGG + chr8_1:87457497-87457516 Msa1223050:intron 20.0%
!! AAATTCAATGCAGTAATATA+GGG + chr8_1:87457498-87457517 Msa1223050:intron 20.0%
!! AGATACTTCTTAATCTATTA+AGG + chr8_1:87459269-87459288 Msa1223050:CDS 20.0%
!! TAATGTTGTATCAAAATGTT+AGG + chr8_1:87459298-87459317 Msa1223050:intron 20.0%
!! GCCATCTAAATTAAATTAAT+TGG - chr8_1:87459425-87459444 None:intergenic 20.0%
!!! TTTTCACCTTAAATCATTTT+AGG - chr8_1:87459741-87459760 None:intergenic 20.0%
!! TGAAGTTTAATTCATTTCTT+AGG - chr8_1:87460034-87460053 None:intergenic 20.0%
!! AAACTCAAATGTTCATTTAA+AGG + chr8_1:87460483-87460502 Msa1223050:CDS 20.0%
!!! ATCTTTTGAAAATAGTAGAT+TGG - chr8_1:87460519-87460538 None:intergenic 20.0%
!! TAAACATACCAAAATACATA+TGG - chr8_1:87460678-87460697 None:intergenic 20.0%
!! AAAAATTCAACAATTGAAGA+CGG + chr8_1:87461250-87461269 Msa1223050:CDS 20.0%
!!! CCTTATCATTTTTTTTGACT+TGG - chr8_1:87456281-87456300 None:intergenic 25.0%
! CCAAGTCAAAAAAAATGATA+AGG + chr8_1:87456278-87456297 Msa1223050:five_prime_UTR 25.0%
!!! GGAATTTGATTTGTTAATGA+AGG - chr8_1:87456513-87456532 None:intergenic 25.0%
!!! TTTTGTAATGGAGAAATGAT+GGG + chr8_1:87456660-87456679 Msa1223050:CDS 25.0%
! TACCATGACTATATATGTAT+AGG + chr8_1:87457127-87457146 Msa1223050:intron 25.0%
! TACCTATACATATATAGTCA+TGG - chr8_1:87457132-87457151 None:intergenic 25.0%
!! ACTTTTTGTTAGATTAAAGC+TGG + chr8_1:87457178-87457197 Msa1223050:intron 25.0%
!! TTACTACACGTAAATTTTGA+AGG + chr8_1:87457385-87457404 Msa1223050:intron 25.0%
! AAATGTTTCCATATGATGAA+TGG + chr8_1:87457567-87457586 Msa1223050:intron 25.0%
! AATGTTTCCATATGATGAAT+GGG + chr8_1:87457568-87457587 Msa1223050:intron 25.0%
! TTATGATGAATGGAACAATT+AGG - chr8_1:87457759-87457778 None:intergenic 25.0%
! AAGGAAATGAAAAACGTAAA+TGG + chr8_1:87457969-87457988 Msa1223050:intron 25.0%
!!! ATTAAGTTGGTTATCTTCTT+TGG + chr8_1:87458051-87458070 Msa1223050:intron 25.0%
!!! TTAAGTTGGTTATCTTCTTT+GGG + chr8_1:87458052-87458071 Msa1223050:intron 25.0%
! ATAATTTACAAATCAACGTG+CGG - chr8_1:87458354-87458373 None:intergenic 25.0%
!! AAGCTACAACATATATTTTG+TGG - chr8_1:87458531-87458550 None:intergenic 25.0%
!! AAATATGCTTTTCATGAAGT+AGG + chr8_1:87458616-87458635 Msa1223050:intron 25.0%
!!! AAATGTTAGGTTTTTTCTTG+TGG + chr8_1:87459311-87459330 Msa1223050:intron 25.0%
!! AGCTAAAGAATTTTACATGA+AGG + chr8_1:87459491-87459510 Msa1223050:CDS 25.0%
!! TTAAGACTTTTGTCTAAGTT+AGG - chr8_1:87459678-87459697 None:intergenic 25.0%
! TAAAAACTTATAGCTGCTTA+TGG + chr8_1:87459695-87459714 Msa1223050:intron 25.0%
! ATGTTCACTTTCACTTATTA+TGG + chr8_1:87459865-87459884 Msa1223050:intron 25.0%
! TCAATTTCAGTTGTAATTGA+TGG + chr8_1:87460004-87460023 Msa1223050:intron 25.0%
! AAAGGTCACATAATATATTG+AGG - chr8_1:87460371-87460390 None:intergenic 25.0%
!! GTTGATTCAATTATATCACA+TGG + chr8_1:87460403-87460422 Msa1223050:CDS 25.0%
! CAAATGTTCATTTAAAGGTT+TGG + chr8_1:87460488-87460507 Msa1223050:intron 25.0%
! GTAAATCAGGTAAGTATATA+TGG - chr8_1:87460568-87460587 None:intergenic 25.0%
!! AATATTCCTAAAGTTTTTGC+TGG + chr8_1:87460620-87460639 Msa1223050:intron 25.0%
! ATTGTATTACACTTCTATAC+AGG + chr8_1:87460726-87460745 Msa1223050:intron 25.0%
! ATTGACAAAAATGCTAGAAT+TGG + chr8_1:87460946-87460965 Msa1223050:CDS 25.0%
! AAAATTCAACAATTGAAGAC+GGG + chr8_1:87461251-87461270 Msa1223050:CDS 25.0%
! AAATGGTTCAAACAAATGAT+GGG - chr8_1:87461297-87461316 None:intergenic 25.0%
! AAAATGGTTCAAACAAATGA+TGG - chr8_1:87461298-87461317 None:intergenic 25.0%
! CACAATGGATATAAATAGAT+TGG + chr8_1:87461383-87461402 Msa1223050:three_prime_UTR 25.0%
ACAATTGTATTTGGATAACG+TGG + chr8_1:87456363-87456382 Msa1223050:five_prime_UTR 30.0%
!! TAGGACATTGATTTCAAACA+CGG + chr8_1:87456471-87456490 Msa1223050:five_prime_UTR 30.0%
!! AAGGTTGTGAAGTTTTGTAA+TGG + chr8_1:87456648-87456667 Msa1223050:CDS 30.0%
!! GTTTTGTAATGGAGAAATGA+TGG + chr8_1:87456659-87456678 Msa1223050:CDS 30.0%
! ATTTTTCCTAGTAACACTCT+TGG - chr8_1:87456724-87456743 None:intergenic 30.0%
CAAGAAAGAGTTAATTGCAT+TGG - chr8_1:87456823-87456842 None:intergenic 30.0%
GCAATTAACTCTTTCTTGTT+TGG + chr8_1:87456825-87456844 Msa1223050:intron 30.0%
TAGAAACGTTGTGAAATTCT+TGG + chr8_1:87456937-87456956 Msa1223050:intron 30.0%
!!! TTTGGCTTGTATTTTGACTA+TGG + chr8_1:87457082-87457101 Msa1223050:intron 30.0%
TTGTGACCTATATACTTCAA+TGG + chr8_1:87457209-87457228 Msa1223050:intron 30.0%
CAAAGAAAATCTTAATGGAG+GGG - chr8_1:87457263-87457282 None:intergenic 30.0%
GCAAAGAAAATCTTAATGGA+GGG - chr8_1:87457264-87457283 None:intergenic 30.0%
AGCAAAGAAAATCTTAATGG+AGG - chr8_1:87457265-87457284 None:intergenic 30.0%
TGCACAAAGTATAAAGTTGT+TGG - chr8_1:87457326-87457345 None:intergenic 30.0%
ATTACTGCATTGAATTTAGG+TGG - chr8_1:87457495-87457514 None:intergenic 30.0%
CATATGATGAATGGGAATAT+GGG + chr8_1:87457576-87457595 Msa1223050:intron 30.0%
AAAATGCAGATGTGGAAAAA+AGG + chr8_1:87457612-87457631 Msa1223050:CDS 30.0%
AAATGCAGATGTGGAAAAAA+GGG + chr8_1:87457613-87457632 Msa1223050:CDS 30.0%
AGAAAAGAAAAACTTACAGC+AGG - chr8_1:87457719-87457738 None:intergenic 30.0%
GAATGGAACAATTAGGAAAA+TGG - chr8_1:87457752-87457771 None:intergenic 30.0%
GTTTGTGTTAGTGTTTCATA+GGG - chr8_1:87457806-87457825 None:intergenic 30.0%
TGTTTGTGTTAGTGTTTCAT+AGG - chr8_1:87457807-87457826 None:intergenic 30.0%
TTGAATGTAACAATAAGTGC+CGG + chr8_1:87457876-87457895 Msa1223050:intron 30.0%
ATATGTAGCTGCTTACATTA+TGG - chr8_1:87458033-87458052 None:intergenic 30.0%
TAAGCAGCTACATATTAAGT+TGG + chr8_1:87458038-87458057 Msa1223050:intron 30.0%
!! TAAGTTGGTTATCTTCTTTG+GGG + chr8_1:87458053-87458072 Msa1223050:intron 30.0%
TTCCTAAATTAGGTTCCAAT+TGG + chr8_1:87458077-87458096 Msa1223050:intron 30.0%
! GTGGTTTTCTTAATTGCTTT+AGG - chr8_1:87458512-87458531 None:intergenic 30.0%
!! TGTAGCTTTTTCTTTAATGC+AGG + chr8_1:87458543-87458562 Msa1223050:intron 30.0%
! GGTTATGCTGTTTAATACTA+TGG + chr8_1:87458564-87458583 Msa1223050:intron 30.0%
CATCACACTTAATTGCTTAT+TGG - chr8_1:87458591-87458610 None:intergenic 30.0%
!!! AGGATGTTTTGATTCTTTCT+GGG + chr8_1:87458660-87458679 Msa1223050:CDS 30.0%
ATATGGACTTTGTTAGAGTA+AGG + chr8_1:87458705-87458724 Msa1223050:intron 30.0%
TTGACTTAAACTTCTTATCC+AGG + chr8_1:87458804-87458823 Msa1223050:intron 30.0%
TGACATGAATCTTACTACTT+GGG - chr8_1:87458898-87458917 None:intergenic 30.0%
ATGACATGAATCTTACTACT+TGG - chr8_1:87458899-87458918 None:intergenic 30.0%
! TAGGCTTTTCACTAAATGAA+AGG - chr8_1:87459046-87459065 None:intergenic 30.0%
TCATTTAGTGAAAAGCCTAA+AGG + chr8_1:87459047-87459066 Msa1223050:CDS 30.0%
AAAACCATATATTGCTTCGA+TGG + chr8_1:87459225-87459244 Msa1223050:CDS 30.0%
AAACCATATATTGCTTCGAT+GGG + chr8_1:87459226-87459245 Msa1223050:CDS 30.0%
CATGTAAAATTCTTTAGCTG+AGG - chr8_1:87459490-87459509 None:intergenic 30.0%
CTGAACTTGTAATTGCTTAT+TGG + chr8_1:87459810-87459829 Msa1223050:intron 30.0%
TATAGCAAAAGTTTGAATGC+AGG + chr8_1:87459894-87459913 Msa1223050:intron 30.0%
TTATCTCTTCAACGATTACT+GGG + chr8_1:87459918-87459937 Msa1223050:CDS 30.0%
AAAGTTGTAATCACATGGTA+TGG - chr8_1:87460330-87460349 None:intergenic 30.0%
TATTGAGGTTGAACATTTGA+TGG - chr8_1:87460356-87460375 None:intergenic 30.0%
TACCTGATTTACTAGTTATG+TGG + chr8_1:87460576-87460595 Msa1223050:intron 30.0%
! GTAGTAGACCATATGTATTT+TGG + chr8_1:87460667-87460686 Msa1223050:intron 30.0%
AGAAAACACCAAAATCAAGT+AGG + chr8_1:87460837-87460856 Msa1223050:intron 30.0%
! TACCATGATAGTGAAAGTTT+CGG - chr8_1:87460865-87460884 None:intergenic 30.0%
AGTAAGCTAAAGCAACTTAA+GGG - chr8_1:87461044-87461063 None:intergenic 30.0%
TGCTAATTGAATTAACTGCA+GGG + chr8_1:87461163-87461182 Msa1223050:intron 30.0%
! TTGTTTGAACCATTTTACCA+CGG + chr8_1:87461302-87461321 Msa1223050:three_prime_UTR 30.0%
ATGCTAAGATAGACAGAATT+GGG - chr8_1:87461428-87461447 None:intergenic 30.0%
! CTGGTGGATACAATTGTATT+TGG + chr8_1:87456354-87456373 Msa1223050:five_prime_UTR 35.0%
TCACTACGCATTTGAAGATT+GGG - chr8_1:87456389-87456408 None:intergenic 35.0%
ATCACTACGCATTTGAAGAT+TGG - chr8_1:87456390-87456409 None:intergenic 35.0%
AATCAATGTCCTACACATGA+AGG - chr8_1:87456464-87456483 None:intergenic 35.0%
AAGTTCACTCAGATAAACCT+TGG - chr8_1:87456784-87456803 None:intergenic 35.0%
TGACCTATATACTTCAATGG+TGG + chr8_1:87457212-87457231 Msa1223050:intron 35.0%
GACCTATATACTTCAATGGT+GGG + chr8_1:87457213-87457232 Msa1223050:intron 35.0%
AACCCACCATTGAAGTATAT+AGG - chr8_1:87457218-87457237 None:intergenic 35.0%
GGGAGCAAAGAAAATCTTAA+TGG - chr8_1:87457268-87457287 None:intergenic 35.0%
CCATATTCCCATTCATCATA+TGG - chr8_1:87457578-87457597 None:intergenic 35.0%
CCATATGATGAATGGGAATA+TGG + chr8_1:87457575-87457594 Msa1223050:intron 35.0%
TCCATTCATCATAAGCATAG+TGG + chr8_1:87457765-87457784 Msa1223050:intron 35.0%
ACCACTATGCTTATGATGAA+TGG - chr8_1:87457769-87457788 None:intergenic 35.0%
CATAGTGGTTGCTTATAGTT+TGG + chr8_1:87457780-87457799 Msa1223050:intron 35.0%
TAGTGTTTGGTTAGTAACAC+CGG - chr8_1:87457898-87457917 None:intergenic 35.0%
GTATCAGTGCTACATAAGTT+TGG + chr8_1:87457936-87457955 Msa1223050:intron 35.0%
! CGTTTTTCATTTCCTTGACA+GGG - chr8_1:87457965-87457984 None:intergenic 35.0%
! ACGTTTTTCATTTCCTTGAC+AGG - chr8_1:87457966-87457985 None:intergenic 35.0%
!! TCTTTGGGGTTTCCTAAATT+AGG + chr8_1:87458067-87458086 Msa1223050:intron 35.0%
CTCCAATTGGAACCTAATTT+AGG - chr8_1:87458082-87458101 None:intergenic 35.0%
CTAAATTAGGTTCCAATTGG+AGG + chr8_1:87458080-87458099 Msa1223050:intron 35.0%
CTATTGATGCAGTTACTCAT+TGG - chr8_1:87458128-87458147 None:intergenic 35.0%
ATGAGTAACTGCATCAATAG+TGG + chr8_1:87458128-87458147 Msa1223050:CDS 35.0%
TGAGTAACTGCATCAATAGT+GGG + chr8_1:87458129-87458148 Msa1223050:CDS 35.0%
CAAGGTAAAAAGTGGTTTCA+AGG + chr8_1:87458435-87458454 Msa1223050:CDS 35.0%
!!! GAGGATGTTTTGATTCTTTC+TGG + chr8_1:87458659-87458678 Msa1223050:CDS 35.0%
!!! GGATGTTTTGATTCTTTCTG+GGG + chr8_1:87458661-87458680 Msa1223050:CDS 35.0%
CAAAGTCCATATAGTCCATA+CGG - chr8_1:87458697-87458716 None:intergenic 35.0%
ACATGAATCTTACTACTTGG+GGG - chr8_1:87458896-87458915 None:intergenic 35.0%
GACATGAATCTTACTACTTG+GGG - chr8_1:87458897-87458916 None:intergenic 35.0%
CTGATGAAGATTGACAACAA+AGG + chr8_1:87459014-87459033 Msa1223050:CDS 35.0%
TGAAGATTGACAACAAAGGA+AGG + chr8_1:87459018-87459037 Msa1223050:CDS 35.0%
TTTCCAACTGCAAATGACTT+TGG + chr8_1:87459447-87459466 Msa1223050:CDS 35.0%
TAAAATTCTTTAGCTGAGGC+AGG - chr8_1:87459486-87459505 None:intergenic 35.0%
! GAAGGTATGACTGATAAAGA+AGG + chr8_1:87459509-87459528 Msa1223050:intron 35.0%
CTGATAAAGAAGGTTTACTG+TGG + chr8_1:87459519-87459538 Msa1223050:intron 35.0%
ATCATTCTCTGTCATTGCAA+TGG + chr8_1:87459584-87459603 Msa1223050:intron 35.0%
AGTGAAAGTGAACATTCTAC+TGG - chr8_1:87459860-87459879 None:intergenic 35.0%
CTTATCTCTTCAACGATTAC+TGG + chr8_1:87459917-87459936 Msa1223050:CDS 35.0%
TACCATCAGATCATTCTTTG+AGG + chr8_1:87459951-87459970 Msa1223050:CDS 35.0%
TCGTAAAAGCTAAACTTGGA+TGG - chr8_1:87460195-87460214 None:intergenic 35.0%
TGCATCGTAAAAGCTAAACT+TGG - chr8_1:87460199-87460218 None:intergenic 35.0%
CAAAACCTATGTACACATCA+AGG + chr8_1:87460220-87460239 Msa1223050:CDS 35.0%
TTTCTCCTTGATGTGTACAT+AGG - chr8_1:87460228-87460247 None:intergenic 35.0%
! TTGCTATTGTCAATCTTCGA+TGG - chr8_1:87460258-87460277 None:intergenic 35.0%
ATCGAAGATTGACAATAGCA+AGG + chr8_1:87460257-87460276 Msa1223050:CDS 35.0%
AACTACACTATGCTCTATGA+AGG - chr8_1:87460446-87460465 None:intergenic 35.0%
TTCATAGAGCATAGTGTAGT+TGG + chr8_1:87460445-87460464 Msa1223050:CDS 35.0%
TGCCACATAACTAGTAAATC+AGG - chr8_1:87460581-87460600 None:intergenic 35.0%
TGTGGCAAGTCTCAATTTAT+AGG + chr8_1:87460594-87460613 Msa1223050:intron 35.0%
! ATTCCTAAAGTTTTTGCTGG+TGG + chr8_1:87460623-87460642 Msa1223050:intron 35.0%
TTTCCACCAGCAAAAACTTT+AGG - chr8_1:87460629-87460648 None:intergenic 35.0%
AACTAAATGAGTGCACAAGT+AGG - chr8_1:87460704-87460723 None:intergenic 35.0%
AGCTGATTACTATGAAACTG+AGG + chr8_1:87460765-87460784 Msa1223050:CDS 35.0%
! GTGTTTTCTCCTATTCCTAT+TGG - chr8_1:87460826-87460845 None:intergenic 35.0%
! TTTCGGTTCCTACTTGATTT+TGG - chr8_1:87460848-87460867 None:intergenic 35.0%
AACCGAAACTTTCACTATCA+TGG + chr8_1:87460860-87460879 Msa1223050:intron 35.0%
GAGTAAGCTAAAGCAACTTA+AGG - chr8_1:87461045-87461064 None:intergenic 35.0%
GTGCTAATTGAATTAACTGC+AGG + chr8_1:87461162-87461181 Msa1223050:intron 35.0%
GACAGAATTGGGATATAAGA+TGG - chr8_1:87461417-87461436 None:intergenic 35.0%
GATGCTAAGATAGACAGAAT+TGG - chr8_1:87461429-87461448 None:intergenic 35.0%
ACTACACAACCTTCATGTGT+AGG + chr8_1:87456452-87456471 Msa1223050:five_prime_UTR 40.0%
AAACACGGACAAGAAGACAA+AGG + chr8_1:87456486-87456505 Msa1223050:five_prime_UTR 40.0%
TGATAGCATTATCTGACCAC+TGG - chr8_1:87456580-87456599 None:intergenic 40.0%
! CACAACCTTCAAGTTTCTAC+TGG - chr8_1:87456637-87456656 None:intergenic 40.0%
!! TACTTCAATGGTGGGTTACT+TGG + chr8_1:87457221-87457240 Msa1223050:intron 40.0%
!! ACTTCAATGGTGGGTTACTT+GGG + chr8_1:87457222-87457241 Msa1223050:intron 40.0%
ATTCCCATGCACACTGAAAT+GGG - chr8_1:87457288-87457307 None:intergenic 40.0%
TGCATTGAATTTAGGTGGCT+TGG - chr8_1:87457490-87457509 None:intergenic 40.0%
GCAGTTGAAAAATGCAGATG+TGG + chr8_1:87457604-87457623 Msa1223050:intron 40.0%
TGACGCTAACACGTAGATAT+TGG + chr8_1:87457833-87457852 Msa1223050:intron 40.0%
! ATTGAAAGCGTGCTAGTGTT+TGG - chr8_1:87457911-87457930 None:intergenic 40.0%
!! TTCCAATTGGAGGTGCTTAT+AGG + chr8_1:87458090-87458109 Msa1223050:CDS 40.0%
TGCAATATGTCTGTTGAGTG+AGG - chr8_1:87458192-87458211 None:intergenic 40.0%
! ACACACACATAAGCTGACTT+AGG - chr8_1:87458312-87458331 None:intergenic 40.0%
AAGTGTGCTTGTTCTGTTTC+AGG + chr8_1:87458383-87458402 Msa1223050:intron 40.0%
! TTTTCATGAAGTAGGATCCC+AGG + chr8_1:87458624-87458643 Msa1223050:intron 40.0%
CTGCTTCATGATTTAGCAAG+TGG + chr8_1:87459162-87459181 Msa1223050:intron 40.0%
ACTCCCATCGAAGCAATATA+TGG - chr8_1:87459232-87459251 None:intergenic 40.0%
GATCCAAAGTCATTTGCAGT+TGG - chr8_1:87459453-87459472 None:intergenic 40.0%
TGCAAATGACTTTGGATCAG+AGG + chr8_1:87459455-87459474 Msa1223050:CDS 40.0%
GATGCATACTGTCACAACAT+AGG - chr8_1:87459567-87459586 None:intergenic 40.0%
GAACATTCTACTGGATGCAA+AGG - chr8_1:87459851-87459870 None:intergenic 40.0%
TGCCTCAAAGAATGATCTGA+TGG - chr8_1:87459956-87459975 None:intergenic 40.0%
CTATTGTCAATCTTCGATGG+TGG - chr8_1:87460255-87460274 None:intergenic 40.0%
ATGGAGAGTAGGGATACAAA+GGG - chr8_1:87460311-87460330 None:intergenic 40.0%
TATGGAGAGTAGGGATACAA+AGG - chr8_1:87460312-87460331 None:intergenic 40.0%
ATCACATGGTATGGAGAGTA+GGG - chr8_1:87460321-87460340 None:intergenic 40.0%
AATCACATGGTATGGAGAGT+AGG - chr8_1:87460322-87460341 None:intergenic 40.0%
GGCAGAAAGTTGTAATCACA+TGG - chr8_1:87460335-87460354 None:intergenic 40.0%
ATCAACGAGCTGCATAAGAA+AGG - chr8_1:87460389-87460408 None:intergenic 40.0%
GGAAGAGTTCCAATAGGAAT+AGG + chr8_1:87460814-87460833 Msa1223050:CDS 40.0%
TGTTGTCATAGCAAACTCAG+AGG + chr8_1:87460975-87460994 Msa1223050:CDS 40.0%
AAGCTAAAGCAACTTAAGGG+TGG - chr8_1:87461041-87461060 None:intergenic 40.0%
AGGCTGATAGATCATCAGAA+GGG + chr8_1:87461194-87461213 Msa1223050:CDS 40.0%
TTTCAATACAACAGTGACGC+CGG - chr8_1:87461233-87461252 None:intergenic 40.0%
! ACCATTTTACCACGGATTTG+AGG + chr8_1:87461310-87461329 Msa1223050:three_prime_UTR 40.0%
TCCTCAAATCCGTGGTAAAA+TGG - chr8_1:87461314-87461333 None:intergenic 40.0%
TGAATTGCAATCTCTCTGCA+CGG + chr8_1:87461514-87461533 Msa1223050:three_prime_UTR 40.0%
TACAAACGCCACGAAGTAGA+GGG - chr8_1:87456328-87456347 None:intergenic 45.0%
TTACAAACGCCACGAAGTAG+AGG - chr8_1:87456329-87456348 None:intergenic 45.0%
CGTGGCGTTTGTAACAAAAC+TGG + chr8_1:87456335-87456354 Msa1223050:five_prime_UTR 45.0%
GGCGTTTGTAACAAAACTGG+TGG + chr8_1:87456338-87456357 Msa1223050:five_prime_UTR 45.0%
!!! CTGCCATTTTTTCCGATCAC+CGG - chr8_1:87456551-87456570 None:intergenic 45.0%
TTTCTACTGGTCACCATTCC+TGG - chr8_1:87456624-87456643 None:intergenic 45.0%
GGTGACCAGTAGAAACTTGA+AGG + chr8_1:87456629-87456648 Msa1223050:CDS 45.0%
! AACACTCTTGGTGCAACCAT+TGG - chr8_1:87456712-87456731 None:intergenic 45.0%
!! GTTGCACCAAGAGTGTTACT+AGG + chr8_1:87456715-87456734 Msa1223050:CDS 45.0%
TACTTGGGTCCACTGTATCA+AGG + chr8_1:87457237-87457256 Msa1223050:intron 45.0%
CATTCCCATGCACACTGAAA+TGG - chr8_1:87457289-87457308 None:intergenic 45.0%
CATTTCAGTGTGCATGGGAA+TGG + chr8_1:87457287-87457306 Msa1223050:intron 45.0%
ATAACTGCCACGACTGTACT+TGG - chr8_1:87457641-87457660 None:intergenic 45.0%
ACAGTCGTGGCAGTTATACT+TGG + chr8_1:87457644-87457663 Msa1223050:CDS 45.0%
CTTAGTTAGAGGGAAGAGAC+GGG - chr8_1:87457684-87457703 None:intergenic 45.0%
GCTTAGTTAGAGGGAAGAGA+CGG - chr8_1:87457685-87457704 None:intergenic 45.0%
TTGCTCGTCGCTTAGTTAGA+GGG - chr8_1:87457694-87457713 None:intergenic 45.0%
TTTGCTCGTCGCTTAGTTAG+AGG - chr8_1:87457695-87457714 None:intergenic 45.0%
TAAGTTTGGTCACCCTGTCA+AGG + chr8_1:87457950-87457969 Msa1223050:intron 45.0%
AGCCTATAAGCACCTCCAAT+TGG - chr8_1:87458095-87458114 None:intergenic 45.0%
ATTGCACGTGCTTACAACTC+CGG + chr8_1:87458206-87458225 Msa1223050:CDS 45.0%
TTTCGGAGATGGCTATGTTG+AGG + chr8_1:87458241-87458260 Msa1223050:CDS 45.0%
TTGCTGCAACTCAAACTCCA+GGG + chr8_1:87458409-87458428 Msa1223050:CDS 45.0%
!! CACTTTTTACCTTGTTCCCC+TGG - chr8_1:87458429-87458448 None:intergenic 45.0%
CAGGGGAACAAGGTAAAAAG+TGG + chr8_1:87458427-87458446 Msa1223050:CDS 45.0%
TCCTCAATATCCTTGCTCCT+GGG - chr8_1:87458644-87458663 None:intergenic 45.0%
ATCCTCAATATCCTTGCTCC+TGG - chr8_1:87458645-87458664 None:intergenic 45.0%
CCATATAGTCCATACGGTAG+AGG - chr8_1:87458691-87458710 None:intergenic 45.0%
! CCTCTACCGTATGGACTATA+TGG + chr8_1:87458688-87458707 Msa1223050:CDS 45.0%
CACTCTTTCTTGTCTGCCAA+TGG + chr8_1:87458852-87458871 Msa1223050:CDS 45.0%
CTTCATCAGACCGAAATCTG+AGG - chr8_1:87459003-87459022 None:intergenic 45.0%
CAAGTGGATACAACCGTTCT+CGG + chr8_1:87459178-87459197 Msa1223050:CDS 45.0%
ATCCTTCGAAAGACCGAGAA+CGG - chr8_1:87459194-87459213 None:intergenic 45.0%
! GGGAGTGTATGTCTTCAAGA+AGG + chr8_1:87459246-87459265 Msa1223050:CDS 45.0%
GAGCAAACAAGCTTGGCAAT+AGG - chr8_1:87459395-87459414 None:intergenic 45.0%
! TAGCACTGAGCAAACAAGCT+TGG - chr8_1:87459402-87459421 None:intergenic 45.0%
TAGCTGCTTATGGAGATGCT+AGG + chr8_1:87459705-87459724 Msa1223050:intron 45.0%
TCTCTTCAACGATTACTGGG+AGG + chr8_1:87459921-87459940 Msa1223050:CDS 45.0%
AACGATTACTGGGAGGACAT+AGG + chr8_1:87459928-87459947 Msa1223050:CDS 45.0%
GATACTCACATGCTCAGTGA+GGG - chr8_1:87459986-87460005 None:intergenic 45.0%
TGATACTCACATGCTCAGTG+AGG - chr8_1:87459987-87460006 None:intergenic 45.0%
ATACAGGACACAGTGATGCT+TGG + chr8_1:87460742-87460761 Msa1223050:intron 45.0%
CTATGAAACTGAGGCAGAAG+TGG + chr8_1:87460774-87460793 Msa1223050:CDS 45.0%
! TTAACTGCAGGGAGTACAAG+AGG + chr8_1:87461174-87461193 Msa1223050:intron 45.0%
GAGGCTGATAGATCATCAGA+AGG + chr8_1:87461193-87461212 Msa1223050:CDS 45.0%
! GAAGGGTTTTACATCCGTTC+CGG + chr8_1:87461211-87461230 Msa1223050:CDS 45.0%
ATTACACCCCCTCTACTTCG+TGG + chr8_1:87456317-87456336 Msa1223050:five_prime_UTR 50.0%
ACAAACGCCACGAAGTAGAG+GGG - chr8_1:87456327-87456346 None:intergenic 50.0%
! TTCCCATTTTGTCCCTCCTC+CGG + chr8_1:87456529-87456548 Msa1223050:five_prime_UTR 50.0%
! TTTTTCCGATCACCGGAGGA+GGG - chr8_1:87456544-87456563 None:intergenic 50.0%
!!! TTTTTTCCGATCACCGGAGG+AGG - chr8_1:87456545-87456564 None:intergenic 50.0%
!!! CCATTTTTTCCGATCACCGG+AGG - chr8_1:87456548-87456567 None:intergenic 50.0%
CCTCCGGTGATCGGAAAAAA+TGG + chr8_1:87456545-87456564 Msa1223050:exon 50.0%
AAAATGGCAGTCTCTGCCAG+TGG + chr8_1:87456561-87456580 Msa1223050:exon 50.0%
GAGCTTCATGCTGCTACCAA+TGG + chr8_1:87456693-87456712 Msa1223050:CDS 50.0%
TGCTCCCATTTCAGTGTGCA+TGG + chr8_1:87457281-87457300 Msa1223050:intron 50.0%
GCTCCCATTTCAGTGTGCAT+GGG + chr8_1:87457282-87457301 Msa1223050:intron 50.0%
AAGGGATCCAAGTACAGTCG+TGG + chr8_1:87457631-87457650 Msa1223050:CDS 50.0%
GTCGTGGCAGTTATACTTGG+TGG + chr8_1:87457647-87457666 Msa1223050:CDS 50.0%
! GTGGCAGTTATACTTGGTGG+AGG + chr8_1:87457650-87457669 Msa1223050:CDS 50.0%
! GTTATACTTGGTGGAGGAGC+TGG + chr8_1:87457656-87457675 Msa1223050:CDS 50.0%
! TCCGGTACTGGAGTCACTTT+CGG + chr8_1:87458224-87458243 Msa1223050:CDS 50.0%
TCCGAAAGTGACTCCAGTAC+CGG - chr8_1:87458228-87458247 None:intergenic 50.0%
! ACTGGAGTCACTTTCGGAGA+TGG + chr8_1:87458230-87458249 Msa1223050:CDS 50.0%
CTTGCTGCAACTCAAACTCC+AGG + chr8_1:87458408-87458427 Msa1223050:CDS 50.0%
TGCTGCAACTCAAACTCCAG+GGG + chr8_1:87458410-87458429 Msa1223050:CDS 50.0%
ACTCAAACTCCAGGGGAACA+AGG + chr8_1:87458417-87458436 Msa1223050:CDS 50.0%
!! AAGGTACTGCTGATGCTGTG+CGG + chr8_1:87458454-87458473 Msa1223050:CDS 50.0%
!! GCAGTTTCACTGGCTCTTTG+AGG + chr8_1:87458476-87458495 Msa1223050:CDS 50.0%
TCCCAGGAGCAAGGATATTG+AGG + chr8_1:87458640-87458659 Msa1223050:CDS 50.0%
ATCCAGGATCATCGAGAGAG+CGG + chr8_1:87458820-87458839 Msa1223050:intron 50.0%
CTTGTCTGCCAATGGATGAC+AGG + chr8_1:87458860-87458879 Msa1223050:CDS 50.0%
TCTGCCAATGGATGACAGGT+AGG + chr8_1:87458864-87458883 Msa1223050:intron 50.0%
GCAACCTACCTGTCATCCAT+TGG - chr8_1:87458871-87458890 None:intergenic 50.0%
! AATCTGAGGCGCGGCTATAA+TGG - chr8_1:87458989-87459008 None:intergenic 50.0%
TATAGCCGCGCCTCAGATTT+CGG + chr8_1:87458990-87459009 Msa1223050:intron 50.0%
! GCTTTGAGCTCTGCTCCTTT+AGG - chr8_1:87459065-87459084 None:intergenic 50.0%
AGGAGCAGAGCTCAAAGCAA+TGG + chr8_1:87459067-87459086 Msa1223050:CDS 50.0%
AACCGTTCTCGGTCTTTCGA+AGG + chr8_1:87459189-87459208 Msa1223050:CDS 50.0%
GCTGAGGGAAGAGTTCCAAT+AGG + chr8_1:87460808-87460827 Msa1223050:CDS 50.0%
ATACAACAGTGACGCCGGAA+CGG - chr8_1:87461228-87461247 None:intergenic 50.0%
AAAGCTCGTCCTCAAATCCG+TGG - chr8_1:87461322-87461341 None:intergenic 50.0%
CAAACGCCACGAAGTAGAGG+GGG - chr8_1:87456326-87456345 None:intergenic 55.0%
CACCGGAGGAGGGACAAAAT+GGG - chr8_1:87456534-87456553 None:intergenic 55.0%
TCACCGGAGGAGGGACAAAA+TGG - chr8_1:87456535-87456554 None:intergenic 55.0%
TTTGTCCCTCCTCCGGTGAT+CGG + chr8_1:87456536-87456555 Msa1223050:five_prime_UTR 55.0%
TCCTGGCTCACGTAGCTGAA+CGG - chr8_1:87456607-87456626 None:intergenic 55.0%
TCAGCTACGTGAGCCAGGAA+TGG + chr8_1:87456608-87456627 Msa1223050:CDS 55.0%
CACGTCAGCAGTGAGAGACA+TGG - chr8_1:87456751-87456770 None:intergenic 55.0%
CATGTCTCTCACTGCTGACG+TGG + chr8_1:87456749-87456768 Msa1223050:CDS 55.0%
TGACGTGGCTAGCGAATCCA+AGG + chr8_1:87456764-87456783 Msa1223050:CDS 55.0%
ATGGAGGGGCCTTGATACAG+TGG - chr8_1:87457249-87457268 None:intergenic 55.0%
CGTGCTTACAACTCCGGTAC+TGG + chr8_1:87458212-87458231 Msa1223050:CDS 55.0%
ATGCTGTGCGGCAGTTTCAC+TGG + chr8_1:87458466-87458485 Msa1223050:CDS 55.0%
GAAGTAGGATCCCAGGAGCA+AGG + chr8_1:87458631-87458650 Msa1223050:intron 55.0%
TGGGGATCACCTCTACCGTA+TGG + chr8_1:87458679-87458698 Msa1223050:CDS 55.0%
! TCAGACCGAAATCTGAGGCG+CGG - chr8_1:87458998-87459017 None:intergenic 55.0%
AGTGGCAGCACAGTTAGCTG+AGG + chr8_1:87460792-87460811 Msa1223050:CDS 55.0%
GTGGCAGCACAGTTAGCTGA+GGG + chr8_1:87460793-87460812 Msa1223050:CDS 55.0%
ACCGTTCAGCTACGTGAGCC+AGG + chr8_1:87456603-87456622 Msa1223050:CDS 60.0%
CACCGCTCTCTCGATGATCC+TGG - chr8_1:87458825-87458844 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 87456271 87461571 87456271 ID=Msa1223050;Name=Msa1223050
chr8_1 mRNA 87456271 87461571 87456271 ID=Msa1223050-mRNA-1;Parent=Msa1223050;Name=Msa1223050-mRNA-1;_AED=0.08;_eAED=0.08;_QI=293|1|1|1|1|1|15|286|521
chr8_1 exon 87456271 87456785 87456271 ID=Msa1223050-mRNA-1:exon:31569;Parent=Msa1223050-mRNA-1
chr8_1 exon 87457608 87457721 87457608 ID=Msa1223050-mRNA-1:exon:31570;Parent=Msa1223050-mRNA-1
chr8_1 exon 87458089 87458262 87458089 ID=Msa1223050-mRNA-1:exon:31571;Parent=Msa1223050-mRNA-1
chr8_1 exon 87458405 87458497 87458405 ID=Msa1223050-mRNA-1:exon:31572;Parent=Msa1223050-mRNA-1
chr8_1 exon 87458638 87458721 87458638 ID=Msa1223050-mRNA-1:exon:31573;Parent=Msa1223050-mRNA-1
chr8_1 exon 87458826 87458881 87458826 ID=Msa1223050-mRNA-1:exon:31574;Parent=Msa1223050-mRNA-1
chr8_1 exon 87458995 87459088 87458995 ID=Msa1223050-mRNA-1:exon:31575;Parent=Msa1223050-mRNA-1
chr8_1 exon 87459178 87459290 87459178 ID=Msa1223050-mRNA-1:exon:31576;Parent=Msa1223050-mRNA-1
chr8_1 exon 87459440 87459512 87459440 ID=Msa1223050-mRNA-1:exon:31577;Parent=Msa1223050-mRNA-1
chr8_1 exon 87459916 87459996 87459916 ID=Msa1223050-mRNA-1:exon:31578;Parent=Msa1223050-mRNA-1
chr8_1 exon 87460192 87460278 87460192 ID=Msa1223050-mRNA-1:exon:31579;Parent=Msa1223050-mRNA-1
chr8_1 exon 87460400 87460504 87460400 ID=Msa1223050-mRNA-1:exon:31580;Parent=Msa1223050-mRNA-1
chr8_1 exon 87460748 87460854 87460748 ID=Msa1223050-mRNA-1:exon:31581;Parent=Msa1223050-mRNA-1
chr8_1 exon 87460936 87460996 87460936 ID=Msa1223050-mRNA-1:exon:31582;Parent=Msa1223050-mRNA-1
chr8_1 exon 87461184 87461571 87461184 ID=Msa1223050-mRNA-1:exon:31583;Parent=Msa1223050-mRNA-1
chr8_1 five_prime_UTR 87456271 87456563 87456271 ID=Msa1223050-mRNA-1:five_prime_utr;Parent=Msa1223050-mRNA-1
chr8_1 CDS 87456564 87456785 87456564 ID=Msa1223050-mRNA-1:cds;Parent=Msa1223050-mRNA-1
chr8_1 CDS 87457608 87457721 87457608 ID=Msa1223050-mRNA-1:cds;Parent=Msa1223050-mRNA-1
chr8_1 CDS 87458089 87458262 87458089 ID=Msa1223050-mRNA-1:cds;Parent=Msa1223050-mRNA-1
chr8_1 CDS 87458405 87458497 87458405 ID=Msa1223050-mRNA-1:cds;Parent=Msa1223050-mRNA-1
chr8_1 CDS 87458638 87458721 87458638 ID=Msa1223050-mRNA-1:cds;Parent=Msa1223050-mRNA-1
chr8_1 CDS 87458826 87458881 87458826 ID=Msa1223050-mRNA-1:cds;Parent=Msa1223050-mRNA-1
chr8_1 CDS 87458995 87459088 87458995 ID=Msa1223050-mRNA-1:cds;Parent=Msa1223050-mRNA-1
chr8_1 CDS 87459178 87459290 87459178 ID=Msa1223050-mRNA-1:cds;Parent=Msa1223050-mRNA-1
chr8_1 CDS 87459440 87459512 87459440 ID=Msa1223050-mRNA-1:cds;Parent=Msa1223050-mRNA-1
chr8_1 CDS 87459916 87459996 87459916 ID=Msa1223050-mRNA-1:cds;Parent=Msa1223050-mRNA-1
chr8_1 CDS 87460192 87460278 87460192 ID=Msa1223050-mRNA-1:cds;Parent=Msa1223050-mRNA-1
chr8_1 CDS 87460400 87460504 87460400 ID=Msa1223050-mRNA-1:cds;Parent=Msa1223050-mRNA-1
chr8_1 CDS 87460748 87460854 87460748 ID=Msa1223050-mRNA-1:cds;Parent=Msa1223050-mRNA-1
chr8_1 CDS 87460936 87460996 87460936 ID=Msa1223050-mRNA-1:cds;Parent=Msa1223050-mRNA-1
chr8_1 CDS 87461184 87461285 87461184 ID=Msa1223050-mRNA-1:cds;Parent=Msa1223050-mRNA-1
chr8_1 three_prime_UTR 87461286 87461571 87461286 ID=Msa1223050-mRNA-1:three_prime_utr;Parent=Msa1223050-mRNA-1
Gene Sequence

>Msa1223050

ATGGCAGTCTCTGCCAGTGGTCAGATAATGCTATCATCTACCGTTCAGCTACGTGAGCCAGGAATGGTGACCAGTAGAAACTTGAAGGTTGTGAAGTTTTGTAATGGAGAAATGATGGGACGAAAGATTGAGCTTCATGCTGCTACCAATGGTTGCACCAAGAGTGTTACTAGGAAAAATATATCCATGTCTCTCACTGCTGACGTGGCTAGCGAATCCAAGTTGAAAAATGCAGATGTGGAAAAAAGGGATCCAAGTACAGTCGTGGCAGTTATACTTGGTGGAGGAGCTGGAACCCGTCTCTTCCCTCTAACTAAGCGACGAGCAAAGCCTGCTGTTCCAATTGGAGGTGCTTATAGGCTGATTGATGTGCCAATGAGTAACTGCATCAATAGTGGGATCAACAAAGTGTATATTCTCACTCAGTTTAATTCAGCCTCACTCAACAGACATATTGCACGTGCTTACAACTCCGGTACTGGAGTCACTTTCGGAGATGGCTATGTTGAGGTTCTTGCTGCAACTCAAACTCCAGGGGAACAAGGTAAAAAGTGGTTTCAAGGTACTGCTGATGCTGTGCGGCAGTTTCACTGGCTCTTTGAGGATCCCAGGAGCAAGGATATTGAGGATGTTTTGATTCTTTCTGGGGATCACCTCTACCGTATGGACTATATGGACTTTGTTAGAGATCATCGAGAGAGCGGTGCAGATATCACTCTTTCTTGTCTGCCAATGGATGACAGCCGCGCCTCAGATTTCGGTCTGATGAAGATTGACAACAAAGGAAGGATCCTTTCATTTAGTGAAAAGCCTAAAGGAGCAGAGCTCAAAGCAATGCAAGTGGATACAACCGTTCTCGGTCTTTCGAAGGATGAAGCTCTAGAAAAACCATATATTGCTTCGATGGGAGTGTATGTCTTCAAGAAGGAGATACTTCTTAATCTATTAAGATGGCGCTTTCCAACTGCAAATGACTTTGGATCAGAGGTCATTCCTGCCTCAGCTAAAGAATTTTACATGAAGGCTTATCTCTTCAACGATTACTGGGAGGACATAGGTACCATCAGATCATTCTTTGAGGCAAATCTAGCCCTCACTGAGCATCCATCCAAGTTTAGCTTTTACGATGCAGCAAAACCTATGTACACATCAAGGAGAAATTTACCACCATCGAAGATTGACAATAGCAAGCTCGTTGATTCAATTATATCACATGGAAGCTTCGTGAATAATGCCTTCATAGAGCATAGTGTAGTTGGAATCAGATCAAGAATAAACTCAAATGTTCATTTAAAGGACACAGTGATGCTTGGAGCTGATTACTATGAAACTGAGGCAGAAGTGGCAGCACAGTTAGCTGAGGGAAGAGTTCCAATAGGAATAGGAGAAAACACCAAAATCAAAGACTGTATTATTGACAAAAATGCTAGAATTGGAAAGAATGTTGTCATAGCAAACTCAGAGGGAGTACAAGAGGCTGATAGATCATCAGAAGGGTTTTACATCCGTTCCGGCGTCACTGTTGTATTGAAAAATTCAACAATTGAAGACGGGCTCGTCATATAA

Protein sequence

>Msa1223050

MAVSASGQIMLSSTVQLREPGMVTSRNLKVVKFCNGEMMGRKIELHAATNGCTKSVTRKNISMSLTADVASESKLKNADVEKRDPSTVVAVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHIARAYNSGTGVTFGDGYVEVLAATQTPGEQGKKWFQGTADAVRQFHWLFEDPRSKDIEDVLILSGDHLYRMDYMDFVRDHRESGADITLSCLPMDDSRASDFGLMKIDNKGRILSFSEKPKGAELKAMQVDTTVLGLSKDEALEKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEVIPASAKEFYMKAYLFNDYWEDIGTIRSFFEANLALTEHPSKFSFYDAAKPMYTSRRNLPPSKIDNSKLVDSIISHGSFVNNAFIEHSVVGIRSRINSNVHLKDTVMLGADYYETEAEVAAQLAEGRVPIGIGENTKIKDCIIDKNARIGKNVVIANSEGVQEADRSSEGFYIRSGVTVVLKNSTIEDGLVI*