AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0999480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0999480 MtrunA17_Chr6g0485671 95.261 422 20 0 28 449 28 449 0.0 834
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0999480 AT5G19540.1 67.654 405 127 3 51 451 54 458 0.0 573
Msa0999480 AT5G19540.2 67.654 405 127 3 51 451 54 458 0.0 573

Find 118 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAAGATTGCCATACTTTA+TGG 0.078842 6_4:-81532752 Msa0999480:CDS
CTTGACAACGCCTCTATTTC+CGG 0.201374 6_4:+81533492 None:intergenic
TGGCGGTGGATCTGTGGTTT+TGG 0.230954 6_4:-81532523 Msa0999480:CDS
TCATCGACTCAACAAGAAAA+TGG 0.230955 6_4:-81536734 Msa0999480:CDS
GGTAATTGAGACAATCTAAT+TGG 0.268697 6_4:+81533894 None:intergenic
AAGACAGTGGCCAGGGCTTC+AGG 0.273860 6_4:-81532599 Msa0999480:CDS
AACACAAAACCTGGAGTAAT+TGG 0.285630 6_4:+81533828 None:intergenic
CGTAGGACTCAAGCTCCTTC+TGG 0.285730 6_4:+81534071 None:intergenic
TCAATTACCAGTCTGAAAAT+TGG 0.290529 6_4:-81533880 Msa0999480:CDS
GAATTTGAAAAGGGTGGTTT+TGG 0.293134 6_4:+81536785 None:intergenic
AATTATTACCATATGATTTA+CGG 0.294473 6_4:-81532166 Msa0999480:three_prime_UTR
ACCTCTTTGGGGCATGGAAA+TGG 0.304134 6_4:-81532275 Msa0999480:three_prime_UTR
GAATTTGAGCCATCTGTCTT+TGG 0.312878 6_4:+81533930 None:intergenic
AAACGCTTCCGATGAGAAAA+AGG 0.312911 6_4:+81533547 None:intergenic
TCTTCGGTACCACGGTGAAT+TGG 0.317020 6_4:-81532493 Msa0999480:CDS
GCTCTTAAAACTTTGAGAAA+TGG 0.323854 6_4:+81532299 None:intergenic
ATAAGATTGCCATACTTTAT+GGG 0.348638 6_4:-81532751 Msa0999480:CDS
TTAAAAGATGATATGATCAT+TGG 0.353086 6_4:-81532429 Msa0999480:exon
CTCCATGGATCAAGATCTTC+CGG 0.359668 6_4:+81533618 None:intergenic
CTCTTAAAACTTTGAGAAAT+GGG 0.360056 6_4:+81532300 None:intergenic
CGATTGTGTCCTTTATGAAA+TGG 0.381202 6_4:-81534050 Msa0999480:CDS
CTTCGGTACCACGGTGAATT+GGG 0.392853 6_4:-81532492 Msa0999480:CDS
CTCAATCTCCTTCCGAGATC+CGG 0.412651 6_4:+81532716 None:intergenic
CCTCTTTGGGGCATGGAAAT+GGG 0.413369 6_4:-81532274 Msa0999480:three_prime_UTR
GTACTTCCTATGCCGCTTGT+TGG 0.414173 6_4:-81533570 Msa0999480:CDS
ATGCATGTAATCATAAGAAA+TGG 0.414753 6_4:-81532248 Msa0999480:three_prime_UTR
TGCTAGCTACCATTTCATAA+AGG 0.415690 6_4:+81534041 None:intergenic
AAGAAAAGAAGGAAAAGCTT+TGG 0.417455 6_4:+81536817 None:intergenic
AATGTTGCAGCCTTCGATTC+CGG 0.423808 6_4:-81533637 Msa0999480:CDS
AAAGGGATTGATGGTTCTAC+TGG 0.424242 6_4:-81536656 Msa0999480:CDS
GGAAAAGCTTTGGAAGTTGA+TGG 0.433291 6_4:+81536827 None:intergenic
GTTTGTAAAAGATGTCTTGT+TGG 0.434246 6_4:-81532081 Msa0999480:three_prime_UTR
GATATAAGAAGAAGTTTCCT+TGG 0.434374 6_4:-81536610 Msa0999480:CDS
TTGCTTTGTAGAAACTGTTC+TGG 0.435673 6_4:+81536707 None:intergenic
CGTTTCTGAAGACAGTGGCC+AGG 0.441159 6_4:-81532607 Msa0999480:CDS
GTGTTGTACTATGATGTTGT+TGG 0.444714 6_4:+81536923 None:intergenic
AGGTTCAAGAAAGGGATTGA+TGG 0.445776 6_4:-81536665 Msa0999480:CDS
GAGGAGAAATCTGTTATAAT+CGG 0.448667 6_4:-81532830 Msa0999480:CDS
GGTGGCCACATGCCGGATCT+CGG 0.452902 6_4:-81532728 Msa0999480:CDS
GGAAAACCAACAAGAAAAGA+AGG 0.456001 6_4:+81536806 None:intergenic
GACAGATGGCTCAAATTCTC+AGG 0.469611 6_4:-81533925 Msa0999480:CDS
ATGTTACCACAGAAATTCTT+CGG 0.470066 6_4:-81532463 Msa0999480:CDS
TTTGTAAAAGATGTCTTGTT+GGG 0.476037 6_4:-81532080 Msa0999480:three_prime_UTR
CTTGTGAACCGTAAATCATA+TGG 0.477047 6_4:+81532158 None:intergenic
AAGTCCAGCATCAGAATATC+CGG 0.478469 6_4:-81533511 Msa0999480:CDS
GGGTAACAGCTTGGTCCATA+AGG 0.478495 6_4:-81532658 Msa0999480:CDS
TTTGAGGGTGGAATTTGAAA+AGG 0.479151 6_4:+81536775 None:intergenic
CGGATCTCGGAAGGAGATTG+AGG 0.480710 6_4:-81532715 Msa0999480:CDS
CGGAAGCGTTTGTGCAAATG+TGG 0.481614 6_4:-81533535 Msa0999480:CDS
CAGCTTGGTCCATAAGGAAA+AGG 0.483406 6_4:-81532652 Msa0999480:CDS
AGAGCTACCTCTTTGGGGCA+TGG 0.486812 6_4:-81532281 Msa0999480:three_prime_UTR
ATTTCATGAGGTTCAAGAAA+GGG 0.490455 6_4:-81536673 Msa0999480:CDS
ATTTCCGGATATTCTGATGC+TGG 0.491392 6_4:+81533507 None:intergenic
TGATGTAAGTGCTGCTATGA+AGG 0.492495 6_4:-81533466 Msa0999480:CDS
TGAGACCTTCCAATTACTCC+AGG 0.492747 6_4:-81533837 Msa0999480:intron
TTGAGGGTGGAATTTGAAAA+GGG 0.494338 6_4:+81536776 None:intergenic
AAAAGGCCAACAAGCGGCAT+AGG 0.495123 6_4:+81533564 None:intergenic
CTGGCCACTGTCTTCAGAAA+CGG 0.497502 6_4:+81532608 None:intergenic
CATCGACTCAACAAGAAAAT+GGG 0.498261 6_4:-81536733 Msa0999480:CDS
TTATGAAATGGTAGCTAGCA+AGG 0.507890 6_4:-81534038 Msa0999480:CDS
GAGTTCGATTTAGTCCCGTC+TGG 0.510649 6_4:-81532689 Msa0999480:CDS
ACTCAAGTGTTCTACATATG+TGG 0.513154 6_4:-81532222 Msa0999480:three_prime_UTR
TAAGATTGCCATACTTTATG+GGG 0.513897 6_4:-81532750 Msa0999480:CDS
CAACGGCCAACCTGAAGCCC+TGG 0.516595 6_4:+81532589 None:intergenic
ATCAGAATATCCGGAAATAG+AGG 0.519580 6_4:-81533502 Msa0999480:CDS
ACGCAGTAACATAGTAAACT+TGG 0.534003 6_4:+81532131 None:intergenic
GTTTCTGAAGACAGTGGCCA+GGG 0.542598 6_4:-81532606 Msa0999480:CDS
GATTTCATGAGGTTCAAGAA+AGG 0.544931 6_4:-81536674 Msa0999480:CDS
CAATCTTGGCGGTGGATCTG+TGG 0.546535 6_4:-81532529 Msa0999480:CDS
CGGAAATAGAGGCGTTGTCA+AGG 0.546770 6_4:-81533491 Msa0999480:CDS
GTAAAGCTTGACACAAAATA+CGG 0.549495 6_4:-81532861 Msa0999480:intron
ACAGAAATTCTTCGGTATGT+TGG 0.549627 6_4:-81532455 Msa0999480:CDS
AGAGAATATGAGAAACCCTA+TGG 0.555242 6_4:-81534008 Msa0999480:CDS
CGATTTAGTCCCGTCTGGTG+TGG 0.555780 6_4:-81532684 Msa0999480:CDS
GAACCTCATGAAATCTGCAA+TGG 0.556856 6_4:+81536682 None:intergenic
TTCCGGAAGATCTTGATCCA+TGG 0.559662 6_4:-81533620 Msa0999480:CDS
TAGTCCCGTCTGGTGTGGAG+TGG 0.563205 6_4:-81532679 Msa0999480:CDS
GTTGAACCGTTATCAGACAT+TGG 0.564903 6_4:-81532570 Msa0999480:CDS
CCCATTTCCATGCCCCAAAG+AGG 0.566399 6_4:+81532274 None:intergenic
GCCACATGCCGGATCTCGGA+AGG 0.567733 6_4:-81532724 Msa0999480:CDS
ACAAAATACGGCAGATGTGG+AGG 0.568405 6_4:-81532849 Msa0999480:CDS
CATAAAAGCTTGGATCTCCA+TGG 0.568942 6_4:+81533603 None:intergenic
GGATCTCGGAAGGAGATTGA+GGG 0.569864 6_4:-81532714 Msa0999480:CDS
GCAAAGCCAATGTCTGATAA+CGG 0.573019 6_4:+81532564 None:intergenic
CCTCAAAAGAGCAATGGACA+AGG 0.574667 6_4:-81532780 Msa0999480:CDS
AGGACTCAAGCTCCTTCTGG+AGG 0.576534 6_4:+81534074 None:intergenic
AGGGTGGAATTTGAAAAGGG+TGG 0.581692 6_4:+81536779 None:intergenic
TCAAGATCTTCCGGAATCGA+AGG 0.584753 6_4:+81533627 None:intergenic
AAAGATGTCTTGTTGGGTGA+AGG 0.587301 6_4:-81532074 None:intergenic
CGAGAACCTCAAAAGAGCAA+TGG 0.588813 6_4:-81532786 Msa0999480:CDS
AATGAAGATGATGATGATGA+AGG 0.589533 6_4:+81536863 None:intergenic
GTGTGGAGTGGGTAACAGCT+TGG 0.589810 6_4:-81532667 Msa0999480:CDS
AGTCCCGTCTGGTGTGGAGT+GGG 0.591895 6_4:-81532678 Msa0999480:CDS
GACACAAAATACGGCAGATG+TGG 0.592912 6_4:-81532852 Msa0999480:CDS
ATTCCATTGCAGATTTCATG+AGG 0.598572 6_4:-81536685 Msa0999480:CDS
AATGTCTGATAACGGTTCAA+CGG 0.600103 6_4:+81532572 None:intergenic
CGGATGTTAGTCTCTTTGCA+AGG 0.600216 6_4:+81533439 None:intergenic
ACGTGAAGCCCATAAAAGCT+TGG 0.603332 6_4:+81533593 None:intergenic
TTACCCACTCCACACCAGAC+GGG 0.604590 6_4:+81532675 None:intergenic
TATGACTCTTAGATCTACAA+AGG 0.610478 6_4:-81533661 Msa0999480:CDS
TCCTTCCGAGATCCGGCATG+TGG 0.610617 6_4:+81532723 None:intergenic
GTCTTGTGTAAAAGCTGTCA+TGG 0.611887 6_4:-81532110 Msa0999480:three_prime_UTR
TTAAAAGGATCACAAACTAG+AGG 0.613345 6_4:-81533974 Msa0999480:CDS
GGAGCTATTCTTCGGTACCA+CGG 0.617266 6_4:-81532501 Msa0999480:CDS
TGGATGCATCCAAAGACAGA+TGG 0.619679 6_4:-81533939 Msa0999480:CDS
AAAGGCTTCAAAAGAGACCA+AGG 0.623114 6_4:+81536593 None:intergenic
CAGTGGCCAGGGCTTCAGGT+TGG 0.625647 6_4:-81532595 Msa0999480:CDS
CAAAACCTGGAGTAATTGGA+AGG 0.627573 6_4:+81533832 None:intergenic
GGACTCAAGCTCCTTCTGGA+GGG 0.634976 6_4:+81534075 None:intergenic
GTTACCCACTCCACACCAGA+CGG 0.637773 6_4:+81532674 None:intergenic
AACATACCGAAGAATTTCTG+TGG 0.646117 6_4:+81532457 None:intergenic
GGAAGCGTTTGTGCAAATGT+GGG 0.646979 6_4:-81533534 Msa0999480:CDS
AAGATTGCCATACTTTATGG+GGG 0.660170 6_4:-81532749 Msa0999480:CDS
CTCAAAAGAGCAATGGACAA+GGG 0.666275 6_4:-81532779 Msa0999480:CDS
TCTCGGAAGGAGATTGAGGG+AGG 0.670087 6_4:-81532711 Msa0999480:CDS
ACTTCCGTTTCTGAAGACAG+TGG 0.695232 6_4:-81532612 Msa0999480:CDS
TTCATAAAGGACACAATCGT+AGG 0.698872 6_4:+81534054 None:intergenic
ATCAGAGACCCAATTCACCG+TGG 0.790349 6_4:+81532484 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATGAACTAAATATTT+CGG + chr6_4:81534202-81534221 None:intergenic 10.0%
!!! ATATTTAGTTCATAATAAAA+TGG - chr6_4:81534204-81534223 Msa0999480:intron 10.0%
!!! TTTCTTGTTTTTTCTTAATT+GGG - chr6_4:81532491-81532510 Msa0999480:CDS 15.0%
!!! TTTTGTTTTTTTGTTTAGAA+TGG - chr6_4:81532518-81532537 Msa0999480:CDS 15.0%
!! TTTAGTAAGTTTATGATAAT+TGG - chr6_4:81533520-81533539 Msa0999480:CDS 15.0%
!! TAAACATTTATGTAAGTATT+TGG + chr6_4:81533597-81533616 None:intergenic 15.0%
!!! TGTATAGTTTTAGATATTTA+TGG - chr6_4:81533976-81533995 Msa0999480:CDS 15.0%
!! AATTATTACCATATGATTTA+CGG - chr6_4:81536868-81536887 Msa0999480:CDS 15.0%
!!! AAAACAAGTTTTGATTTTGA+GGG + chr6_4:81532277-81532296 None:intergenic 20.0%
!!! CTTTCTTGTTTTTTCTTAAT+TGG - chr6_4:81532490-81532509 Msa0999480:CDS 20.0%
!!! TTGTAATTTTTTTTCCCTTT+TGG - chr6_4:81532630-81532649 Msa0999480:CDS 20.0%
!!! TTAAGTTGTTTATCCAAAAA+GGG + chr6_4:81532678-81532697 None:intergenic 20.0%
!! TTACAATCAAAGTTAAAATG+AGG - chr6_4:81533454-81533473 Msa0999480:CDS 20.0%
!! GAAAGATTATGAAGAATTAT+GGG - chr6_4:81533874-81533893 Msa0999480:CDS 20.0%
!!! ATAGTTTTAGATATTTATGG+AGG - chr6_4:81533979-81533998 Msa0999480:CDS 20.0%
!!! AATATCTCCTATTAGTTTAT+AGG - chr6_4:81535894-81535913 Msa0999480:intron 20.0%
!! TTAAAAGATGATATGATCAT+TGG - chr6_4:81536605-81536624 Msa0999480:CDS 20.0%
! ATCATAGTACAACACAAAAA+TGG - chr6_4:81532119-81532138 Msa0999480:three_prime_UTR 25.0%
!!! CAAAACAAGTTTTGATTTTG+AGG + chr6_4:81532278-81532297 None:intergenic 25.0%
! TTTAAACCAACCTGAAAAAA+AGG + chr6_4:81532462-81532481 None:intergenic 25.0%
!!! TTTTTTTCCCTTTTGGAATT+TGG - chr6_4:81532637-81532656 Msa0999480:CDS 25.0%
! AAAACTACCAAATTCCAAAA+GGG + chr6_4:81532647-81532666 None:intergenic 25.0%
! TAAAACTACCAAATTCCAAA+AGG + chr6_4:81532648-81532667 None:intergenic 25.0%
!! CTTAAGTTGTTTATCCAAAA+AGG + chr6_4:81532679-81532698 None:intergenic 25.0%
! TCTGTTTCCTTATTAGTTAT+AGG - chr6_4:81532752-81532771 Msa0999480:CDS 25.0%
! TATTTATATGTTGTTGACCA+TGG - chr6_4:81533149-81533168 Msa0999480:intron 25.0%
! GATGATAACTCTAACATAAT+TGG - chr6_4:81533171-81533190 Msa0999480:intron 25.0%
! AAATCAATCAGCGAAAAAAA+GGG + chr6_4:81533229-81533248 None:intergenic 25.0%
! AAAATCAATCAGCGAAAAAA+AGG + chr6_4:81533230-81533249 None:intergenic 25.0%
!!! TTTTTTCGCTGATTGATTTT+TGG - chr6_4:81533230-81533249 Msa0999480:intron 25.0%
! TTATCAGTAGTGTTAGTATT+GGG - chr6_4:81533362-81533381 Msa0999480:intron 25.0%
! GGAAAGATTATGAAGAATTA+TGG - chr6_4:81533873-81533892 Msa0999480:CDS 25.0%
!! TTTTGTTCAAACTTTCGTTT+AGG - chr6_4:81534073-81534092 Msa0999480:CDS 25.0%
! AATAATATTAGCAGTACCTT+TGG - chr6_4:81534308-81534327 Msa0999480:intron 25.0%
! GTATGTTATGATTCTCATTT+CGG - chr6_4:81534463-81534482 Msa0999480:intron 25.0%
! AATACCTGCTCATAAAAATT+AGG + chr6_4:81534933-81534952 None:intergenic 25.0%
!!! TTAACCTTTTTTTAGCCATA+GGG + chr6_4:81535044-81535063 None:intergenic 25.0%
!!! TTTAACCTTTTTTTAGCCAT+AGG + chr6_4:81535045-81535064 None:intergenic 25.0%
! ATGGCTAAAAAAAGGTTAAA+AGG - chr6_4:81535045-81535064 Msa0999480:intron 25.0%
!!! ACTAGAGGTTTTAACATTAT+TGG - chr6_4:81535075-81535094 Msa0999480:intron 25.0%
!!! TTTTTATTTCAGCAAGCAAA+AGG - chr6_4:81535323-81535342 Msa0999480:intron 25.0%
! GAGTTTGTATAAATTTGTAC+TGG + chr6_4:81535643-81535662 None:intergenic 25.0%
! TTTATCATCAATACTCAAGT+TGG + chr6_4:81536144-81536163 None:intergenic 25.0%
! AATAAGATTGCCATACTTTA+TGG - chr6_4:81536282-81536301 Msa0999480:intron 25.0%
! ATAAGATTGCCATACTTTAT+GGG - chr6_4:81536283-81536302 Msa0999480:intron 25.0%
!! CTCTTAAAACTTTGAGAAAT+GGG + chr6_4:81536737-81536756 None:intergenic 25.0%
! ATGCATGTAATCATAAGAAA+TGG - chr6_4:81536786-81536805 Msa0999480:CDS 25.0%
!! TTTGTAAAAGATGTCTTGTT+GGG - chr6_4:81536954-81536973 Msa0999480:five_prime_UTR 25.0%
! AATGAAGATGATGATGATGA+AGG + chr6_4:81532174-81532193 None:intergenic 30.0%
AAGAAAAGAAGGAAAAGCTT+TGG + chr6_4:81532220-81532239 None:intergenic 30.0%
ATTTCATGAGGTTCAAGAAA+GGG - chr6_4:81532361-81532380 Msa0999480:three_prime_UTR 30.0%
GATATAAGAAGAAGTTTCCT+TGG - chr6_4:81532424-81532443 Msa0999480:three_prime_UTR 30.0%
!!! TCTTTTGAAGCCTTTTTTTC+AGG - chr6_4:81532449-81532468 Msa0999480:CDS 30.0%
GAAACAGCCTATAACTAATA+AGG + chr6_4:81532762-81532781 None:intergenic 30.0%
TATGTTAGAGTTATCATCCA+TGG + chr6_4:81533169-81533188 None:intergenic 30.0%
AGACAATACATACTCTTCAT+CGG + chr6_4:81533200-81533219 None:intergenic 30.0%
!! TAGTTTTCAAGAGCAACTTA+AGG - chr6_4:81533259-81533278 Msa0999480:intron 30.0%
CTTATCAGTAGTGTTAGTAT+TGG - chr6_4:81533361-81533380 Msa0999480:intron 30.0%
TATCAGTAGTGTTAGTATTG+GGG - chr6_4:81533363-81533382 Msa0999480:intron 30.0%
ATCCAACAAAAGAAATGGAT+AGG + chr6_4:81533745-81533764 None:intergenic 30.0%
! ATCCATTTCTTTTGTTGGAT+AGG - chr6_4:81533745-81533764 Msa0999480:intron 30.0%
TGTACATCTATTGATGTTGT+TGG - chr6_4:81534105-81534124 Msa0999480:intron 30.0%
CATTGAGAATAATGACTTCT+CGG - chr6_4:81534569-81534588 Msa0999480:intron 30.0%
ACATTTAAGTCTCACTTCTT+AGG + chr6_4:81534739-81534758 None:intergenic 30.0%
AAGTGAGACTTAAATGTCAA+AGG - chr6_4:81534742-81534761 Msa0999480:intron 30.0%
AGTGAGACTTAAATGTCAAA+GGG - chr6_4:81534743-81534762 Msa0999480:intron 30.0%
TAAAAGTTAATACTGCTTCG+AGG + chr6_4:81534899-81534918 None:intergenic 30.0%
! TGATCCTAATTTTTATGAGC+AGG - chr6_4:81534926-81534945 Msa0999480:intron 30.0%
! TTTTATGAGCAGGTATTTTC+TGG - chr6_4:81534936-81534955 Msa0999480:intron 30.0%
TTAAAAGGATCACAAACTAG+AGG - chr6_4:81535060-81535079 Msa0999480:intron 30.0%
GGTAATTGAGACAATCTAAT+TGG + chr6_4:81535143-81535162 None:intergenic 30.0%
TCAATTACCAGTCTGAAAAT+TGG - chr6_4:81535154-81535173 Msa0999480:intron 30.0%
AAAATTAGCAACACAAAACC+TGG + chr6_4:81535218-81535237 None:intergenic 30.0%
TATGACTCTTAGATCTACAA+AGG - chr6_4:81535373-81535392 Msa0999480:intron 30.0%
!!! TTGTCATTTTAGTGCATGTT+TGG - chr6_4:81535704-81535723 Msa0999480:intron 30.0%
GTAAAGCTTGACACAAAATA+CGG - chr6_4:81536173-81536192 Msa0999480:intron 30.0%
GAGGAGAAATCTGTTATAAT+CGG - chr6_4:81536204-81536223 Msa0999480:intron 30.0%
TAAGATTGCCATACTTTATG+GGG - chr6_4:81536284-81536303 Msa0999480:intron 30.0%
! ATCAAGTTTCCTTTTCCTTA+TGG + chr6_4:81536394-81536413 None:intergenic 30.0%
ATGTTACCACAGAAATTCTT+CGG - chr6_4:81536571-81536590 Msa0999480:intron 30.0%
! GCTCTTAAAACTTTGAGAAA+TGG + chr6_4:81536738-81536757 None:intergenic 30.0%
GTTTGTAAAAGATGTCTTGT+TGG - chr6_4:81536953-81536972 Msa0999480:five_prime_UTR 30.0%
! ATGTTGTTGGATTTTGTTGC+AGG + chr6_4:81532101-81532120 None:intergenic 35.0%
GTGTTGTACTATGATGTTGT+TGG + chr6_4:81532114-81532133 None:intergenic 35.0%
! GCTTTTCCTTCTTTTCTTGT+TGG - chr6_4:81532222-81532241 Msa0999480:three_prime_UTR 35.0%
GGAAAACCAACAAGAAAAGA+AGG + chr6_4:81532231-81532250 None:intergenic 35.0%
! GAATTTGAAAAGGGTGGTTT+TGG + chr6_4:81532252-81532271 None:intergenic 35.0%
TTGAGGGTGGAATTTGAAAA+GGG + chr6_4:81532261-81532280 None:intergenic 35.0%
TTTGAGGGTGGAATTTGAAA+AGG + chr6_4:81532262-81532281 None:intergenic 35.0%
!!! ACAAGTTTTGATTTTGAGGG+TGG + chr6_4:81532274-81532293 None:intergenic 35.0%
!! TCATCGACTCAACAAGAAAA+TGG - chr6_4:81532300-81532319 Msa0999480:three_prime_UTR 35.0%
!! CATCGACTCAACAAGAAAAT+GGG - chr6_4:81532301-81532320 Msa0999480:three_prime_UTR 35.0%
TTGCTTTGTAGAAACTGTTC+TGG + chr6_4:81532330-81532349 None:intergenic 35.0%
ATTCCATTGCAGATTTCATG+AGG - chr6_4:81532349-81532368 Msa0999480:three_prime_UTR 35.0%
GATTTCATGAGGTTCAAGAA+AGG - chr6_4:81532360-81532379 Msa0999480:three_prime_UTR 35.0%
!!! TTGAAGCCTTTTTTTCAGGT+TGG - chr6_4:81532453-81532472 Msa0999480:CDS 35.0%
!!! GTTTTAGCTTAGTCCCTTTT+TGG - chr6_4:81532662-81532681 Msa0999480:CDS 35.0%
TATGGAAATAAGCAGAAAGC+AGG - chr6_4:81532803-81532822 Msa0999480:CDS 35.0%
!! AGACTGTTCAAGAGAGTATT+TGG + chr6_4:81532853-81532872 None:intergenic 35.0%
TTAGAACTCAATGAGTTCCA+TGG - chr6_4:81533029-81533048 Msa0999480:intron 35.0%
!! CGCTGATTGATTTTTGGATT+TGG - chr6_4:81533236-81533255 Msa0999480:intron 35.0%
! AGAGCAACTTAAGGTTTGTT+TGG - chr6_4:81533268-81533287 Msa0999480:intron 35.0%
! ATCAGTAGTGTTAGTATTGG+GGG - chr6_4:81533364-81533383 Msa0999480:intron 35.0%
! AGCCTATCCATTTCTTTTGT+TGG - chr6_4:81533740-81533759 Msa0999480:intron 35.0%
AGCCTATCCAACAAAAGAAA+TGG + chr6_4:81533750-81533769 None:intergenic 35.0%
AGTCTTAAATCCAAACACTC+TGG - chr6_4:81533784-81533803 Msa0999480:intron 35.0%
AAGAAATTTGGGTATGGATG+AGG - chr6_4:81533822-81533841 Msa0999480:intron 35.0%
AGAAATTTGGGTATGGATGA+GGG - chr6_4:81533823-81533842 Msa0999480:intron 35.0%
!!! ACAATTCACAGGGTTTTTTG+AGG - chr6_4:81533852-81533871 Msa0999480:CDS 35.0%
AAATCAATCATGAGAACAGG+TGG - chr6_4:81533897-81533916 Msa0999480:CDS 35.0%
AACCTTATCCATAACCACAT+GGG + chr6_4:81534028-81534047 None:intergenic 35.0%
AAACCTTATCCATAACCACA+TGG + chr6_4:81534029-81534048 None:intergenic 35.0%
TGTGGTTATGGATAAGGTTT+AGG - chr6_4:81534029-81534048 Msa0999480:CDS 35.0%
!! AATGATTAGCACTCTGAGAT+TGG + chr6_4:81534055-81534074 None:intergenic 35.0%
! ATTGGAGGAGTATGTGTAAA+TGG - chr6_4:81534133-81534152 Msa0999480:intron 35.0%
CATCTTCATGACTTCACAAA+AGG + chr6_4:81534390-81534409 None:intergenic 35.0%
TCATATGAGCATAAGTCCAA+AGG + chr6_4:81534539-81534558 None:intergenic 35.0%
CATTGAGTGAAATTTGTCGT+AGG - chr6_4:81534659-81534678 Msa0999480:intron 35.0%
GTTATGAGCATAAGCCTAAA+GGG + chr6_4:81534808-81534827 None:intergenic 35.0%
AGTTATGAGCATAAGCCTAA+AGG + chr6_4:81534809-81534828 None:intergenic 35.0%
TTCATAAAGGACACAATCGT+AGG + chr6_4:81534983-81535002 None:intergenic 35.0%
CGATTGTGTCCTTTATGAAA+TGG - chr6_4:81534984-81535003 Msa0999480:intron 35.0%
TGCTAGCTACCATTTCATAA+AGG + chr6_4:81534996-81535015 None:intergenic 35.0%
TTATGAAATGGTAGCTAGCA+AGG - chr6_4:81534996-81535015 Msa0999480:intron 35.0%
AGAGAATATGAGAAACCCTA+TGG - chr6_4:81535026-81535045 Msa0999480:intron 35.0%
GAAACCCTATGGCTAAAAAA+AGG - chr6_4:81535037-81535056 Msa0999480:intron 35.0%
AACACAAAACCTGGAGTAAT+TGG + chr6_4:81535209-81535228 None:intergenic 35.0%
! ATGGAGATCCAAGCTTTTAT+GGG - chr6_4:81535433-81535452 Msa0999480:intron 35.0%
ATCAGAATATCCGGAAATAG+AGG - chr6_4:81535532-81535551 Msa0999480:intron 35.0%
AGATCATGCCAAAATCATTG+TGG + chr6_4:81535762-81535781 None:intergenic 35.0%
TGAGTTTGACGAAATCATGT+CGG + chr6_4:81535802-81535821 None:intergenic 35.0%
!!! GATCCCACTGTTTTAGAAAT+GGG + chr6_4:81535960-81535979 None:intergenic 35.0%
!!! AGATCCCACTGTTTTAGAAA+TGG + chr6_4:81535961-81535980 None:intergenic 35.0%
!! TTCAACCAAGTTTTATGTCC+TGG + chr6_4:81536062-81536081 None:intergenic 35.0%
AAGATTGCCATACTTTATGG+GGG - chr6_4:81536285-81536304 Msa0999480:intron 35.0%
!! AATGTCTGATAACGGTTCAA+CGG + chr6_4:81536465-81536484 None:intergenic 35.0%
AACATACCGAAGAATTTCTG+TGG + chr6_4:81536580-81536599 None:intergenic 35.0%
ACAGAAATTCTTCGGTATGT+TGG - chr6_4:81536579-81536598 Msa0999480:intron 35.0%
!!! AGTTTTAAGAGCTACCTCTT+TGG - chr6_4:81536746-81536765 Msa0999480:CDS 35.0%
!!! GTTTTAAGAGCTACCTCTTT+GGG - chr6_4:81536747-81536766 Msa0999480:CDS 35.0%
!! TTTTAAGAGCTACCTCTTTG+GGG - chr6_4:81536748-81536767 Msa0999480:CDS 35.0%
ACTCAAGTGTTCTACATATG+TGG - chr6_4:81536812-81536831 Msa0999480:CDS 35.0%
CTTGTGAACCGTAAATCATA+TGG + chr6_4:81536879-81536898 None:intergenic 35.0%
ACGCAGTAACATAGTAAACT+TGG + chr6_4:81536906-81536925 None:intergenic 35.0%
!! GGAAAAGCTTTGGAAGTTGA+TGG + chr6_4:81532210-81532229 None:intergenic 40.0%
GAACCTCATGAAATCTGCAA+TGG + chr6_4:81532355-81532374 None:intergenic 40.0%
AGGTTCAAGAAAGGGATTGA+TGG - chr6_4:81532369-81532388 Msa0999480:three_prime_UTR 40.0%
! AAAGGGATTGATGGTTCTAC+TGG - chr6_4:81532378-81532397 Msa0999480:three_prime_UTR 40.0%
AAAGGCTTCAAAAGAGACCA+AGG + chr6_4:81532444-81532463 None:intergenic 40.0%
! TCTGTTGTTGTTGTTGTTGC+AGG - chr6_4:81532554-81532573 Msa0999480:CDS 40.0%
! GCTGTTTCCATAAGCTATCA+TGG - chr6_4:81532774-81532793 Msa0999480:CDS 40.0%
AGTCTCTCCATGATAGCTTA+TGG + chr6_4:81532784-81532803 None:intergenic 40.0%
AAGCTATCATGGAGAGACTA+TGG - chr6_4:81532785-81532804 Msa0999480:CDS 40.0%
ACAGCAACTTAGAGCATGTT+TGG - chr6_4:81532934-81532953 Msa0999480:intron 40.0%
AGCTTCTTGAGTTCTCAAAG+AGG - chr6_4:81533066-81533085 Msa0999480:intron 40.0%
AAACACTCTCACTGAGTGTT+TGG - chr6_4:81533683-81533702 Msa0999480:CDS 40.0%
GTTAGGCGGCAAAGAAATTT+GGG - chr6_4:81533811-81533830 Msa0999480:intron 40.0%
GAAATTTGGGTATGGATGAG+GGG - chr6_4:81533824-81533843 Msa0999480:intron 40.0%
GGGAAATCAATCATGAGAAC+AGG - chr6_4:81533894-81533913 Msa0999480:CDS 40.0%
AATCATGAGAACAGGTGGAT+AGG - chr6_4:81533902-81533921 Msa0999480:CDS 40.0%
GTCAGGAGACTTAATTTCTG+AGG - chr6_4:81533927-81533946 Msa0999480:CDS 40.0%
CTGAGGTGAACAAGTAGAAT+TGG - chr6_4:81533944-81533963 Msa0999480:CDS 40.0%
!! TTGATGTTGTTGGTGACGAT+TGG - chr6_4:81534115-81534134 Msa0999480:intron 40.0%
TAGGCTTATAAGCCTCACTT+AGG + chr6_4:81534498-81534517 None:intergenic 40.0%
TAAGTGAGGCTTATAAGCCT+AGG - chr6_4:81534497-81534516 Msa0999480:intron 40.0%
AAGTGAGGCTTATAAGCCTA+GGG - chr6_4:81534498-81534517 Msa0999480:intron 40.0%
GATTCTCTCACCTAATCCTT+TGG - chr6_4:81534520-81534539 Msa0999480:intron 40.0%
GAGCATAAGTCCAAAGGATT+AGG + chr6_4:81534533-81534552 None:intergenic 40.0%
AGAATAATGACTTCTCGGTC+AGG - chr6_4:81534574-81534593 Msa0999480:intron 40.0%
GAATAATGACTTCTCGGTCA+GGG - chr6_4:81534575-81534594 Msa0999480:intron 40.0%
ACTTCACTCAACTTCTTCAG+TGG + chr6_4:81534624-81534643 None:intergenic 40.0%
GAAGAAGTTGAGTGAAGTGT+CGG - chr6_4:81534626-81534645 Msa0999480:intron 40.0%
CAAAGGGTTCTTTCACCTAA+TGG - chr6_4:81534759-81534778 Msa0999480:intron 40.0%
TCGCAAAACACTAGTCCATT+AGG + chr6_4:81534777-81534796 None:intergenic 40.0%
GAATTTGAGCCATCTGTCTT+TGG + chr6_4:81535107-81535126 None:intergenic 40.0%
! CATGTTGCCAATTTTCAGAC+TGG + chr6_4:81535164-81535183 None:intergenic 40.0%
CAAAACCTGGAGTAATTGGA+AGG + chr6_4:81535205-81535224 None:intergenic 40.0%
CATAAAAGCTTGGATCTCCA+TGG + chr6_4:81535434-81535453 None:intergenic 40.0%
! CATGGAGATCCAAGCTTTTA+TGG - chr6_4:81535432-81535451 Msa0999480:intron 40.0%
ATGAGAAAAAGGCCAACAAG+CGG + chr6_4:81535479-81535498 None:intergenic 40.0%
!!! CTTGTTGGCCTTTTTCTCAT+CGG - chr6_4:81535479-81535498 Msa0999480:intron 40.0%
AAACGCTTCCGATGAGAAAA+AGG + chr6_4:81535490-81535509 None:intergenic 40.0%
AAGTCCAGCATCAGAATATC+CGG - chr6_4:81535523-81535542 Msa0999480:intron 40.0%
ATTTCCGGATATTCTGATGC+TGG + chr6_4:81535530-81535549 None:intergenic 40.0%
! TGATGTAAGTGCTGCTATGA+AGG - chr6_4:81535568-81535587 Msa0999480:intron 40.0%
CAAATTGAGAGGGACTTACT+CGG + chr6_4:81535618-81535637 None:intergenic 40.0%
TGTACTGGACCAAATTGAGA+GGG + chr6_4:81535628-81535647 None:intergenic 40.0%
TTGTACTGGACCAAATTGAG+AGG + chr6_4:81535629-81535648 None:intergenic 40.0%
ATACAAACTCTTGCTCCTGT+AGG - chr6_4:81535653-81535672 Msa0999480:intron 40.0%
TACAAACTCTTGCTCCTGTA+GGG - chr6_4:81535654-81535673 Msa0999480:intron 40.0%
TTAGTGCATGTTTGGATCCA+TGG - chr6_4:81535712-81535731 Msa0999480:intron 40.0%
! ACTGTGTGCCACAATGATTT+TGG - chr6_4:81535751-81535770 Msa0999480:intron 40.0%
GGAGGGACCTATAAACTAAT+AGG + chr6_4:81535904-81535923 None:intergenic 40.0%
!! TCCTTTTGAAAGTGTAGTCC+AGG - chr6_4:81536041-81536060 Msa0999480:intron 40.0%
TCCTGGACTACACTTTCAAA+AGG + chr6_4:81536045-81536064 None:intergenic 40.0%
GTAGTCCAGGACATAAAACT+TGG - chr6_4:81536054-81536073 Msa0999480:intron 40.0%
CTCAAAAGAGCAATGGACAA+GGG - chr6_4:81536255-81536274 Msa0999480:intron 40.0%
GTTGAACCGTTATCAGACAT+TGG - chr6_4:81536464-81536483 Msa0999480:intron 40.0%
GCAAAGCCAATGTCTGATAA+CGG + chr6_4:81536473-81536492 None:intergenic 40.0%
! GCTCATCTTTTCGTCAATCT+TGG - chr6_4:81536491-81536510 Msa0999480:intron 40.0%
! CATCTTTTCGTCAATCTTGG+CGG - chr6_4:81536494-81536513 Msa0999480:intron 40.0%
!!! TGGTTTTGGGAGCTATTCTT+CGG - chr6_4:81536525-81536544 Msa0999480:intron 40.0%
GTCTTGTGTAAAAGCTGTCA+TGG - chr6_4:81536924-81536943 Msa0999480:five_prime_UTR 40.0%
AGGGTGGAATTTGAAAAGGG+TGG + chr6_4:81532258-81532277 None:intergenic 45.0%
CGTTAGGCGGCAAAGAAATT+TGG - chr6_4:81533810-81533829 Msa0999480:intron 45.0%
GCGGCAAAGAAATTTGGGTA+TGG - chr6_4:81533816-81533835 Msa0999480:intron 45.0%
AGGGGCTGATACAATTCACA+GGG - chr6_4:81533842-81533861 Msa0999480:CDS 45.0%
AGCCCATGTGGTTATGGATA+AGG - chr6_4:81534023-81534042 Msa0999480:CDS 45.0%
!! ATGTTGTTGGTGACGATTGG+AGG - chr6_4:81534118-81534137 Msa0999480:intron 45.0%
ATCCTGACATTCAACTGCCA+CGG - chr6_4:81534242-81534261 Msa0999480:intron 45.0%
TATTAGCAGTACCTTTGGCG+TGG - chr6_4:81534313-81534332 Msa0999480:intron 45.0%
ATTAGCAGTACCTTTGGCGT+GGG - chr6_4:81534314-81534333 Msa0999480:intron 45.0%
GATTAGGTGAGAGAATCCCT+AGG + chr6_4:81534517-81534536 None:intergenic 45.0%
TGGATGCATCCAAAGACAGA+TGG - chr6_4:81535095-81535114 Msa0999480:intron 45.0%
GACAGATGGCTCAAATTCTC+AGG - chr6_4:81535109-81535128 Msa0999480:intron 45.0%
TGAGACCTTCCAATTACTCC+AGG - chr6_4:81535197-81535216 Msa0999480:intron 45.0%
AATGTTGCAGCCTTCGATTC+CGG - chr6_4:81535397-81535416 Msa0999480:intron 45.0%
TCAAGATCTTCCGGAATCGA+AGG + chr6_4:81535410-81535429 None:intergenic 45.0%
TTCCGGAAGATCTTGATCCA+TGG - chr6_4:81535414-81535433 Msa0999480:intron 45.0%
CTCCATGGATCAAGATCTTC+CGG + chr6_4:81535419-81535438 None:intergenic 45.0%
ACGTGAAGCCCATAAAAGCT+TGG + chr6_4:81535444-81535463 None:intergenic 45.0%
!! GGAAGCGTTTGTGCAAATGT+GGG - chr6_4:81535500-81535519 Msa0999480:intron 45.0%
CTTGACAACGCCTCTATTTC+CGG + chr6_4:81535545-81535564 None:intergenic 45.0%
! CGGATGTTAGTCTCTTTGCA+AGG + chr6_4:81535598-81535617 None:intergenic 45.0%
CGAGTAAGTCCCTCTCAATT+TGG - chr6_4:81535616-81535635 Msa0999480:intron 45.0%
GTTTGGATCCATGGTGAGTT+TGG - chr6_4:81535721-81535740 Msa0999480:intron 45.0%
TGATTCAGCCAAACTCACCA+TGG + chr6_4:81535732-81535751 None:intergenic 45.0%
TAGGTCCCTCCAGATTTATG+TGG - chr6_4:81535913-81535932 Msa0999480:intron 45.0%
AGGTCCCTCCAGATTTATGT+GGG - chr6_4:81535914-81535933 Msa0999480:intron 45.0%
! TGGGCCCTGCATAATTTTGT+GGG - chr6_4:81535933-81535952 Msa0999480:intron 45.0%
!! GGGCCCATTTCTAAAACAGT+GGG - chr6_4:81535954-81535973 Msa0999480:intron 45.0%
GACACAAAATACGGCAGATG+TGG - chr6_4:81536182-81536201 Msa0999480:intron 45.0%
ACAAAATACGGCAGATGTGG+AGG - chr6_4:81536185-81536204 Msa0999480:intron 45.0%
CGAGAACCTCAAAAGAGCAA+TGG - chr6_4:81536248-81536267 Msa0999480:intron 45.0%
! CCTTGTCCATTGCTCTTTTG+AGG + chr6_4:81536257-81536276 None:intergenic 45.0%
CCTCAAAAGAGCAATGGACA+AGG - chr6_4:81536254-81536273 Msa0999480:intron 45.0%
ATTGCCATACTTTATGGGGG+TGG - chr6_4:81536288-81536307 Msa0999480:intron 45.0%
CAGCTTGGTCCATAAGGAAA+AGG - chr6_4:81536382-81536401 Msa0999480:intron 45.0%
! ACTTCCGTTTCTGAAGACAG+TGG - chr6_4:81536422-81536441 Msa0999480:intron 45.0%
!! GCTTCTCTGAAGCTAGTCCA+TGG + chr6_4:81533049-81533068 None:intergenic 50.0%
!! GTGTTAGTATTGGGGGCACT+TGG - chr6_4:81533371-81533390 Msa0999480:intron 50.0%
! CCTAACGAGTCCAGAGTGTT+TGG + chr6_4:81533797-81533816 None:intergenic 50.0%
CCAAACACTCTGGACTCGTT+AGG - chr6_4:81533794-81533813 Msa0999480:intron 50.0%
AACACTCTGGACTCGTTAGG+CGG - chr6_4:81533797-81533816 Msa0999480:intron 50.0%
GAGGGGCTGATACAATTCAC+AGG - chr6_4:81533841-81533860 Msa0999480:CDS 50.0%
GAACAGGTGGATAGGATGTC+AGG - chr6_4:81533910-81533929 Msa0999480:CDS 50.0%
GTTTGCAGCCCATGTGGTTA+TGG - chr6_4:81534017-81534036 Msa0999480:CDS 50.0%
TCCTGACATTCAACTGCCAC+GGG - chr6_4:81534243-81534262 Msa0999480:intron 50.0%
! TTCTCGGTCAGGGTTCTGAT+TGG - chr6_4:81534585-81534604 Msa0999480:intron 50.0%
!! AGGCATCGATCCTCGAATGA+TGG - chr6_4:81534679-81534698 Msa0999480:intron 50.0%
! ATCCTCGAATGATGGTGCAG+TGG - chr6_4:81534687-81534706 Msa0999480:intron 50.0%
TTGCGACGAGCTTTCCCTTT+AGG - chr6_4:81534791-81534810 Msa0999480:intron 50.0%
!! GTATTTTCTGGCCCTCCAGA+AGG - chr6_4:81534948-81534967 Msa0999480:intron 50.0%
! GTACTTCCTATGCCGCTTGT+TGG - chr6_4:81535464-81535483 Msa0999480:intron 50.0%
AAAAGGCCAACAAGCGGCAT+AGG + chr6_4:81535473-81535492 None:intergenic 50.0%
!! CGGAAGCGTTTGTGCAAATG+TGG - chr6_4:81535499-81535518 Msa0999480:intron 50.0%
!! CGGAAATAGAGGCGTTGTCA+AGG - chr6_4:81535543-81535562 Msa0999480:intron 50.0%
CTCGTAGCTCAAAACCCTAC+AGG + chr6_4:81535671-81535690 None:intergenic 50.0%
AGGGCCCACATAAATCTGGA+GGG + chr6_4:81535921-81535940 None:intergenic 50.0%
ATGCAGGGCCCACATAAATC+TGG + chr6_4:81535925-81535944 None:intergenic 50.0%
! GTGGGCCCTGCATAATTTTG+TGG - chr6_4:81535932-81535951 Msa0999480:intron 50.0%
! GGGCCCTGCATAATTTTGTG+GGG - chr6_4:81535934-81535953 Msa0999480:intron 50.0%
GGGCCCCACAAAATTATGCA+GGG + chr6_4:81535940-81535959 None:intergenic 50.0%
TGGGCCCCACAAAATTATGC+AGG + chr6_4:81535941-81535960 None:intergenic 50.0%
!! GGGGCCCATTTCTAAAACAG+TGG - chr6_4:81535953-81535972 Msa0999480:intron 50.0%
CTCAATCTCCTTCCGAGATC+CGG + chr6_4:81536321-81536340 None:intergenic 50.0%
GGATCTCGGAAGGAGATTGA+GGG - chr6_4:81536320-81536339 Msa0999480:intron 50.0%
GAGTTCGATTTAGTCCCGTC+TGG - chr6_4:81536345-81536364 Msa0999480:intron 50.0%
GGGTAACAGCTTGGTCCATA+AGG - chr6_4:81536376-81536395 Msa0999480:intron 50.0%
CTGGCCACTGTCTTCAGAAA+CGG + chr6_4:81536429-81536448 None:intergenic 50.0%
! GTTTCTGAAGACAGTGGCCA+GGG - chr6_4:81536428-81536447 Msa0999480:intron 50.0%
! CTTTTCGTCAATCTTGGCGG+TGG - chr6_4:81536497-81536516 Msa0999480:intron 50.0%
GGAGCTATTCTTCGGTACCA+CGG - chr6_4:81536533-81536552 Msa0999480:intron 50.0%
TCTTCGGTACCACGGTGAAT+TGG - chr6_4:81536541-81536560 Msa0999480:intron 50.0%
CTTCGGTACCACGGTGAATT+GGG - chr6_4:81536542-81536561 Msa0999480:intron 50.0%
ATCAGAGACCCAATTCACCG+TGG + chr6_4:81536553-81536572 None:intergenic 50.0%
!! ACCTCTTTGGGGCATGGAAA+TGG - chr6_4:81536759-81536778 Msa0999480:CDS 50.0%
!! CCTCTTTGGGGCATGGAAAT+GGG - chr6_4:81536760-81536779 Msa0999480:CDS 50.0%
ATGGAGGTCTAGCAGACCAC+TGG - chr6_4:81533995-81534014 Msa0999480:CDS 55.0%
AGTTCAGCAACCCACGCCAA+AGG + chr6_4:81534327-81534346 None:intergenic 55.0%
CGGAGAGTCTCACCTAAGTG+AGG - chr6_4:81534483-81534502 Msa0999480:intron 55.0%
! TCGGTCAGGGTTCTGATTGG+TGG - chr6_4:81534588-81534607 Msa0999480:intron 55.0%
CACCACTGCACCATCATTCG+AGG + chr6_4:81534692-81534711 None:intergenic 55.0%
GTGGTGTGAGTCTCACACTG+TGG - chr6_4:81534706-81534725 Msa0999480:intron 55.0%
GGACTCAAGCTCCTTCTGGA+GGG + chr6_4:81534962-81534981 None:intergenic 55.0%
AGGACTCAAGCTCCTTCTGG+AGG + chr6_4:81534963-81534982 None:intergenic 55.0%
CGTAGGACTCAAGCTCCTTC+TGG + chr6_4:81534966-81534985 None:intergenic 55.0%
CAGGGCCCACATAAATCTGG+AGG + chr6_4:81535922-81535941 None:intergenic 55.0%
GTGGCCACCCCCATAAAGTA+TGG + chr6_4:81536295-81536314 None:intergenic 55.0%
CGGATCTCGGAAGGAGATTG+AGG - chr6_4:81536319-81536338 Msa0999480:intron 55.0%
TCTCGGAAGGAGATTGAGGG+AGG - chr6_4:81536323-81536342 Msa0999480:intron 55.0%
CGATTTAGTCCCGTCTGGTG+TGG - chr6_4:81536350-81536369 Msa0999480:intron 55.0%
TTACCCACTCCACACCAGAC+GGG + chr6_4:81536362-81536381 None:intergenic 55.0%
GTTACCCACTCCACACCAGA+CGG + chr6_4:81536363-81536382 None:intergenic 55.0%
GTGTGGAGTGGGTAACAGCT+TGG - chr6_4:81536367-81536386 Msa0999480:intron 55.0%
! CGTTTCTGAAGACAGTGGCC+AGG - chr6_4:81536427-81536446 Msa0999480:intron 55.0%
CAATCTTGGCGGTGGATCTG+TGG - chr6_4:81536505-81536524 Msa0999480:intron 55.0%
! TGGCGGTGGATCTGTGGTTT+TGG - chr6_4:81536511-81536530 Msa0999480:intron 55.0%
! GGCGGTGGATCTGTGGTTTT+GGG - chr6_4:81536512-81536531 Msa0999480:intron 55.0%
!! AGAGCTACCTCTTTGGGGCA+TGG - chr6_4:81536753-81536772 Msa0999480:CDS 55.0%
CCCATTTCCATGCCCCAAAG+AGG + chr6_4:81536763-81536782 None:intergenic 55.0%
! CCACATGGGCTGCAAACCAG+TGG + chr6_4:81534014-81534033 None:intergenic 60.0%
!! CCACTGGTTTGCAGCCCATG+TGG - chr6_4:81534011-81534030 Msa0999480:CDS 60.0%
GCCCGTGGCAGTTGAATGTC+AGG + chr6_4:81534247-81534266 None:intergenic 60.0%
ACATTCAACTGCCACGGGCG+AGG - chr6_4:81534248-81534267 Msa0999480:intron 60.0%
CATTCAACTGCCACGGGCGA+GGG - chr6_4:81534249-81534268 Msa0999480:intron 60.0%
ATTCAACTGCCACGGGCGAG+GGG - chr6_4:81534250-81534269 Msa0999480:intron 60.0%
GGGGATGGAAGAGAGACACG+CGG - chr6_4:81534271-81534290 Msa0999480:intron 60.0%
TTATGGGGGTGGCCACATGC+CGG - chr6_4:81536299-81536318 Msa0999480:intron 60.0%
TCCTTCCGAGATCCGGCATG+TGG + chr6_4:81536314-81536333 None:intergenic 60.0%
TAGTCCCGTCTGGTGTGGAG+TGG - chr6_4:81536355-81536374 Msa0999480:intron 60.0%
AGTCCCGTCTGGTGTGGAGT+GGG - chr6_4:81536356-81536375 Msa0999480:intron 60.0%
AAGACAGTGGCCAGGGCTTC+AGG - chr6_4:81536435-81536454 Msa0999480:intron 60.0%
TTCAACTGCCACGGGCGAGG+GGG - chr6_4:81534251-81534270 Msa0999480:intron 65.0%
GGTGGCCACATGCCGGATCT+CGG - chr6_4:81536306-81536325 Msa0999480:intron 65.0%
GCCACATGCCGGATCTCGGA+AGG - chr6_4:81536310-81536329 Msa0999480:intron 65.0%
CAGTGGCCAGGGCTTCAGGT+TGG - chr6_4:81536439-81536458 Msa0999480:intron 65.0%
CAACGGCCAACCTGAAGCCC+TGG + chr6_4:81536448-81536467 None:intergenic 65.0%
TCAACTGCCACGGGCGAGGG+GGG - chr6_4:81534252-81534271 Msa0999480:intron 70.0%
CTTCCATCCCCCCTCGCCCG+TGG + chr6_4:81534262-81534281 None:intergenic 75.0%
! CTGCCACGGGCGAGGGGGGA+TGG - chr6_4:81534256-81534275 Msa0999480:intron 80.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 81532075 81536981 81532075 ID=Msa0999480;Name=Msa0999480
chr6_4 mRNA 81532075 81536981 81532075 ID=Msa0999480-mRNA-1;Parent=Msa0999480;Name=Msa0999480-mRNA-1;_AED=0.05;_eAED=0.05;_QI=63|1|1|1|1|1|5|373|451
chr6_4 exon 81532075 81532877 81532075 ID=Msa0999480-mRNA-1:exon:15584;Parent=Msa0999480-mRNA-1
chr6_4 exon 81533438 81533721 81533438 ID=Msa0999480-mRNA-1:exon:15583;Parent=Msa0999480-mRNA-1
chr6_4 exon 81533838 81534108 81533838 ID=Msa0999480-mRNA-1:exon:15582;Parent=Msa0999480-mRNA-1
chr6_4 exon 81536443 81536480 81536443 ID=Msa0999480-mRNA-1:exon:15581;Parent=Msa0999480-mRNA-1
chr6_4 exon 81536586 81536981 81536586 ID=Msa0999480-mRNA-1:exon:15580;Parent=Msa0999480-mRNA-1
chr6_4 five_prime_UTR 81536919 81536981 81536919 ID=Msa0999480-mRNA-1:five_prime_utr;Parent=Msa0999480-mRNA-1
chr6_4 CDS 81536586 81536918 81536586 ID=Msa0999480-mRNA-1:cds;Parent=Msa0999480-mRNA-1
chr6_4 CDS 81536443 81536480 81536443 ID=Msa0999480-mRNA-1:cds;Parent=Msa0999480-mRNA-1
chr6_4 CDS 81533838 81534108 81533838 ID=Msa0999480-mRNA-1:cds;Parent=Msa0999480-mRNA-1
chr6_4 CDS 81533438 81533721 81533438 ID=Msa0999480-mRNA-1:cds;Parent=Msa0999480-mRNA-1
chr6_4 CDS 81532448 81532877 81532448 ID=Msa0999480-mRNA-1:cds;Parent=Msa0999480-mRNA-1
chr6_4 three_prime_UTR 81532075 81532447 81532075 ID=Msa0999480-mRNA-1:three_prime_utr;Parent=Msa0999480-mRNA-1
Gene Sequence

>Msa0999480

ATGGTGTTAACTTCAATTTCATCAATATCTTCACCTTCATCATCATCATCTTCATTCTTCTCTGATTCACCATCAACTTCCAAAGCTTTTCCTTCTTTTCTTGTTGGTTTTCCAAAACCACCCTTTTCAAATTCCACCCTCAAAATCAAAACTTGTTTTGCTTCATCGACTCAACAAGAAAATGGGTCACCAGAACAGTTTCTACAAAGCAATTCCATTGCAGATTTCATGAGGTTCAAGAAAGGGATTGATGGTTCTACTGGTTTGTTGCAGACTGCTGTTGTTAGATATAAGAAGAAGTTTCCTTGGTCTCTTTTGAAGCCTTTTTTTCAGGTTGATTTGATTTCAACAATTCATATAGCAGATGAAGAGTATTTTCTGGCCCTCCAGAAGGAGCTTGAGTCCTACGATTGTGTCCTTTATGAAATGGTAGCTAGCAAGGAAACTTTAGAGAATATGAGAAACCCTATGGCTAAAAAAAGGTTAAAAGGATCACAAACTAGAGGTTTTAACATTATTGGATGCATCCAAAGACAGATGGCTCAAATTCTCAGGCTTGATTTCCAATTAGATTGTCTCAATTACCAGTCTGAAAATTGGCAACATGCAGATCTTGATTATGAGACCTTCCAATTACTCCAGCAAGCAAAAGGTGAAAGCTTATTTTCTTTTGCAAAAGATATGACTCTTAGATCTACAAAGGCAATGTTGCAGCCTTCGATTCCGGAAGATCTTGATCCATGGAGATCCAAGCTTTTATGGGCTTCACGTGTACTTCCTATGCCGCTTGTTGGCCTTTTTCTCATCGGAAGCGTTTGTGCAAATGTGGGAAGTCCAGCATCAGAATATCCGGAAATAGAGGCGTTGTCAAGGCTTGATGTAAGTGCTGCTATGAAGGTCTTCCTTGCAAAGAGACTAACATCCGACTTGACACAAAATACGGCAGATGTGGAGGAGAAATCTGTTATAATCGGTGAGAGAAATCGAGTTGCAATCGAGAACCTCAAAAGAGCAATGGACAAGGGACAAAATAAGATTGCCATACTTTATGGGGGTGGCCACATGCCGGATCTCGGAAGGAGATTGAGGGAGGAGTTCGATTTAGTCCCGTCTGGTGTGGAGTGGGTAACAGCTTGGTCCATAAGGAAAAGGAAACTTGATACAAGTTCACTTCCGTTTCTGAAGACAGTGGCCAGGGCTTCAGGTTGGCCGTTGAACCGTTATCAGACATTGGCTTTGCTCATCTTTTCGTCAATCTTGGCGGTGGATCTGTGGTTTTGGGAGCTATTCTTCGGTACCACGGTGAATTGGGTCTCTGATGTTACCACAGAAATTCTTCGGTATGTTGGTAATTAA

Protein sequence

>Msa0999480

MVLTSISSISSPSSSSSSFFSDSPSTSKAFPSFLVGFPKPPFSNSTLKIKTCFASSTQQENGSPEQFLQSNSIADFMRFKKGIDGSTGLLQTAVVRYKKKFPWSLLKPFFQVDLISTIHIADEEYFLALQKELESYDCVLYEMVASKETLENMRNPMAKKRLKGSQTRGFNIIGCIQRQMAQILRLDFQLDCLNYQSENWQHADLDYETFQLLQQAKGESLFSFAKDMTLRSTKAMLQPSIPEDLDPWRSKLLWASRVLPMPLVGLFLIGSVCANVGSPASEYPEIEALSRLDVSAAMKVFLAKRLTSDLTQNTADVEEKSVIIGERNRVAIENLKRAMDKGQNKIAILYGGGHMPDLGRRLREEFDLVPSGVEWVTAWSIRKRKLDTSSLPFLKTVARASGWPLNRYQTLALLIFSSILAVDLWFWELFFGTTVNWVSDVTTEILRYVGN*