AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1071380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1071380 MtrunA17_Chr5g0395851 98.188 276 2 1 1 276 1 273 0.0 546
Msa1071380 MtrunA17_Chr3g0131571 47.619 63 24 2 181 241 56 111 8.58e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1071380 AT5G17170.1 77.500 240 48 4 37 276 38 271 4.07e-127 362
Msa1071380 AT5G17170.2 73.292 161 41 2 36 196 37 195 1.86e-74 227
Msa1071380 AT5G51010.1 34.545 110 42 4 182 273 52 149 6.90e-11 59.7

Find 113 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGACTTGTGGCTGGTTT+AGG 0.164794 7_2:-67889470 Msa1071380:CDS
ACCTGGTCATCAAAAGATTT+TGG 0.172641 7_2:+67889944 None:intergenic
CCTCCAATTGGAGTTATTAT+TGG 0.179719 7_2:-67889488 Msa1071380:CDS
AATTATCACAGTTAGTTTCT+AGG 0.182886 7_2:+67889257 None:intergenic
TTGGACTTGTGGCTGGTTTA+GGG 0.187713 7_2:-67889469 Msa1071380:CDS
CTTCTTTGGTGCTTGACATT+GGG 0.228557 7_2:+67889565 None:intergenic
GAAGCCAAAAGGGGTGTTTC+AGG 0.237048 7_2:-67891535 Msa1071380:CDS
CGAGGAGGAGCAGGACGTTT+TGG 0.239182 7_2:+67890193 None:intergenic
CAACACCGCCACCATTCTTT+TGG 0.291572 7_2:+67891380 None:intergenic
TCTAACACTCACTCTTCTAT+TGG 0.292576 7_2:+67889113 None:intergenic
CTATATACTAGCAGTTTCTT+TGG 0.295714 7_2:-67891034 Msa1071380:CDS
AACAGATCACACAATTAAAA+AGG 0.303925 7_2:-67892021 Msa1071380:five_prime_UTR
GTTTCTTTGGAGATGAATTA+TGG 0.304420 7_2:-67891021 Msa1071380:CDS
TACTCAGCAAACCTCTTCTT+TGG 0.321989 7_2:+67889551 None:intergenic
TTCAAAAGAATCAGTTGTTT+TGG 0.328968 7_2:-67891950 Msa1071380:five_prime_UTR
GGATCCTGAAACACCCCTTT+TGG 0.340292 7_2:+67891531 None:intergenic
GTCCTGCTCCTCCTCGCTTC+GGG 0.350568 7_2:-67890186 Msa1071380:CDS
CGTCCTGCTCCTCCTCGCTT+CGG 0.368149 7_2:-67890187 Msa1071380:CDS
TATCTTCTTTAGGCTGTTGA+AGG 0.389713 7_2:-67891103 Msa1071380:intron
GGTGGAGGGTTGCCTCCAAT+TGG 0.394086 7_2:-67889500 Msa1071380:CDS
AGCTTAGTTGAGTTGGTGTT+AGG 0.397535 7_2:+67892053 None:intergenic
GTGCTGATGTAGATGTTAAA+AGG 0.409204 7_2:-67890219 Msa1071380:CDS
CTCACTTCATGAAGCCAAAA+GGG 0.416237 7_2:-67891545 Msa1071380:CDS
TCTTCTTTGGTGCTTGACAT+TGG 0.416965 7_2:+67889564 None:intergenic
CTAACACTCACTCTTCTATT+GGG 0.422967 7_2:+67889114 None:intergenic
ATTCCAAGGTTGGACAACTT+TGG 0.424659 7_2:+67889370 None:intergenic
GTGGCTGGTTTAGGGGCTGT+TGG 0.432164 7_2:-67889461 Msa1071380:CDS
GAATGTTTCTAGCATTTCTC+AGG 0.435034 7_2:-67889074 None:intergenic
ACCATGTCAGCTATGGTTGC+AGG 0.435247 7_2:-67891896 Msa1071380:CDS
AGTCCAATAATAACTCCAAT+TGG 0.436833 7_2:+67889485 None:intergenic
GCAAGAGCAGGGTTAAAGTC+AGG 0.440054 7_2:-67891067 Msa1071380:CDS
GTTATTATTGGACTTGTGGC+TGG 0.444557 7_2:-67889476 Msa1071380:CDS
CTCCCGAAGCGAGGAGGAGC+AGG 0.447605 7_2:+67890184 None:intergenic
CTGTCTACTTTGTTGTCAGC+AGG 0.450428 7_2:-67890946 Msa1071380:intron
GAGATCACTGCAAGAACTGC+TGG 0.452185 7_2:-67891457 Msa1071380:CDS
CACAAAAGAACCTCACCATC+TGG 0.455682 7_2:+67892145 None:intergenic
GGAGGGAATGCAGCAAGAGC+AGG 0.457313 7_2:-67891079 Msa1071380:CDS
GTGGGACTCACCACTTTATG+TGG 0.458423 7_2:+67889147 None:intergenic
CTTTAGGCTGTTGAAGGTGG+AGG 0.458505 7_2:-67891097 Msa1071380:intron
TTCTTTGGTGCTTGACATTG+GGG 0.463539 7_2:+67889566 None:intergenic
CTTCTTTAGGCTGTTGAAGG+TGG 0.466334 7_2:-67891100 Msa1071380:intron
ATTGCATATGTGCAAATTGA+AGG 0.466677 7_2:-67889326 Msa1071380:three_prime_UTR
TCTCACTTCATGAAGCCAAA+AGG 0.467074 7_2:-67891546 Msa1071380:CDS
GACACTCACTCCTCCATGTC+AGG 0.476168 7_2:-67891804 Msa1071380:intron
AAGGCAAATGTGAGTAGCTC+TGG 0.479447 7_2:+67889991 None:intergenic
AAGCCACTTGGTCTCACCTT+AGG 0.480037 7_2:-67891403 Msa1071380:CDS
GTTAACACAGGAAGAGCTAT+TGG 0.480695 7_2:-67889524 Msa1071380:CDS
AATTTGCACATATGCAATCA+AGG 0.485372 7_2:+67889331 None:intergenic
ACAACAAAGTAGACAGAGTC+AGG 0.485537 7_2:+67890953 None:intergenic
AGCCACAAGCTTAGTTGAGT+TGG 0.485667 7_2:+67892046 None:intergenic
TGAGATACAAATTCCAAGGT+TGG 0.488440 7_2:+67889360 None:intergenic
CTCAAGTCTCTTTCTAGCAA+TGG 0.494877 7_2:+67891477 None:intergenic
AAAATGAATCCCACATAAAG+TGG 0.495336 7_2:-67889157 Msa1071380:three_prime_UTR
ATGGTTCCTTGTGGAAAGAA+AGG 0.502076 7_2:+67891914 None:intergenic
AAAATTGACTGAGACTCAAA+AGG 0.506048 7_2:-67890161 Msa1071380:CDS
GGTGTTTCAGGATCCTTCCT+AGG 0.507560 7_2:-67891523 Msa1071380:CDS
AACTGCTAGTATATAGAACT+TGG 0.513842 7_2:+67891041 None:intergenic
TGGTGGCGGTGTTGTTATAA+CGG 0.514700 7_2:-67891371 Msa1071380:intron
GGAAGAGCTATTGGTGGTGG+AGG 0.514930 7_2:-67889515 Msa1071380:CDS
ATTTCACTCGATAAGAGAAT+AGG 0.516720 7_2:+67889194 None:intergenic
TGGACTTGTGGCTGGTTTAG+GGG 0.521175 7_2:-67889468 Msa1071380:CDS
ACTCCAAAGTTGTCCAACCT+TGG 0.529497 7_2:-67889373 Msa1071380:three_prime_UTR
GTGAATCCAAGCTTATCTGC+TGG 0.535393 7_2:+67890998 None:intergenic
TTTAGGCTGTTGAAGGTGGA+GGG 0.538963 7_2:-67891096 Msa1071380:intron
TTATGGCCAGCAGATAAGCT+TGG 0.539708 7_2:-67891004 Msa1071380:CDS
CTGCAGAAAACATCTTTGCT+AGG 0.543050 7_2:-67891571 Msa1071380:intron
CCAATAATAACTCCAATTGG+AGG 0.544692 7_2:+67889488 None:intergenic
GAAACTAACTGTGATAATTG+AGG 0.547137 7_2:-67889253 Msa1071380:three_prime_UTR
ACAGGAAGAGCTATTGGTGG+TGG 0.551544 7_2:-67889518 Msa1071380:CDS
TTTCTGAGATACAAATTCCA+AGG 0.554244 7_2:+67889356 None:intergenic
TTCCTTCCTTTCTTTCCACA+AGG 0.557681 7_2:-67891920 Msa1071380:five_prime_UTR
ACAAGGAACCATGTCAGCTA+TGG 0.558535 7_2:-67891903 Msa1071380:exon
TGGAGTTATTATTGGACTTG+TGG 0.561374 7_2:-67889480 Msa1071380:CDS
TTCCTTGTGGAAAGAAAGGA+AGG 0.563057 7_2:+67891918 None:intergenic
TTCAAAGACAATTGAAGCTG+AGG 0.563353 7_2:-67891431 Msa1071380:CDS
TGGGGACAACTGTATGTGTC+CGG 0.563574 7_2:+67889584 None:intergenic
CCTTGTGGTGAAAGTGGCAG+AGG 0.564639 7_2:+67891868 None:intergenic
CGGCTTGAGGCCAGATGGTG+AGG 0.565975 7_2:-67892155 None:intergenic
CAAGAGCAGGGTTAAAGTCA+GGG 0.567341 7_2:-67891066 Msa1071380:CDS
CTCACCTTAGGCCAAAAGAA+TGG 0.568349 7_2:-67891391 Msa1071380:CDS
GCTGAGGTTGACAAGCCACT+TGG 0.570324 7_2:-67891415 Msa1071380:CDS
AACGGTACCTGTACCTGACA+TGG 0.581994 7_2:+67891791 None:intergenic
GTTACTCCTTGTGGTGAAAG+TGG 0.585891 7_2:+67891862 None:intergenic
TTCCTAGGTGACAACAAAAG+TGG 0.586607 7_2:-67891508 Msa1071380:CDS
ACCTGCAACCATAGCTGACA+TGG 0.586903 7_2:+67891895 None:intergenic
AATGTCAAGCACCAAAGAAG+AGG 0.589836 7_2:-67889562 Msa1071380:CDS
GATGGAGTGGTTACTCCTTG+TGG 0.593369 7_2:+67891853 None:intergenic
CACCAACTCAACTAAGCTTG+TGG 0.596840 7_2:-67892048 Msa1071380:five_prime_UTR
AAGTCTCTTTCTAGCAATGG+AGG 0.597338 7_2:+67891480 None:intergenic
AAGAGCAGGGTTAAAGTCAG+GGG 0.598127 7_2:-67891065 Msa1071380:CDS
ATGTGTATAAAGCATGCAAG+AGG 0.599952 7_2:+67891977 None:intergenic
TGGGACTCACCACTTTATGT+GGG 0.604299 7_2:+67889148 None:intergenic
TGGCCTAAGGTGAGACCAAG+TGG 0.607786 7_2:+67891400 None:intergenic
TGTGGTGAAAGTGGCAGAGG+AGG 0.609801 7_2:+67891871 None:intergenic
AGTATATGTATCCACAGTCA+AGG 0.610259 7_2:+67889972 None:intergenic
ACATGGAGGAGTGAGTGTCT+TGG 0.612341 7_2:+67891808 None:intergenic
GAGGGAATGCAGCAAGAGCA+GGG 0.612440 7_2:-67891078 Msa1071380:CDS
AAGGTTGGACAACTTTGGAG+TGG 0.618969 7_2:+67889375 None:intergenic
GAAGAGCTATTGGTGGTGGA+GGG 0.622209 7_2:-67889514 Msa1071380:CDS
GCTGAGTATGATGTTAACAC+AGG 0.623493 7_2:-67889536 Msa1071380:CDS
TTAGGCCAAAAGAATGGTGG+CGG 0.624691 7_2:-67891385 Msa1071380:CDS
ACTCACATTTGCCTTGACTG+TGG 0.627650 7_2:-67889983 Msa1071380:CDS
ATAGCTGACATGGTTCCTTG+TGG 0.631401 7_2:+67891905 None:intergenic
CCTCTGCCACTTTCACCACA+AGG 0.635741 7_2:-67891868 Msa1071380:CDS
TCACTTCATGAAGCCAAAAG+GGG 0.637786 7_2:-67891544 Msa1071380:CDS
TAGAACGGCTTGAGGCCAGA+TGG 0.640150 7_2:-67892160 None:intergenic
GGAGGAGTGAGTGTCTTGGA+AGG 0.640900 7_2:+67891812 None:intergenic
AACACAGGAAGAGCTATTGG+TGG 0.646702 7_2:-67889521 Msa1071380:CDS
ACCTTAGGCCAAAAGAATGG+TGG 0.660294 7_2:-67891388 Msa1071380:CDS
CTATTGGGTGAAAACCATGT+GGG 0.660941 7_2:+67889129 None:intergenic
TCTATTGGGTGAAAACCATG+TGG 0.671909 7_2:+67889128 None:intergenic
ATAAAGTGGTGAGTCCCACA+TGG 0.673249 7_2:-67889143 Msa1071380:three_prime_UTR
GGTACCTGTACCTGACATGG+AGG 0.738019 7_2:+67891794 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAAAAATTAAAAAAAGTA+GGG - chr7_2:67890495-67890514 Msa1071380:intron 10.0%
!! AAATTGAATAAAATTTATGT+AGG - chr7_2:67890521-67890540 Msa1071380:intron 10.0%
!! AATTGAATAAAATTTATGTA+GGG - chr7_2:67890522-67890541 Msa1071380:intron 10.0%
!! TTAAAAAAAATATACATGTT+GGG + chr7_2:67891408-67891427 None:intergenic 10.0%
!! TTTAAAAAAAATATACATGT+TGG + chr7_2:67891409-67891428 None:intergenic 10.0%
!!! AAGAAAGATAATATGTTTTT+GGG + chr7_2:67889120-67889139 None:intergenic 15.0%
!!! AAAGAAAGATAATATGTTTT+TGG + chr7_2:67889121-67889140 None:intergenic 15.0%
!!! GACTAAATTTGAAATTTTAT+TGG + chr7_2:67890408-67890427 None:intergenic 15.0%
!! CTGTAAAAATTAAAAAAAGT+AGG - chr7_2:67890494-67890513 Msa1071380:intron 15.0%
!! AATAAGATATAGAAAATTGA+TGG - chr7_2:67890698-67890717 Msa1071380:intron 15.0%
!!! TTTTATATATATATGTGTGA+TGG + chr7_2:67891310-67891329 None:intergenic 15.0%
!!! AATGACAACATTGATTTAAT+GGG + chr7_2:67889898-67889917 None:intergenic 20.0%
!!! TTGTTCAATTTGATTTCATA+AGG - chr7_2:67890440-67890459 Msa1071380:intron 20.0%
!!! TTTTGTAGCAATAACAATAA+GGG + chr7_2:67890604-67890623 None:intergenic 20.0%
!!! ATTTTGTAGCAATAACAATA+AGG + chr7_2:67890605-67890624 None:intergenic 20.0%
!! AACCATTCAATTATGTAAAA+TGG + chr7_2:67891182-67891201 None:intergenic 20.0%
!! ATATAAAAGATAAAGTCTCT+TGG + chr7_2:67891352-67891371 None:intergenic 20.0%
!!! AGATGATTTTAGATTAAAGT+TGG - chr7_2:67891565-67891584 Msa1071380:CDS 20.0%
!!! AAAGATAATATGTTTTTGGG+TGG + chr7_2:67889117-67889136 None:intergenic 25.0%
! AACAGATCACACAATTAAAA+AGG - chr7_2:67889203-67889222 Msa1071380:three_prime_UTR 25.0%
!! TTCAAAAGAATCAGTTGTTT+TGG - chr7_2:67889274-67889293 Msa1071380:three_prime_UTR 25.0%
! TAATCATGCAAAGAAAAGAA+CGG + chr7_2:67889454-67889473 None:intergenic 25.0%
!! TTTTCTTTGCATGATTACTT+CGG - chr7_2:67889457-67889476 Msa1071380:CDS 25.0%
! ATCATTTGAATTCAACTAGT+TGG - chr7_2:67889569-67889588 Msa1071380:CDS 25.0%
!!! CAATGACAACATTGATTTAA+TGG + chr7_2:67889899-67889918 None:intergenic 25.0%
! CATTAAATCAATGTTGTCAT+TGG - chr7_2:67889897-67889916 Msa1071380:intron 25.0%
! ATTTCACCACTATATATACA+AGG + chr7_2:67890662-67890681 None:intergenic 25.0%
! TTGTATATATAGTGGTGAAA+TGG - chr7_2:67890661-67890680 Msa1071380:intron 25.0%
! TGTATATATAGTGGTGAAAT+GGG - chr7_2:67890662-67890681 Msa1071380:intron 25.0%
! TGGTAAGACTAAAATAAGTT+CGG - chr7_2:67890718-67890737 Msa1071380:intron 25.0%
! AAGTAACTGATAAACAGAAT+AGG + chr7_2:67890928-67890947 None:intergenic 25.0%
! ACAAAAACATGAAAATAGTC+AGG + chr7_2:67890973-67890992 None:intergenic 25.0%
!!! TTCATGTTTTTGTTATGAAG+AGG - chr7_2:67890980-67890999 Msa1071380:CDS 25.0%
! GATGACAAATAAATACTACT+AGG + chr7_2:67891145-67891164 None:intergenic 25.0%
!! GTCCATTTTACATAATTGAA+TGG - chr7_2:67891177-67891196 Msa1071380:intron 25.0%
! TAAAAATGTCTGACATGTAT+TGG - chr7_2:67891425-67891444 Msa1071380:CDS 25.0%
!! AATTATCACAGTTAGTTTCT+AGG + chr7_2:67891970-67891989 None:intergenic 25.0%
!! ATTCATTTTCAATGTGTGTT+AGG + chr7_2:67892056-67892075 None:intergenic 25.0%
AATTCAACTAGTTGGTTAGT+TGG - chr7_2:67889577-67889596 Msa1071380:CDS 30.0%
ATCAACCTGAAATGAAATGT+CGG + chr7_2:67889940-67889959 None:intergenic 30.0%
TGAAATGTAACCATATGTGT+CGG + chr7_2:67889988-67890007 None:intergenic 30.0%
AGATGCGTATTATCTTCTTT+AGG - chr7_2:67890111-67890130 Msa1071380:intron 30.0%
AACTGCTAGTATATAGAACT+TGG + chr7_2:67890186-67890205 None:intergenic 30.0%
CTATATACTAGCAGTTTCTT+TGG - chr7_2:67890190-67890209 Msa1071380:CDS 30.0%
! GTTTCTTTGGAGATGAATTA+TGG - chr7_2:67890203-67890222 Msa1071380:CDS 30.0%
GAACAAAGTTTAGTAGCAAA+AGG + chr7_2:67890314-67890333 None:intergenic 30.0%
AATGGATGCAATTAAGGAAA+TGG + chr7_2:67890336-67890355 None:intergenic 30.0%
!!! TGACATAGGTTAGTTTTTGT+TGG - chr7_2:67890363-67890382 Msa1071380:intron 30.0%
!!! GACATAGGTTAGTTTTTGTT+GGG - chr7_2:67890364-67890383 Msa1071380:intron 30.0%
!!! TGAAAAGGTCGTAGTTTTAT+AGG - chr7_2:67890552-67890571 Msa1071380:intron 30.0%
!!! GAAAAGGTCGTAGTTTTATA+GGG - chr7_2:67890553-67890572 Msa1071380:intron 30.0%
ACACTACCTTGTATATATAG+TGG - chr7_2:67890653-67890672 Msa1071380:intron 30.0%
!!! TTTTTTCTCTCTCTTTCACA+AGG + chr7_2:67890798-67890817 None:intergenic 30.0%
!! ATGTTTTTGTTATGAAGAGG+TGG - chr7_2:67890983-67891002 Msa1071380:CDS 30.0%
AAAATTGACTGAGACTCAAA+AGG - chr7_2:67891063-67891082 Msa1071380:CDS 30.0%
! GCAAGAATCGTTATTCATTT+TGG - chr7_2:67891085-67891104 Msa1071380:CDS 30.0%
!! GTCTCTTGGCAATTATTTTT+AGG + chr7_2:67891338-67891357 None:intergenic 30.0%
AAAGTTGGATTATCAACATC+TGG - chr7_2:67891580-67891599 Msa1071380:intron 30.0%
ATTATTTATGTCATTGCAGC+CGG - chr7_2:67891621-67891640 Msa1071380:intron 30.0%
AGTCCAATAATAACTCCAAT+TGG + chr7_2:67891742-67891761 None:intergenic 30.0%
!! TTTCTGAGATACAAATTCCA+AGG + chr7_2:67891871-67891890 None:intergenic 30.0%
AATTTGCACATATGCAATCA+AGG + chr7_2:67891896-67891915 None:intergenic 30.0%
ATTGCATATGTGCAAATTGA+AGG - chr7_2:67891898-67891917 Msa1071380:exon 30.0%
GAAACTAACTGTGATAATTG+AGG - chr7_2:67891971-67891990 Msa1071380:five_prime_UTR 30.0%
ATTTCACTCGATAAGAGAAT+AGG + chr7_2:67892033-67892052 None:intergenic 30.0%
AAAATGAATCCCACATAAAG+TGG - chr7_2:67892067-67892086 Msa1071380:five_prime_UTR 30.0%
!!! CATGCAAGAGGAGTTTTTTT+GGG + chr7_2:67889238-67889257 None:intergenic 35.0%
ATGTGTATAAAGCATGCAAG+AGG + chr7_2:67889250-67889269 None:intergenic 35.0%
!! TCTGATGTGAGTGTTTTTGA+TGG + chr7_2:67889392-67889411 None:intergenic 35.0%
TTCAAAGACAATTGAAGCTG+AGG - chr7_2:67889793-67889812 Msa1071380:intron 35.0%
!! GACATTTCATTTCAGGTTGA+TGG - chr7_2:67889939-67889958 Msa1071380:intron 35.0%
TATCTTCTTTAGGCTGTTGA+AGG - chr7_2:67890121-67890140 Msa1071380:intron 35.0%
CAACAGAATGGATGCAATTA+AGG + chr7_2:67890342-67890361 None:intergenic 35.0%
ATTTCATAAGGACTAAACGC+AGG - chr7_2:67890452-67890471 Msa1071380:intron 35.0%
ATGTAGGGACTAAACTGAAA+AGG - chr7_2:67890537-67890556 Msa1071380:intron 35.0%
TATACAAGGTAGTGTTGCAA+GGG + chr7_2:67890648-67890667 None:intergenic 35.0%
ATATACAAGGTAGTGTTGCA+AGG + chr7_2:67890649-67890668 None:intergenic 35.0%
! TGACATAGAATTGGTGACAT+TGG - chr7_2:67890753-67890772 Msa1071380:intron 35.0%
GTCAATCACAATGTTACAAG+TGG + chr7_2:67890824-67890843 None:intergenic 35.0%
! TGACATAGAATTGGTGACAT+TGG + chr7_2:67890753-67890772 None:intergenic 35.0%
GATTGCATACTGAACTTACT+GGG + chr7_2:67890869-67890888 None:intergenic 35.0%
AGATTGCATACTGAACTTAC+TGG + chr7_2:67890870-67890889 None:intergenic 35.0%
! TGTGTATGAAGAGTATACTG+TGG - chr7_2:67890900-67890919 Msa1071380:intron 35.0%
! GTGCTGATGTAGATGTTAAA+AGG - chr7_2:67891005-67891024 Msa1071380:CDS 35.0%
AGTATATGTATCCACAGTCA+AGG + chr7_2:67891255-67891274 None:intergenic 35.0%
!! ACCAAAATCTTTTGATGACC+AGG - chr7_2:67891279-67891298 Msa1071380:intron 35.0%
! ACCTGGTCATCAAAAGATTT+TGG + chr7_2:67891283-67891302 None:intergenic 35.0%
CCAATAATAACTCCAATTGG+AGG + chr7_2:67891739-67891758 None:intergenic 35.0%
CCTCCAATTGGAGTTATTAT+TGG - chr7_2:67891736-67891755 Msa1071380:intron 35.0%
TGGAGTTATTATTGGACTTG+TGG - chr7_2:67891744-67891763 Msa1071380:intron 35.0%
!! GTTGGAGCTTTACTTGTTTT+TGG - chr7_2:67891781-67891800 Msa1071380:intron 35.0%
TGAGATACAAATTCCAAGGT+TGG + chr7_2:67891867-67891886 None:intergenic 35.0%
CTAACACTCACTCTTCTATT+GGG + chr7_2:67892113-67892132 None:intergenic 35.0%
TCTAACACTCACTCTTCTAT+TGG + chr7_2:67892114-67892133 None:intergenic 35.0%
!! AGCTTAGTTGAGTTGGTGTT+AGG + chr7_2:67889174-67889193 None:intergenic 40.0%
!!! GCATGCAAGAGGAGTTTTTT+TGG + chr7_2:67889239-67889258 None:intergenic 40.0%
TTCCTTCCTTTCTTTCCACA+AGG - chr7_2:67889304-67889323 Msa1071380:three_prime_UTR 40.0%
TTCCTTGTGGAAAGAAAGGA+AGG + chr7_2:67889309-67889328 None:intergenic 40.0%
ATGGTTCCTTGTGGAAAGAA+AGG + chr7_2:67889313-67889332 None:intergenic 40.0%
!! TGTGAGTGTTTTTGATGGAG+TGG + chr7_2:67889387-67889406 None:intergenic 40.0%
CTTTGCATGATTACTTCGGT+CGG - chr7_2:67889461-67889480 Msa1071380:CDS 40.0%
CTGCAGAAAACATCTTTGCT+AGG - chr7_2:67889653-67889672 Msa1071380:intron 40.0%
!!! TTTTGGCTTCATGAAGTGAG+AGG + chr7_2:67889679-67889698 None:intergenic 40.0%
TCTCACTTCATGAAGCCAAA+AGG - chr7_2:67889678-67889697 Msa1071380:intron 40.0%
CTCACTTCATGAAGCCAAAA+GGG - chr7_2:67889679-67889698 Msa1071380:intron 40.0%
TCACTTCATGAAGCCAAAAG+GGG - chr7_2:67889680-67889699 Msa1071380:intron 40.0%
!! ACTTTTGTTGTCACCTAGGA+AGG + chr7_2:67889717-67889736 None:intergenic 40.0%
TTCCTAGGTGACAACAAAAG+TGG - chr7_2:67889716-67889735 Msa1071380:intron 40.0%
!! AACCACTTTTGTTGTCACCT+AGG + chr7_2:67889721-67889740 None:intergenic 40.0%
! AAGTCTCTTTCTAGCAATGG+AGG + chr7_2:67889747-67889766 None:intergenic 40.0%
! CTCAAGTCTCTTTCTAGCAA+TGG + chr7_2:67889750-67889769 None:intergenic 40.0%
!! TTTCAGGTTGATGGCATGTT+TGG - chr7_2:67889948-67889967 Msa1071380:CDS 40.0%
!! TCGGTGCTTTCTGGTTTAAA+GGG - chr7_2:67890066-67890085 Msa1071380:intron 40.0%
ACAACAAAGTAGACAGAGTC+AGG + chr7_2:67890274-67890293 None:intergenic 40.0%
ATCCATTCTGTTGCTGACAT+AGG - chr7_2:67890349-67890368 Msa1071380:intron 40.0%
AACCTATGTCAGCAACAGAA+TGG + chr7_2:67890354-67890373 None:intergenic 40.0%
ATACAAGGTAGTGTTGCAAG+GGG + chr7_2:67890647-67890666 None:intergenic 40.0%
GCACTTGAGTGACATAGAAT+TGG - chr7_2:67890744-67890763 Msa1071380:intron 40.0%
AAGGATCGTGACATTGTGAT+TGG + chr7_2:67890779-67890798 None:intergenic 40.0%
CTTACTGGGTGACATAGAAT+TGG + chr7_2:67890855-67890874 None:intergenic 40.0%
!! ATATGTGTGATGGACTTACC+TGG + chr7_2:67891300-67891319 None:intergenic 40.0%
! CATCTGATTGAAAGCATGTC+TGG - chr7_2:67891380-67891399 Msa1071380:CDS 40.0%
! TGTCTGACATGTATTGGTGT+CGG - chr7_2:67891431-67891450 Msa1071380:CDS 40.0%
TTGAATGTAACCACGTTCGT+TGG + chr7_2:67891471-67891490 None:intergenic 40.0%
ATTTCTACATGTGTCGTACC+TGG - chr7_2:67891510-67891529 Msa1071380:CDS 40.0%
!! TTCTTTGGTGCTTGACATTG+GGG + chr7_2:67891661-67891680 None:intergenic 40.0%
!! CTTCTTTGGTGCTTGACATT+GGG + chr7_2:67891662-67891681 None:intergenic 40.0%
!! TCTTCTTTGGTGCTTGACAT+TGG + chr7_2:67891663-67891682 None:intergenic 40.0%
AATGTCAAGCACCAAAGAAG+AGG - chr7_2:67891662-67891681 Msa1071380:intron 40.0%
TACTCAGCAAACCTCTTCTT+TGG + chr7_2:67891676-67891695 None:intergenic 40.0%
GCTGAGTATGATGTTAACAC+AGG - chr7_2:67891688-67891707 Msa1071380:intron 40.0%
GTTAACACAGGAAGAGCTAT+TGG - chr7_2:67891700-67891719 Msa1071380:intron 40.0%
GTTATTATTGGACTTGTGGC+TGG - chr7_2:67891748-67891767 Msa1071380:intron 40.0%
ATTCCAAGGTTGGACAACTT+TGG + chr7_2:67891857-67891876 None:intergenic 40.0%
CTATTGGGTGAAAACCATGT+GGG + chr7_2:67892098-67892117 None:intergenic 40.0%
TCTATTGGGTGAAAACCATG+TGG + chr7_2:67892099-67892118 None:intergenic 40.0%
CACAAAAGAACCTCACCATC+TGG + chr7_2:67889082-67889101 None:intergenic 45.0%
CACCAACTCAACTAAGCTTG+TGG - chr7_2:67889176-67889195 Msa1071380:three_prime_UTR 45.0%
AGCCACAAGCTTAGTTGAGT+TGG + chr7_2:67889181-67889200 None:intergenic 45.0%
ATAGCTGACATGGTTCCTTG+TGG + chr7_2:67889322-67889341 None:intergenic 45.0%
ACAAGGAACCATGTCAGCTA+TGG - chr7_2:67889321-67889340 Msa1071380:three_prime_UTR 45.0%
GTTACTCCTTGTGGTGAAAG+TGG + chr7_2:67889365-67889384 None:intergenic 45.0%
CTCACCTTAGGCCAAAAGAA+TGG - chr7_2:67889833-67889852 Msa1071380:intron 45.0%
ACCTTAGGCCAAAAGAATGG+TGG - chr7_2:67889836-67889855 Msa1071380:intron 45.0%
TTAGGCCAAAAGAATGGTGG+CGG - chr7_2:67889839-67889858 Msa1071380:intron 45.0%
!! TGGTGGCGGTGTTGTTATAA+CGG - chr7_2:67889853-67889872 Msa1071380:intron 45.0%
!! CAGCACCGACATTTCATTTC+AGG - chr7_2:67889932-67889951 Msa1071380:intron 45.0%
GTTGTGTCCTATGTCTGTGT+CGG - chr7_2:67890047-67890066 Msa1071380:intron 45.0%
!! GTCGGTGCTTTCTGGTTTAA+AGG - chr7_2:67890065-67890084 Msa1071380:intron 45.0%
CTTCTTTAGGCTGTTGAAGG+TGG - chr7_2:67890124-67890143 Msa1071380:intron 45.0%
TTTAGGCTGTTGAAGGTGGA+GGG - chr7_2:67890128-67890147 Msa1071380:intron 45.0%
CAAGAGCAGGGTTAAAGTCA+GGG - chr7_2:67890158-67890177 Msa1071380:CDS 45.0%
AAGAGCAGGGTTAAAGTCAG+GGG - chr7_2:67890159-67890178 Msa1071380:CDS 45.0%
TTATGGCCAGCAGATAAGCT+TGG - chr7_2:67890220-67890239 Msa1071380:CDS 45.0%
GTGAATCCAAGCTTATCTGC+TGG + chr7_2:67890229-67890248 None:intergenic 45.0%
! CTGTCTACTTTGTTGTCAGC+AGG - chr7_2:67890278-67890297 Msa1071380:intron 45.0%
AAGGCAAATGTGAGTAGCTC+TGG + chr7_2:67891236-67891255 None:intergenic 45.0%
ACTCACATTTGCCTTGACTG+TGG - chr7_2:67891241-67891260 Msa1071380:intron 45.0%
CACGTTCGTTGGTATCATGT+TGG + chr7_2:67891460-67891479 None:intergenic 45.0%
CAACATGATACCAACGAACG+TGG - chr7_2:67891458-67891477 Msa1071380:CDS 45.0%
AACACAGGAAGAGCTATTGG+TGG - chr7_2:67891703-67891722 Msa1071380:intron 45.0%
!! ATTGGACTTGTGGCTGGTTT+AGG - chr7_2:67891754-67891773 Msa1071380:intron 45.0%
!! TTGGACTTGTGGCTGGTTTA+GGG - chr7_2:67891755-67891774 Msa1071380:intron 45.0%
! AAGGTTGGACAACTTTGGAG+TGG + chr7_2:67891852-67891871 None:intergenic 45.0%
ACTCCAAAGTTGTCCAACCT+TGG - chr7_2:67891851-67891870 Msa1071380:CDS 45.0%
TGGGACTCACCACTTTATGT+GGG + chr7_2:67892079-67892098 None:intergenic 45.0%
ATAAAGTGGTGAGTCCCACA+TGG - chr7_2:67892081-67892100 Msa1071380:five_prime_UTR 45.0%
ACCATGTCAGCTATGGTTGC+AGG - chr7_2:67889328-67889347 Msa1071380:three_prime_UTR 50.0%
ACCTGCAACCATAGCTGACA+TGG + chr7_2:67889332-67889351 None:intergenic 50.0%
GATGGAGTGGTTACTCCTTG+TGG + chr7_2:67889374-67889393 None:intergenic 50.0%
ACATGGAGGAGTGAGTGTCT+TGG + chr7_2:67889419-67889438 None:intergenic 50.0%
AACGGTACCTGTACCTGACA+TGG + chr7_2:67889436-67889455 None:intergenic 50.0%
!! GAAGCCAAAAGGGGTGTTTC+AGG - chr7_2:67889689-67889708 Msa1071380:intron 50.0%
! GGATCCTGAAACACCCCTTT+TGG + chr7_2:67889696-67889715 None:intergenic 50.0%
GGTGTTTCAGGATCCTTCCT+AGG - chr7_2:67889701-67889720 Msa1071380:intron 50.0%
GAGATCACTGCAAGAACTGC+TGG - chr7_2:67889767-67889786 Msa1071380:intron 50.0%
AAGCCACTTGGTCTCACCTT+AGG - chr7_2:67889821-67889840 Msa1071380:intron 50.0%
! GCCACCATTCTTTTGGCCTA+AGG + chr7_2:67889840-67889859 None:intergenic 50.0%
! CAACACCGCCACCATTCTTT+TGG + chr7_2:67889847-67889866 None:intergenic 50.0%
TGACACGACACCGACACATA+TGG - chr7_2:67889975-67889994 Msa1071380:CDS 50.0%
!! GAAAGCACCGACACAGACAT+AGG + chr7_2:67890057-67890076 None:intergenic 50.0%
! ATGTCTGTGTCGGTGCTTTC+TGG - chr7_2:67890057-67890076 Msa1071380:intron 50.0%
CTTTAGGCTGTTGAAGGTGG+AGG - chr7_2:67890127-67890146 Msa1071380:intron 50.0%
GCAAGAGCAGGGTTAAAGTC+AGG - chr7_2:67890157-67890176 Msa1071380:CDS 50.0%
! AATTTTCTCCCGAAGCGAGG+AGG + chr7_2:67891049-67891068 None:intergenic 50.0%
! GTCAATTTTCTCCCGAAGCG+AGG + chr7_2:67891052-67891071 None:intergenic 50.0%
! GCATGGTGGTAGTGTACACT+TGG + chr7_2:67891210-67891229 None:intergenic 50.0%
AGTGTACACTACCACCATGC+AGG - chr7_2:67891210-67891229 Msa1071380:intron 50.0%
! TGTCGTACCTGGTTTGTGTG+TGG - chr7_2:67891521-67891540 Msa1071380:CDS 50.0%
TGGGGACAACTGTATGTGTC+CGG + chr7_2:67891643-67891662 None:intergenic 50.0%
ACAGGAAGAGCTATTGGTGG+TGG - chr7_2:67891706-67891725 Msa1071380:intron 50.0%
!! GAAGAGCTATTGGTGGTGGA+GGG - chr7_2:67891710-67891729 Msa1071380:intron 50.0%
!! TGGACTTGTGGCTGGTTTAG+GGG - chr7_2:67891756-67891775 Msa1071380:intron 50.0%
GTGGGACTCACCACTTTATG+TGG + chr7_2:67892080-67892099 None:intergenic 50.0%
TGTGGTGAAAGTGGCAGAGG+AGG + chr7_2:67889356-67889375 None:intergenic 55.0%
CCTTGTGGTGAAAGTGGCAG+AGG + chr7_2:67889359-67889378 None:intergenic 55.0%
!! CCTCTGCCACTTTCACCACA+AGG - chr7_2:67889356-67889375 Msa1071380:three_prime_UTR 55.0%
GGAGGAGTGAGTGTCTTGGA+AGG + chr7_2:67889415-67889434 None:intergenic 55.0%
GACACTCACTCCTCCATGTC+AGG - chr7_2:67889420-67889439 Msa1071380:exon 55.0%
CACTCCTCCATGTCAGGTAC+AGG - chr7_2:67889426-67889445 Msa1071380:exon 55.0%
GGTACCTGTACCTGACATGG+AGG + chr7_2:67889433-67889452 None:intergenic 55.0%
GCTGAGGTTGACAAGCCACT+TGG - chr7_2:67889809-67889828 Msa1071380:intron 55.0%
TGGCCTAAGGTGAGACCAAG+TGG + chr7_2:67889827-67889846 None:intergenic 55.0%
GAGGGAATGCAGCAAGAGCA+GGG - chr7_2:67890146-67890165 Msa1071380:intron 55.0%
! CGTACCTGGTTTGTGTGTGG+CGG - chr7_2:67891524-67891543 Msa1071380:CDS 55.0%
!! GGAAGAGCTATTGGTGGTGG+AGG - chr7_2:67891709-67891728 Msa1071380:intron 55.0%
GGAGGGAATGCAGCAAGAGC+AGG - chr7_2:67890145-67890164 Msa1071380:intron 60.0%
! CGAGGAGGAGCAGGACGTTT+TGG + chr7_2:67891034-67891053 None:intergenic 60.0%
!! AGTAGCTCTGGCCTGCATGG+TGG + chr7_2:67891224-67891243 None:intergenic 60.0%
!! GTGAGTAGCTCTGGCCTGCA+TGG + chr7_2:67891227-67891246 None:intergenic 60.0%
AGCACCGCCACACACAAACC+AGG + chr7_2:67891531-67891550 None:intergenic 60.0%
GGTGGAGGGTTGCCTCCAAT+TGG - chr7_2:67891724-67891743 Msa1071380:intron 60.0%
!! GTGGCTGGTTTAGGGGCTGT+TGG - chr7_2:67891763-67891782 Msa1071380:intron 60.0%
CGTCCTGCTCCTCCTCGCTT+CGG - chr7_2:67891037-67891056 Msa1071380:CDS 65.0%
GTCCTGCTCCTCCTCGCTTC+GGG - chr7_2:67891038-67891057 Msa1071380:CDS 65.0%
CTCCCGAAGCGAGGAGGAGC+AGG + chr7_2:67891043-67891062 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 67889075 67892171 67889075 ID=Msa1071380;Name=Msa1071380
chr7_2 mRNA 67889075 67892171 67889075 ID=Msa1071380-mRNA-1;Parent=Msa1071380;Name=Msa1071380-mRNA-1;_AED=0.06;_eAED=0.06;_QI=256|0.8|0.83|1|1|1|6|358|276
chr7_2 exon 67889075 67889606 67889075 ID=Msa1071380-mRNA-1:exon:14803;Parent=Msa1071380-mRNA-1
chr7_2 exon 67889946 67890014 67889946 ID=Msa1071380-mRNA-1:exon:14802;Parent=Msa1071380-mRNA-1
chr7_2 exon 67890153 67890246 67890153 ID=Msa1071380-mRNA-1:exon:14801;Parent=Msa1071380-mRNA-1
chr7_2 exon 67890947 67891113 67890947 ID=Msa1071380-mRNA-1:exon:14800;Parent=Msa1071380-mRNA-1
chr7_2 exon 67891372 67891587 67891372 ID=Msa1071380-mRNA-1:exon:14799;Parent=Msa1071380-mRNA-1
chr7_2 exon 67891805 67892171 67891805 ID=Msa1071380-mRNA-1:exon:14798;Parent=Msa1071380-mRNA-1
chr7_2 five_prime_UTR 67891916 67892171 67891916 ID=Msa1071380-mRNA-1:five_prime_utr;Parent=Msa1071380-mRNA-1
chr7_2 CDS 67891805 67891915 67891805 ID=Msa1071380-mRNA-1:cds;Parent=Msa1071380-mRNA-1
chr7_2 CDS 67891372 67891587 67891372 ID=Msa1071380-mRNA-1:cds;Parent=Msa1071380-mRNA-1
chr7_2 CDS 67890947 67891113 67890947 ID=Msa1071380-mRNA-1:cds;Parent=Msa1071380-mRNA-1
chr7_2 CDS 67890153 67890246 67890153 ID=Msa1071380-mRNA-1:cds;Parent=Msa1071380-mRNA-1
chr7_2 CDS 67889946 67890014 67889946 ID=Msa1071380-mRNA-1:cds;Parent=Msa1071380-mRNA-1
chr7_2 CDS 67889433 67889606 67889433 ID=Msa1071380-mRNA-1:cds;Parent=Msa1071380-mRNA-1
chr7_2 three_prime_UTR 67889075 67889432 67889075 ID=Msa1071380-mRNA-1:three_prime_utr;Parent=Msa1071380-mRNA-1
Gene Sequence

>Msa1071380

ATGTCAGCTATGGTTGCAGGTACCTCCTCTGCCACTTTCACCACAAGGAGTAACCACTCCATCAAAAACACTCACATCAGACCTTCCAAGACACTCACTCCTCCATGTCAGAAAACATCTTTGCTAGGCCTCTCACTTCATGAAGCCAAAAGGGGTGTTTCAGGATCCTTCCTAGGTGACAACAAAAGTGGTTCTTCCTCCATTGCTAGAAAGAGACTTGAGATCACTGCAAGAACTGCTGGAGCTTCAAAGACAATTGAAGCTGAGGTTGACAAGCCACTTGGTCTCACCTTAGGCCAAAAGAATGGTGGCGGTGTTGTTATAACGGCTGTTGAAGGTGGAGGGAATGCAGCAAGAGCAGGGTTAAAGTCAGGGGACCAAGTTCTATATACTAGCAGTTTCTTTGGAGATGAATTATGGCCAGCAGATAAGCTTGGATTCACGAAAACAGCAATCAACGCTAAGCCTGACTCTGTCTACTTTGTTGTCAGCAGAGGTGGTGCTGATGTAGATGTTAAAAGGCTTCCAAAACGTCCTGCTCCTCCTCGCTTCGGGAGAAAATTGACTGAGACTCAAAAGGCAAGAATCGCCAGAGCTACTCACATTTGCCTTGACTGTGGATACATATACTTCTTACCAAAATCTTTTGATGACCAGCCGGACACATACAGTTGTCCCCAATGTCAAGCACCAAAGAAGAGGTTTGCTGAGTATGATGTTAACACAGGAAGAGCTATTGGTGGTGGAGGGTTGCCTCCAATTGGAGTTATTATTGGACTTGTGGCTGGTTTAGGGGCTGTTGGAGCTTTACTTGTTTTTGGTCTTCAGTGA

Protein sequence

>Msa1071380

MSAMVAGTSSATFTTRSNHSIKNTHIRPSKTLTPPCQKTSLLGLSLHEAKRGVSGSFLGDNKSGSSSIARKRLEITARTAGASKTIEAEVDKPLGLTLGQKNGGGVVITAVEGGGNAARAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAINAKPDSVYFVVSRGGADVDVKRLPKRPAPPRFGRKLTETQKARIARATHICLDCGYIYFLPKSFDDQPDTYSCPQCQAPKKRFAEYDVNTGRAIGGGGLPPIGVIIGLVAGLGAVGALLVFGLQ*