AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0749160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0749160 MtrunA17_Chr5g0395851 98.188 276 2 1 1 276 1 273 0.0 546
Msa0749160 MtrunA17_Chr3g0131571 47.619 63 24 2 181 241 56 111 8.58e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0749160 AT5G17170.1 77.500 240 48 4 37 276 38 271 4.07e-127 362
Msa0749160 AT5G17170.2 73.292 161 41 2 36 196 37 195 1.86e-74 227
Msa0749160 AT5G51010.1 34.545 110 42 4 182 273 52 149 6.90e-11 59.7

Find 115 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGACTTGTGGCTGGTTT+AGG 0.164794 5_2:-2560563 Msa0749160:CDS
ACCTGGTCATCAAAAGATTT+TGG 0.172641 5_2:+2561038 None:intergenic
CCTCCAATTGGAGTTATTAT+TGG 0.179719 5_2:-2560581 Msa0749160:CDS
AATTATCACAGTTAGTTTCT+AGG 0.182886 5_2:+2560350 None:intergenic
TTGGACTTGTGGCTGGTTTA+GGG 0.187713 5_2:-2560562 Msa0749160:CDS
CTTCTTTGGTGCTTGACATT+GGG 0.228557 5_2:+2560658 None:intergenic
GAAGCCAAAAGGGGTGTTTC+AGG 0.237048 5_2:-2562636 Msa0749160:CDS
CGAGGAGGAGCAGGACGTTT+TGG 0.239182 5_2:+2561287 None:intergenic
GGCCAGATGGTGAGGTTCTT+TGG 0.291144 5_2:-2563248 Msa0749160:five_prime_UTR
CAACACCGCCACCATTCTTT+TGG 0.291572 5_2:+2562481 None:intergenic
TCTAACACTCACTCTTCTAT+TGG 0.292576 5_2:+2560206 None:intergenic
CTATATACTAGCAGTTTCTT+TGG 0.295714 5_2:-2562135 Msa0749160:CDS
AACAGATCACACAATTAAAA+AGG 0.303925 5_2:-2563122 Msa0749160:five_prime_UTR
GTTTCTTTGGAGATGAATTA+TGG 0.304420 5_2:-2562122 Msa0749160:CDS
TACTCAGCAAACCTCTTCTT+TGG 0.321989 5_2:+2560644 None:intergenic
TTCAAAAGAATCAGTTGTTT+TGG 0.328968 5_2:-2563051 Msa0749160:five_prime_UTR
GGATCCTGAAACACCCCTTT+TGG 0.340292 5_2:+2562632 None:intergenic
GTCCTGCTCCTCCTCGCTTC+GGG 0.350568 5_2:-2561280 Msa0749160:CDS
CGTCCTGCTCCTCCTCGCTT+CGG 0.368149 5_2:-2561281 Msa0749160:CDS
TATCTTCTTTAGGCTGTTGA+AGG 0.389713 5_2:-2562204 Msa0749160:intron
GGTGGAGGGTTGCCTCCAAT+TGG 0.394086 5_2:-2560593 Msa0749160:CDS
AGCTTAGTTGAGTTGGTGTT+AGG 0.397535 5_2:+2563154 None:intergenic
GTGCTGATGTAGATGTTAAA+AGG 0.409204 5_2:-2561313 Msa0749160:CDS
CTCACTTCATGAAGCCAAAA+GGG 0.411600 5_2:-2562646 Msa0749160:CDS
TCTTCTTTGGTGCTTGACAT+TGG 0.416965 5_2:+2560657 None:intergenic
CTAACACTCACTCTTCTATT+GGG 0.422967 5_2:+2560207 None:intergenic
ATTCCAAGGTTGGACAACTT+TGG 0.424659 5_2:+2560463 None:intergenic
GTGGCTGGTTTAGGGGCTGT+TGG 0.432164 5_2:-2560554 Msa0749160:CDS
GAATGTTTCTAGCATTTCTC+AGG 0.435034 5_2:-2560167 None:intergenic
ACCATGTCAGCTATGGTTGC+AGG 0.435247 5_2:-2562997 Msa0749160:CDS
AGTCCAATAATAACTCCAAT+TGG 0.436833 5_2:+2560578 None:intergenic
GCAAGAGCAGGGTTAAAGTC+AGG 0.440054 5_2:-2562168 Msa0749160:CDS
GTTATTATTGGACTTGTGGC+TGG 0.444557 5_2:-2560569 Msa0749160:CDS
CTCCCGAAGCGAGGAGGAGC+AGG 0.447605 5_2:+2561278 None:intergenic
CTGTCTACTTTGTTGTCAGC+AGG 0.450428 5_2:-2562047 Msa0749160:intron
GAGATCACTGCAAGAACTGC+TGG 0.452185 5_2:-2562558 Msa0749160:CDS
GGAGGGAATGCAGCAAGAGC+AGG 0.457313 5_2:-2562180 Msa0749160:CDS
GTGGGACTCACCACTTTATG+TGG 0.458423 5_2:+2560240 None:intergenic
CTTTAGGCTGTTGAAGGTGG+AGG 0.458505 5_2:-2562198 Msa0749160:intron
TCTCACTTCATGAAGCCAAA+AGG 0.462437 5_2:-2562647 Msa0749160:CDS
TTCTTTGGTGCTTGACATTG+GGG 0.463539 5_2:+2560659 None:intergenic
CACCAAAGAACCTCACCATC+TGG 0.464799 5_2:+2563246 None:intergenic
CTTCTTTAGGCTGTTGAAGG+TGG 0.466334 5_2:-2562201 Msa0749160:intron
ATTGCATATGTGCAAATTGA+AGG 0.466677 5_2:-2560419 Msa0749160:three_prime_UTR
GACACTCACTCCTCCATGTC+AGG 0.476168 5_2:-2562905 Msa0749160:intron
AAGGCAAATGTGAGTAGCTC+TGG 0.479447 5_2:+2561085 None:intergenic
AAGCCACTTGGTCTCACCTT+AGG 0.480037 5_2:-2562504 Msa0749160:CDS
GTTAACACAGGAAGAGCTAT+TGG 0.480695 5_2:-2560617 Msa0749160:CDS
CTGCAGAAAACATCTTTGCT+AGG 0.481605 5_2:-2562672 Msa0749160:intron
AATTTGCACATATGCAATCA+AGG 0.485372 5_2:+2560424 None:intergenic
ACAACAAAGTAGACAGAGTC+AGG 0.485537 5_2:+2562054 None:intergenic
AGCCACAAGCTTAGTTGAGT+TGG 0.485667 5_2:+2563147 None:intergenic
TGAGATACAAATTCCAAGGT+TGG 0.488440 5_2:+2560453 None:intergenic
CTCAAGTCTCTTTCTAGCAA+TGG 0.494877 5_2:+2562578 None:intergenic
AAAATGAATCCCACATAAAG+TGG 0.495336 5_2:-2560250 Msa0749160:three_prime_UTR
ATGGTTCCTTGTGGAAAGAA+AGG 0.502076 5_2:+2563015 None:intergenic
AAAATTGACTGAGACTCAAA+AGG 0.506048 5_2:-2561255 Msa0749160:CDS
GGTGTTTCAGGATCCTTCCT+AGG 0.507560 5_2:-2562624 Msa0749160:CDS
AACTGCTAGTATATAGAACT+TGG 0.513842 5_2:+2562142 None:intergenic
TGGTGGCGGTGTTGTTATAA+CGG 0.514700 5_2:-2562472 Msa0749160:intron
GGAAGAGCTATTGGTGGTGG+AGG 0.514930 5_2:-2560608 Msa0749160:CDS
ATTTCACTCGATAAGAGAAT+AGG 0.516720 5_2:+2560287 None:intergenic
TGGACTTGTGGCTGGTTTAG+GGG 0.521175 5_2:-2560561 Msa0749160:CDS
ACTCCAAAGTTGTCCAACCT+TGG 0.529497 5_2:-2560466 Msa0749160:three_prime_UTR
GTGAATCCAAGCTTATCTGC+TGG 0.535393 5_2:+2562099 None:intergenic
TGCAGAAAACATCTTTGCTA+GGG 0.536127 5_2:-2562671 Msa0749160:intron
TTTAGGCTGTTGAAGGTGGA+GGG 0.538963 5_2:-2562197 Msa0749160:intron
TTATGGCCAGCAGATAAGCT+TGG 0.539708 5_2:-2562105 Msa0749160:CDS
CCAATAATAACTCCAATTGG+AGG 0.544692 5_2:+2560581 None:intergenic
GAAACTAACTGTGATAATTG+AGG 0.547137 5_2:-2560346 Msa0749160:three_prime_UTR
ACAGGAAGAGCTATTGGTGG+TGG 0.551544 5_2:-2560611 Msa0749160:CDS
TTTCTGAGATACAAATTCCA+AGG 0.554244 5_2:+2560449 None:intergenic
TTCCTTCCTTTCTTTCCACA+AGG 0.557681 5_2:-2563021 Msa0749160:five_prime_UTR
ACAAGGAACCATGTCAGCTA+TGG 0.558535 5_2:-2563004 Msa0749160:exon
TGGAGTTATTATTGGACTTG+TGG 0.561374 5_2:-2560573 Msa0749160:CDS
TTCCTTGTGGAAAGAAAGGA+AGG 0.563057 5_2:+2563019 None:intergenic
TTCAAAGACAATTGAAGCTG+AGG 0.563353 5_2:-2562532 Msa0749160:CDS
TGGGGACAACTGTATGTGTC+CGG 0.563574 5_2:+2560677 None:intergenic
CCTTGTGGTGAAAGTGGCAG+AGG 0.564639 5_2:+2562969 None:intergenic
CGGCTTGAGGCCAGATGGTG+AGG 0.565975 5_2:-2563256 None:intergenic
CAAGAGCAGGGTTAAAGTCA+GGG 0.567341 5_2:-2562167 Msa0749160:CDS
CTCACCTTAGGCCAAAAGAA+TGG 0.568349 5_2:-2562492 Msa0749160:CDS
GCTGAGGTTGACAAGCCACT+TGG 0.570324 5_2:-2562516 Msa0749160:CDS
AACGGTACCTGTACCTGACA+TGG 0.581994 5_2:+2562892 None:intergenic
GTTACTCCTTGTGGTGAAAG+TGG 0.585891 5_2:+2562963 None:intergenic
TTCCTAGGTGACAACAAAAG+TGG 0.586607 5_2:-2562609 Msa0749160:CDS
ACCTGCAACCATAGCTGACA+TGG 0.586903 5_2:+2562996 None:intergenic
AATGTCAAGCACCAAAGAAG+AGG 0.589836 5_2:-2560655 Msa0749160:CDS
GATGGAGTGGTTACTCCTTG+TGG 0.593369 5_2:+2562954 None:intergenic
CACCAACTCAACTAAGCTTG+TGG 0.596840 5_2:-2563149 Msa0749160:five_prime_UTR
AAGTCTCTTTCTAGCAATGG+AGG 0.597338 5_2:+2562581 None:intergenic
AAGAGCAGGGTTAAAGTCAG+GGG 0.598127 5_2:-2562166 Msa0749160:CDS
ATGTGTATAAAGCATGCAAG+AGG 0.599952 5_2:+2563078 None:intergenic
TGGGACTCACCACTTTATGT+GGG 0.604299 5_2:+2560241 None:intergenic
TGGCCTAAGGTGAGACCAAG+TGG 0.607786 5_2:+2562501 None:intergenic
TGTGGTGAAAGTGGCAGAGG+AGG 0.609801 5_2:+2562972 None:intergenic
AGTATATGTATCCACAGTCA+AGG 0.610259 5_2:+2561066 None:intergenic
ACATGGAGGAGTGAGTGTCT+TGG 0.612341 5_2:+2562909 None:intergenic
GAGGGAATGCAGCAAGAGCA+GGG 0.612440 5_2:-2562179 Msa0749160:CDS
AAGGTTGGACAACTTTGGAG+TGG 0.618969 5_2:+2560468 None:intergenic
GAAGAGCTATTGGTGGTGGA+GGG 0.622209 5_2:-2560607 Msa0749160:CDS
GCTGAGTATGATGTTAACAC+AGG 0.623493 5_2:-2560629 Msa0749160:CDS
TTAGGCCAAAAGAATGGTGG+CGG 0.624691 5_2:-2562486 Msa0749160:CDS
ACTCACATTTGCCTTGACTG+TGG 0.627650 5_2:-2561077 Msa0749160:CDS
ATAGCTGACATGGTTCCTTG+TGG 0.631401 5_2:+2563006 None:intergenic
CCTCTGCCACTTTCACCACA+AGG 0.635741 5_2:-2562969 Msa0749160:CDS
TCACTTCATGAAGCCAAAAG+GGG 0.637786 5_2:-2562645 Msa0749160:CDS
TAGAACGGCTTGAGGCCAGA+TGG 0.640150 5_2:-2563261 None:intergenic
GGAGGAGTGAGTGTCTTGGA+AGG 0.640900 5_2:+2562913 None:intergenic
AACACAGGAAGAGCTATTGG+TGG 0.646702 5_2:-2560614 Msa0749160:CDS
ACCTTAGGCCAAAAGAATGG+TGG 0.660294 5_2:-2562489 Msa0749160:CDS
CTATTGGGTGAAAACCATGT+GGG 0.660941 5_2:+2560222 None:intergenic
TCTATTGGGTGAAAACCATG+TGG 0.671909 5_2:+2560221 None:intergenic
ATAAAGTGGTGAGTCCCACA+TGG 0.673249 5_2:-2560236 Msa0749160:three_prime_UTR
GGTACCTGTACCTGACATGG+AGG 0.738019 5_2:+2562895 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAAAAATTAAAAAAAGTA+GGG - chr5_2:2561588-2561607 Msa0749160:intron 10.0%
!! AAATTGAATAAAATTTATGT+AGG - chr5_2:2561614-2561633 Msa0749160:intron 10.0%
!! AATTGAATAAAATTTATGTA+GGG - chr5_2:2561615-2561634 Msa0749160:intron 10.0%
!!! TTTTATATATATATATGTGA+TGG + chr5_2:2562410-2562429 None:intergenic 10.0%
!! TTAAAAAAAATATACATGTT+GGG + chr5_2:2562509-2562528 None:intergenic 10.0%
!! TTTAAAAAAAATATACATGT+TGG + chr5_2:2562510-2562529 None:intergenic 10.0%
!!! AAGAAAGATAATATGTTTTT+GGG + chr5_2:2560213-2560232 None:intergenic 15.0%
!!! AAAGAAAGATAATATGTTTT+TGG + chr5_2:2560214-2560233 None:intergenic 15.0%
!!! GACTAAATTTGAAATTTTAT+TGG + chr5_2:2561501-2561520 None:intergenic 15.0%
!! CTGTAAAAATTAAAAAAAGT+AGG - chr5_2:2561587-2561606 Msa0749160:intron 15.0%
!! AATAAGATATAGAAAATTGA+TGG - chr5_2:2561789-2561808 Msa0749160:intron 15.0%
!!! AATGACAACATTGATTTAAT+GGG + chr5_2:2560991-2561010 None:intergenic 20.0%
!!! TTGTTCAATTTGATTTCATA+AGG - chr5_2:2561533-2561552 Msa0749160:intron 20.0%
!!! TTTTGTAGCAATAACAATAA+GGG + chr5_2:2561697-2561716 None:intergenic 20.0%
!!! ATTTTGTAGCAATAACAATA+AGG + chr5_2:2561698-2561717 None:intergenic 20.0%
!! AACCATTCAATTATGTAAAA+TGG + chr5_2:2562282-2562301 None:intergenic 20.0%
!! ATATAAAAGATAAAGTCTCT+TGG + chr5_2:2562453-2562472 None:intergenic 20.0%
!!! AGATGATTTTAGATTAAAGT+TGG - chr5_2:2562666-2562685 Msa0749160:CDS 20.0%
!!! AAAGATAATATGTTTTTGGG+TGG + chr5_2:2560210-2560229 None:intergenic 25.0%
! AACAGATCACACAATTAAAA+AGG - chr5_2:2560296-2560315 Msa0749160:three_prime_UTR 25.0%
!! TTCAAAAGAATCAGTTGTTT+TGG - chr5_2:2560367-2560386 Msa0749160:three_prime_UTR 25.0%
! TAATCATGCAAAGAAAAGAA+CGG + chr5_2:2560547-2560566 None:intergenic 25.0%
!! TTTTCTTTGCATGATTACTT+CGG - chr5_2:2560550-2560569 Msa0749160:CDS 25.0%
! ATCATTTGAATTCAACTAGT+TGG - chr5_2:2560662-2560681 Msa0749160:CDS 25.0%
!!! CAATGACAACATTGATTTAA+TGG + chr5_2:2560992-2561011 None:intergenic 25.0%
! CATTAAATCAATGTTGTCAT+TGG - chr5_2:2560990-2561009 Msa0749160:intron 25.0%
! ATTTCACCACTATATATACA+AGG + chr5_2:2561753-2561772 None:intergenic 25.0%
! TTGTATATATAGTGGTGAAA+TGG - chr5_2:2561752-2561771 Msa0749160:intron 25.0%
! TGTATATATAGTGGTGAAAT+GGG - chr5_2:2561753-2561772 Msa0749160:intron 25.0%
! TGGTAAGACTAAAATAAGTT+CGG - chr5_2:2561809-2561828 Msa0749160:intron 25.0%
! AAGTAACTGATAAACAGAAT+AGG + chr5_2:2562028-2562047 None:intergenic 25.0%
! ACAAAAACATGAAAATAGTC+AGG + chr5_2:2562073-2562092 None:intergenic 25.0%
!!! TTCATGTTTTTGTTATGAAG+AGG - chr5_2:2562080-2562099 Msa0749160:CDS 25.0%
! GATGACAAATAAATACTACT+AGG + chr5_2:2562245-2562264 None:intergenic 25.0%
!! GTCCATTTTACATAATTGAA+TGG - chr5_2:2562277-2562296 Msa0749160:intron 25.0%
! TAAAAATGTCTGACATGTAT+TGG - chr5_2:2562526-2562545 Msa0749160:CDS 25.0%
!! AATTATCACAGTTAGTTTCT+AGG + chr5_2:2563071-2563090 None:intergenic 25.0%
!! ATTCATTTTCAATGTGTGTT+AGG + chr5_2:2563157-2563176 None:intergenic 25.0%
AATTCAACTAGTTGGTTAGT+TGG - chr5_2:2560670-2560689 Msa0749160:CDS 30.0%
ATCAACCTGAAATGAAATGT+CGG + chr5_2:2561033-2561052 None:intergenic 30.0%
TGAAATGTAACCATATGTGT+CGG + chr5_2:2561081-2561100 None:intergenic 30.0%
AGATGCGTATTATCTTCTTT+AGG - chr5_2:2561204-2561223 Msa0749160:intron 30.0%
AACTGCTAGTATATAGAACT+TGG + chr5_2:2561279-2561298 None:intergenic 30.0%
CTATATACTAGCAGTTTCTT+TGG - chr5_2:2561283-2561302 Msa0749160:CDS 30.0%
! GTTTCTTTGGAGATGAATTA+TGG - chr5_2:2561296-2561315 Msa0749160:CDS 30.0%
GAACAAAGTTTAGTAGCAAA+AGG + chr5_2:2561407-2561426 None:intergenic 30.0%
AATGGATGCAATTAAGGAAA+TGG + chr5_2:2561429-2561448 None:intergenic 30.0%
!!! TGACATAGGTTAGTTTTTGT+TGG - chr5_2:2561456-2561475 Msa0749160:intron 30.0%
!!! GACATAGGTTAGTTTTTGTT+GGG - chr5_2:2561457-2561476 Msa0749160:intron 30.0%
!!! TGAAAAGGTCGTAGTTTTAT+AGG - chr5_2:2561645-2561664 Msa0749160:intron 30.0%
!!! GAAAAGGTCGTAGTTTTATA+GGG - chr5_2:2561646-2561665 Msa0749160:intron 30.0%
ACACTACCTTGTATATATAG+TGG - chr5_2:2561744-2561763 Msa0749160:intron 30.0%
!!! TTTTTTCTCTCTCTTTCACA+AGG + chr5_2:2561889-2561908 None:intergenic 30.0%
!! ATGTTTTTGTTATGAAGAGG+TGG - chr5_2:2562083-2562102 Msa0749160:CDS 30.0%
AAAATTGACTGAGACTCAAA+AGG - chr5_2:2562163-2562182 Msa0749160:CDS 30.0%
! GCAAGAATCGTTATTCATTT+TGG - chr5_2:2562185-2562204 Msa0749160:CDS 30.0%
!! GTCTCTTGGCAATTATTTTT+AGG + chr5_2:2562439-2562458 None:intergenic 30.0%
AAAGTTGGATTATCAACATC+TGG - chr5_2:2562681-2562700 Msa0749160:intron 30.0%
ATTATTTATGTCATTGCAGC+CGG - chr5_2:2562722-2562741 Msa0749160:intron 30.0%
AGTCCAATAATAACTCCAAT+TGG + chr5_2:2562843-2562862 None:intergenic 30.0%
!! TTTCTGAGATACAAATTCCA+AGG + chr5_2:2562972-2562991 None:intergenic 30.0%
AATTTGCACATATGCAATCA+AGG + chr5_2:2562997-2563016 None:intergenic 30.0%
ATTGCATATGTGCAAATTGA+AGG - chr5_2:2562999-2563018 Msa0749160:exon 30.0%
GAAACTAACTGTGATAATTG+AGG - chr5_2:2563072-2563091 Msa0749160:five_prime_UTR 30.0%
ATTTCACTCGATAAGAGAAT+AGG + chr5_2:2563134-2563153 None:intergenic 30.0%
AAAATGAATCCCACATAAAG+TGG - chr5_2:2563168-2563187 Msa0749160:five_prime_UTR 30.0%
!!! CATGCAAGAGGAGTTTTTTT+GGG + chr5_2:2560331-2560350 None:intergenic 35.0%
ATGTGTATAAAGCATGCAAG+AGG + chr5_2:2560343-2560362 None:intergenic 35.0%
!! TCTGATGTGAGTGTTTTTGA+TGG + chr5_2:2560485-2560504 None:intergenic 35.0%
TGCAGAAAACATCTTTGCTA+GGG - chr5_2:2560747-2560766 Msa0749160:intron 35.0%
TTCAAAGACAATTGAAGCTG+AGG - chr5_2:2560886-2560905 Msa0749160:intron 35.0%
!! GACATTTCATTTCAGGTTGA+TGG - chr5_2:2561032-2561051 Msa0749160:intron 35.0%
TATCTTCTTTAGGCTGTTGA+AGG - chr5_2:2561214-2561233 Msa0749160:intron 35.0%
CAACAGAATGGATGCAATTA+AGG + chr5_2:2561435-2561454 None:intergenic 35.0%
ATTTCATAAGGACTAAACGC+AGG - chr5_2:2561545-2561564 Msa0749160:intron 35.0%
ATGTAGGGACTAAACTGAAA+AGG - chr5_2:2561630-2561649 Msa0749160:intron 35.0%
TATACAAGGTAGTGTTGCAA+GGG + chr5_2:2561739-2561758 None:intergenic 35.0%
ATATACAAGGTAGTGTTGCA+AGG + chr5_2:2561740-2561759 None:intergenic 35.0%
! TGACATAGAATTGGTGACAT+TGG - chr5_2:2561844-2561863 Msa0749160:intron 35.0%
GTCAATCACAATGTTACAAG+TGG + chr5_2:2561915-2561934 None:intergenic 35.0%
! TGACATAGAATTGGTGACAT+TGG + chr5_2:2561844-2561863 None:intergenic 35.0%
GATTGCATACTGAACTTACT+GGG + chr5_2:2561969-2561988 None:intergenic 35.0%
AGATTGCATACTGAACTTAC+TGG + chr5_2:2561970-2561989 None:intergenic 35.0%
! TGTGTATGAAGAGTATACTG+TGG - chr5_2:2562000-2562019 Msa0749160:intron 35.0%
! GTGCTGATGTAGATGTTAAA+AGG - chr5_2:2562105-2562124 Msa0749160:CDS 35.0%
AGTATATGTATCCACAGTCA+AGG + chr5_2:2562355-2562374 None:intergenic 35.0%
!! ACCAAAATCTTTTGATGACC+AGG - chr5_2:2562379-2562398 Msa0749160:intron 35.0%
! ACCTGGTCATCAAAAGATTT+TGG + chr5_2:2562383-2562402 None:intergenic 35.0%
!! ATATATGTGATGGACTTACC+TGG + chr5_2:2562400-2562419 None:intergenic 35.0%
CCAATAATAACTCCAATTGG+AGG + chr5_2:2562840-2562859 None:intergenic 35.0%
CCTCCAATTGGAGTTATTAT+TGG - chr5_2:2562837-2562856 Msa0749160:intron 35.0%
TGGAGTTATTATTGGACTTG+TGG - chr5_2:2562845-2562864 Msa0749160:intron 35.0%
!! GTTGGAGCTTTACTTGTTTT+TGG - chr5_2:2562882-2562901 Msa0749160:intron 35.0%
TGAGATACAAATTCCAAGGT+TGG + chr5_2:2562968-2562987 None:intergenic 35.0%
CTAACACTCACTCTTCTATT+GGG + chr5_2:2563214-2563233 None:intergenic 35.0%
TCTAACACTCACTCTTCTAT+TGG + chr5_2:2563215-2563234 None:intergenic 35.0%
!! AGCTTAGTTGAGTTGGTGTT+AGG + chr5_2:2560267-2560286 None:intergenic 40.0%
!!! GCATGCAAGAGGAGTTTTTT+TGG + chr5_2:2560332-2560351 None:intergenic 40.0%
TTCCTTCCTTTCTTTCCACA+AGG - chr5_2:2560397-2560416 Msa0749160:three_prime_UTR 40.0%
TTCCTTGTGGAAAGAAAGGA+AGG + chr5_2:2560402-2560421 None:intergenic 40.0%
ATGGTTCCTTGTGGAAAGAA+AGG + chr5_2:2560406-2560425 None:intergenic 40.0%
!! TGTGAGTGTTTTTGATGGAG+TGG + chr5_2:2560480-2560499 None:intergenic 40.0%
CTTTGCATGATTACTTCGGT+CGG - chr5_2:2560554-2560573 Msa0749160:CDS 40.0%
CTGCAGAAAACATCTTTGCT+AGG - chr5_2:2560746-2560765 Msa0749160:intron 40.0%
TCTCACTTCATGAAGCCAAA+AGG - chr5_2:2560771-2560790 Msa0749160:intron 40.0%
CTCACTTCATGAAGCCAAAA+GGG - chr5_2:2560772-2560791 Msa0749160:intron 40.0%
TCACTTCATGAAGCCAAAAG+GGG - chr5_2:2560773-2560792 Msa0749160:intron 40.0%
!! ACTTTTGTTGTCACCTAGGA+AGG + chr5_2:2560810-2560829 None:intergenic 40.0%
TTCCTAGGTGACAACAAAAG+TGG - chr5_2:2560809-2560828 Msa0749160:intron 40.0%
!! AACCACTTTTGTTGTCACCT+AGG + chr5_2:2560814-2560833 None:intergenic 40.0%
! AAGTCTCTTTCTAGCAATGG+AGG + chr5_2:2560840-2560859 None:intergenic 40.0%
! CTCAAGTCTCTTTCTAGCAA+TGG + chr5_2:2560843-2560862 None:intergenic 40.0%
!! TTTCAGGTTGATGGCATGTT+TGG - chr5_2:2561041-2561060 Msa0749160:CDS 40.0%
!! TCGGTGCTTTCTGGTTTAAA+GGG - chr5_2:2561159-2561178 Msa0749160:intron 40.0%
ACAACAAAGTAGACAGAGTC+AGG + chr5_2:2561367-2561386 None:intergenic 40.0%
ATCCATTCTGTTGCTGACAT+AGG - chr5_2:2561442-2561461 Msa0749160:intron 40.0%
AACCTATGTCAGCAACAGAA+TGG + chr5_2:2561447-2561466 None:intergenic 40.0%
ATACAAGGTAGTGTTGCAAG+GGG + chr5_2:2561738-2561757 None:intergenic 40.0%
GCACTTGAGTGACATAGAAT+TGG - chr5_2:2561835-2561854 Msa0749160:intron 40.0%
AAGGATCGTGACATTGTGAT+TGG + chr5_2:2561870-2561889 None:intergenic 40.0%
! ATTGGTGACATTGGTGACAT+TGG + chr5_2:2561937-2561956 None:intergenic 40.0%
CTTACTGGGTGACATAGAAT+TGG + chr5_2:2561955-2561974 None:intergenic 40.0%
! CATCTGATTGAAAGCATGTC+TGG - chr5_2:2562481-2562500 Msa0749160:CDS 40.0%
! TGTCTGACATGTATTGGTGT+CGG - chr5_2:2562532-2562551 Msa0749160:CDS 40.0%
TTGAATGTAACCACGTTCGT+TGG + chr5_2:2562572-2562591 None:intergenic 40.0%
ATTTCTACATGTGTCGTACC+TGG - chr5_2:2562611-2562630 Msa0749160:CDS 40.0%
!! TTCTTTGGTGCTTGACATTG+GGG + chr5_2:2562762-2562781 None:intergenic 40.0%
!! CTTCTTTGGTGCTTGACATT+GGG + chr5_2:2562763-2562782 None:intergenic 40.0%
!! TCTTCTTTGGTGCTTGACAT+TGG + chr5_2:2562764-2562783 None:intergenic 40.0%
AATGTCAAGCACCAAAGAAG+AGG - chr5_2:2562763-2562782 Msa0749160:intron 40.0%
TACTCAGCAAACCTCTTCTT+TGG + chr5_2:2562777-2562796 None:intergenic 40.0%
GCTGAGTATGATGTTAACAC+AGG - chr5_2:2562789-2562808 Msa0749160:intron 40.0%
GTTAACACAGGAAGAGCTAT+TGG - chr5_2:2562801-2562820 Msa0749160:intron 40.0%
GTTATTATTGGACTTGTGGC+TGG - chr5_2:2562849-2562868 Msa0749160:intron 40.0%
ATTCCAAGGTTGGACAACTT+TGG + chr5_2:2562958-2562977 None:intergenic 40.0%
CTATTGGGTGAAAACCATGT+GGG + chr5_2:2563199-2563218 None:intergenic 40.0%
TCTATTGGGTGAAAACCATG+TGG + chr5_2:2563200-2563219 None:intergenic 40.0%
CACCAACTCAACTAAGCTTG+TGG - chr5_2:2560269-2560288 Msa0749160:three_prime_UTR 45.0%
AGCCACAAGCTTAGTTGAGT+TGG + chr5_2:2560274-2560293 None:intergenic 45.0%
ATAGCTGACATGGTTCCTTG+TGG + chr5_2:2560415-2560434 None:intergenic 45.0%
ACAAGGAACCATGTCAGCTA+TGG - chr5_2:2560414-2560433 Msa0749160:three_prime_UTR 45.0%
GTTACTCCTTGTGGTGAAAG+TGG + chr5_2:2560458-2560477 None:intergenic 45.0%
CTCACCTTAGGCCAAAAGAA+TGG - chr5_2:2560926-2560945 Msa0749160:intron 45.0%
ACCTTAGGCCAAAAGAATGG+TGG - chr5_2:2560929-2560948 Msa0749160:intron 45.0%
TTAGGCCAAAAGAATGGTGG+CGG - chr5_2:2560932-2560951 Msa0749160:intron 45.0%
!! TGGTGGCGGTGTTGTTATAA+CGG - chr5_2:2560946-2560965 Msa0749160:intron 45.0%
!! CAGCACCGACATTTCATTTC+AGG - chr5_2:2561025-2561044 Msa0749160:intron 45.0%
GTTGTGTCCTATGTCTGTGT+CGG - chr5_2:2561140-2561159 Msa0749160:intron 45.0%
!! GTCGGTGCTTTCTGGTTTAA+AGG - chr5_2:2561158-2561177 Msa0749160:intron 45.0%
CTTCTTTAGGCTGTTGAAGG+TGG - chr5_2:2561217-2561236 Msa0749160:intron 45.0%
TTTAGGCTGTTGAAGGTGGA+GGG - chr5_2:2561221-2561240 Msa0749160:intron 45.0%
CAAGAGCAGGGTTAAAGTCA+GGG - chr5_2:2561251-2561270 Msa0749160:CDS 45.0%
AAGAGCAGGGTTAAAGTCAG+GGG - chr5_2:2561252-2561271 Msa0749160:CDS 45.0%
TTATGGCCAGCAGATAAGCT+TGG - chr5_2:2561313-2561332 Msa0749160:CDS 45.0%
GTGAATCCAAGCTTATCTGC+TGG + chr5_2:2561322-2561341 None:intergenic 45.0%
! CTGTCTACTTTGTTGTCAGC+AGG - chr5_2:2561371-2561390 Msa0749160:intron 45.0%
AAGGCAAATGTGAGTAGCTC+TGG + chr5_2:2562336-2562355 None:intergenic 45.0%
ACTCACATTTGCCTTGACTG+TGG - chr5_2:2562341-2562360 Msa0749160:intron 45.0%
CACGTTCGTTGGTATCATGT+TGG + chr5_2:2562561-2562580 None:intergenic 45.0%
CAACATGATACCAACGAACG+TGG - chr5_2:2562559-2562578 Msa0749160:CDS 45.0%
AACACAGGAAGAGCTATTGG+TGG - chr5_2:2562804-2562823 Msa0749160:intron 45.0%
!! ATTGGACTTGTGGCTGGTTT+AGG - chr5_2:2562855-2562874 Msa0749160:intron 45.0%
!! TTGGACTTGTGGCTGGTTTA+GGG - chr5_2:2562856-2562875 Msa0749160:intron 45.0%
! AAGGTTGGACAACTTTGGAG+TGG + chr5_2:2562953-2562972 None:intergenic 45.0%
ACTCCAAAGTTGTCCAACCT+TGG - chr5_2:2562952-2562971 Msa0749160:CDS 45.0%
TGGGACTCACCACTTTATGT+GGG + chr5_2:2563180-2563199 None:intergenic 45.0%
ATAAAGTGGTGAGTCCCACA+TGG - chr5_2:2563182-2563201 Msa0749160:five_prime_UTR 45.0%
CACCAAAGAACCTCACCATC+TGG + chr5_2:2560175-2560194 None:intergenic 50.0%
ACCATGTCAGCTATGGTTGC+AGG - chr5_2:2560421-2560440 Msa0749160:three_prime_UTR 50.0%
ACCTGCAACCATAGCTGACA+TGG + chr5_2:2560425-2560444 None:intergenic 50.0%
GATGGAGTGGTTACTCCTTG+TGG + chr5_2:2560467-2560486 None:intergenic 50.0%
ACATGGAGGAGTGAGTGTCT+TGG + chr5_2:2560512-2560531 None:intergenic 50.0%
AACGGTACCTGTACCTGACA+TGG + chr5_2:2560529-2560548 None:intergenic 50.0%
!! GAAGCCAAAAGGGGTGTTTC+AGG - chr5_2:2560782-2560801 Msa0749160:intron 50.0%
! GGATCCTGAAACACCCCTTT+TGG + chr5_2:2560789-2560808 None:intergenic 50.0%
GGTGTTTCAGGATCCTTCCT+AGG - chr5_2:2560794-2560813 Msa0749160:intron 50.0%
GAGATCACTGCAAGAACTGC+TGG - chr5_2:2560860-2560879 Msa0749160:intron 50.0%
AAGCCACTTGGTCTCACCTT+AGG - chr5_2:2560914-2560933 Msa0749160:intron 50.0%
! GCCACCATTCTTTTGGCCTA+AGG + chr5_2:2560933-2560952 None:intergenic 50.0%
! CAACACCGCCACCATTCTTT+TGG + chr5_2:2560940-2560959 None:intergenic 50.0%
TGACACGACACCGACACATA+TGG - chr5_2:2561068-2561087 Msa0749160:CDS 50.0%
!! GAAAGCACCGACACAGACAT+AGG + chr5_2:2561150-2561169 None:intergenic 50.0%
! ATGTCTGTGTCGGTGCTTTC+TGG - chr5_2:2561150-2561169 Msa0749160:intron 50.0%
CTTTAGGCTGTTGAAGGTGG+AGG - chr5_2:2561220-2561239 Msa0749160:intron 50.0%
GCAAGAGCAGGGTTAAAGTC+AGG - chr5_2:2561250-2561269 Msa0749160:CDS 50.0%
! AATTTTCTCCCGAAGCGAGG+AGG + chr5_2:2562149-2562168 None:intergenic 50.0%
! GTCAATTTTCTCCCGAAGCG+AGG + chr5_2:2562152-2562171 None:intergenic 50.0%
! GCATGGTGGTAGTGTACACT+TGG + chr5_2:2562310-2562329 None:intergenic 50.0%
AGTGTACACTACCACCATGC+AGG - chr5_2:2562310-2562329 Msa0749160:intron 50.0%
! TGTCGTACCTGGTTTGTGTG+TGG - chr5_2:2562622-2562641 Msa0749160:CDS 50.0%
TGGGGACAACTGTATGTGTC+CGG + chr5_2:2562744-2562763 None:intergenic 50.0%
ACAGGAAGAGCTATTGGTGG+TGG - chr5_2:2562807-2562826 Msa0749160:intron 50.0%
!! GAAGAGCTATTGGTGGTGGA+GGG - chr5_2:2562811-2562830 Msa0749160:intron 50.0%
!! TGGACTTGTGGCTGGTTTAG+GGG - chr5_2:2562857-2562876 Msa0749160:intron 50.0%
GTGGGACTCACCACTTTATG+TGG + chr5_2:2563181-2563200 None:intergenic 50.0%
GGCCAGATGGTGAGGTTCTT+TGG - chr5_2:2560170-2560189 Msa0749160:three_prime_UTR 55.0%
TGTGGTGAAAGTGGCAGAGG+AGG + chr5_2:2560449-2560468 None:intergenic 55.0%
CCTTGTGGTGAAAGTGGCAG+AGG + chr5_2:2560452-2560471 None:intergenic 55.0%
!! CCTCTGCCACTTTCACCACA+AGG - chr5_2:2560449-2560468 Msa0749160:three_prime_UTR 55.0%
GGAGGAGTGAGTGTCTTGGA+AGG + chr5_2:2560508-2560527 None:intergenic 55.0%
GACACTCACTCCTCCATGTC+AGG - chr5_2:2560513-2560532 Msa0749160:exon 55.0%
CACTCCTCCATGTCAGGTAC+AGG - chr5_2:2560519-2560538 Msa0749160:exon 55.0%
GGTACCTGTACCTGACATGG+AGG + chr5_2:2560526-2560545 None:intergenic 55.0%
GCTGAGGTTGACAAGCCACT+TGG - chr5_2:2560902-2560921 Msa0749160:intron 55.0%
TGGCCTAAGGTGAGACCAAG+TGG + chr5_2:2560920-2560939 None:intergenic 55.0%
GAGGGAATGCAGCAAGAGCA+GGG - chr5_2:2561239-2561258 Msa0749160:intron 55.0%
! CGTACCTGGTTTGTGTGTGG+CGG - chr5_2:2562625-2562644 Msa0749160:CDS 55.0%
!! GGAAGAGCTATTGGTGGTGG+AGG - chr5_2:2562810-2562829 Msa0749160:intron 55.0%
GGAGGGAATGCAGCAAGAGC+AGG - chr5_2:2561238-2561257 Msa0749160:intron 60.0%
! CGAGGAGGAGCAGGACGTTT+TGG + chr5_2:2562134-2562153 None:intergenic 60.0%
!! AGTAGCTCTGGCCTGCATGG+TGG + chr5_2:2562324-2562343 None:intergenic 60.0%
!! GTGAGTAGCTCTGGCCTGCA+TGG + chr5_2:2562327-2562346 None:intergenic 60.0%
AGCACCGCCACACACAAACC+AGG + chr5_2:2562632-2562651 None:intergenic 60.0%
GGTGGAGGGTTGCCTCCAAT+TGG - chr5_2:2562825-2562844 Msa0749160:intron 60.0%
!! GTGGCTGGTTTAGGGGCTGT+TGG - chr5_2:2562864-2562883 Msa0749160:intron 60.0%
CGTCCTGCTCCTCCTCGCTT+CGG - chr5_2:2562137-2562156 Msa0749160:CDS 65.0%
GTCCTGCTCCTCCTCGCTTC+GGG - chr5_2:2562138-2562157 Msa0749160:CDS 65.0%
CTCCCGAAGCGAGGAGGAGC+AGG + chr5_2:2562143-2562162 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 2560168 2563272 2560168 ID=Msa0749160;Name=Msa0749160
chr5_2 mRNA 2560168 2563272 2560168 ID=Msa0749160-mRNA-1;Parent=Msa0749160;Name=Msa0749160-mRNA-1;_AED=0.06;_eAED=0.06;_QI=256|0.8|0.83|1|1|1|6|358|276
chr5_2 exon 2560168 2560699 2560168 ID=Msa0749160-mRNA-1:exon:805;Parent=Msa0749160-mRNA-1
chr5_2 exon 2561040 2561108 2561040 ID=Msa0749160-mRNA-1:exon:804;Parent=Msa0749160-mRNA-1
chr5_2 exon 2561247 2561340 2561247 ID=Msa0749160-mRNA-1:exon:803;Parent=Msa0749160-mRNA-1
chr5_2 exon 2562048 2562214 2562048 ID=Msa0749160-mRNA-1:exon:802;Parent=Msa0749160-mRNA-1
chr5_2 exon 2562473 2562688 2562473 ID=Msa0749160-mRNA-1:exon:801;Parent=Msa0749160-mRNA-1
chr5_2 exon 2562906 2563272 2562906 ID=Msa0749160-mRNA-1:exon:800;Parent=Msa0749160-mRNA-1
chr5_2 five_prime_UTR 2563017 2563272 2563017 ID=Msa0749160-mRNA-1:five_prime_utr;Parent=Msa0749160-mRNA-1
chr5_2 CDS 2562906 2563016 2562906 ID=Msa0749160-mRNA-1:cds;Parent=Msa0749160-mRNA-1
chr5_2 CDS 2562473 2562688 2562473 ID=Msa0749160-mRNA-1:cds;Parent=Msa0749160-mRNA-1
chr5_2 CDS 2562048 2562214 2562048 ID=Msa0749160-mRNA-1:cds;Parent=Msa0749160-mRNA-1
chr5_2 CDS 2561247 2561340 2561247 ID=Msa0749160-mRNA-1:cds;Parent=Msa0749160-mRNA-1
chr5_2 CDS 2561040 2561108 2561040 ID=Msa0749160-mRNA-1:cds;Parent=Msa0749160-mRNA-1
chr5_2 CDS 2560526 2560699 2560526 ID=Msa0749160-mRNA-1:cds;Parent=Msa0749160-mRNA-1
chr5_2 three_prime_UTR 2560168 2560525 2560168 ID=Msa0749160-mRNA-1:three_prime_utr;Parent=Msa0749160-mRNA-1
Gene Sequence

>Msa0749160

ATGTCAGCTATGGTTGCAGGTACCTCCTCTGCCACTTTCACCACAAGGAGTAACCACTCCATCAAAAACACTCACATCAGACCTTCCAAGACACTCACTCCTCCATGTCAGAAAACATCTTTGCTAGGGCTCTCACTTCATGAAGCCAAAAGGGGTGTTTCAGGATCCTTCCTAGGTGACAACAAAAGTGGTTCTTCCTCCATTGCTAGAAAGAGACTTGAGATCACTGCAAGAACTGCTGGAGCTTCAAAGACAATTGAAGCTGAGGTTGACAAGCCACTTGGTCTCACCTTAGGCCAAAAGAATGGTGGCGGTGTTGTTATAACGGCTGTTGAAGGTGGAGGGAATGCAGCAAGAGCAGGGTTAAAGTCAGGGGACCAAGTTCTATATACTAGCAGTTTCTTTGGAGATGAATTATGGCCAGCAGATAAGCTTGGATTCACGAAAACAGCAATCAACGCTAAGCCTGACTCTGTCTACTTTGTTGTCAGCAGAGGTGGTGCTGATGTAGATGTTAAAAGGCTTCCAAAACGTCCTGCTCCTCCTCGCTTCGGGAGAAAATTGACTGAGACTCAAAAGGCAAGAATCGCCAGAGCTACTCACATTTGCCTTGACTGTGGATACATATACTTCTTACCAAAATCTTTTGATGACCAGCCGGACACATACAGTTGTCCCCAATGTCAAGCACCAAAGAAGAGGTTTGCTGAGTATGATGTTAACACAGGAAGAGCTATTGGTGGTGGAGGGTTGCCTCCAATTGGAGTTATTATTGGACTTGTGGCTGGTTTAGGGGCTGTTGGAGCTTTACTTGTTTTTGGTCTTCAGTGA

Protein sequence

>Msa0749160

MSAMVAGTSSATFTTRSNHSIKNTHIRPSKTLTPPCQKTSLLGLSLHEAKRGVSGSFLGDNKSGSSSIARKRLEITARTAGASKTIEAEVDKPLGLTLGQKNGGGVVITAVEGGGNAARAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAINAKPDSVYFVVSRGGADVDVKRLPKRPAPPRFGRKLTETQKARIARATHICLDCGYIYFLPKSFDDQPDTYSCPQCQAPKKRFAEYDVNTGRAIGGGGLPPIGVIIGLVAGLGAVGALLVFGLQ*