Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570360 | XP_003630093.1 | 90.782 | 358 | 8 | 1 | 1 | 333 | 1 | 358 | 0.0 | 667 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570360 | sp|Q39237|TGA1_ARATH | 54.521 | 365 | 130 | 5 | 4 | 332 | 3 | 367 | 5.97e-134 | 388 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570360 | G7LB89 | 90.782 | 358 | 8 | 1 | 1 | 333 | 1 | 358 | 0.0 | 667 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0570360 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0568000 | Msa0570360 | 0.825043 | 5.813208e-54 | -8.615850e-47 |
| Msa0570150 | Msa0570360 | 0.827158 | 1.825817e-54 | -8.615850e-47 |
| Msa0570210 | Msa0570360 | 0.858089 | 1.046356e-62 | -8.615850e-47 |
| Msa0570280 | Msa0570360 | 0.846798 | 1.731862e-59 | -8.615850e-47 |
| Msa0570300 | Msa0570360 | 0.810469 | 1.135225e-50 | -8.615850e-47 |
| Msa0570360 | Msa0570370 | 0.861417 | 1.041049e-63 | -8.615850e-47 |
| Msa0570360 | Msa0570380 | 0.900954 | 4.365720e-78 | -8.615850e-47 |
| Msa0570360 | Msa0570410 | 0.921483 | 3.375920e-88 | -8.615850e-47 |
| Msa0570360 | Msa0570720 | 0.818920 | 1.523840e-52 | -8.615850e-47 |
| Msa0570360 | Msa0570730 | 0.881431 | 2.413488e-70 | -8.615850e-47 |
| Msa0570360 | Msa0570800 | 0.819915 | 9.037314e-53 | -8.615850e-47 |
| Msa0570360 | Msa0570820 | 0.843704 | 1.189241e-58 | -8.615850e-47 |
| Msa0570360 | Msa0570840 | 0.802249 | 6.136434e-49 | -8.615850e-47 |
| Msa0570360 | Msa0570910 | 0.921862 | 2.073001e-88 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570360 | MtrunA17_Chr8g0382861 | 90.782 | 358 | 8 | 1 | 1 | 333 | 1 | 358 | 0.0 | 667 |
| Msa0570360 | MtrunA17_Chr3g0124601 | 62.707 | 362 | 102 | 5 | 4 | 333 | 3 | 363 | 6.21e-160 | 451 |
| Msa0570360 | MtrunA17_Chr3g0115371 | 42.651 | 347 | 167 | 4 | 15 | 329 | 1 | 347 | 7.47e-90 | 273 |
| Msa0570360 | MtrunA17_Chr5g0424861 | 44.957 | 347 | 158 | 6 | 15 | 328 | 1 | 347 | 2.09e-89 | 271 |
| Msa0570360 | MtrunA17_Chr8g0353501 | 48.649 | 296 | 113 | 4 | 70 | 331 | 176 | 466 | 2.02e-84 | 262 |
| Msa0570360 | MtrunA17_Chr7g0256211 | 48.311 | 296 | 114 | 4 | 70 | 331 | 162 | 452 | 4.08e-84 | 261 |
| Msa0570360 | MtrunA17_Chr2g0321431 | 48.043 | 281 | 117 | 4 | 75 | 331 | 194 | 469 | 2.03e-80 | 253 |
| Msa0570360 | MtrunA17_Chr7g0258321 | 41.830 | 306 | 145 | 3 | 59 | 331 | 158 | 463 | 1.56e-76 | 242 |
| Msa0570360 | MtrunA17_Chr5g0422771 | 46.552 | 290 | 118 | 4 | 75 | 331 | 179 | 464 | 3.34e-76 | 241 |
| Msa0570360 | MtrunA17_Chr4g0026401 | 45.907 | 281 | 120 | 3 | 75 | 331 | 189 | 461 | 1.61e-75 | 240 |
| Msa0570360 | MtrunA17_Chr1g0174701 | 38.400 | 375 | 171 | 9 | 3 | 331 | 146 | 506 | 2.64e-73 | 235 |
| Msa0570360 | MtrunA17_Chr1g0210151 | 42.708 | 288 | 135 | 4 | 74 | 331 | 53 | 340 | 5.78e-71 | 224 |
| Msa0570360 | MtrunA17_Chr5g0424851 | 43.694 | 222 | 99 | 1 | 133 | 328 | 1 | 222 | 2.09e-54 | 184 |
| Msa0570360 | MtrunA17_Chr5g0424851 | 43.204 | 206 | 92 | 1 | 141 | 321 | 223 | 428 | 1.08e-48 | 169 |
| Msa0570360 | MtrunA17_Chr3g0093451 | 44.720 | 161 | 81 | 4 | 78 | 230 | 49 | 209 | 6.18e-39 | 137 |
| Msa0570360 | MtrunA17_Chr1g0196951 | 33.495 | 206 | 106 | 5 | 129 | 313 | 34 | 229 | 9.61e-27 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570360 | AT5G65210.5 | 54.521 | 365 | 130 | 5 | 4 | 332 | 3 | 367 | 6.07e-135 | 388 |
| Msa0570360 | AT5G65210.7 | 54.521 | 365 | 130 | 5 | 4 | 332 | 3 | 367 | 6.07e-135 | 388 |
| Msa0570360 | AT5G65210.3 | 54.521 | 365 | 130 | 5 | 4 | 332 | 3 | 367 | 6.07e-135 | 388 |
| Msa0570360 | AT5G65210.1 | 54.521 | 365 | 130 | 5 | 4 | 332 | 3 | 367 | 6.07e-135 | 388 |
| Msa0570360 | AT5G65210.2 | 54.521 | 365 | 130 | 5 | 4 | 332 | 3 | 367 | 6.07e-135 | 388 |
| Msa0570360 | AT5G65210.4 | 54.521 | 365 | 130 | 5 | 4 | 332 | 3 | 367 | 6.07e-135 | 388 |
| Msa0570360 | AT5G10030.5 | 54.821 | 363 | 128 | 5 | 4 | 332 | 3 | 363 | 1.50e-133 | 385 |
| Msa0570360 | AT5G10030.3 | 54.821 | 363 | 128 | 5 | 4 | 332 | 3 | 363 | 1.50e-133 | 385 |
| Msa0570360 | AT5G10030.1 | 54.821 | 363 | 128 | 5 | 4 | 332 | 3 | 363 | 1.50e-133 | 385 |
| Msa0570360 | AT5G10030.4 | 54.821 | 363 | 128 | 5 | 4 | 332 | 3 | 363 | 1.50e-133 | 385 |
| Msa0570360 | AT5G10030.2 | 54.821 | 363 | 128 | 5 | 4 | 332 | 3 | 363 | 1.50e-133 | 385 |
| Msa0570360 | AT5G65210.6 | 60.000 | 285 | 88 | 2 | 74 | 332 | 13 | 297 | 9.16e-118 | 342 |
| Msa0570360 | AT1G22070.1 | 47.541 | 366 | 145 | 5 | 13 | 331 | 17 | 382 | 1.91e-110 | 327 |
| Msa0570360 | AT1G77920.1 | 45.867 | 375 | 151 | 5 | 1 | 332 | 2 | 367 | 2.43e-108 | 321 |
| Msa0570360 | AT5G06950.2 | 49.320 | 294 | 111 | 5 | 71 | 331 | 42 | 330 | 3.30e-84 | 258 |
| Msa0570360 | AT5G06950.4 | 49.320 | 294 | 111 | 5 | 71 | 331 | 42 | 330 | 3.30e-84 | 258 |
| Msa0570360 | AT5G06950.1 | 49.320 | 294 | 111 | 5 | 71 | 331 | 42 | 330 | 3.30e-84 | 258 |
| Msa0570360 | AT5G06950.5 | 49.320 | 294 | 111 | 5 | 71 | 331 | 42 | 330 | 3.30e-84 | 258 |
| Msa0570360 | AT5G06950.3 | 49.320 | 294 | 111 | 5 | 71 | 331 | 42 | 330 | 3.30e-84 | 258 |
| Msa0570360 | AT3G12250.5 | 48.814 | 295 | 113 | 5 | 70 | 331 | 14 | 303 | 1.92e-83 | 255 |
| Msa0570360 | AT3G12250.6 | 48.814 | 295 | 113 | 5 | 70 | 331 | 41 | 330 | 2.51e-83 | 255 |
| Msa0570360 | AT3G12250.2 | 48.814 | 295 | 113 | 5 | 70 | 331 | 41 | 330 | 2.51e-83 | 255 |
| Msa0570360 | AT3G12250.7 | 48.814 | 295 | 113 | 5 | 70 | 331 | 41 | 330 | 2.51e-83 | 255 |
| Msa0570360 | AT3G12250.1 | 48.814 | 295 | 113 | 5 | 70 | 331 | 41 | 330 | 2.51e-83 | 255 |
| Msa0570360 | AT3G12250.3 | 48.814 | 295 | 113 | 5 | 70 | 331 | 35 | 324 | 4.21e-83 | 254 |
| Msa0570360 | AT3G12250.4 | 48.814 | 295 | 113 | 5 | 70 | 331 | 66 | 355 | 2.10e-82 | 254 |
| Msa0570360 | AT1G08320.2 | 48.043 | 281 | 117 | 4 | 75 | 331 | 54 | 329 | 9.42e-82 | 252 |
| Msa0570360 | AT1G08320.5 | 48.043 | 281 | 117 | 4 | 75 | 331 | 54 | 329 | 9.42e-82 | 252 |
| Msa0570360 | AT1G08320.1 | 48.043 | 281 | 117 | 4 | 75 | 331 | 178 | 453 | 1.79e-80 | 253 |
| Msa0570360 | AT1G08320.4 | 48.043 | 281 | 117 | 4 | 75 | 331 | 178 | 453 | 1.79e-80 | 253 |
| Msa0570360 | AT1G08320.3 | 48.043 | 281 | 117 | 4 | 75 | 331 | 178 | 453 | 1.79e-80 | 253 |
| Msa0570360 | AT5G06960.2 | 47.059 | 289 | 117 | 4 | 75 | 331 | 46 | 330 | 7.06e-79 | 244 |
| Msa0570360 | AT5G06960.1 | 47.059 | 289 | 117 | 4 | 75 | 331 | 46 | 330 | 7.06e-79 | 244 |
| Msa0570360 | AT5G06960.3 | 47.059 | 289 | 117 | 4 | 75 | 331 | 26 | 310 | 7.98e-79 | 243 |
| Msa0570360 | AT5G06839.3 | 40.936 | 342 | 151 | 5 | 41 | 331 | 117 | 458 | 2.75e-74 | 236 |
| Msa0570360 | AT5G06839.1 | 42.857 | 308 | 135 | 4 | 65 | 331 | 108 | 415 | 5.46e-74 | 234 |
| Msa0570360 | AT5G06839.2 | 41.748 | 309 | 138 | 3 | 65 | 331 | 108 | 416 | 2.57e-72 | 230 |
| Msa0570360 | AT1G68640.1 | 39.935 | 308 | 151 | 4 | 56 | 331 | 147 | 452 | 1.99e-66 | 216 |
Find 92 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATCAGTGATATACAAAT+TGG | 0.178312 | 4_1:-72515484 | Msa0570360:CDS |
| CATAATCACCTATTCATAAA+TGG | 0.187077 | 4_1:+72514326 | None:intergenic |
| TGATTATTTAACTTCATTTC+AGG | 0.206692 | 4_1:+72517566 | None:intergenic |
| GGATTGGATTGTAATAATTT+AGG | 0.214016 | 4_1:-72516469 | Msa0570360:CDS |
| TAAGAGTCGTTTGAAGAAAA+AGG | 0.214551 | 4_1:-72516764 | Msa0570360:intron |
| TCTGTCAATGGTTCAATTAA+AGG | 0.231131 | 4_1:+72515191 | None:intergenic |
| GAAGAGATTGAATTGGTTAA+TGG | 0.243682 | 4_1:-72518145 | Msa0570360:five_prime_UTR |
| ACATAACAGCTTTGAACTAT+TGG | 0.245284 | 4_1:-72517934 | Msa0570360:five_prime_UTR |
| AATGGTTTGCGTTGAGAATT+TGG | 0.249237 | 4_1:-72518127 | Msa0570360:five_prime_UTR |
| TGCTCGATGGCTGCTTGCTT+TGG | 0.257053 | 4_1:-72514571 | Msa0570360:CDS |
| GTTCTTCCCATATAGTAAAT+TGG | 0.257991 | 4_1:+72517624 | None:intergenic |
| CTATACACCAATTTACTATA+TGG | 0.263999 | 4_1:-72517631 | Msa0570360:CDS |
| CATTTATGAATAGGTGATTA+TGG | 0.271786 | 4_1:-72514325 | Msa0570360:three_prime_UTR |
| TAGTAACTTTGTTAACTTCT+TGG | 0.282200 | 4_1:+72517384 | None:intergenic |
| TAGTCAGAGGATGCTTCTTT+TGG | 0.297753 | 4_1:-72517437 | Msa0570360:CDS |
| ATGTCCAGGGTCCCGGTTGC+TGG | 0.306939 | 4_1:-72514385 | Msa0570360:three_prime_UTR |
| CAAATTGGGGAACTTGTAAA+TGG | 0.313309 | 4_1:-72515469 | Msa0570360:CDS |
| TTTGCTGGCTCTGTAAATTC+AGG | 0.350309 | 4_1:-72516445 | Msa0570360:intron |
| GCATGACTTCTCAAGATTAT+AGG | 0.355362 | 4_1:+72515151 | None:intergenic |
| AAATTGCAGGGATTGTATAT+TGG | 0.363352 | 4_1:-72516496 | Msa0570360:intron |
| AGTTAACAAAGTTACTAATA+AGG | 0.364066 | 4_1:-72517378 | Msa0570360:intron |
| GTGTCGTTTAAAGCTGTTAC+AGG | 0.364560 | 4_1:-72516643 | Msa0570360:CDS |
| TGCACAACTTTGCCAGCAAC+CGG | 0.364908 | 4_1:+72514373 | None:intergenic |
| AAAGTTTACTCAAATCTCTT+AGG | 0.373662 | 4_1:+72514532 | None:intergenic |
| GCTCGATGGCTGCTTGCTTT+GGG | 0.374474 | 4_1:-72514570 | Msa0570360:CDS |
| GATTACCTCTTTCTCGTACT+TGG | 0.376739 | 4_1:+72517970 | None:intergenic |
| AACGTTAACACTTGATAAGT+TGG | 0.378769 | 4_1:+72514419 | None:intergenic |
| TGTTCTATAGACAAACTAAT+TGG | 0.379987 | 4_1:+72517711 | None:intergenic |
| TGAAATGAAGTTAAATAATC+AGG | 0.391737 | 4_1:-72517564 | Msa0570360:intron |
| CATATAGTAAATTGGTGTAT+AGG | 0.396079 | 4_1:+72517632 | None:intergenic |
| ATAACTCCCCATTTATGAAT+AGG | 0.399336 | 4_1:-72514334 | Msa0570360:three_prime_UTR |
| TCATGCAAAATAGTTTGAAA+TGG | 0.402834 | 4_1:+72515434 | None:intergenic |
| GCATGATTGGAGCTGGCAAT+TGG | 0.404097 | 4_1:-72518167 | None:intergenic |
| ATTGTATATTGGTGGTGGAT+TGG | 0.406379 | 4_1:-72516485 | Msa0570360:CDS |
| ATAATCACCTATTCATAAAT+GGG | 0.406860 | 4_1:+72514327 | None:intergenic |
| TTTGTTTCCTCAAGAAATAT+CGG | 0.409722 | 4_1:-72517665 | Msa0570360:CDS |
| AGGTGTTACCTTTAGAAGTT+CGG | 0.411150 | 4_1:+72515312 | None:intergenic |
| ATATCAGTGATATACAAATT+GGG | 0.413722 | 4_1:-72515483 | Msa0570360:CDS |
| TAAGAGATTTGAGTAAACTT+TGG | 0.417661 | 4_1:-72514530 | Msa0570360:CDS |
| CTGTCAATGGTTCAATTAAA+GGG | 0.420015 | 4_1:+72515192 | None:intergenic |
| TCGCCCCTCCGAACTTCTAA+AGG | 0.427385 | 4_1:-72515320 | Msa0570360:intron |
| GCAATTGGAAGAGATTGAAT+TGG | 0.439614 | 4_1:-72518152 | Msa0570360:five_prime_UTR |
| AACCGTTGTTCCTCTGTCAA+TGG | 0.441867 | 4_1:+72515179 | None:intergenic |
| TGTTGTGCTCTTTCTATGAT+CGG | 0.445506 | 4_1:-72517896 | Msa0570360:intron |
| ACGTTAACACTTGATAAGTT+GGG | 0.466231 | 4_1:+72514420 | None:intergenic |
| TATACACCAATTTACTATAT+GGG | 0.471035 | 4_1:-72517630 | Msa0570360:CDS |
| TAGCTCCATGACCATGATGA+TGG | 0.474919 | 4_1:-72514443 | Msa0570360:three_prime_UTR |
| AGATGCCCTTTCACAAGGTA+TGG | 0.480625 | 4_1:-72515117 | Msa0570360:CDS |
| TTTGCCAGCAACCGGGACCC+TGG | 0.481335 | 4_1:+72514381 | None:intergenic |
| AGACCTAGATCATACAAAAC+AGG | 0.484213 | 4_1:-72516613 | Msa0570360:intron |
| AAAGGGCATCTTCTGCTTGT+CGG | 0.484492 | 4_1:+72515129 | None:intergenic |
| CAGGGATTGTATATTGGTGG+TGG | 0.489623 | 4_1:-72516490 | Msa0570360:CDS |
| GCTGAAGAATAAACTTGTCT+AGG | 0.490026 | 4_1:+72514222 | None:intergenic |
| CTCTTGCATGAAGCCTATGC+AGG | 0.497130 | 4_1:+72514489 | None:intergenic |
| TAACTTTGTTAACTTCTTGG+TGG | 0.500498 | 4_1:+72517387 | None:intergenic |
| AAGAACCAAGTACGAGAAAG+AGG | 0.504303 | 4_1:-72517975 | Msa0570360:five_prime_UTR |
| AGAGCTAAACAGACAAATGT+TGG | 0.504425 | 4_1:-72515530 | Msa0570360:CDS |
| CTTGTTGACACAGTTGCAGC+AGG | 0.514923 | 4_1:-72515077 | Msa0570360:CDS |
| TGCAGGTTCACGAGGACGAT+TGG | 0.523856 | 4_1:+72514506 | None:intergenic |
| TGGTTCTTCCTCGATTTCCT+CGG | 0.527196 | 4_1:+72517990 | None:intergenic |
| TCGTCCTCGTGAACCTGCAT+AGG | 0.532638 | 4_1:-72514502 | Msa0570360:exon |
| GATAAGTTGGGCCATCATCA+TGG | 0.542588 | 4_1:+72514432 | None:intergenic |
| ATGTGGAAAACAACAGCTGA+AGG | 0.550259 | 4_1:-72515367 | Msa0570360:CDS |
| ACAAATTGAGAAGATGATGA+AGG | 0.553463 | 4_1:+72517683 | None:intergenic |
| AGACAAATGTTGGAATTGAA+AGG | 0.555362 | 4_1:-72515520 | Msa0570360:CDS |
| TTGGGCCATCATCATGGTCA+TGG | 0.557734 | 4_1:+72514438 | None:intergenic |
| ACAGGCTGATCATCTTCGAC+AGG | 0.558370 | 4_1:-72514637 | Msa0570360:intron |
| GAAGAACATTTCAAGAGTAA+TGG | 0.562707 | 4_1:-72517608 | Msa0570360:CDS |
| AGCAACCGGGACCCTGGACA+TGG | 0.576518 | 4_1:+72514387 | None:intergenic |
| TATCAGTGATATACAAATTG+GGG | 0.581840 | 4_1:-72515482 | Msa0570360:CDS |
| ATATACACCGATATTTCTTG+AGG | 0.591644 | 4_1:+72517658 | None:intergenic |
| TTGCAGGGATTGTATATTGG+TGG | 0.592067 | 4_1:-72516493 | Msa0570360:intron |
| TAAGATGGAGTATGAACACT+GGG | 0.600728 | 4_1:-72515557 | Msa0570360:CDS |
| TGTTACCTTTAGAAGTTCGG+AGG | 0.601165 | 4_1:+72515315 | None:intergenic |
| TTAAGATGGAGTATGAACAC+TGG | 0.603260 | 4_1:-72515558 | Msa0570360:CDS |
| ATTAGTTTGTCTATAGAACA+TGG | 0.607742 | 4_1:-72517708 | Msa0570360:exon |
| AACCATTGACAGAGGAACAA+CGG | 0.614266 | 4_1:-72515181 | Msa0570360:CDS |
| TTTATCTTCCGAGGAAATCG+AGG | 0.616021 | 4_1:-72517998 | Msa0570360:five_prime_UTR |
| GTTTGAAATGGTGATTCATG+AGG | 0.617184 | 4_1:+72515446 | None:intergenic |
| CTGTACGTCAAACTGCTCGA+TGG | 0.618911 | 4_1:-72514584 | Msa0570360:CDS |
| GTTACCTTTAGAAGTTCGGA+GGG | 0.619777 | 4_1:+72515316 | None:intergenic |
| GCAGAAGATGCCCTTTCACA+AGG | 0.620831 | 4_1:-72515122 | Msa0570360:CDS |
| GCACAACTTTGCCAGCAACC+GGG | 0.621258 | 4_1:+72514374 | None:intergenic |
| TTTAATTGAACCATTGACAG+AGG | 0.625048 | 4_1:-72515189 | Msa0570360:CDS |
| TCTATGTTATCACTGGCATG+TGG | 0.630097 | 4_1:-72515384 | Msa0570360:CDS |
| GAAGCCTATGCAGGTTCACG+AGG | 0.639562 | 4_1:+72514498 | None:intergenic |
| TAATCACCTATTCATAAATG+GGG | 0.647734 | 4_1:+72514328 | None:intergenic |
| TGTGGAAAACAACAGCTGAA+GGG | 0.647786 | 4_1:-72515366 | Msa0570360:CDS |
| ACGTCTCGCACAAAATCGAG+AGG | 0.680873 | 4_1:-72516794 | Msa0570360:CDS |
| GATGGAGTATGAACACTGGG+TGG | 0.682481 | 4_1:-72515554 | Msa0570360:CDS |
| TTACCTTTAGAAGTTCGGAG+GGG | 0.696201 | 4_1:+72515317 | None:intergenic |
| TTGATGGTGAGTCACCAAGG+TGG | 0.728144 | 4_1:-72518093 | Msa0570360:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTATAAATTTAGTAAACT+TGG | + | chr4_1:72514856-72514875 | None:intergenic | 15.0% |
| !! | TCATTAACAAAATATCAAAA+TGG | + | chr4_1:72515350-72515369 | None:intergenic | 15.0% |
| !!! | TTTTGATATTTTGTTAATGA+AGG | - | chr4_1:72515350-72515369 | Msa0570360:CDS | 15.0% |
| !!! | TAAGTTTTTATAAAGCAAAA+AGG | + | chr4_1:72516188-72516207 | None:intergenic | 15.0% |
| !!! | TTGATATATAATATTAGCTT+TGG | - | chr4_1:72516711-72516730 | Msa0570360:intron | 15.0% |
| !!! | TGATATATAATATTAGCTTT+GGG | - | chr4_1:72516712-72516731 | Msa0570360:intron | 15.0% |
| !!! | TTTTAAATATTTATCTTCCG+AGG | - | chr4_1:72514380-72514399 | Msa0570360:three_prime_UTR | 20.0% |
| !! | TGATTGTTTATATGACTAAA+TGG | - | chr4_1:72514648-72514667 | Msa0570360:intron | 20.0% |
| !! | TATACACCAATTTACTATAT+GGG | - | chr4_1:72514757-72514776 | Msa0570360:intron | 20.0% |
| !!! | TGATTATTTAACTTCATTTC+AGG | + | chr4_1:72514824-72514843 | None:intergenic | 20.0% |
| !! | TGAAATGAAGTTAAATAATC+AGG | - | chr4_1:72514823-72514842 | Msa0570360:intron | 20.0% |
| !! | AGTTAACAAAGTTACTAATA+AGG | - | chr4_1:72515009-72515028 | Msa0570360:intron | 20.0% |
| !!! | GTTTGTTTGTTATTAAATTC+TGG | - | chr4_1:72515964-72515983 | Msa0570360:intron | 20.0% |
| !!! | TTACTGCAGATAATATATTT+TGG | - | chr4_1:72516205-72516224 | Msa0570360:intron | 20.0% |
| !! | ACAAAAGCAACATTAATTAA+AGG | + | chr4_1:72516340-72516359 | None:intergenic | 20.0% |
| !! | AGTAACAAAATTTATTAGAG+AGG | - | chr4_1:72516478-72516497 | Msa0570360:CDS | 20.0% |
| !! | GTAACAAAATTTATTAGAGA+GGG | - | chr4_1:72516479-72516498 | Msa0570360:CDS | 20.0% |
| !!! | GAAATTTTGGAAGAAATTAT+TGG | + | chr4_1:72516561-72516580 | None:intergenic | 20.0% |
| !!! | TCTATTCTAAAACTAGTTTT+TGG | - | chr4_1:72516770-72516789 | Msa0570360:CDS | 20.0% |
| !!! | AGTTGTTATTTCTGTAAATT+AGG | + | chr4_1:72516808-72516827 | None:intergenic | 20.0% |
| !!! | AGAAATAACAACTTTTAAGA+TGG | - | chr4_1:72516815-72516834 | Msa0570360:intron | 20.0% |
| !! | ATATCAGTGATATACAAATT+GGG | - | chr4_1:72516904-72516923 | Msa0570360:intron | 20.0% |
| !! | NNNNNNNNNNTATCCATCTG+TGG | + | chr4_1:72517361-72517380 | None:intergenic | 20.0% |
| !! | NNNNNNNNNTTGCAATAGAG+AGG | - | chr4_1:72517462-72517481 | Msa0570360:intron | 20.0% |
| !! | AATATATAACATACATTACC+TGG | + | chr4_1:72517514-72517533 | None:intergenic | 20.0% |
| !! | TGTATAATTTAGATTAGATG+AGG | - | chr4_1:72517538-72517557 | Msa0570360:intron | 20.0% |
| !! | TTGACAATAATAAGCTTAAT+TGG | + | chr4_1:72517730-72517749 | None:intergenic | 20.0% |
| !! | ATAATCACCTATTCATAAAT+GGG | + | chr4_1:72518063-72518082 | None:intergenic | 20.0% |
| !!! | TTTGGTTCTGTATTTTTTGA+TGG | - | chr4_1:72514278-72514297 | Msa0570360:three_prime_UTR | 25.0% |
| ! | TGTAAAAGCAAAAGTCAAAT+AGG | + | chr4_1:72514586-72514605 | None:intergenic | 25.0% |
| !!! | ATTTGACTTTTGCTTTTACA+AGG | - | chr4_1:72514586-72514605 | Msa0570360:CDS | 25.0% |
| ! | TGTTCTATAGACAAACTAAT+TGG | + | chr4_1:72514679-72514698 | None:intergenic | 25.0% |
| !!! | ATTAGTTTGTCTATAGAACA+TGG | - | chr4_1:72514679-72514698 | Msa0570360:intron | 25.0% |
| ! | TTTGTTTCCTCAAGAAATAT+CGG | - | chr4_1:72514722-72514741 | Msa0570360:intron | 25.0% |
| ! | CATATAGTAAATTGGTGTAT+AGG | + | chr4_1:72514758-72514777 | None:intergenic | 25.0% |
| ! | CTATACACCAATTTACTATA+TGG | - | chr4_1:72514756-72514775 | Msa0570360:intron | 25.0% |
| ! | TAGTAACTTTGTTAACTTCT+TGG | + | chr4_1:72515006-72515025 | None:intergenic | 25.0% |
| ! | GTATCAAATTGAACTTAACA+TGG | + | chr4_1:72515230-72515249 | None:intergenic | 25.0% |
| !! | TCAATCACATTAATCCATTT+TGG | - | chr4_1:72515271-72515290 | Msa0570360:intron | 25.0% |
| ! | AATTATTGCATTAGTCCTTT+CGG | + | chr4_1:72515311-72515330 | None:intergenic | 25.0% |
| !!! | TGCCTTTTTTTATGCTTATA+AGG | - | chr4_1:72515547-72515566 | Msa0570360:CDS | 25.0% |
| ! | CACCTTATAAGCATAAAAAA+AGG | + | chr4_1:72515552-72515571 | None:intergenic | 25.0% |
| ! | AAATCAAATGCTTGTTTGTT+TGG | + | chr4_1:72515684-72515703 | None:intergenic | 25.0% |
| ! | GGATTGGATTGTAATAATTT+AGG | - | chr4_1:72515918-72515937 | Msa0570360:intron | 25.0% |
| !!! | TGTAATAATTTAGGTTTTGC+TGG | - | chr4_1:72515927-72515946 | Msa0570360:intron | 25.0% |
| ! | ACAAAAAGTGATTTCATCAT+AGG | + | chr4_1:72516033-72516052 | None:intergenic | 25.0% |
| ! | AAACATTGAGAGAATTCTTT+AGG | - | chr4_1:72516126-72516145 | Msa0570360:intron | 25.0% |
| ! | ACATTAATTAAAGGAAAGGA+GGG | + | chr4_1:72516331-72516350 | None:intergenic | 25.0% |
| ! | AACATTAATTAAAGGAAAGG+AGG | + | chr4_1:72516332-72516351 | None:intergenic | 25.0% |
| ! | AGCAACATTAATTAAAGGAA+AGG | + | chr4_1:72516335-72516354 | None:intergenic | 25.0% |
| ! | CATATCAGTGATATACAAAT+TGG | - | chr4_1:72516903-72516922 | Msa0570360:intron | 25.0% |
| ! | TATCAGTGATATACAAATTG+GGG | - | chr4_1:72516905-72516924 | Msa0570360:intron | 25.0% |
| ! | TCATGCAAAATAGTTTGAAA+TGG | + | chr4_1:72516956-72516975 | None:intergenic | 25.0% |
| !! | TTCTGTTGTCATATTTCTAA+AGG | - | chr4_1:72517132-72517151 | Msa0570360:intron | 25.0% |
| ! | CACAAATTACCACATTAAAA+AGG | - | chr4_1:72517678-72517697 | Msa0570360:CDS | 25.0% |
| ! | TAAGCTTATTATTGTCAAAC+AGG | - | chr4_1:72517732-72517751 | Msa0570360:intron | 25.0% |
| ! | AAAGTTTACTCAAATCTCTT+AGG | + | chr4_1:72517858-72517877 | None:intergenic | 25.0% |
| ! | TAAGAGATTTGAGTAAACTT+TGG | - | chr4_1:72517857-72517876 | Msa0570360:intron | 25.0% |
| ! | TTAAAAAAAAACCATGTCCA+GGG | - | chr4_1:72517989-72518008 | Msa0570360:five_prime_UTR | 25.0% |
| ! | TAATCACCTATTCATAAATG+GGG | + | chr4_1:72518062-72518081 | None:intergenic | 25.0% |
| ! | CATAATCACCTATTCATAAA+TGG | + | chr4_1:72518064-72518083 | None:intergenic | 25.0% |
| ! | CATTTATGAATAGGTGATTA+TGG | - | chr4_1:72518062-72518081 | Msa0570360:five_prime_UTR | 25.0% |
| GAAGAGATTGAATTGGTTAA+TGG | - | chr4_1:72514242-72514261 | Msa0570360:three_prime_UTR | 30.0% | |
| !! | ACATAACAGCTTTGAACTAT+TGG | - | chr4_1:72514453-72514472 | Msa0570360:three_prime_UTR | 30.0% |
| !!! | CAAGGCATTTTATTGATTCT+TGG | - | chr4_1:72514604-72514623 | Msa0570360:CDS | 30.0% |
| TGTTTATATGACTAAATGGC+AGG | - | chr4_1:72514652-72514671 | Msa0570360:intron | 30.0% | |
| ACAAATTGAGAAGATGATGA+AGG | + | chr4_1:72514707-72514726 | None:intergenic | 30.0% | |
| ATATACACCGATATTTCTTG+AGG | + | chr4_1:72514732-72514751 | None:intergenic | 30.0% | |
| GTTCTTCCCATATAGTAAAT+TGG | + | chr4_1:72514766-72514785 | None:intergenic | 30.0% | |
| GAAGAACATTTCAAGAGTAA+TGG | - | chr4_1:72514779-72514798 | Msa0570360:intron | 30.0% | |
| !!! | GATGCTTCTTTTGGAATATT+GGG | - | chr4_1:72514959-72514978 | Msa0570360:intron | 30.0% |
| TAACTTTGTTAACTTCTTGG+TGG | + | chr4_1:72515003-72515022 | None:intergenic | 30.0% | |
| ! | TGGGTTGAACAAAATTAATG+TGG | + | chr4_1:72515143-72515162 | None:intergenic | 30.0% |
| TCCATACATGTTTGATATGA+CGG | + | chr4_1:72515166-72515185 | None:intergenic | 30.0% | |
| ! | ATTGGTCAACTTTTCCAAAA+TGG | + | chr4_1:72515288-72515307 | None:intergenic | 30.0% |
| ! | GAAATACTGATTGAGCAATT+CGG | + | chr4_1:72515378-72515397 | None:intergenic | 30.0% |
| !!! | AGCATTTTAGAACCACATTT+TGG | - | chr4_1:72515465-72515484 | Msa0570360:CDS | 30.0% |
| TAAGAGTCGTTTGAAGAAAA+AGG | - | chr4_1:72515623-72515642 | Msa0570360:intron | 30.0% | |
| ! | TTACCTGTTTTGTATGATCT+AGG | + | chr4_1:72515780-72515799 | None:intergenic | 30.0% |
| AAATTGCAGGGATTGTATAT+TGG | - | chr4_1:72515891-72515910 | Msa0570360:intron | 30.0% | |
| AACCTACAAAATCAACTACA+AGG | - | chr4_1:72516095-72516114 | Msa0570360:intron | 30.0% | |
| ACCTACAAAATCAACTACAA+GGG | - | chr4_1:72516096-72516115 | Msa0570360:intron | 30.0% | |
| !! | CTGCAGATAATATATTTTGG+TGG | - | chr4_1:72516208-72516227 | Msa0570360:intron | 30.0% |
| !!! | CAGATAATATATTTTGGTGG+TGG | - | chr4_1:72516211-72516230 | Msa0570360:intron | 30.0% |
| TTAATGCAGAGAGAAATGAT+TGG | - | chr4_1:72516443-72516462 | Msa0570360:intron | 30.0% | |
| AGAGAGAAATGATTGGAATA+AGG | - | chr4_1:72516450-72516469 | Msa0570360:CDS | 30.0% | |
| !!! | CTACTACTGTGGAAATTTTT+TGG | - | chr4_1:72516504-72516523 | Msa0570360:intron | 30.0% |
| ! | TTCCAAAATTTCAAGTAAGC+TGG | - | chr4_1:72516569-72516588 | Msa0570360:intron | 30.0% |
| TTAGACACTTCATTCTATTC+TGG | - | chr4_1:72516688-72516707 | Msa0570360:intron | 30.0% | |
| GAATAGAGTTCAATACAAGA+AGG | + | chr4_1:72516757-72516776 | None:intergenic | 30.0% | |
| AGACAAATGTTGGAATTGAA+AGG | - | chr4_1:72516867-72516886 | Msa0570360:intron | 30.0% | |
| ! | GATGTTTTCTATGTTATCAC+TGG | - | chr4_1:72516996-72517015 | Msa0570360:intron | 30.0% |
| ! | GTTGATCAAGTATATCGATT+AGG | + | chr4_1:72517098-72517117 | None:intergenic | 30.0% |
| ATCGATATACTTGATCAACT+TGG | - | chr4_1:72517099-72517118 | Msa0570360:intron | 30.0% | |
| TCGATATACTTGATCAACTT+GGG | - | chr4_1:72517100-72517119 | Msa0570360:intron | 30.0% | |
| CTGTCAATGGTTCAATTAAA+GGG | + | chr4_1:72517198-72517217 | None:intergenic | 30.0% | |
| TCTGTCAATGGTTCAATTAA+AGG | + | chr4_1:72517199-72517218 | None:intergenic | 30.0% | |
| TTTAATTGAACCATTGACAG+AGG | - | chr4_1:72517198-72517217 | Msa0570360:intron | 30.0% | |
| ! | TTTTTCCATACCTTGTGAAA+GGG | + | chr4_1:72517278-72517297 | None:intergenic | 30.0% |
| TAAAACTTATACTCTTGCCA+TGG | + | chr4_1:72517621-72517640 | None:intergenic | 30.0% | |
| !! | AGTTTTATCAGAAGTATGCA+TGG | - | chr4_1:72517634-72517653 | Msa0570360:CDS | 30.0% |
| ! | TGTGGTAATTTGTGTGTTAA+TGG | + | chr4_1:72517672-72517691 | None:intergenic | 30.0% |
| ! | CTAGTTCAACCTTTTTAATG+TGG | + | chr4_1:72517690-72517709 | None:intergenic | 30.0% |
| CACATTAAAAAGGTTGAACT+AGG | - | chr4_1:72517688-72517707 | Msa0570360:CDS | 30.0% | |
| ACGTTAACACTTGATAAGTT+GGG | + | chr4_1:72517970-72517989 | None:intergenic | 30.0% | |
| AACGTTAACACTTGATAAGT+TGG | + | chr4_1:72517971-72517990 | None:intergenic | 30.0% | |
| GTTAAAAAAAAACCATGTCC+AGG | - | chr4_1:72517988-72518007 | Msa0570360:five_prime_UTR | 30.0% | |
| ATAACTCCCCATTTATGAAT+AGG | - | chr4_1:72518053-72518072 | Msa0570360:five_prime_UTR | 30.0% | |
| GCAATTGGAAGAGATTGAAT+TGG | - | chr4_1:72514235-72514254 | Msa0570360:three_prime_UTR | 35.0% | |
| ! | AATGGTTTGCGTTGAGAATT+TGG | - | chr4_1:72514260-72514279 | Msa0570360:three_prime_UTR | 35.0% |
| TGTTGTGCTCTTTCTATGAT+CGG | - | chr4_1:72514491-72514510 | Msa0570360:exon | 35.0% | |
| !! | TATTGATTCTTGGCAGTTCA+TGG | - | chr4_1:72514614-72514633 | Msa0570360:CDS | 35.0% |
| TGCTAAATACCTATAGTCAG+AGG | - | chr4_1:72514937-72514956 | Msa0570360:intron | 35.0% | |
| !!! | GGATGCTTCTTTTGGAATAT+TGG | - | chr4_1:72514958-72514977 | Msa0570360:intron | 35.0% |
| ! | TTGTCGCTTCAACATAATCA+AGG | - | chr4_1:72515115-72515134 | Msa0570360:CDS | 35.0% |
| TACATGTTTGATATGACGGT+GGG | + | chr4_1:72515162-72515181 | None:intergenic | 35.0% | |
| ATACATGTTTGATATGACGG+TGG | + | chr4_1:72515163-72515182 | None:intergenic | 35.0% | |
| ACCGTCATATCAAACATGTA+TGG | - | chr4_1:72515162-72515181 | Msa0570360:CDS | 35.0% | |
| TTGAGGCATAAGGAAAGAAT+GGG | + | chr4_1:72515423-72515442 | None:intergenic | 35.0% | |
| ! | TTTGAGGCATAAGGAAAGAA+TGG | + | chr4_1:72515424-72515443 | None:intergenic | 35.0% |
| ! | TCTACAAAGTTTGAGGCATA+AGG | + | chr4_1:72515433-72515452 | None:intergenic | 35.0% |
| ATGTGACTCTACAAAGTTTG+AGG | + | chr4_1:72515440-72515459 | None:intergenic | 35.0% | |
| ACATCCAAAATTTGGAAGCA+GGG | + | chr4_1:72515521-72515540 | None:intergenic | 35.0% | |
| GTCGTTTGAAGAAAAAGGTT+TGG | - | chr4_1:72515628-72515647 | Msa0570360:intron | 35.0% | |
| GATTTCTGACGTTTCATAAC+AGG | - | chr4_1:72515699-72515718 | Msa0570360:intron | 35.0% | |
| AGACCTAGATCATACAAAAC+AGG | - | chr4_1:72515774-72515793 | Msa0570360:intron | 35.0% | |
| CATCAAGAGATTGACAAATG+AGG | + | chr4_1:72515866-72515885 | None:intergenic | 35.0% | |
| TCTTGATGCAACAAAATTGC+AGG | - | chr4_1:72515878-72515897 | Msa0570360:intron | 35.0% | |
| CTTGATGCAACAAAATTGCA+GGG | - | chr4_1:72515879-72515898 | Msa0570360:intron | 35.0% | |
| !! | ATTGTATATTGGTGGTGGAT+TGG | - | chr4_1:72515902-72515921 | Msa0570360:intron | 35.0% |
| TGTCACTGCTCTTATAAATG+TGG | - | chr4_1:72516002-72516021 | Msa0570360:intron | 35.0% | |
| GTCACTGCTCTTATAAATGT+GGG | - | chr4_1:72516003-72516022 | Msa0570360:intron | 35.0% | |
| ! | TTTGAACCTTTTTGCATGCA+TGG | - | chr4_1:72516162-72516181 | Msa0570360:intron | 35.0% |
| AATAGAATTTGAGTAGCTGC+TGG | + | chr4_1:72516276-72516295 | None:intergenic | 35.0% | |
| TGGATTCAGAGTTTCAAAGT+TGG | + | chr4_1:72516541-72516560 | None:intergenic | 35.0% | |
| ! | AGCCAGCTTACTTGAAATTT+TGG | + | chr4_1:72516574-72516593 | None:intergenic | 35.0% |
| CAAGAAGGAAAACATACTCA+AGG | + | chr4_1:72516742-72516761 | None:intergenic | 35.0% | |
| TTAAGATGGAGTATGAACAC+TGG | - | chr4_1:72516829-72516848 | Msa0570360:intron | 35.0% | |
| TAAGATGGAGTATGAACACT+GGG | - | chr4_1:72516830-72516849 | Msa0570360:intron | 35.0% | |
| AGAGCTAAACAGACAAATGT+TGG | - | chr4_1:72516857-72516876 | Msa0570360:intron | 35.0% | |
| CAAATTGGGGAACTTGTAAA+TGG | - | chr4_1:72516918-72516937 | Msa0570360:intron | 35.0% | |
| ! | GTTTGAAATGGTGATTCATG+AGG | + | chr4_1:72516944-72516963 | None:intergenic | 35.0% |
| ! | AGGTGTTACCTTTAGAAGTT+CGG | + | chr4_1:72517078-72517097 | None:intergenic | 35.0% |
| CGATATACTTGATCAACTTG+GGG | - | chr4_1:72517101-72517120 | Msa0570360:intron | 35.0% | |
| TGTATGTCTGTGAGAATTGT+AGG | - | chr4_1:72517165-72517184 | Msa0570360:intron | 35.0% | |
| ! | TCTGTGAGAATTGTAGGTTT+TGG | - | chr4_1:72517171-72517190 | Msa0570360:intron | 35.0% |
| GCATGACTTCTCAAGATTAT+AGG | + | chr4_1:72517239-72517258 | None:intergenic | 35.0% | |
| ! | GTTTTTCCATACCTTGTGAA+AGG | + | chr4_1:72517279-72517298 | None:intergenic | 35.0% |
| ACAAGGTATGGAAAAACTAC+AGG | - | chr4_1:72517282-72517301 | Msa0570360:intron | 35.0% | |
| CAAGGTATGGAAAAACTACA+GGG | - | chr4_1:72517283-72517302 | Msa0570360:intron | 35.0% | |
| !!! | TTTTTGATGGTGAGTCACCA+AGG | - | chr4_1:72514291-72514310 | Msa0570360:three_prime_UTR | 40.0% |
| TTTATCTTCCGAGGAAATCG+AGG | - | chr4_1:72514389-72514408 | Msa0570360:three_prime_UTR | 40.0% | |
| AAGAACCAAGTACGAGAAAG+AGG | - | chr4_1:72514412-72514431 | Msa0570360:three_prime_UTR | 40.0% | |
| GATTACCTCTTTCTCGTACT+TGG | + | chr4_1:72514420-72514439 | None:intergenic | 40.0% | |
| !! | AAGAAGCATCCTCTGACTAT+AGG | + | chr4_1:72514949-72514968 | None:intergenic | 40.0% |
| ! | TAGTCAGAGGATGCTTCTTT+TGG | - | chr4_1:72514950-72514969 | Msa0570360:intron | 40.0% |
| AAGATTGTGTTGCACTTGCT+TGG | - | chr4_1:72515033-72515052 | Msa0570360:intron | 40.0% | |
| ! | TGTATGGACTATGTTCTACG+CGG | - | chr4_1:72515178-72515197 | Msa0570360:CDS | 40.0% |
| CACATGCAGTAACTATCTAG+GGG | + | chr4_1:72515207-72515226 | None:intergenic | 40.0% | |
| GCACATGCAGTAACTATCTA+GGG | + | chr4_1:72515208-72515227 | None:intergenic | 40.0% | |
| GAAAAGTTGACCAATCCGAA+AGG | - | chr4_1:72515293-72515312 | Msa0570360:intron | 40.0% | |
| TTGCATTAGTCCTTTCGGAT+TGG | + | chr4_1:72515306-72515325 | None:intergenic | 40.0% | |
| TGCAAAGTGAGTCCAAAATG+TGG | + | chr4_1:72515480-72515499 | None:intergenic | 40.0% | |
| CATCCAAAATTTGGAAGCAG+GGG | + | chr4_1:72515520-72515539 | None:intergenic | 40.0% | |
| GACATCCAAAATTTGGAAGC+AGG | + | chr4_1:72515522-72515541 | None:intergenic | 40.0% | |
| ! | GCTTCCAAATTTTGGATGTC+TGG | - | chr4_1:72515522-72515541 | Msa0570360:CDS | 40.0% |
| CAAGCCAGACATCCAAAATT+TGG | + | chr4_1:72515529-72515548 | None:intergenic | 40.0% | |
| !! | GTGTCGTTTAAAGCTGTTAC+AGG | - | chr4_1:72515744-72515763 | Msa0570360:intron | 40.0% |
| TTGCAGGGATTGTATATTGG+TGG | - | chr4_1:72515894-72515913 | Msa0570360:intron | 40.0% | |
| !! | TTTGCTGGCTCTGTAAATTC+AGG | - | chr4_1:72515942-72515961 | Msa0570360:intron | 40.0% |
| !! | GCCCTTGTAGTTGATTTTGT+AGG | + | chr4_1:72516100-72516119 | None:intergenic | 40.0% |
| AAAAGGCCATGCATGCAAAA+AGG | + | chr4_1:72516171-72516190 | None:intergenic | 40.0% | |
| GAGTATCTGAATGTACAGTG+AGG | + | chr4_1:72516309-72516328 | None:intergenic | 40.0% | |
| TCTATGTTATCACTGGCATG+TGG | - | chr4_1:72517003-72517022 | Msa0570360:intron | 40.0% | |
| ATGTGGAAAACAACAGCTGA+AGG | - | chr4_1:72517020-72517039 | Msa0570360:intron | 40.0% | |
| TGTGGAAAACAACAGCTGAA+GGG | - | chr4_1:72517021-72517040 | Msa0570360:intron | 40.0% | |
| ! | GAAGGGTTTTTCTTGTGGAT+TGG | - | chr4_1:72517038-72517057 | Msa0570360:intron | 40.0% |
| ! | TTACCTTTAGAAGTTCGGAG+GGG | + | chr4_1:72517073-72517092 | None:intergenic | 40.0% |
| ! | GTTACCTTTAGAAGTTCGGA+GGG | + | chr4_1:72517074-72517093 | None:intergenic | 40.0% |
| ! | TGTTACCTTTAGAAGTTCGG+AGG | + | chr4_1:72517075-72517094 | None:intergenic | 40.0% |
| AACCATTGACAGAGGAACAA+CGG | - | chr4_1:72517206-72517225 | Msa0570360:intron | 40.0% | |
| AGGAACTTACATTCCACAGA+TGG | - | chr4_1:72517345-72517364 | Msa0570360:intron | 40.0% | |
| CTTGTCAATGTGTGACACAA+CGG | - | chr4_1:72517568-72517587 | Msa0570360:CDS | 40.0% | |
| TGGAAAACAATGCTGATCCA+TGG | - | chr4_1:72517601-72517620 | Msa0570360:CDS | 40.0% | |
| CTGAAAAAGACATGCCACCT+TGG | + | chr4_1:72514311-72514330 | None:intergenic | 45.0% | |
| TGGTTCTTCCTCGATTTCCT+CGG | + | chr4_1:72514400-72514419 | None:intergenic | 45.0% | |
| GTTGCACTTGCTTGGTATTG+CGG | - | chr4_1:72515041-72515060 | Msa0570360:intron | 45.0% | |
| ! | GTATGGACTATGTTCTACGC+GGG | - | chr4_1:72515179-72515198 | Msa0570360:CDS | 45.0% |
| ! | TATGGACTATGTTCTACGCG+GGG | - | chr4_1:72515180-72515199 | Msa0570360:CDS | 45.0% |
| GGCACATGCAGTAACTATCT+AGG | + | chr4_1:72515209-72515228 | None:intergenic | 45.0% | |
| CTCACTTTGCACTGCAGATT+AGG | - | chr4_1:72515489-72515508 | Msa0570360:CDS | 45.0% | |
| ACTTTGCACTGCAGATTAGG+AGG | - | chr4_1:72515492-72515511 | Msa0570360:CDS | 45.0% | |
| CTTTGCACTGCAGATTAGGA+GGG | - | chr4_1:72515493-72515512 | Msa0570360:CDS | 45.0% | |
| CAGGGATTGTATATTGGTGG+TGG | - | chr4_1:72515897-72515916 | Msa0570360:intron | 45.0% | |
| !! | TTTGGTGGTGGACCTAAACT+AGG | - | chr4_1:72516223-72516242 | Msa0570360:intron | 45.0% |
| !! | TTGGTGGTGGACCTAAACTA+GGG | - | chr4_1:72516224-72516243 | Msa0570360:intron | 45.0% |
| GGACCTAAACTAGGGCTTAT+TGG | - | chr4_1:72516232-72516251 | Msa0570360:intron | 45.0% | |
| AGGCCAATAAGCCCTAGTTT+AGG | + | chr4_1:72516238-72516257 | None:intergenic | 45.0% | |
| !! | TAGAGAGGGTACTACTACTG+TGG | - | chr4_1:72516493-72516512 | Msa0570360:intron | 45.0% |
| GCTGGCTATTATGTACCTAG+TGG | - | chr4_1:72516587-72516606 | Msa0570360:intron | 45.0% | |
| ! | CAGCTGAAGGGTTTTTCTTG+TGG | - | chr4_1:72517033-72517052 | Msa0570360:intron | 45.0% |
| !!! | GGGTTTTTCTTGTGGATTGG+AGG | - | chr4_1:72517041-72517060 | Msa0570360:intron | 45.0% |
| AACCGTTGTTCCTCTGTCAA+TGG | + | chr4_1:72517211-72517230 | None:intergenic | 45.0% | |
| !! | AAAGGGCATCTTCTGCTTGT+CGG | + | chr4_1:72517261-72517280 | None:intergenic | 45.0% |
| AGATGCCCTTTCACAAGGTA+TGG | - | chr4_1:72517270-72517289 | Msa0570360:intron | 45.0% | |
| CGTTGTGTCACACATTGACA+AGG | + | chr4_1:72517570-72517589 | None:intergenic | 45.0% | |
| GACACAACGGTTATGAGTTG+TGG | - | chr4_1:72517581-72517600 | Msa0570360:CDS | 45.0% | |
| TAGCTCCATGACCATGATGA+TGG | - | chr4_1:72517944-72517963 | Msa0570360:five_prime_UTR | 45.0% | |
| ! | GATAAGTTGGGCCATCATCA+TGG | + | chr4_1:72517958-72517977 | None:intergenic | 45.0% |
| !! | TTGATGGTGAGTCACCAAGG+TGG | - | chr4_1:72514294-72514313 | Msa0570360:three_prime_UTR | 50.0% |
| ! | GGTCCCCTGCTTCCAAATTT+TGG | - | chr4_1:72515514-72515533 | Msa0570360:CDS | 50.0% |
| ACGTCTCGCACAAAATCGAG+AGG | - | chr4_1:72515593-72515612 | Msa0570360:intron | 50.0% | |
| TTGTACACAGTGCTGCCACT+AGG | + | chr4_1:72516605-72516624 | None:intergenic | 50.0% | |
| GATGGAGTATGAACACTGGG+TGG | - | chr4_1:72516833-72516852 | Msa0570360:intron | 50.0% | |
| GCAGAAGATGCCCTTTCACA+AGG | - | chr4_1:72517265-72517284 | Msa0570360:intron | 50.0% | |
| CTTGTTGACACAGTTGCAGC+AGG | - | chr4_1:72517310-72517329 | Msa0570360:intron | 50.0% | |
| AATAGAGAGGCTGGAAGCTC+TGG | - | chr4_1:72517475-72517494 | Msa0570360:intron | 50.0% | |
| !! | TCTGGCTAGCTTTGTGAACC+AGG | - | chr4_1:72517493-72517512 | Msa0570360:intron | 50.0% |
| ACAGGCTGATCATCTTCGAC+AGG | - | chr4_1:72517750-72517769 | Msa0570360:intron | 50.0% | |
| CTGTACGTCAAACTGCTCGA+TGG | - | chr4_1:72517803-72517822 | Msa0570360:intron | 50.0% | |
| CTCTTGCATGAAGCCTATGC+AGG | + | chr4_1:72517901-72517920 | None:intergenic | 50.0% | |
| TTGGGCCATCATCATGGTCA+TGG | + | chr4_1:72517952-72517971 | None:intergenic | 50.0% | |
| AAAAACCATGTCCAGGGTCC+CGG | - | chr4_1:72517995-72518014 | Msa0570360:five_prime_UTR | 50.0% | |
| TGCACAACTTTGCCAGCAAC+CGG | + | chr4_1:72518017-72518036 | None:intergenic | 50.0% | |
| ! | GGCTTATTGGCCTCGCCATT+GGG | - | chr4_1:72516245-72516264 | Msa0570360:intron | 55.0% |
| ! | TAGCTGCTGGTCTAGCCCAA+TGG | + | chr4_1:72516263-72516282 | None:intergenic | 55.0% |
| TCGCCCCTCCGAACTTCTAA+AGG | - | chr4_1:72517067-72517086 | Msa0570360:intron | 55.0% | |
| GCAGCAGGACAACTCGTTGA+AGG | - | chr4_1:72517325-72517344 | Msa0570360:intron | 55.0% | |
| TGCTCGATGGCTGCTTGCTT+TGG | - | chr4_1:72517816-72517835 | Msa0570360:intron | 55.0% | |
| GCTCGATGGCTGCTTGCTTT+GGG | - | chr4_1:72517817-72517836 | Msa0570360:intron | 55.0% | |
| TGCAGGTTCACGAGGACGAT+TGG | + | chr4_1:72517884-72517903 | None:intergenic | 55.0% | |
| TCGTCCTCGTGAACCTGCAT+AGG | - | chr4_1:72517885-72517904 | Msa0570360:intron | 55.0% | |
| GAAGCCTATGCAGGTTCACG+AGG | + | chr4_1:72517892-72517911 | None:intergenic | 55.0% | |
| GCACAACTTTGCCAGCAACC+GGG | + | chr4_1:72518016-72518035 | None:intergenic | 55.0% | |
| ! | GGGCTTATTGGCCTCGCCAT+TGG | - | chr4_1:72516244-72516263 | Msa0570360:intron | 60.0% |
| ! | GCTGGTCTAGCCCAATGGCG+AGG | + | chr4_1:72516258-72516277 | None:intergenic | 65.0% |
| AGCAACCGGGACCCTGGACA+TGG | + | chr4_1:72518003-72518022 | None:intergenic | 65.0% | |
| ATGTCCAGGGTCCCGGTTGC+TGG | - | chr4_1:72518002-72518021 | Msa0570360:five_prime_UTR | 65.0% | |
| TTTGCCAGCAACCGGGACCC+TGG | + | chr4_1:72518009-72518028 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 72514231 | 72518178 | 72514231 | ID=Msa0570360;Name=Msa0570360 |
| chr4_1 | mRNA | 72514231 | 72518178 | 72514231 | ID=Msa0570360-mRNA-1;Parent=Msa0570360;Name=Msa0570360-mRNA-1;_AED=0.19;_eAED=0.19;_QI=306|0.87|0.88|1|0.87|0.77|9|272|333 |
| chr4_1 | exon | 72514231 | 72514655 | 72514231 | ID=Msa0570360-mRNA-1:exon:24839;Parent=Msa0570360-mRNA-1 |
| chr4_1 | exon | 72515070 | 72515222 | 72515070 | ID=Msa0570360-mRNA-1:exon:24838;Parent=Msa0570360-mRNA-1 |
| chr4_1 | exon | 72515321 | 72515592 | 72515321 | ID=Msa0570360-mRNA-1:exon:24837;Parent=Msa0570360-mRNA-1 |
| chr4_1 | exon | 72516446 | 72516509 | 72516446 | ID=Msa0570360-mRNA-1:exon:24836;Parent=Msa0570360-mRNA-1 |
| chr4_1 | exon | 72516614 | 72516688 | 72516614 | ID=Msa0570360-mRNA-1:exon:24835;Parent=Msa0570360-mRNA-1 |
| chr4_1 | exon | 72516765 | 72516824 | 72516765 | ID=Msa0570360-mRNA-1:exon:24834;Parent=Msa0570360-mRNA-1 |
| chr4_1 | exon | 72517379 | 72517456 | 72517379 | ID=Msa0570360-mRNA-1:exon:24833;Parent=Msa0570360-mRNA-1 |
| chr4_1 | exon | 72517565 | 72517735 | 72517565 | ID=Msa0570360-mRNA-1:exon:24832;Parent=Msa0570360-mRNA-1 |
| chr4_1 | exon | 72517897 | 72518178 | 72517897 | ID=Msa0570360-mRNA-1:exon:24831;Parent=Msa0570360-mRNA-1 |
| chr4_1 | five_prime_UTR | 72517897 | 72518178 | 72517897 | ID=Msa0570360-mRNA-1:five_prime_utr;Parent=Msa0570360-mRNA-1 |
| chr4_1 | five_prime_UTR | 72517712 | 72517735 | 72517712 | ID=Msa0570360-mRNA-1:five_prime_utr;Parent=Msa0570360-mRNA-1 |
| chr4_1 | CDS | 72517565 | 72517711 | 72517565 | ID=Msa0570360-mRNA-1:cds;Parent=Msa0570360-mRNA-1 |
| chr4_1 | CDS | 72517379 | 72517456 | 72517379 | ID=Msa0570360-mRNA-1:cds;Parent=Msa0570360-mRNA-1 |
| chr4_1 | CDS | 72516765 | 72516824 | 72516765 | ID=Msa0570360-mRNA-1:cds;Parent=Msa0570360-mRNA-1 |
| chr4_1 | CDS | 72516614 | 72516688 | 72516614 | ID=Msa0570360-mRNA-1:cds;Parent=Msa0570360-mRNA-1 |
| chr4_1 | CDS | 72516446 | 72516509 | 72516446 | ID=Msa0570360-mRNA-1:cds;Parent=Msa0570360-mRNA-1 |
| chr4_1 | CDS | 72515321 | 72515592 | 72515321 | ID=Msa0570360-mRNA-1:cds;Parent=Msa0570360-mRNA-1 |
| chr4_1 | CDS | 72515070 | 72515222 | 72515070 | ID=Msa0570360-mRNA-1:cds;Parent=Msa0570360-mRNA-1 |
| chr4_1 | CDS | 72514503 | 72514655 | 72514503 | ID=Msa0570360-mRNA-1:cds;Parent=Msa0570360-mRNA-1 |
| chr4_1 | three_prime_UTR | 72514231 | 72514502 | 72514231 | ID=Msa0570360-mRNA-1:three_prime_utr;Parent=Msa0570360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
