AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0572150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0572150 MtrunA17_Chr8g0387541 99.377 321 2 0 1 321 1 321 0.0 662
Msa0572150 MtrunA17_Chr1g0190121 79.114 316 64 2 1 315 1 315 0.0 540
Msa0572150 MtrunA17_Chr7g0274931 78.165 316 67 2 1 315 1 315 0.0 533
Msa0572150 MtrunA17_Chr5g0436061 78.431 306 66 0 1 306 17 322 0.0 523
Msa0572150 MtrunA17_Chr1g0186811 74.603 315 78 2 1 314 1 314 0.0 511
Msa0572150 MtrunA17_Chr1g0167751 75.161 310 75 2 1 309 1 309 2.51e-180 501
Msa0572150 MtrunA17_Chr7g0272371 72.500 320 79 3 1 318 5 317 1.49e-176 491
Msa0572150 MtrunA17_Chr8g0334361 77.163 289 65 1 6 294 4 291 3.34e-174 484
Msa0572150 MtrunA17_Chr8g0378521 46.128 297 150 3 6 301 9 296 2.66e-96 287
Msa0572150 MtrunA17_Chr7g0268381 47.826 276 142 2 27 301 27 301 1.42e-95 285
Msa0572150 MtrunA17_Chr5g0415261 48.679 265 134 2 27 290 20 283 1.20e-93 280
Msa0572150 MtrunA17_Chr8g0364041 48.302 265 135 2 27 290 20 283 1.31e-93 280
Msa0572150 MtrunA17_Chr5g0445011 44.948 287 154 2 27 312 17 300 4.95e-93 278
Msa0572150 MtrunA17_Chr1g0165341 40.777 309 171 5 8 314 2 300 1.37e-90 272
Msa0572150 MtrunA17_Chr2g0322121 50.000 272 122 5 23 280 660 931 7.55e-82 267
Msa0572150 MtrunA17_Chr4g0025471 45.603 307 151 6 3 293 643 949 3.60e-80 262
Msa0572150 MtrunA17_Chr3g0097231 41.812 287 156 5 3 283 168 449 7.09e-70 225
Msa0572150 MtrunA17_Chr2g0330311 41.053 285 155 7 3 280 195 473 3.16e-65 213
Msa0572150 MtrunA17_Chr2g0330331 40.138 289 161 7 2 283 32 315 1.03e-60 197
Msa0572150 MtrunA17_Chr1g0196211 47.222 180 85 5 109 279 2 180 1.02e-48 163
Msa0572150 MtrunA17_Chr8g0369981 30.145 345 172 11 4 283 74 414 6.11e-36 134
Msa0572150 MtrunA17_Chr1g0196221 46.296 108 50 2 9 108 528 635 3.61e-24 102
Msa0572150 MtrunA17_Chr2g0330011 36.975 119 65 4 32 141 232 349 3.60e-16 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0572150 AT1G64040.1 84.953 319 48 0 1 319 1 319 0.0 588
Msa0572150 AT4G11240.1 83.438 320 53 0 1 320 1 320 0.0 584
Msa0572150 AT2G29400.1 81.457 302 53 2 1 300 15 315 0.0 526
Msa0572150 AT2G39840.1 79.070 301 63 0 1 301 14 314 0.0 516
Msa0572150 AT5G59160.3 78.146 302 65 1 1 301 9 310 0.0 508
Msa0572150 AT5G59160.2 78.146 302 65 1 1 301 9 310 0.0 508
Msa0572150 AT5G59160.1 78.146 302 65 1 1 301 9 310 0.0 508
Msa0572150 AT3G46820.1 77.152 302 68 1 1 301 9 310 0.0 503
Msa0572150 AT5G43380.1 70.717 321 93 1 1 321 1 320 8.58e-176 490
Msa0572150 AT5G43380.2 71.519 316 89 1 1 316 1 315 4.06e-175 488
Msa0572150 AT5G43380.3 70.717 321 93 1 1 321 1 320 4.62e-175 488
Msa0572150 AT5G27840.1 75.338 296 70 1 1 296 9 301 9.55e-174 484
Msa0572150 AT5G27840.4 73.786 309 73 2 1 304 9 314 1.11e-173 484
Msa0572150 AT5G27840.2 75.338 296 70 1 1 296 9 301 2.10e-173 483
Msa0572150 AT5G27840.3 75.338 296 70 1 1 296 9 301 2.10e-173 483
Msa0572150 AT3G05580.1 76.014 296 68 1 1 296 9 301 6.15e-173 482
Msa0572150 AT3G05580.2 75.304 247 58 1 1 247 9 252 1.44e-140 398
Msa0572150 AT2G42500.1 47.138 297 147 3 6 301 14 301 5.80e-98 292
Msa0572150 AT3G58500.1 46.465 297 149 3 6 301 14 301 1.19e-96 288
Msa0572150 AT5G55260.1 46.739 276 146 1 27 301 17 292 7.16e-95 283
Msa0572150 AT1G10430.2 46.503 286 143 3 6 290 7 283 1.64e-94 283
Msa0572150 AT1G10430.1 46.503 286 143 3 6 290 7 283 1.64e-94 283
Msa0572150 AT1G59830.1 46.853 286 142 3 6 290 7 283 3.54e-94 282
Msa0572150 AT1G69960.1 47.547 265 137 2 27 290 21 284 4.01e-93 279
Msa0572150 AT4G26720.1 43.310 284 160 1 19 301 9 292 2.19e-92 277
Msa0572150 AT1G50370.1 40.777 309 171 5 8 314 2 300 1.09e-90 273
Msa0572150 AT3G19980.1 40.777 309 171 5 8 314 2 300 1.44e-90 273
Msa0572150 AT5G55260.2 40.694 317 146 2 27 301 17 333 1.73e-86 264
Msa0572150 AT1G59830.2 48.400 250 119 3 6 254 7 247 1.67e-83 253
Msa0572150 AT2G27210.2 50.000 272 122 5 23 280 666 937 1.82e-82 269
Msa0572150 AT2G27210.1 50.000 272 122 5 23 280 671 942 1.93e-82 269
Msa0572150 AT1G08420.2 49.632 272 123 5 23 280 677 948 1.39e-81 266
Msa0572150 AT1G08420.1 49.632 272 123 5 23 280 682 953 1.47e-81 266
Msa0572150 AT4G03080.1 45.364 302 147 7 9 293 530 830 1.37e-80 262
Msa0572150 AT2G42500.2 49.327 223 111 2 80 301 33 254 1.55e-76 235
Msa0572150 AT1G03445.2 45.756 271 130 7 27 282 476 744 9.25e-73 239
Msa0572150 AT1G03445.1 45.756 271 130 7 27 282 476 744 9.64e-73 239
Msa0572150 AT2G42810.1 40.702 285 157 5 2 280 170 448 7.96e-67 217
Msa0572150 AT2G42810.5 40.702 285 157 5 2 280 170 448 7.96e-67 217
Msa0572150 AT2G42810.4 40.702 285 157 5 2 280 170 448 7.96e-67 217
Msa0572150 AT2G42810.2 40.702 285 157 5 2 280 224 502 2.17e-66 218
Msa0572150 AT2G42810.3 40.702 285 157 5 2 280 223 501 2.41e-66 217
Msa0572150 AT2G42500.4 45.238 168 80 3 6 169 14 173 2.40e-44 150
Msa0572150 AT2G42500.5 44.571 175 83 4 6 176 14 178 3.36e-44 149
Msa0572150 AT2G42500.3 46.250 160 74 3 6 161 14 165 1.28e-43 148
Msa0572150 AT5G63870.1 30.303 264 134 7 56 269 79 342 5.09e-31 121
Msa0572150 AT5G63870.2 30.303 264 134 7 56 269 79 342 5.09e-31 121
Msa0572150 AT5G63870.3 30.000 220 119 5 56 240 79 298 2.30e-25 103
Msa0572150 AT1G48120.1 28.477 302 144 8 34 269 630 925 5.61e-25 106
Msa0572150 AT5G10900.2 29.885 261 143 10 56 278 225 483 1.19e-20 92.8
Msa0572150 AT5G10900.3 29.885 261 143 10 56 278 225 483 1.47e-20 92.8
Msa0572150 AT5G10900.1 29.502 261 144 10 56 278 225 483 1.51e-20 92.8

Find 115 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTCCATCAATCGTATTTA+TGG 0.118761 4_1:-74955018 Msa0572150:CDS
TCATTCTCCACATAGGTTAA+AGG 0.225911 4_1:-74952722 Msa0572150:three_prime_UTR
GAAGCAAATTACTTATTTCT+TGG 0.231778 4_1:-74955150 Msa0572150:CDS
TCAAACTCACCACAGTAATT+TGG 0.239332 4_1:+74953989 None:intergenic
ACCTTATGAGGTGGAGTTCC+AGG 0.245870 4_1:+74953857 None:intergenic
CGAGGTGTTTCATTTACATT+TGG 0.254753 4_1:-74954739 Msa0572150:CDS
TATCGGAAGACTTCAGTATC+TGG 0.265509 4_1:+74953918 None:intergenic
TCCAACTTTGCCCTTCTTAT+CGG 0.312310 4_1:+74953901 None:intergenic
CCATGATCTGGCACATCAAT+AGG 0.319380 4_1:+74954826 None:intergenic
AGAAATAAGTAATTTGCTTC+AGG 0.320791 4_1:+74955153 None:intergenic
CATAACAAGATTACCCCTTA+TGG 0.333035 4_1:+74952484 None:intergenic
GAGGTGTTTCATTTACATTT+GGG 0.340319 4_1:-74954738 Msa0572150:CDS
ATTGAAGATGTATCATCAAC+TGG 0.347192 4_1:-74956700 Msa0572150:five_prime_UTR
TGATTGCTTTAATTGTTTAC+CGG 0.357293 4_1:-74954941 Msa0572150:CDS
GCTTCAAGTTCAAGAAGATT+AGG 0.359782 4_1:+74956365 None:intergenic
AAGAAGGGCAAAGTTGGATT+TGG 0.364950 4_1:-74953896 Msa0572150:CDS
CGTATTCGAACAGCCTTAAA+AGG 0.372745 4_1:+74955187 None:intergenic
AGGAGAACTTCTTTCTTCTC+AGG 0.373373 4_1:-74955056 Msa0572150:CDS
TGGAAATTCAAACTCCATAA+GGG 0.384009 4_1:-74952498 Msa0572150:three_prime_UTR
GCCTTCTCTGCGACCTTCTG+TGG 0.394394 4_1:-74954804 Msa0572150:CDS
GCCTTAAAAGGTCTGAAAAC+TGG 0.396799 4_1:+74955199 None:intergenic
CATCCCTCAAGATCTTTATC+AGG 0.398758 4_1:+74954775 None:intergenic
ATGGAAATTCAAACTCCATA+AGG 0.400234 4_1:-74952499 Msa0572150:three_prime_UTR
GAAAGAAAGAAACAAGGATA+GGG 0.426060 4_1:+74952567 None:intergenic
CATAAGGGGTAATCTTGTTA+TGG 0.434936 4_1:-74952483 Msa0572150:three_prime_UTR
GATTGATGGAGGCGCATTCA+TGG 0.439246 4_1:+74955028 None:intergenic
GAAACCATAAATACGATTGA+TGG 0.442568 4_1:+74955014 None:intergenic
TACAGTCACCAGCTTACGTT+TGG 0.445882 4_1:+74954021 None:intergenic
GATGTATCATCAACTGGGCT+AGG 0.451995 4_1:-74956694 Msa0572150:five_prime_UTR
ACCTGGAACTCCACCTCATA+AGG 0.452558 4_1:-74953858 Msa0572150:intron
GAAGCTCCTATCAAAATTTG+TGG 0.455039 4_1:-74956347 Msa0572150:intron
TATATTTCTGCCACCTGGCA+TGG 0.458269 4_1:-74952697 Msa0572150:three_prime_UTR
CCTATTGATGTGCCAGATCA+TGG 0.458791 4_1:-74954826 Msa0572150:CDS
ACTCGAGCTATGTAACTATA+AGG 0.460438 4_1:-74952767 Msa0572150:three_prime_UTR
AAAAGGAATTAAATAAAGTA+AGG 0.468373 4_1:-74956992 None:intergenic
GGAGGTATAATGTTCGTCTC+TGG 0.469205 4_1:-74954975 Msa0572150:CDS
AGAAAGAAAGAAACAAGGAT+AGG 0.472918 4_1:+74952566 None:intergenic
CCCACAGAAGGTCGCAGAGA+AGG 0.474160 4_1:+74954803 None:intergenic
ACTGAAGTCTTCCGATAAGA+AGG 0.476810 4_1:-74953912 Msa0572150:CDS
AGAAGATCCTTTGCATGCAT+GGG 0.477596 4_1:-74954900 Msa0572150:CDS
TCGCAGAGAAGGCCATGATC+TGG 0.483085 4_1:+74954814 None:intergenic
CATGATCTGGCACATCAATA+GGG 0.484326 4_1:+74954827 None:intergenic
TCCGATAAGAAGGGCAAAGT+TGG 0.484368 4_1:-74953902 Msa0572150:CDS
ACACCGAGTGTGACAGCCTA+TGG 0.484463 4_1:-74952423 Msa0572150:three_prime_UTR
TTATCGTTGCAAAGGAAGGC+AGG 0.488159 4_1:+74952645 None:intergenic
GAGAGAAACGCGAAACGGAA+AGG 0.491445 4_1:+74956587 None:intergenic
AACGATAACTGAAGACAGTA+TGG 0.491721 4_1:-74952630 Msa0572150:three_prime_UTR
GGAGAACTTCTTTCTTCTCA+GGG 0.491751 4_1:-74955055 Msa0572150:CDS
AATAAGTAATTTGCTTCAGG+TGG 0.494184 4_1:+74955156 None:intergenic
TGATAAAGATCTTGAGGGAT+GGG 0.495424 4_1:-74954773 Msa0572150:CDS
GCGTCTCAGGTTGTAGAAGA+TGG 0.496210 4_1:-74954058 Msa0572150:intron
AAAGAGAGAGAAACGCGAAA+CGG 0.499054 4_1:+74956582 None:intergenic
GAGAAGATCCTTTGCATGCA+TGG 0.499556 4_1:-74954901 Msa0572150:CDS
TAACTATAAGGTCAGTGAGC+TGG 0.504000 4_1:-74952755 Msa0572150:three_prime_UTR
TCAGCTTTGTACTTCTGCTA+AGG 0.513143 4_1:-74956405 Msa0572150:CDS
TCTCTTGGAGATGGATGATA+CGG 0.513600 4_1:-74956513 Msa0572150:exon
TTCTTATTATTGATGTACAA+TGG 0.516811 4_1:-74952518 Msa0572150:three_prime_UTR
ATGGCTTTCATTCTCCACAT+AGG 0.527219 4_1:-74952729 Msa0572150:three_prime_UTR
CCTTCTCTGCGACCTTCTGT+GGG 0.527902 4_1:-74954803 Msa0572150:CDS
GTCTTCAGTTATCGTTGCAA+AGG 0.532817 4_1:+74952637 None:intergenic
AAGGTCAGTGAGCTGGATGA+TGG 0.534613 4_1:-74952748 Msa0572150:three_prime_UTR
TGTGAATCATCAACCATGCC+AGG 0.536811 4_1:+74952684 None:intergenic
TTTAAGGCTGTTCGAATACG+GGG 0.546220 4_1:-74955184 Msa0572150:CDS
TGATCCTGATAAAGATCTTG+AGG 0.546600 4_1:-74954779 Msa0572150:CDS
AGGTTTATATTTCTGCCACC+TGG 0.548073 4_1:-74952702 Msa0572150:three_prime_UTR
ATATAAACCTTTAACCTATG+TGG 0.548666 4_1:+74952715 None:intergenic
ATTTACATTTGGGGCTGACA+AGG 0.548915 4_1:-74954728 Msa0572150:CDS
AAAGGTCTGAAAACTGGCCA+TGG 0.549539 4_1:+74955205 None:intergenic
TCAGTTATCGTTGCAAAGGA+AGG 0.551286 4_1:+74952641 None:intergenic
TCTGATATGTAGAGCTCACC+AGG 0.551295 4_1:-74954674 Msa0572150:intron
CTGATAAAGATCTTGAGGGA+TGG 0.553149 4_1:-74954774 Msa0572150:CDS
ATAACTGAAGACAGTATGGC+AGG 0.556081 4_1:-74952626 Msa0572150:three_prime_UTR
CTCAGTCGTTTACAAGAAGG+AGG 0.558503 4_1:-74956660 Msa0572150:five_prime_UTR
AGGTGTTTCATTTACATTTG+GGG 0.560742 4_1:-74954737 Msa0572150:CDS
GTTTACAAGAAGGAGGGAAA+CGG 0.565321 4_1:-74956653 Msa0572150:five_prime_UTR
TTGTTTGCAGGAGATGTCCA+TGG 0.568088 4_1:-74955222 Msa0572150:intron
TCATCTACTAGAGCAGCAAC+CGG 0.568940 4_1:+74954922 None:intergenic
TCGCCATAGGCTGTCACACT+CGG 0.569823 4_1:+74952420 None:intergenic
TGCATATAAAATCAAATACA+AGG 0.570871 4_1:-74955076 Msa0572150:CDS
ATGTATCATCAACTGGGCTA+GGG 0.572489 4_1:-74956693 Msa0572150:five_prime_UTR
AAACTCAGTCGTTTACAAGA+AGG 0.574886 4_1:-74956663 Msa0572150:five_prime_UTR
TGTGGTGAGTTTGATAATGC+CGG 0.578788 4_1:-74953980 Msa0572150:CDS
GATCCTGATAAAGATCTTGA+GGG 0.581991 4_1:-74954778 Msa0572150:CDS
CTTGGAGATTATGTTGATCG+TGG 0.584311 4_1:-74955132 Msa0572150:CDS
AAAGAAAGAAACAAGGATAG+GGG 0.585866 4_1:+74952568 None:intergenic
ATCCACACTCATCATAGCAC+CGG 0.591401 4_1:+74953961 None:intergenic
GGCAATAACTCATCAAGACC+TGG 0.595098 4_1:-74953875 Msa0572150:CDS
TATCAGGATCAGCCCACAGA+AGG 0.599205 4_1:+74954791 None:intergenic
CTGAAGTCTTCCGATAAGAA+GGG 0.604771 4_1:-74953911 Msa0572150:CDS
GATAAAGATCTTGAGGGATG+GGG 0.613478 4_1:-74954772 Msa0572150:CDS
ATAAGTAATTTGCTTCAGGT+GGG 0.616465 4_1:+74955157 None:intergenic
AAGACAGTATGGCAGGGACA+TGG 0.622806 4_1:-74952619 Msa0572150:three_prime_UTR
GAAGATCCTTTGCATGCATG+GGG 0.624730 4_1:-74954899 Msa0572150:CDS
TGTGACAGCCTATGGCGAGT+AGG 0.625556 4_1:-74952415 Msa0572150:three_prime_UTR
TACAAGAAGGAGGGAAACGG+CGG 0.626522 4_1:-74956650 Msa0572150:five_prime_UTR
TATCGTTGCAAAGGAAGGCA+GGG 0.629111 4_1:+74952646 None:intergenic
GGAAATTCAAACTCCATAAG+GGG 0.629390 4_1:-74952497 Msa0572150:three_prime_UTR
GGATGGGGAGAAAATGATCG+AGG 0.631648 4_1:-74954757 Msa0572150:CDS
TTGAAGATGTATCATCAACT+GGG 0.634964 4_1:-74956699 Msa0572150:five_prime_UTR
AAGAAAGAAACAAGGATAGG+GGG 0.636253 4_1:+74952569 None:intergenic
GTTTCTACGATGAGTGCAAG+AGG 0.643121 4_1:-74954996 Msa0572150:CDS
TAACTGAAGACAGTATGGCA+GGG 0.644062 4_1:-74952625 Msa0572150:three_prime_UTR
AAGCTTGTATCAGCGAAGAA+CGG 0.644702 4_1:-74956470 Msa0572150:CDS
AAGCTGACGAATATCAGCCT+CGG 0.647938 4_1:+74956421 None:intergenic
ACCATAAATACGATTGATGG+AGG 0.650130 4_1:+74955017 None:intergenic
AAATAAGAAAGAAAGAAACA+AGG 0.650216 4_1:+74952561 None:intergenic
TCAGTCGTTTACAAGAAGGA+GGG 0.661164 4_1:-74956659 Msa0572150:five_prime_UTR
GAGAACTTCTTTCTTCTCAG+GGG 0.674269 4_1:-74955054 Msa0572150:CDS
TGCCGGTGCTATGATGAGTG+TGG 0.686901 4_1:-74953963 Msa0572150:CDS
TTAAGGCTGTTCGAATACGG+GGG 0.692495 4_1:-74955183 Msa0572150:CDS
TCTACGATGAGTGCAAGAGG+AGG 0.698302 4_1:-74954993 Msa0572150:CDS
TTCTCTGCACCAAATTACTG+TGG 0.705308 4_1:-74953998 Msa0572150:CDS
GAATCATCAACCATGCCAGG+TGG 0.723519 4_1:+74952687 None:intergenic
AAGATCCTTTGCATGCATGG+GGG 0.732102 4_1:-74954898 Msa0572150:CDS
GAAGCAAGTTCATCTTACCG+AGG 0.743441 4_1:-74956438 Msa0572150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATTTTAATTTTTAAT+TGG - chr4_1:74953199-74953218 Msa0572150:intron 0.0%
!!! TTTAATTTTAATTTTTAATT+GGG - chr4_1:74953200-74953219 Msa0572150:intron 0.0%
!!! AGATTTTTATGATTATTAAA+TGG - chr4_1:74952432-74952451 Msa0572150:three_prime_UTR 10.0%
!!! GATTTTTATGATTATTAAAT+GGG - chr4_1:74952433-74952452 Msa0572150:three_prime_UTR 10.0%
!! CAAATATATAAATAATGTAT+TGG - chr4_1:74952495-74952514 Msa0572150:three_prime_UTR 10.0%
!!! AACTCATAAATTTTAATTTT+AGG - chr4_1:74953766-74953785 Msa0572150:intron 10.0%
!!! ACTCATAAATTTTAATTTTA+GGG - chr4_1:74953767-74953786 Msa0572150:intron 10.0%
!!! TTATAGAATATTTCTTCTTT+TGG - chr4_1:74952573-74952592 Msa0572150:three_prime_UTR 15.0%
!! TTGGATATAGAATTTAATAA+GGG + chr4_1:74952638-74952657 None:intergenic 15.0%
!! TAGAATTTATGTAATTGAAT+TGG - chr4_1:74953154-74953173 Msa0572150:intron 15.0%
!!! CATTCATATTTTTAACAAAA+TGG + chr4_1:74953982-74954001 None:intergenic 15.0%
!! TATTTATAATGATAATTGAG+CGG - chr4_1:74954900-74954919 Msa0572150:CDS 15.0%
!! TATATAAATCTACACAAAAT+CGG + chr4_1:74955974-74955993 None:intergenic 15.0%
!! ACAAGTTTAAAAACTATTAA+TGG - chr4_1:74956199-74956218 Msa0572150:intron 15.0%
!! GTTGGATATAGAATTTAATA+AGG + chr4_1:74952639-74952658 None:intergenic 20.0%
!!! TTTTAATTTTTAATTGGGGT+CGG - chr4_1:74953205-74953224 Msa0572150:intron 20.0%
!!! TCATACACTTTTTTAATGAA+TGG - chr4_1:74953319-74953338 Msa0572150:intron 20.0%
!! TAACAAAATGGAAAAACTTT+AGG + chr4_1:74953970-74953989 None:intergenic 20.0%
!! TGCATATAAAATCAAATACA+AGG - chr4_1:74954307-74954326 Msa0572150:intron 20.0%
!! CTATTTATAAATTATAGCCA+AGG + chr4_1:74954794-74954813 None:intergenic 20.0%
!! AAACTTATTGTATATACAGA+CGG + chr4_1:74954819-74954838 None:intergenic 20.0%
!!! TCTGATTCCTTTTAATATTT+TGG - chr4_1:74955297-74955316 Msa0572150:intron 20.0%
!!! CTGATTCCTTTTAATATTTT+GGG - chr4_1:74955298-74955317 Msa0572150:intron 20.0%
!!! TGATTCCTTTTAATATTTTG+GGG - chr4_1:74955299-74955318 Msa0572150:intron 20.0%
!!! CATTATATTTTTACCTTATG+AGG + chr4_1:74955541-74955560 None:intergenic 20.0%
!! ATAAATCTATACACAAAATC+AGG + chr4_1:74955758-74955777 None:intergenic 20.0%
!!! TTTTTAAACTTGTCTTAACT+TGG + chr4_1:74956192-74956211 None:intergenic 20.0%
!! AAATAAGAAAGAAAGAAACA+AGG + chr4_1:74956825-74956844 None:intergenic 20.0%
!! TTCTTATTATTGATGTACAA+TGG - chr4_1:74956865-74956884 Msa0572150:intron 20.0%
! GATATAGAATTTAATAAGGG+TGG + chr4_1:74952635-74952654 None:intergenic 25.0%
!!! AAGATACCACAAATTTTGAT+AGG + chr4_1:74953045-74953064 None:intergenic 25.0%
! TTATGTAATTGAATTGGTAG+TGG - chr4_1:74953160-74953179 Msa0572150:intron 25.0%
!!! TTTAATTTTTAATTGGGGTC+GGG - chr4_1:74953206-74953225 Msa0572150:intron 25.0%
!!! TTGAGTTGAATTTGTTTTTG+TGG - chr4_1:74953383-74953402 Msa0572150:intron 25.0%
!!! TTGTTTTTGTGGTTTTTGAT+AGG - chr4_1:74953394-74953413 Msa0572150:intron 25.0%
!! TTGGGTTTATCTCAAATTTT+TGG - chr4_1:74953705-74953724 Msa0572150:intron 25.0%
!!! AGAAATAAGTAATTTGCTTC+AGG + chr4_1:74954233-74954252 None:intergenic 25.0%
!! GAAGCAAATTACTTATTTCT+TGG - chr4_1:74954233-74954252 Msa0572150:intron 25.0%
! TGATTGCTTTAATTGTTTAC+CGG - chr4_1:74954442-74954461 Msa0572150:intron 25.0%
! TTAAAAACTTGGATCAGATA+CGG - chr4_1:74954522-74954541 Msa0572150:intron 25.0%
! TTATAAATTATAGCCAAGGA+TGG + chr4_1:74954790-74954809 None:intergenic 25.0%
! AAAAAGAGGTAGTTAAACAA+AGG + chr4_1:74955154-74955173 None:intergenic 25.0%
!!! GATTCCTTTTAATATTTTGG+GGG - chr4_1:74955300-74955319 Msa0572150:intron 25.0%
!!! TATATTTTTACCTTATGAGG+TGG + chr4_1:74955538-74955557 None:intergenic 25.0%
! TGATTCTATGTATATGTGTA+TGG - chr4_1:74955596-74955615 Msa0572150:intron 25.0%
! GATTCTATGTATATGTGTAT+GGG - chr4_1:74955597-74955616 Msa0572150:intron 25.0%
! TATGAAACTTCTGAATTCTT+TGG + chr4_1:74955881-74955900 None:intergenic 25.0%
! ACATAAATCTACACAAAATC+AGG + chr4_1:74956080-74956099 None:intergenic 25.0%
!!! TTGGACACTTTAATTTTGAT+GGG + chr4_1:74956229-74956248 None:intergenic 25.0%
!!! TTTGGACACTTTAATTTTGA+TGG + chr4_1:74956230-74956249 None:intergenic 25.0%
!!! ACAGGAAGCTTTTTTTTTTT+GGG + chr4_1:74956375-74956394 None:intergenic 25.0%
! AAAAAAAAAAAGCTTCCTGT+GGG - chr4_1:74956375-74956394 Msa0572150:CDS 25.0%
! TTGTGATATTTAATGAGTTC+TGG - chr4_1:74956551-74956570 Msa0572150:five_prime_UTR 25.0%
! ATATAAACCTTTAACCTATG+TGG + chr4_1:74956671-74956690 None:intergenic 25.0%
TAGTGTGTCACAAAAAATGT+TGG + chr4_1:74952657-74952676 None:intergenic 30.0%
ATTGAAGATGTATCATCAAC+TGG - chr4_1:74952683-74952702 Msa0572150:three_prime_UTR 30.0%
TTGAAGATGTATCATCAACT+GGG - chr4_1:74952684-74952703 Msa0572150:three_prime_UTR 30.0%
!!! CACTTTTTTAATGAATGGCT+AGG - chr4_1:74953324-74953343 Msa0572150:intron 30.0%
! TGGTTTTTGATAGGATTGTT+TGG - chr4_1:74953403-74953422 Msa0572150:intron 30.0%
! GTTTTCTTCAGACAATTAAG+TGG - chr4_1:74953425-74953444 Msa0572150:intron 30.0%
TTATTTGTGTTTCCACATTG+CGG - chr4_1:74953488-74953507 Msa0572150:intron 30.0%
!!! TGGGCTTTTAAAATGTTAAC+AGG + chr4_1:74953731-74953750 None:intergenic 30.0%
!!! TTTTAATTTTAGGGATGCAG+TGG - chr4_1:74953776-74953795 Msa0572150:intron 30.0%
CATGTTATCAACTTATCATC+AGG - chr4_1:74953936-74953955 Msa0572150:CDS 30.0%
! GGTTTAAACAATTTGTTTGC+AGG - chr4_1:74954149-74954168 Msa0572150:intron 30.0%
!! ATAAGTAATTTGCTTCAGGT+GGG + chr4_1:74954229-74954248 None:intergenic 30.0%
!! AATAAGTAATTTGCTTCAGG+TGG + chr4_1:74954230-74954249 None:intergenic 30.0%
GAAACCATAAATACGATTGA+TGG + chr4_1:74954372-74954391 None:intergenic 30.0%
TTCTCCTGAACTTAAAAACT+TGG - chr4_1:74954511-74954530 Msa0572150:intron 30.0%
!!! TGATCCAAGTTTTTAAGTTC+AGG + chr4_1:74954518-74954537 None:intergenic 30.0%
! GAGGTGTTTCATTTACATTT+GGG - chr4_1:74954645-74954664 Msa0572150:intron 30.0%
AGGTGTTTCATTTACATTTG+GGG - chr4_1:74954646-74954665 Msa0572150:intron 30.0%
AGTAAAGGATATGACAAAGT+TGG - chr4_1:74954956-74954975 Msa0572150:CDS 30.0%
GTAAAGGATATGACAAAGTT+GGG - chr4_1:74954957-74954976 Msa0572150:CDS 30.0%
ACTTCAACACCTCATAAATA+TGG - chr4_1:74955098-74955117 Msa0572150:CDS 30.0%
CTTCAACACCTCATAAATAT+GGG - chr4_1:74955099-74955118 Msa0572150:CDS 30.0%
AGAATGATCCCATATTTATG+AGG + chr4_1:74955110-74955129 None:intergenic 30.0%
TTATATATTTGTCTGTGTGC+TGG - chr4_1:74955213-74955232 Msa0572150:CDS 30.0%
! AAGTTTCATGTCACTTAAGT+TGG - chr4_1:74955710-74955729 Msa0572150:intron 30.0%
TGATTCTATGTATATGTGCA+TGG - chr4_1:74955806-74955825 Msa0572150:intron 30.0%
GATTCTATGTATATGTGCAT+GGG - chr4_1:74955807-74955826 Msa0572150:intron 30.0%
ATTCTATGTATATGTGCATG+GGG - chr4_1:74955808-74955827 Msa0572150:intron 30.0%
! AAGTTTCATGTCACTTAAGT+TGG - chr4_1:74955710-74955729 Msa0572150:intron 30.0%
AGAAGTTTCATAACTTCTAC+TGG - chr4_1:74956025-74956044 Msa0572150:intron 30.0%
!! ATTGCTTTAGAGAAACATCT+TGG - chr4_1:74956147-74956166 Msa0572150:intron 30.0%
!! TTGCTTTAGAGAAACATCTT+GGG - chr4_1:74956148-74956167 Msa0572150:intron 30.0%
AAAATGGTGAATTGTGTCTA+TGG + chr4_1:74956280-74956299 None:intergenic 30.0%
!!! AAGCTTTTTTTTTTTGGGTG+GGG + chr4_1:74956370-74956389 None:intergenic 30.0%
!!! GAAGCTTTTTTTTTTTGGGT+GGG + chr4_1:74956371-74956390 None:intergenic 30.0%
!!! CACAGGAAGCTTTTTTTTTT+TGG + chr4_1:74956376-74956395 None:intergenic 30.0%
CAAAAAAAAAAAGCTTCCTG+TGG - chr4_1:74956374-74956393 Msa0572150:CDS 30.0%
AAAGAAAGAAACAAGGATAG+GGG + chr4_1:74956818-74956837 None:intergenic 30.0%
GAAAGAAAGAAACAAGGATA+GGG + chr4_1:74956819-74956838 None:intergenic 30.0%
AGAAAGAAAGAAACAAGGAT+AGG + chr4_1:74956820-74956839 None:intergenic 30.0%
ATGGAAATTCAAACTCCATA+AGG - chr4_1:74956884-74956903 Msa0572150:intron 30.0%
TGGAAATTCAAACTCCATAA+GGG - chr4_1:74956885-74956904 Msa0572150:intron 30.0%
AATGTTATCTTGTGCCCTTA+AGG - chr4_1:74952457-74952476 Msa0572150:three_prime_UTR 35.0%
!! TTCCTTAACTTGTGCCTTAA+GGG + chr4_1:74952474-74952493 None:intergenic 35.0%
!! ATTCCTTAACTTGTGCCTTA+AGG + chr4_1:74952475-74952494 None:intergenic 35.0%
AAACTCAGTCGTTTACAAGA+AGG - chr4_1:74952720-74952739 Msa0572150:three_prime_UTR 35.0%
AGAGAGAGAGAGAAAGAAAA+CGG + chr4_1:74952839-74952858 None:intergenic 35.0%
! GCTTCAAGTTCAAGAAGATT+AGG + chr4_1:74953021-74953040 None:intergenic 35.0%
GAAGCTCCTATCAAAATTTG+TGG - chr4_1:74953036-74953055 Msa0572150:intron 35.0%
!! TTTTAATTAAAGCGGCACTG+AGG - chr4_1:74953244-74953263 Msa0572150:intron 35.0%
! TTTAATTAAAGCGGCACTGA+GGG - chr4_1:74953245-74953264 Msa0572150:intron 35.0%
TAAACTGATTGACAACCAAG+GGG + chr4_1:74953586-74953605 None:intergenic 35.0%
CTAAACTGATTGACAACCAA+GGG + chr4_1:74953587-74953606 None:intergenic 35.0%
ACTAAACTGATTGACAACCA+AGG + chr4_1:74953588-74953607 None:intergenic 35.0%
TTCTTTCTTCTGTGAATTCC+CGG - chr4_1:74953627-74953646 Msa0572150:intron 35.0%
!! TGCATGTTTGATTTGACGTT+TGG - chr4_1:74953806-74953825 Msa0572150:intron 35.0%
!!! TTTAGCTTTTGCACATACTG+TGG - chr4_1:74953867-74953886 Msa0572150:CDS 35.0%
! TTTTGCACATACTGTGGTTT+TGG - chr4_1:74953873-74953892 Msa0572150:CDS 35.0%
!! AGTAAGAGTGTGTTTGGTTT+TGG + chr4_1:74953910-74953929 None:intergenic 35.0%
!! CTCTAAAGTAAGAGTGTGTT+TGG + chr4_1:74953916-74953935 None:intergenic 35.0%
ACACACAACATAATGAGACA+AGG + chr4_1:74954071-74954090 None:intergenic 35.0%
AAAAGCAAAATAGGACCTGA+AGG + chr4_1:74954101-74954120 None:intergenic 35.0%
ACAGTGGTCAAAAGCAAAAT+AGG + chr4_1:74954110-74954129 None:intergenic 35.0%
TTAACACTTACAGATGACAG+TGG + chr4_1:74954126-74954145 None:intergenic 35.0%
GTCATCTGTAAGTGTTAAAC+TGG - chr4_1:74954128-74954147 Msa0572150:intron 35.0%
!!! CTTTTAAGGCTGTTCGAATA+CGG - chr4_1:74954197-74954216 Msa0572150:intron 35.0%
!!! TTTTAAGGCTGTTCGAATAC+GGG - chr4_1:74954198-74954217 Msa0572150:intron 35.0%
ACCATAAATACGATTGATGG+AGG + chr4_1:74954369-74954388 None:intergenic 35.0%
TGATCCTGATAAAGATCTTG+AGG - chr4_1:74954604-74954623 Msa0572150:intron 35.0%
GATCCTGATAAAGATCTTGA+GGG - chr4_1:74954605-74954624 Msa0572150:intron 35.0%
TGATAAAGATCTTGAGGGAT+GGG - chr4_1:74954610-74954629 Msa0572150:intron 35.0%
! CGAGGTGTTTCATTTACATT+TGG - chr4_1:74954644-74954663 Msa0572150:intron 35.0%
TTGAAATCAACCAAGCTACA+GGG + chr4_1:74954742-74954761 None:intergenic 35.0%
ATTGAAATCAACCAAGCTAC+AGG + chr4_1:74954743-74954762 None:intergenic 35.0%
GAGAAAGACTACATGAGTAA+AGG - chr4_1:74954941-74954960 Msa0572150:CDS 35.0%
AGTGTTAAGCACAAAGGAAA+GGG + chr4_1:74955077-74955096 None:intergenic 35.0%
TAGTGTTAAGCACAAAGGAA+AGG + chr4_1:74955078-74955097 None:intergenic 35.0%
GAAGTTAGTGTTAAGCACAA+AGG + chr4_1:74955083-74955102 None:intergenic 35.0%
AGGAATCAGATCAGATTTAC+TGG + chr4_1:74955287-74955306 None:intergenic 35.0%
TCAAACTCACCACAGTAATT+TGG + chr4_1:74955397-74955416 None:intergenic 35.0%
TTCTATGTATATGTGCATGG+GGG - chr4_1:74955809-74955828 Msa0572150:intron 35.0%
! TCTTAACTTGGTAACAGCAT+AGG + chr4_1:74956180-74956199 None:intergenic 35.0%
AAAAAGAGATTCAACGTTCG+CGG - chr4_1:74956247-74956266 Msa0572150:intron 35.0%
! CACAATTCACCATTTTCTTG+TGG - chr4_1:74956284-74956303 Msa0572150:intron 35.0%
! ACCATTTTCTTGTGGTTTCT+AGG - chr4_1:74956292-74956311 Msa0572150:intron 35.0%
! CCATTTTCTTGTGGTTTCTA+GGG - chr4_1:74956293-74956312 Msa0572150:intron 35.0%
!! CATTTTCTTGTGGTTTCTAG+GGG - chr4_1:74956294-74956313 Msa0572150:intron 35.0%
! AGGGGTATATAAGTGAGAAA+TGG - chr4_1:74956312-74956331 Msa0572150:intron 35.0%
!!! TTTTTTTTTTTGGGTGGGGA+GGG + chr4_1:74956366-74956385 None:intergenic 35.0%
!!! GGAAGCTTTTTTTTTTTGGG+TGG + chr4_1:74956372-74956391 None:intergenic 35.0%
! ACGGGTCGACTAAAATTTTT+AGG - chr4_1:74956423-74956442 Msa0572150:CDS 35.0%
TTAATTAATTCTTCCCACCC+TGG + chr4_1:74956593-74956612 None:intergenic 35.0%
ACTCGAGCTATGTAACTATA+AGG - chr4_1:74956616-74956635 Msa0572150:five_prime_UTR 35.0%
TCATTCTCCACATAGGTTAA+AGG - chr4_1:74956661-74956680 Msa0572150:five_prime_UTR 35.0%
AACGATAACTGAAGACAGTA+TGG - chr4_1:74956753-74956772 Msa0572150:intron 35.0%
AAGAAAGAAACAAGGATAGG+GGG + chr4_1:74956817-74956836 None:intergenic 35.0%
GGAAATTCAAACTCCATAAG+GGG - chr4_1:74956886-74956905 Msa0572150:intron 35.0%
CATAACAAGATTACCCCTTA+TGG + chr4_1:74956902-74956921 None:intergenic 35.0%
CATAAGGGGTAATCTTGTTA+TGG - chr4_1:74956900-74956919 Msa0572150:intron 35.0%
! ATATTTTTCCTACTCGCCAT+AGG + chr4_1:74956979-74956998 None:intergenic 35.0%
AGTTCTTAACATGTGCCCTA+AGG - chr4_1:74952596-74952615 Msa0572150:three_prime_UTR 40.0%
GTTCTTAACATGTGCCCTAA+GGG - chr4_1:74952597-74952616 Msa0572150:three_prime_UTR 40.0%
ATGTATCATCAACTGGGCTA+GGG - chr4_1:74952690-74952709 Msa0572150:three_prime_UTR 40.0%
TCAGTCGTTTACAAGAAGGA+GGG - chr4_1:74952724-74952743 Msa0572150:three_prime_UTR 40.0%
GTTTACAAGAAGGAGGGAAA+CGG - chr4_1:74952730-74952749 Msa0572150:three_prime_UTR 40.0%
AAAGAGAGAGAAACGCGAAA+CGG + chr4_1:74952804-74952823 None:intergenic 40.0%
! CTCTCTCTCTCTTTTTCTCT+TGG - chr4_1:74952855-74952874 Msa0572150:intron 40.0%
! CTCTCTTTTTCTCTTGGAGA+TGG - chr4_1:74952861-74952880 Msa0572150:intron 40.0%
TCTCTTGGAGATGGATGATA+CGG - chr4_1:74952870-74952889 Msa0572150:intron 40.0%
AAGCTTGTATCAGCGAAGAA+CGG - chr4_1:74952913-74952932 Msa0572150:intron 40.0%
! TCAGCTTTGTACTTCTGCTA+AGG - chr4_1:74952978-74952997 Msa0572150:intron 40.0%
TGCTTCTTTCGACACTTCTT+TGG - chr4_1:74953356-74953375 Msa0572150:intron 40.0%
ATCTCAACAGGAAGAGATAC+TGG + chr4_1:74953557-74953576 None:intergenic 40.0%
AGTATCTCTTCCTGTTGAGA+TGG - chr4_1:74953556-74953575 Msa0572150:intron 40.0%
GTATCTCTTCCTGTTGAGAT+GGG - chr4_1:74953557-74953576 Msa0572150:intron 40.0%
!! TCAGTTTAGTTTGAAACCCC+TGG - chr4_1:74953598-74953617 Msa0572150:intron 40.0%
CAGTATGTTCCTGACATAAG+GGG + chr4_1:74953670-74953689 None:intergenic 40.0%
GCAGTATGTTCCTGACATAA+GGG + chr4_1:74953671-74953690 None:intergenic 40.0%
AAACCCAAAAACACACCACA+AGG + chr4_1:74953693-74953712 None:intergenic 40.0%
AAAAGCCCACTTATCTAACG+TGG - chr4_1:74953742-74953761 Msa0572150:intron 40.0%
AGTTGCCACGTTAGATAAGT+GGG + chr4_1:74953750-74953769 None:intergenic 40.0%
AAAGTCCCAGATCATGGTTT+GGG - chr4_1:74953829-74953848 Msa0572150:intron 40.0%
! TTTTGCCCAAACCATGATCT+GGG + chr4_1:74953837-74953856 None:intergenic 40.0%
!!! GTGTGTTTGGTTTTGGCATT+CGG + chr4_1:74953903-74953922 None:intergenic 40.0%
! CACCTTGAGTATCTGGTTTA+CGG - chr4_1:74954012-74954031 Msa0572150:CDS 40.0%
TTCCGTAAACCAGATACTCA+AGG + chr4_1:74954017-74954036 None:intergenic 40.0%
AGACAAGGCAATCAAACTAG+GGG + chr4_1:74954056-74954075 None:intergenic 40.0%
GAGACAAGGCAATCAAACTA+GGG + chr4_1:74954057-74954076 None:intergenic 40.0%
TGAGACAAGGCAATCAAACT+AGG + chr4_1:74954058-74954077 None:intergenic 40.0%
TTGTGTGTGTATCTTCCTTC+AGG - chr4_1:74954083-74954102 Msa0572150:intron 40.0%
! GCCAGTTTTCAGACCTTTTA+AGG - chr4_1:74954183-74954202 Msa0572150:intron 40.0%
GCCTTAAAAGGTCTGAAAAC+TGG + chr4_1:74954187-74954206 None:intergenic 40.0%
CGTATTCGAACAGCCTTAAA+AGG + chr4_1:74954199-74954218 None:intergenic 40.0%
! TTTAAGGCTGTTCGAATACG+GGG - chr4_1:74954199-74954218 Msa0572150:intron 40.0%
CTTGGAGATTATGTTGATCG+TGG - chr4_1:74954251-74954270 Msa0572150:intron 40.0%
AGGAGAACTTCTTTCTTCTC+AGG - chr4_1:74954327-74954346 Msa0572150:intron 40.0%
GGAGAACTTCTTTCTTCTCA+GGG - chr4_1:74954328-74954347 Msa0572150:intron 40.0%
GAGAACTTCTTTCTTCTCAG+GGG - chr4_1:74954329-74954348 Msa0572150:intron 40.0%
GCCTCCATCAATCGTATTTA+TGG - chr4_1:74954365-74954384 Msa0572150:intron 40.0%
AGAAGATCCTTTGCATGCAT+GGG - chr4_1:74954483-74954502 Msa0572150:intron 40.0%
CATGATCTGGCACATCAATA+GGG + chr4_1:74954559-74954578 None:intergenic 40.0%
CATCCCTCAAGATCTTTATC+AGG + chr4_1:74954611-74954630 None:intergenic 40.0%
CTGATAAAGATCTTGAGGGA+TGG - chr4_1:74954609-74954628 Msa0572150:intron 40.0%
GATAAAGATCTTGAGGGATG+GGG - chr4_1:74954611-74954630 Msa0572150:intron 40.0%
! ATTTACATTTGGGGCTGACA+AGG - chr4_1:74954655-74954674 Msa0572150:intron 40.0%
ATTATAGCCAAGGATGGCAT+TGG + chr4_1:74954784-74954803 None:intergenic 40.0%
ATGCACAACACGACTGAATA+TGG - chr4_1:74955036-74955055 Msa0572150:CDS 40.0%
! CACGACTGAATATGGTTTTC+TGG - chr4_1:74955044-74955063 Msa0572150:CDS 40.0%
! GACTGAATATGGTTTTCTGG+CGG - chr4_1:74955047-74955066 Msa0572150:CDS 40.0%
GTGTTAAGCACAAAGGAAAG+GGG + chr4_1:74955076-74955095 None:intergenic 40.0%
! ATTGGGATTTTGCTTCGCTT+AGG - chr4_1:74955239-74955258 Msa0572150:intron 40.0%
! TTGGGATTTTGCTTCGCTTA+GGG - chr4_1:74955240-74955259 Msa0572150:intron 40.0%
GCAGCCCCCAAAATATTAAA+AGG + chr4_1:74955307-74955326 None:intergenic 40.0%
!!! GTTTTTTGCCAAACGTAAGC+TGG - chr4_1:74955354-74955373 Msa0572150:intron 40.0%
TTCTCTGCACCAAATTACTG+TGG - chr4_1:74955385-74955404 Msa0572150:intron 40.0%
!! TGTGGTGAGTTTGATAATGC+CGG - chr4_1:74955403-74955422 Msa0572150:intron 40.0%
TATCGGAAGACTTCAGTATC+TGG + chr4_1:74955468-74955487 None:intergenic 40.0%
ACTGAAGTCTTCCGATAAGA+AGG - chr4_1:74955471-74955490 Msa0572150:intron 40.0%
CTGAAGTCTTCCGATAAGAA+GGG - chr4_1:74955472-74955491 Msa0572150:intron 40.0%
TCCAACTTTGCCCTTCTTAT+CGG + chr4_1:74955485-74955504 None:intergenic 40.0%
AAGAAGGGCAAAGTTGGATT+TGG - chr4_1:74955487-74955506 Msa0572150:intron 40.0%
! GCGAACGTTGAATCTCTTTT+TGG + chr4_1:74956248-74956267 None:intergenic 40.0%
AAAAGAGATTCAACGTTCGC+GGG - chr4_1:74956248-74956267 Msa0572150:intron 40.0%
CCCTAGAAACCACAAGAAAA+TGG + chr4_1:74956296-74956315 None:intergenic 40.0%
TGAGAAATGGCTATGCTCTT+TGG - chr4_1:74956325-74956344 Msa0572150:intron 40.0%
GAGAAATGGCTATGCTCTTT+GGG - chr4_1:74956326-74956345 Msa0572150:intron 40.0%
AGAAATGGCTATGCTCTTTG+GGG - chr4_1:74956327-74956346 Msa0572150:intron 40.0%
!!! TTTTTTTTTTGGGTGGGGAG+GGG + chr4_1:74956365-74956384 None:intergenic 40.0%
!!! CTTTTTTTTTTTGGGTGGGG+AGG + chr4_1:74956367-74956386 None:intergenic 40.0%
TAGTCGACCCGTATACATAA+GGG + chr4_1:74956415-74956434 None:intergenic 40.0%
TTAGTCGACCCGTATACATA+AGG + chr4_1:74956416-74956435 None:intergenic 40.0%
GCCATATACCTGTTATTCCA+GGG - chr4_1:74956573-74956592 Msa0572150:five_prime_UTR 40.0%
ACCCTGGAATAACAGGTATA+TGG + chr4_1:74956577-74956596 None:intergenic 40.0%
ATATACCTGTTATTCCAGGG+TGG - chr4_1:74956576-74956595 Msa0572150:five_prime_UTR 40.0%
TATACCTGTTATTCCAGGGT+GGG - chr4_1:74956577-74956596 Msa0572150:five_prime_UTR 40.0%
TAACTATAAGGTCAGTGAGC+TGG - chr4_1:74956628-74956647 Msa0572150:five_prime_UTR 40.0%
ATGGCTTTCATTCTCCACAT+AGG - chr4_1:74956654-74956673 Msa0572150:five_prime_UTR 40.0%
! AGGTTTATATTTCTGCCACC+TGG - chr4_1:74956681-74956700 Msa0572150:five_prime_UTR 40.0%
TCAGTTATCGTTGCAAAGGA+AGG + chr4_1:74956745-74956764 None:intergenic 40.0%
GTCTTCAGTTATCGTTGCAA+AGG + chr4_1:74956749-74956768 None:intergenic 40.0%
ATAACTGAAGACAGTATGGC+AGG - chr4_1:74956757-74956776 Msa0572150:intron 40.0%
TAACTGAAGACAGTATGGCA+GGG - chr4_1:74956758-74956777 Msa0572150:intron 40.0%
TGCCCTTAAGGCACAAGTTA+AGG - chr4_1:74952469-74952488 Msa0572150:three_prime_UTR 45.0%
!! GGTGTTAACTTGTGCCCTTA+GGG + chr4_1:74952614-74952633 None:intergenic 45.0%
!! TGGTGTTAACTTGTGCCCTT+AGG + chr4_1:74952615-74952634 None:intergenic 45.0%
GATGTATCATCAACTGGGCT+AGG - chr4_1:74952689-74952708 Msa0572150:three_prime_UTR 45.0%
CTCAGTCGTTTACAAGAAGG+AGG - chr4_1:74952723-74952742 Msa0572150:three_prime_UTR 45.0%
GAAGCAAGTTCATCTTACCG+AGG - chr4_1:74952945-74952964 Msa0572150:intron 45.0%
AAGCTGACGAATATCAGCCT+CGG + chr4_1:74952965-74952984 None:intergenic 45.0%
TTGTGTTTCCACATTGCGGA+TGG - chr4_1:74953492-74953511 Msa0572150:intron 45.0%
TGTGTTTCCACATTGCGGAT+GGG - chr4_1:74953493-74953512 Msa0572150:intron 45.0%
CTGAGGCTGTATGAGATAGA+AGG - chr4_1:74953529-74953548 Msa0572150:intron 45.0%
AGAAGAAAGAAGCTCGACCA+GGG + chr4_1:74953618-74953637 None:intergenic 45.0%
CTTCTGTGAATTCCCGGTTT+AGG - chr4_1:74953633-74953652 Msa0572150:intron 45.0%
GGCAGTATGTTCCTGACATA+AGG + chr4_1:74953672-74953691 None:intergenic 45.0%
! ACTGCCTTGTGGTGTGTTTT+TGG - chr4_1:74953686-74953705 Msa0572150:intron 45.0%
! CTGCCTTGTGGTGTGTTTTT+GGG - chr4_1:74953687-74953706 Msa0572150:intron 45.0%
GAGTTGCCACGTTAGATAAG+TGG + chr4_1:74953751-74953770 None:intergenic 45.0%
GTTTGGAAAGTCCCAGATCA+TGG - chr4_1:74953823-74953842 Msa0572150:intron 45.0%
GAAAGTCCCAGATCATGGTT+TGG - chr4_1:74953828-74953847 Msa0572150:intron 45.0%
! CTTTTGCCCAAACCATGATC+TGG + chr4_1:74953838-74953857 None:intergenic 45.0%
! CCAGATACTCAAGGTGTCAA+GGG + chr4_1:74954008-74954027 None:intergenic 45.0%
! ACCAGATACTCAAGGTGTCA+AGG + chr4_1:74954009-74954028 None:intergenic 45.0%
ACAAGGCAATCAAACTAGGG+GGG + chr4_1:74954054-74954073 None:intergenic 45.0%
GACAAGGCAATCAAACTAGG+GGG + chr4_1:74954055-74954074 None:intergenic 45.0%
TTGTTTGCAGGAGATGTCCA+TGG - chr4_1:74954161-74954180 Msa0572150:intron 45.0%
AAAGGTCTGAAAACTGGCCA+TGG + chr4_1:74954181-74954200 None:intergenic 45.0%
TTAAGGCTGTTCGAATACGG+GGG - chr4_1:74954200-74954219 Msa0572150:intron 45.0%
GTTTCTACGATGAGTGCAAG+AGG - chr4_1:74954387-74954406 Msa0572150:intron 45.0%
! GGAGGTATAATGTTCGTCTC+TGG - chr4_1:74954408-74954427 Msa0572150:intron 45.0%
TCATCTACTAGAGCAGCAAC+CGG + chr4_1:74954464-74954483 None:intergenic 45.0%
GAGAAGATCCTTTGCATGCA+TGG - chr4_1:74954482-74954501 Msa0572150:intron 45.0%
GAAGATCCTTTGCATGCATG+GGG - chr4_1:74954484-74954503 Msa0572150:intron 45.0%
AAGATCCTTTGCATGCATGG+GGG - chr4_1:74954485-74954504 Msa0572150:intron 45.0%
CCATGATCTGGCACATCAAT+AGG + chr4_1:74954560-74954579 None:intergenic 45.0%
CCTATTGATGTGCCAGATCA+TGG - chr4_1:74954557-74954576 Msa0572150:intron 45.0%
TCTGATATGTAGAGCTCACC+AGG - chr4_1:74954709-74954728 Msa0572150:CDS 45.0%
AAGCTACAGGGTTCATTACC+TGG + chr4_1:74954730-74954749 None:intergenic 45.0%
AGGTAATGAACCCTGTAGCT+TGG - chr4_1:74954729-74954748 Msa0572150:CDS 45.0%
TGATTGACCAATGCCATCCT+TGG - chr4_1:74954774-74954793 Msa0572150:CDS 45.0%
! TAAGCACATGCTTTGAGCAG+AGG - chr4_1:74954877-74954896 Msa0572150:CDS 45.0%
AATTGAGCGGTGAGACTTGA+AGG - chr4_1:74954913-74954932 Msa0572150:CDS 45.0%
! TTGTCTGTGTGCTGGTGTAT+TGG - chr4_1:74955221-74955240 Msa0572150:intron 45.0%
! TGTCTGTGTGCTGGTGTATT+GGG - chr4_1:74955222-74955241 Msa0572150:intron 45.0%
! TGGGATTTTGCTTCGCTTAG+GGG - chr4_1:74955241-74955260 Msa0572150:intron 45.0%
TACAGTCACCAGCTTACGTT+TGG + chr4_1:74955365-74955384 None:intergenic 45.0%
ATCCACACTCATCATAGCAC+CGG + chr4_1:74955425-74955444 None:intergenic 45.0%
TCCGATAAGAAGGGCAAAGT+TGG - chr4_1:74955481-74955500 Msa0572150:intron 45.0%
GGCAATAACTCATCAAGACC+TGG - chr4_1:74955508-74955527 Msa0572150:intron 45.0%
!!! TTTTTTTTTGGGTGGGGAGG+GGG + chr4_1:74956364-74956383 None:intergenic 45.0%
GGCCATATACCTGTTATTCC+AGG - chr4_1:74956572-74956591 Msa0572150:five_prime_UTR 45.0%
! TATATTTCTGCCACCTGGCA+TGG - chr4_1:74956686-74956705 Msa0572150:five_prime_UTR 45.0%
TGTGAATCATCAACCATGCC+AGG + chr4_1:74956702-74956721 None:intergenic 45.0%
TATCGTTGCAAAGGAAGGCA+GGG + chr4_1:74956740-74956759 None:intergenic 45.0%
TTATCGTTGCAAAGGAAGGC+AGG + chr4_1:74956741-74956760 None:intergenic 45.0%
!!! TTAATTTTAATTTTTAATTG+GGG - chr4_1:74953201-74953220 Msa0572150:intron 5.0%
!!! TTATTTTTTTTTAATTAAAG+CGG - chr4_1:74953236-74953255 Msa0572150:intron 5.0%
!! TAAAAAAAAAAAAAAAAAAG+AGG + chr4_1:74955168-74955187 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTAATTG+CGG - chr4_1:74955172-74955191 Msa0572150:CDS 5.0%
TACAAGAAGGAGGGAAACGG+CGG - chr4_1:74952733-74952752 Msa0572150:three_prime_UTR 50.0%
GAGAGAAACGCGAAACGGAA+AGG + chr4_1:74952799-74952818 None:intergenic 50.0%
GTGTTTCCACATTGCGGATG+GGG - chr4_1:74953494-74953513 Msa0572150:intron 50.0%
TGTTTCCACATTGCGGATGG+GGG - chr4_1:74953495-74953514 Msa0572150:intron 50.0%
TGGGGGGTTATAATGCACTG+AGG - chr4_1:74953512-74953531 Msa0572150:intron 50.0%
AAGGGGTTTCCCATCTCAAC+AGG + chr4_1:74953569-74953588 None:intergenic 50.0%
TGTTGAGATGGGAAACCCCT+TGG - chr4_1:74953568-74953587 Msa0572150:intron 50.0%
GAAGAAAGAAGCTCGACCAG+GGG + chr4_1:74953617-74953636 None:intergenic 50.0%
CAGAAGAAAGAAGCTCGACC+AGG + chr4_1:74953619-74953638 None:intergenic 50.0%
CTGTGAATTCCCGGTTTAGG+TGG - chr4_1:74953636-74953655 Msa0572150:intron 50.0%
TTCCCGGTTTAGGTGGTATC+TGG - chr4_1:74953643-74953662 Msa0572150:intron 50.0%
TCCCGGTTTAGGTGGTATCT+GGG - chr4_1:74953644-74953663 Msa0572150:intron 50.0%
GTCAGGAACATACTGCCTTG+TGG - chr4_1:74953675-74953694 Msa0572150:intron 50.0%
CCCTTGACACCTTGAGTATC+TGG - chr4_1:74954005-74954024 Msa0572150:CDS 50.0%
GCAATCAAACTAGGGGGGAA+GGG + chr4_1:74954049-74954068 None:intergenic 50.0%
! GATTGATGGAGGCGCATTCA+TGG + chr4_1:74954358-74954377 None:intergenic 50.0%
TCTACGATGAGTGCAAGAGG+AGG - chr4_1:74954390-74954409 Msa0572150:intron 50.0%
AAAGTCCCCCATGCATGCAA+AGG + chr4_1:74954493-74954512 None:intergenic 50.0%
TATCAGGATCAGCCCACAGA+AGG + chr4_1:74954595-74954614 None:intergenic 50.0%
GGATGGGGAGAAAATGATCG+AGG - chr4_1:74954626-74954645 Msa0572150:intron 50.0%
! GCGTCTCAGGTTGTAGAAGA+TGG - chr4_1:74955325-74955344 Msa0572150:intron 50.0%
ACCTGGAACTCCACCTCATA+AGG - chr4_1:74955525-74955544 Msa0572150:intron 50.0%
ACCTTATGAGGTGGAGTTCC+AGG + chr4_1:74955529-74955548 None:intergenic 50.0%
TCTTCCCACCCTGGAATAAC+AGG + chr4_1:74956584-74956603 None:intergenic 50.0%
AAGGTCAGTGAGCTGGATGA+TGG - chr4_1:74956635-74956654 Msa0572150:five_prime_UTR 50.0%
GAATCATCAACCATGCCAGG+TGG + chr4_1:74956699-74956718 None:intergenic 50.0%
AAGACAGTATGGCAGGGACA+TGG - chr4_1:74956764-74956783 Msa0572150:intron 50.0%
GTTTCCACATTGCGGATGGG+GGG - chr4_1:74953496-74953515 Msa0572150:intron 55.0%
ATAACCCCCCATCCGCAATG+TGG + chr4_1:74953503-74953522 None:intergenic 55.0%
GCCCAGATACCACCTAAACC+GGG + chr4_1:74953648-74953667 None:intergenic 55.0%
GGCCCAGATACCACCTAAAC+CGG + chr4_1:74953649-74953668 None:intergenic 55.0%
GTATCTGGGCCCCTTATGTC+AGG - chr4_1:74953658-74953677 Msa0572150:intron 55.0%
GGCAATCAAACTAGGGGGGA+AGG + chr4_1:74954050-74954069 None:intergenic 55.0%
TCGCAGAGAAGGCCATGATC+TGG + chr4_1:74954572-74954591 None:intergenic 55.0%
CCTTCTCTGCGACCTTCTGT+GGG - chr4_1:74954580-74954599 Msa0572150:intron 55.0%
!! TATTTTGGGGGCTGCGTCTC+AGG - chr4_1:74955312-74955331 Msa0572150:intron 55.0%
!! TGCCGGTGCTATGATGAGTG+TGG - chr4_1:74955420-74955439 Msa0572150:intron 55.0%
GACCCCGGCCCTTATGTATA+CGG - chr4_1:74956404-74956423 Msa0572150:CDS 55.0%
ACCCCGGCCCTTATGTATAC+GGG - chr4_1:74956405-74956424 Msa0572150:CDS 55.0%
ACCCGTATACATAAGGGCCG+GGG + chr4_1:74956409-74956428 None:intergenic 55.0%
GACCCGTATACATAAGGGCC+GGG + chr4_1:74956410-74956429 None:intergenic 55.0%
CGACCCGTATACATAAGGGC+CGG + chr4_1:74956411-74956430 None:intergenic 55.0%
ACACCGAGTGTGACAGCCTA+TGG - chr4_1:74956960-74956979 Msa0572150:intron 55.0%
TCGCCATAGGCTGTCACACT+CGG + chr4_1:74956966-74956985 None:intergenic 55.0%
TGTGACAGCCTATGGCGAGT+AGG - chr4_1:74956968-74956987 Msa0572150:five_prime_UTR 55.0%
GCCTTCTCTGCGACCTTCTG+TGG - chr4_1:74954579-74954598 Msa0572150:intron 60.0%
CCCACAGAAGGTCGCAGAGA+AGG + chr4_1:74954583-74954602 None:intergenic 60.0%
TCCTGTGGGAGAAGTGACCC+CGG - chr4_1:74956389-74956408 Msa0572150:CDS 60.0%
GCCGGGGTCACTTCTCCCAC+AGG + chr4_1:74956393-74956412 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 74952402 74957003 74952402 ID=Msa0572150;Name=Msa0572150
chr4_1 mRNA 74952402 74957003 74952402 ID=Msa0572150-mRNA-1;Parent=Msa0572150;Name=Msa0572150-mRNA-1;_AED=0.05;_eAED=0.05;_QI=245|1|1|1|0.5|0.2|5|395|321
chr4_1 exon 74952402 74952811 74952402 ID=Msa0572150-mRNA-1:exon:25928;Parent=Msa0572150-mRNA-1
chr4_1 exon 74953859 74954071 74953859 ID=Msa0572150-mRNA-1:exon:25927;Parent=Msa0572150-mRNA-1
chr4_1 exon 74954675 74955234 74954675 ID=Msa0572150-mRNA-1:exon:25926;Parent=Msa0572150-mRNA-1
chr4_1 exon 74956348 74956732 74956348 ID=Msa0572150-mRNA-1:exon:25925;Parent=Msa0572150-mRNA-1
chr4_1 exon 74956966 74957003 74956966 ID=Msa0572150-mRNA-1:exon:25924;Parent=Msa0572150-mRNA-1
chr4_1 five_prime_UTR 74956966 74957003 74956966 ID=Msa0572150-mRNA-1:five_prime_utr;Parent=Msa0572150-mRNA-1
chr4_1 five_prime_UTR 74956526 74956732 74956526 ID=Msa0572150-mRNA-1:five_prime_utr;Parent=Msa0572150-mRNA-1
chr4_1 CDS 74956348 74956525 74956348 ID=Msa0572150-mRNA-1:cds;Parent=Msa0572150-mRNA-1
chr4_1 CDS 74954675 74955234 74954675 ID=Msa0572150-mRNA-1:cds;Parent=Msa0572150-mRNA-1
chr4_1 CDS 74953859 74954071 74953859 ID=Msa0572150-mRNA-1:cds;Parent=Msa0572150-mRNA-1
chr4_1 CDS 74952797 74952811 74952797 ID=Msa0572150-mRNA-1:cds;Parent=Msa0572150-mRNA-1
chr4_1 three_prime_UTR 74952402 74952796 74952402 ID=Msa0572150-mRNA-1:three_prime_utr;Parent=Msa0572150-mRNA-1
Gene Sequence

>Msa0572150

ATGGATGATACGGTGCTTGATGATATCATACAGAAGCTTGTATCAGCGAAGAACGGAAGAACAACGAAGCAAGTTCATCTTACCGAGGCTGATATTCGTCAGCTTTGTACTTCTGCTAAGGAGATCTTTCTCAGTCAACCTAATCTTCTTGAACTTGAAGCTCCTATCAAAATTTGTGGAGATGTCCATGGCCAGTTTTCAGACCTTTTAAGGCTGTTCGAATACGGGGGATACCCACCTGAAGCAAATTACTTATTTCTTGGAGATTATGTTGATCGTGGTAAGCAGAGCATAGAGACAATATGCTTGCTTCTTGCATATAAAATCAAATACAAGGAGAACTTCTTTCTTCTCAGGGGCAACCATGAATGCGCCTCCATCAATCGTATTTATGGTTTCTACGATGAGTGCAAGAGGAGGTATAATGTTCGTCTCTGGAAGACGTTTACTGATTGCTTTAATTGTTTACCGGTTGCTGCTCTAGTAGATGAGAAGATCCTTTGCATGCATGGGGGACTTTCTCCTGAACTTAAAAACTTGGATCAGATACGGAATATTGCTCGCCCTATTGATGTGCCAGATCATGGCCTTCTCTGCGACCTTCTGTGGGCTGATCCTGATAAAGATCTTGAGGGATGGGGAGAAAATGATCGAGGTGTTTCATTTACATTTGGGGCTGACAAGGTTGTTGAGTTTCTTGAGCATCATGATCTTGATCTGATATGTAGAGCTCACCAGGTTGTAGAAGATGGATATGAGTTTTTTGCCAAACGTAAGCTGGTGACTGTATTCTCTGCACCAAATTACTGTGGTGAGTTTGATAATGCCGGTGCTATGATGAGTGTGGATGACTCATTGACATGCTCTTTCCAGATACTGAAGTCTTCCGATAAGAAGGGCAAAGTTGGATTTGGCAATAACTCATCAAGACCTGGAACTCCACCTCATAAGGGTGGGAAGAATTAA
Protein sequence

>Msa0572150

MDDTVLDDIIQKLVSAKNGRTTKQVHLTEADIRQLCTSAKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRYNVRLWKTFTDCFNCLPVAALVDEKILCMHGGLSPELKNLDQIRNIARPIDVPDHGLLCDLLWADPDKDLEGWGENDRGVSFTFGADKVVEFLEHHDLDLICRAHQVVEDGYEFFAKRKLVTVFSAPNYCGEFDNAGAMMSVDDSLTCSFQILKSSDKKGKVGFGNNSSRPGTPPHKGGKN*