AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0518170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0518170 MtrunA17_Chr3g0130221 99.415 342 2 0 1 342 1 342 0.0 686
Msa0518170 MtrunA17_Chr3g0104471 62.048 332 114 2 17 336 67 398 1.78e-148 424
Msa0518170 MtrunA17_Chr5g0393851 86.486 74 5 1 264 337 1 69 7.32e-35 122
Msa0518170 MtrunA17_Chr3g0114581 23.432 303 216 6 39 335 14 306 9.60e-16 77.0
Msa0518170 MtrunA17_Chr1g0160071 22.772 303 218 5 39 335 13 305 1.17e-15 77.0
Msa0518170 MtrunA17_Chr2g0317521 23.647 351 238 5 3 337 1 337 4.07e-14 72.4
Msa0518170 MtrunA17_Chr1g0149401 23.611 360 232 9 1 336 1 341 5.03e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0518170 AT2G13650.3 78.107 338 69 1 3 340 1 333 0.0 517
Msa0518170 AT2G13650.1 78.107 338 69 1 3 340 1 333 0.0 517
Msa0518170 AT2G13650.7 77.083 288 61 1 3 290 1 283 2.69e-153 432
Msa0518170 AT2G13650.2 77.083 288 61 1 3 290 1 283 2.69e-153 432
Msa0518170 AT2G13650.4 84.332 217 34 0 124 340 28 244 4.02e-126 362
Msa0518170 AT2G13650.5 84.332 217 34 0 124 340 28 244 4.02e-126 362
Msa0518170 AT2G13650.6 82.564 195 34 0 146 340 14 208 5.18e-111 322
Msa0518170 AT1G07290.1 53.177 299 113 3 41 336 79 353 1.02e-100 301
Msa0518170 AT1G21870.1 24.653 288 197 7 39 318 14 289 3.63e-15 75.9
Msa0518170 AT4G32272.1 25.217 345 226 8 10 339 17 344 1.11e-14 74.3
Msa0518170 AT1G77610.1 23.958 288 199 8 39 318 8 283 2.03e-14 73.6
Msa0518170 AT4G32272.2 25.070 359 236 9 2 339 13 359 1.77e-13 71.2
Msa0518170 AT5G19980.1 24.579 297 207 6 45 334 19 305 9.73e-13 68.6

Find 124 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACAACCCTTCCATTTC+TGG 0.079663 3_4:-70010092 None:intergenic
TGTATCTATGTTGAGCCTTC+TGG 0.107830 3_4:+70010564 Msa0518170:CDS
GATCTGTGGTATTTGATTTC+CGG 0.174220 3_4:+70014444 Msa0518170:three_prime_UTR
GATGAACATGATGAAGAAAA+AGG 0.229009 3_4:+70010037 Msa0518170:CDS
GATGACCTTCAGTGGAGTTT+TGG 0.230548 3_4:+70013781 Msa0518170:CDS
TTGAGATCTCTCCCGGATTT+TGG 0.239239 3_4:-70014392 None:intergenic
CAACACTCTTTCTTTGCCTT+TGG 0.245089 3_4:+70013450 Msa0518170:CDS
TGGATATTTCAACTCACTAT+TGG 0.261370 3_4:-70009685 None:intergenic
TTTGCCATCTGCAGTCTTGT+AGG 0.269187 3_4:+70014131 Msa0518170:intron
CTTTAAAGTTCCTACAAGTT+TGG 0.279646 3_4:+70014196 Msa0518170:CDS
AATTCCTTATACTGCTCTTC+AGG 0.279874 3_4:-70014416 None:intergenic
CATAATCAAGCCTTATTATC+TGG 0.283461 3_4:+70010121 Msa0518170:CDS
ATCTGTGGTATTTGATTTCC+GGG 0.298914 3_4:+70014445 Msa0518170:three_prime_UTR
TTCTGAGATTACCTAGCTTT+TGG 0.301861 3_4:+70013753 Msa0518170:CDS
CAGATCATTTCAGCAATAAC+TGG 0.302251 3_4:+70013047 Msa0518170:intron
TGAAGAAGAAGCACGAGTTT+TGG 0.306390 3_4:+70009624 Msa0518170:five_prime_UTR
CTGTTCGTTTGGATCTAATT+CGG 0.307824 3_4:+70014604 Msa0518170:three_prime_UTR
ATAAGCAAGTCCAGATAATA+AGG 0.308574 3_4:-70010131 None:intergenic
GTATCTATGTTGAGCCTTCT+GGG 0.310178 3_4:+70010565 Msa0518170:CDS
AACACTCTTTCTTTGCCTTT+GGG 0.312536 3_4:+70013451 Msa0518170:CDS
GTTGATTAAAGTCTGGTTTC+CGG 0.328959 3_4:+70010618 Msa0518170:CDS
AATGCAAATTGCAGGGCTTT+TGG 0.330301 3_4:+70014348 Msa0518170:intron
GGATATTTCAACTCACTATT+GGG 0.333571 3_4:-70009684 None:intergenic
CCGGTCAATGTTATATTTGT+TGG 0.334498 3_4:+70010637 Msa0518170:CDS
ATGTGGTTTCTTCATCAAAC+AGG 0.337762 3_4:+70013827 Msa0518170:CDS
GCAAAGCAATATACTAAATC+TGG 0.337794 3_4:+70013394 Msa0518170:CDS
ATTAAACTCATAATCCTTCA+TGG 0.340340 3_4:+70009820 Msa0518170:five_prime_UTR
AAACAGGGGCTACAACTTAC+AGG 0.345308 3_4:+70013843 Msa0518170:CDS
AATATCCTTGATGGTGTATC+AGG 0.361970 3_4:+70010222 Msa0518170:CDS
AGCACCACGAAGGCAGAGTC+TGG 0.363622 3_4:+70012459 Msa0518170:CDS
ATGAGTTTAATAAAGAGAAT+TGG 0.369852 3_4:-70009808 None:intergenic
CAATCCTGAAGAGCAGTATA+AGG 0.371628 3_4:+70014412 Msa0518170:exon
GCAGAGTTCTCCAAACTTGT+AGG 0.380931 3_4:-70014206 None:intergenic
TTAATCAACCTCCATGTTAG+TGG 0.382334 3_4:-70010604 None:intergenic
TGTTCGTTTGGATCTAATTC+GGG 0.395941 3_4:+70014605 Msa0518170:three_prime_UTR
CAGCCCAGACTCTGCCTTCG+TGG 0.401927 3_4:-70012463 None:intergenic
GTGGATGCAGAATTTCATTT+CGG 0.402301 3_4:+70010534 Msa0518170:intron
GCTTATTGTCTTTCCTCTTG+TGG 0.404397 3_4:+70010148 Msa0518170:CDS
CGAATTAGATCCAAACGAAC+AGG 0.408996 3_4:-70014603 None:intergenic
CTGGGCTGCTCTATTTCTAA+TGG 0.414829 3_4:+70012478 Msa0518170:CDS
TGCTAATTACAAGCATGTTT+AGG 0.418078 3_4:+70010662 Msa0518170:CDS
AAAGAAAGAGGTTCCAGAAA+TGG 0.421951 3_4:+70010079 Msa0518170:CDS
ATAAAGAGAATTGGATGAAG+AGG 0.424946 3_4:-70009799 None:intergenic
CATGAAAATGAAGTCTTCTT+CGG 0.425537 3_4:+70010012 Msa0518170:exon
AAGATACCACTCTCAGTTGC+TGG 0.429416 3_4:+70014164 Msa0518170:CDS
CATGGAGGTTGATTAAAGTC+TGG 0.433566 3_4:+70010611 Msa0518170:CDS
TAATGCTGGAATATCCTTGA+TGG 0.436279 3_4:+70010213 Msa0518170:CDS
AGAGAAATATTGAAATTTGA+GGG 0.439146 3_4:-70009774 None:intergenic
AAGAGAAATATTGAAATTTG+AGG 0.439743 3_4:-70009775 None:intergenic
TTCAGGATTGAGATCTCTCC+CGG 0.444271 3_4:-70014399 None:intergenic
CGCTTTGAATCGCGGTGGCG+CGG 0.452831 3_4:-70009971 None:intergenic
CACAAATCACACCTCTCTAA+AGG 0.456138 3_4:-70014541 None:intergenic
ACAAATCACACCTCTCTAAA+GGG 0.461401 3_4:-70014540 None:intergenic
CTAATTCGGGAAGAGTTGCT+TGG 0.470494 3_4:+70014618 Msa0518170:three_prime_UTR
CCTCATTGAAAACAAGCATC+AGG 0.493646 3_4:-70013480 None:intergenic
CCAACAAATATAACATTGAC+CGG 0.496391 3_4:-70010637 None:intergenic
CCGTATCCATGACCCTTCGT+AGG 0.502069 3_4:-70013372 None:intergenic
ACACTCAACACAGGCGGAGC+TGG 0.504574 3_4:+70009932 Msa0518170:five_prime_UTR
TAAAGAGAATTGGATGAAGA+GGG 0.505183 3_4:-70009798 None:intergenic
TTAAACTCATAATCCTTCAT+GGG 0.505292 3_4:+70009821 Msa0518170:five_prime_UTR
TGAACCCAGAAAGAAACAAA+AGG 0.507165 3_4:-70009741 None:intergenic
GAACCCAGAAAGAAACAAAA+GGG 0.507996 3_4:-70009740 None:intergenic
GAAATACATTAATGTGGCTA+TGG 0.516838 3_4:+70012373 Msa0518170:CDS
CCTACGAAGGGTCATGGATA+CGG 0.527759 3_4:+70013372 Msa0518170:CDS
TGGTTAGTGATGACCTTCAG+TGG 0.534587 3_4:+70013773 Msa0518170:CDS
GCCTTGTTTGTTTATGATCG+AGG 0.535945 3_4:-70009851 None:intergenic
GCTGACCCTACGAAGGGTCA+TGG 0.537855 3_4:+70013366 Msa0518170:intron
GTGAAGTTAGAAGTTCAACC+TGG 0.538327 3_4:+70014468 Msa0518170:three_prime_UTR
CGCGCCACCGCGATTCAAAG+CGG 0.538704 3_4:+70009972 Msa0518170:five_prime_UTR
TTGTAGGAACTTTAAAGAGA+AGG 0.549360 3_4:-70014190 None:intergenic
GATTGCATTGCTAGCAATGG+AGG 0.553491 3_4:+70014640 Msa0518170:three_prime_UTR
AACTAAAATCATTCCACAAG+AGG 0.562641 3_4:-70010161 None:intergenic
CGTATCCATGACCCTTCGTA+GGG 0.564291 3_4:-70013371 None:intergenic
TTTCGCTAGAGCCAAAATCC+GGG 0.569283 3_4:+70014381 Msa0518170:CDS
GTTGAAATATCCACCAAAGT+TGG 0.570846 3_4:+70009695 Msa0518170:five_prime_UTR
AAAGAGGTTCCAGAAATGGA+AGG 0.572735 3_4:+70010083 Msa0518170:CDS
TGACGACACCTCAAAATCCC+AGG 0.575984 3_4:-70014486 None:intergenic
ACACAGGCGGAGCTGGTGGT+CGG 0.576955 3_4:+70009939 Msa0518170:five_prime_UTR
AATTGCGCCGCTTTGAATCG+CGG 0.578945 3_4:-70009979 None:intergenic
AACTATCTCACCCTTTAGAG+AGG 0.578986 3_4:+70014530 Msa0518170:three_prime_UTR
GTCATCACTAACCAAAAGCT+AGG 0.580842 3_4:-70013764 None:intergenic
TTTCAACTGAACCACTAACA+TGG 0.581249 3_4:+70010593 Msa0518170:CDS
TTGGATTGCATTGCTAGCAA+TGG 0.583211 3_4:+70014637 Msa0518170:three_prime_UTR
CTCAACACAGGCGGAGCTGG+TGG 0.585956 3_4:+70009935 Msa0518170:five_prime_UTR
TGTGGTTTCTTCATCAAACA+GGG 0.587936 3_4:+70013828 Msa0518170:CDS
TCCTCGATCATAAACAAACA+AGG 0.590957 3_4:+70009850 Msa0518170:five_prime_UTR
GCACCACGAAGGCAGAGTCT+GGG 0.591892 3_4:+70012460 Msa0518170:CDS
GTTCATGATTACTTCTCTGA+GGG 0.593247 3_4:+70014567 Msa0518170:three_prime_UTR
CGTCAAAGAGATGATTGTAT+CGG 0.595188 3_4:+70014504 Msa0518170:three_prime_UTR
ATCATTTCAGCAATAACTGG+AGG 0.613231 3_4:+70013050 Msa0518170:CDS
CAGTTTGAAATACATTAATG+TGG 0.616131 3_4:+70012367 Msa0518170:intron
TGCGCCGCTTTGAATCGCGG+TGG 0.616443 3_4:-70009976 None:intergenic
GAATTAGATCCAAACGAACA+GGG 0.618840 3_4:-70014602 None:intergenic
AGTTCATGATTACTTCTCTG+AGG 0.619402 3_4:+70014566 Msa0518170:three_prime_UTR
TCATTTCAGCAATAACTGGA+GGG 0.623711 3_4:+70013051 Msa0518170:CDS
AAGCTAGGTAATCTCAGAAG+TGG 0.624340 3_4:-70013749 None:intergenic
AGGATGCCAGCAACTGAGAG+TGG 0.626159 3_4:-70014170 None:intergenic
TATTGCAGCTGACCCTACGA+AGG 0.633946 3_4:+70013359 Msa0518170:intron
ATATGTTGCATCTTGAGACA+AGG 0.635225 3_4:+70014787 Msa0518170:three_prime_UTR
TATGTTGCATCTTGAGACAA+GGG 0.637981 3_4:+70014788 Msa0518170:three_prime_UTR
AAATTTAAATGAGTTTACGA+TGG 0.641617 3_4:+70013417 Msa0518170:CDS
TAGACCCAAAACTCCACTGA+AGG 0.641650 3_4:-70013786 None:intergenic
TTAATGCAACTGGCTATGTG+TGG 0.643415 3_4:+70013090 Msa0518170:CDS
AATTAGATCCAAACGAACAG+GGG 0.648320 3_4:-70014601 None:intergenic
AAGAGGTTCCAGAAATGGAA+GGG 0.648638 3_4:+70010084 Msa0518170:CDS
AATTACCTGATACACCATCA+AGG 0.651962 3_4:-70010227 None:intergenic
TGAAGTTAGAAGTTCAACCT+GGG 0.655445 3_4:+70014469 Msa0518170:three_prime_UTR
CAGTTGAAACTAAACCCAGA+AGG 0.657499 3_4:-70010579 None:intergenic
CAATTAGCTTCACCTCCATG+TGG 0.658205 3_4:+70013810 Msa0518170:CDS
ATTGCAGCTGACCCTACGAA+GGG 0.668006 3_4:+70013360 Msa0518170:intron
GAACAAGTACATTTCACCAA+CGG 0.669904 3_4:-70012432 None:intergenic
AGCATCAGGAAAATTCCCAA+AGG 0.675180 3_4:-70013466 None:intergenic
AACCCAGAAAGAAACAAAAG+GGG 0.678664 3_4:-70009739 None:intergenic
ACGAATGTCATAACTGCCGT+TGG 0.688649 3_4:+70012416 Msa0518170:CDS
TTGAACTTCTAACTTCACCC+CGG 0.689216 3_4:-70014463 None:intergenic
CATCGTACTACACTCAACAC+AGG 0.696953 3_4:+70009923 Msa0518170:five_prime_UTR
TGTTTGATGAAGAAACCACA+TGG 0.697962 3_4:-70013825 None:intergenic
GTGGTTTCTTCATCAAACAG+GGG 0.705100 3_4:+70013829 Msa0518170:CDS
CAACTGAACCACTAACATGG+AGG 0.707867 3_4:+70010596 Msa0518170:CDS
CGTACTACACTCAACACAGG+CGG 0.711494 3_4:+70009926 Msa0518170:five_prime_UTR
TTGTTCAGTAAGCACCACGA+AGG 0.728813 3_4:+70012449 Msa0518170:CDS
TCTGTGGTATTTGATTTCCG+GGG 0.753153 3_4:+70014446 Msa0518170:three_prime_UTR
AAATTGTCAAGTGATACATG+AGG 0.779215 3_4:-70014724 None:intergenic
TTGATGAAGAAACCACATGG+AGG 0.813768 3_4:-70013822 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTACTATAAATATTTTTT+AGG + chr3_4:70012894-70012913 Msa0518170:intron 10.0%
!! AATCTAACATAAAAAAAAAA+AGG - chr3_4:70014682-70014701 None:intergenic 10.0%
!!! TATTTTCATATGATAATGTT+TGG + chr3_4:70010823-70010842 Msa0518170:intron 15.0%
!! CAAAAATATTTATGTTTAAG+AGG - chr3_4:70011484-70011503 None:intergenic 15.0%
!!! AAACATAAATATTTTTGTGA+CGG + chr3_4:70011487-70011506 Msa0518170:intron 15.0%
!! ATTATTTATGATAAGATACT+AGG + chr3_4:70011853-70011872 Msa0518170:intron 15.0%
!! TTATTTATGATAAGATACTA+GGG + chr3_4:70011854-70011873 Msa0518170:intron 15.0%
!!! CTTTTCTAATTATTGTTTAT+TGG + chr3_4:70011977-70011996 Msa0518170:intron 15.0%
!!! ATTTTATTTCTCTACTTTTT+AGG + chr3_4:70012693-70012712 Msa0518170:intron 15.0%
!!! TCCAATTTAATATATTGATT+GGG - chr3_4:70013960-70013979 None:intergenic 15.0%
!! AGAGAAATATTGAAATTTGA+GGG - chr3_4:70009777-70009796 None:intergenic 20.0%
!! AAGAGAAATATTGAAATTTG+AGG - chr3_4:70009778-70009797 None:intergenic 20.0%
!! ATGAGTTTAATAAAGAGAAT+TGG - chr3_4:70009811-70009830 None:intergenic 20.0%
!!! ATAGTTTAATGATGATGTAA+AGG + chr3_4:70010500-70010519 Msa0518170:intron 20.0%
!!! TTAATTTGTTTATCCAAACA+AGG + chr3_4:70011085-70011104 Msa0518170:intron 20.0%
!! TCTCAAACTTAATAACTAAT+AGG - chr3_4:70011111-70011130 None:intergenic 20.0%
!!! TTAAAATGAAAGTACAATAG+AGG + chr3_4:70011381-70011400 Msa0518170:intron 20.0%
!!! TAAAATGAAAGTACAATAGA+GGG + chr3_4:70011382-70011401 Msa0518170:intron 20.0%
!! TAAAACCAAATCCATATTAA+TGG - chr3_4:70011815-70011834 None:intergenic 20.0%
!! TCTAATTATTGTTTATTGGT+AGG + chr3_4:70011981-70012000 Msa0518170:intron 20.0%
!!! AATAATTTTCTTTTTGCTGA+TGG + chr3_4:70012039-70012058 Msa0518170:intron 20.0%
!!! ATAATTTTCTTTTTGCTGAT+GGG + chr3_4:70012040-70012059 Msa0518170:intron 20.0%
!! TTAAAAAAAGTAGTAGTATG+CGG + chr3_4:70012082-70012101 Msa0518170:intron 20.0%
!!! TTTTTAGGTTACATAAATGA+TGG + chr3_4:70012708-70012727 Msa0518170:intron 20.0%
!! ATTTAAAAACATGAGATGTT+TGG - chr3_4:70012995-70013014 None:intergenic 20.0%
!! AAATTTAAATGAGTTTACGA+TGG + chr3_4:70013417-70013436 Msa0518170:CDS 20.0%
!! TTGCAAAACGAAAAAATATA+GGG - chr3_4:70013689-70013708 None:intergenic 20.0%
!! TTTGCAAAACGAAAAAATAT+AGG - chr3_4:70013690-70013709 None:intergenic 20.0%
!! ATTAATGTATTTCAATTGAC+AGG + chr3_4:70013726-70013745 Msa0518170:intron 20.0%
!! AAATTAAATTTGTCGCATTT+AGG - chr3_4:70013926-70013945 None:intergenic 20.0%
!! TCCCAATCAATATATTAAAT+TGG + chr3_4:70013956-70013975 Msa0518170:intron 20.0%
!! GTCCAATTTAATATATTGAT+TGG - chr3_4:70013961-70013980 None:intergenic 20.0%
!!! ATAATTTTTCTGATATAGCA+CGG - chr3_4:70014081-70014100 None:intergenic 20.0%
! ATTAAACTCATAATCCTTCA+TGG + chr3_4:70009820-70009839 Msa0518170:five_prime_UTR 25.0%
! TTAAACTCATAATCCTTCAT+GGG + chr3_4:70009821-70009840 Msa0518170:five_prime_UTR 25.0%
! ATGAACATGATGAAGAAAAA+GGG + chr3_4:70010038-70010057 Msa0518170:CDS 25.0%
!!! TCTAGTTATGATTTTAATGC+TGG + chr3_4:70010199-70010218 Msa0518170:CDS 25.0%
! AGAAATAGCTTATACATAAG+TGG - chr3_4:70010341-70010360 None:intergenic 25.0%
!! TCATATGATAATGTTTGGAT+TGG + chr3_4:70010828-70010847 Msa0518170:intron 25.0%
!! TAGTTATTAAGTTTGAGATG+TGG + chr3_4:70011113-70011132 Msa0518170:intron 25.0%
!! AAAATGAAAGTACAATAGAG+GGG + chr3_4:70011383-70011402 Msa0518170:intron 25.0%
! TCTTGCTTAAATTCTACATT+TGG - chr3_4:70011413-70011432 None:intergenic 25.0%
! TTTAAGCAAGATAGATGAAA+TGG + chr3_4:70011422-70011441 Msa0518170:intron 25.0%
!! TAATTTTCTATGAGATTGAG+TGG + chr3_4:70011527-70011546 Msa0518170:intron 25.0%
!! AAAGCATTAAAGAGAAGTTA+GGG + chr3_4:70011641-70011660 Msa0518170:intron 25.0%
! GTTCAATAGTTAGAGATAAA+AGG + chr3_4:70011758-70011777 Msa0518170:intron 25.0%
! ATTAGATTTCAAAAAACTGG+AGG - chr3_4:70011941-70011960 None:intergenic 25.0%
! GAGATTAGATTTCAAAAAAC+TGG - chr3_4:70011944-70011963 None:intergenic 25.0%
!!! GAAACACTATTCCTATTTTT+GGG + chr3_4:70012181-70012200 Msa0518170:intron 25.0%
!!! AAACACTATTCCTATTTTTG+GGG + chr3_4:70012182-70012201 Msa0518170:intron 25.0%
!! ATTTTTCCAGTCTCAATTTA+TGG + chr3_4:70012268-70012287 Msa0518170:intron 25.0%
!! CAGTTTGAAATACATTAATG+TGG + chr3_4:70012367-70012386 Msa0518170:intron 25.0%
!!! TGTTTTACCTTTTTAAGTTC+TGG + chr3_4:70012581-70012600 Msa0518170:intron 25.0%
! AAACAAACCAGAACTTAAAA+AGG - chr3_4:70012591-70012610 None:intergenic 25.0%
! TACAATAAAGCAGTATATGT+TGG - chr3_4:70012644-70012663 None:intergenic 25.0%
! GAGAAATAAAATATTTCCCA+CGG - chr3_4:70012685-70012704 None:intergenic 25.0%
! CAACTATATCATACTCAATT+TGG - chr3_4:70012796-70012815 None:intergenic 25.0%
GGATATTTCAACTCACTATT+GGG - chr3_4:70009687-70009706 None:intergenic 30.0%
TGGATATTTCAACTCACTAT+TGG - chr3_4:70009688-70009707 None:intergenic 30.0%
!! TTGAAAAAAGGTACCAACTT+TGG - chr3_4:70009711-70009730 None:intergenic 30.0%
TAAAGAGAATTGGATGAAGA+GGG - chr3_4:70009801-70009820 None:intergenic 30.0%
ATAAAGAGAATTGGATGAAG+AGG - chr3_4:70009802-70009821 None:intergenic 30.0%
CATGAAAATGAAGTCTTCTT+CGG + chr3_4:70010012-70010031 Msa0518170:exon 30.0%
GATGAACATGATGAAGAAAA+AGG + chr3_4:70010037-70010056 Msa0518170:CDS 30.0%
TTGGAAAAAAGCAAAGAAAG+AGG + chr3_4:70010067-70010086 Msa0518170:CDS 30.0%
!! CATAATCAAGCCTTATTATC+TGG + chr3_4:70010121-70010140 Msa0518170:CDS 30.0%
ATAAGCAAGTCCAGATAATA+AGG - chr3_4:70010134-70010153 None:intergenic 30.0%
AACTAAAATCATTCCACAAG+AGG - chr3_4:70010164-70010183 None:intergenic 30.0%
AGAAGAAAACACAGAAAAAG+GGG - chr3_4:70010266-70010285 None:intergenic 30.0%
GAGAAGAAAACACAGAAAAA+GGG - chr3_4:70010267-70010286 None:intergenic 30.0%
AGAGAAGAAAACACAGAAAA+AGG - chr3_4:70010268-70010287 None:intergenic 30.0%
! TGTGTTTTCTTCTCTAACTT+AGG + chr3_4:70010273-70010292 Msa0518170:intron 30.0%
AATAAGCCATTTATCCAAAC+AGG - chr3_4:70010300-70010319 None:intergenic 30.0%
AGCTTATACATAAGTGGTTA+TGG - chr3_4:70010335-70010354 None:intergenic 30.0%
TCAAATAAGTCAATCCAATC+AGG + chr3_4:70010464-70010483 Msa0518170:intron 30.0%
CATTAAACTATACAGATCCA+AGG - chr3_4:70010491-70010510 None:intergenic 30.0%
! TGTAAAGGTTCATACTTTTG+TGG + chr3_4:70010515-70010534 Msa0518170:intron 30.0%
CCAACAAATATAACATTGAC+CGG - chr3_4:70010640-70010659 None:intergenic 30.0%
TGCTAATTACAAGCATGTTT+AGG + chr3_4:70010662-70010681 Msa0518170:CDS 30.0%
! GTATGAAGTCTTTAACTTTG+AGG + chr3_4:70010684-70010703 Msa0518170:intron 30.0%
ATATGTCAATCATCTTCCAA+AGG + chr3_4:70010740-70010759 Msa0518170:intron 30.0%
TATGTCAATCATCTTCCAAA+GGG + chr3_4:70010741-70010760 Msa0518170:intron 30.0%
! ACTGTTTTCACAAGATATCT+TGG - chr3_4:70010965-70010984 None:intergenic 30.0%
!! AATAACTAATAGGCCTTGTT+TGG - chr3_4:70011101-70011120 None:intergenic 30.0%
AAATTGTCAGACTTGTAATC+TGG - chr3_4:70011219-70011238 None:intergenic 30.0%
AAATTGTCAGACTTGTAATC+TGG - chr3_4:70011219-70011238 None:intergenic 30.0%
! AAATGAAAGTACAATAGAGG+GGG + chr3_4:70011384-70011403 Msa0518170:intron 30.0%
!! GAAAGCATTAAAGAGAAGTT+AGG + chr3_4:70011640-70011659 Msa0518170:intron 30.0%
CAATAGTTAGAGATAAAAGG+AGG + chr3_4:70011761-70011780 Msa0518170:intron 30.0%
CCAAATCCATATTAATGGTT+TGG - chr3_4:70011810-70011829 None:intergenic 30.0%
CCAAACCATTAATATGGATT+TGG + chr3_4:70011807-70011826 Msa0518170:intron 30.0%
TTTGATTAATTTCCCCATCA+TGG + chr3_4:70011882-70011901 Msa0518170:intron 30.0%
ATTGTTTATTGGTAGGTACT+AGG + chr3_4:70011988-70012007 Msa0518170:intron 30.0%
GATTCCATTTATGAGTATTC+TGG + chr3_4:70012117-70012136 Msa0518170:intron 30.0%
TACACCAGAATACTCATAAA+TGG - chr3_4:70012124-70012143 None:intergenic 30.0%
AAAATAGGAATAGTGTTTCC+TGG - chr3_4:70012180-70012199 None:intergenic 30.0%
! GGAAACACTATTCCTATTTT+TGG + chr3_4:70012180-70012199 Msa0518170:intron 30.0%
GTAAATCCATAAATTGAGAC+TGG - chr3_4:70012277-70012296 None:intergenic 30.0%
GAAATACATTAATGTGGCTA+TGG + chr3_4:70012373-70012392 Msa0518170:CDS 30.0%
ACATTATTCCACATCAAAGT+GGG - chr3_4:70012554-70012573 None:intergenic 30.0%
TACATTATTCCACATCAAAG+TGG - chr3_4:70012555-70012574 None:intergenic 30.0%
! TGCTTTATTGTAGTTTCCAA+AGG + chr3_4:70012652-70012671 Msa0518170:intron 30.0%
!! TGAAGTTGAATTGGTGTTTT+AGG + chr3_4:70012732-70012751 Msa0518170:intron 30.0%
TAACAATGAAGAGTTTCAAG+TGG - chr3_4:70012930-70012949 None:intergenic 30.0%
GTAAAGCACATATCCAAAAT+TGG - chr3_4:70012973-70012992 None:intergenic 30.0%
!!! ATTTTATTTGAAGAGCATCC+AGG - chr3_4:70013228-70013247 None:intergenic 30.0%
TTTACACTTCTTAACAGATG+AGG + chr3_4:70013247-70013266 Msa0518170:intron 30.0%
TTAACAGATGAGGTTTAGTT+TGG + chr3_4:70013257-70013276 Msa0518170:intron 30.0%
GCAAAGCAATATACTAAATC+TGG + chr3_4:70013394-70013413 Msa0518170:CDS 30.0%
TGATTTCACAGACAAAATGT+GGG - chr3_4:70013536-70013555 None:intergenic 30.0%
ATGATTTCACAGACAAAATG+TGG - chr3_4:70013537-70013556 None:intergenic 30.0%
GTCTGTGAAATCATTATATG+AGG + chr3_4:70013543-70013562 Msa0518170:intron 30.0%
! ACAAACAAAAAGCACATTTC+TGG - chr3_4:70013637-70013656 None:intergenic 30.0%
TTTATCTGAAGAGCCATAAT+TGG - chr3_4:70013883-70013902 None:intergenic 30.0%
AATTGGACTTCGTGAATAAT+AGG + chr3_4:70013973-70013992 Msa0518170:intron 30.0%
ATTTAATGATGCATACACCA+CGG + chr3_4:70013996-70014015 Msa0518170:intron 30.0%
! TTGTAGGAACTTTAAAGAGA+AGG - chr3_4:70014193-70014212 None:intergenic 30.0%
!! CTTTAAAGTTCCTACAAGTT+TGG + chr3_4:70014196-70014215 Msa0518170:CDS 30.0%
! AACTCTGCTAGCATTTTATT+TGG + chr3_4:70014221-70014240 Msa0518170:CDS 30.0%
ACAAGTTTGTGTTACATTCT+TGG + chr3_4:70014307-70014326 Msa0518170:intron 30.0%
! TAAGGAATTTTTCTGATCTG+TGG + chr3_4:70014430-70014449 Msa0518170:three_prime_UTR 30.0%
AAATTGTCAAGTGATACATG+AGG - chr3_4:70014727-70014746 None:intergenic 30.0%
GTTGAAATATCCACCAAAGT+TGG + chr3_4:70009695-70009714 Msa0518170:five_prime_UTR 35.0%
!! AAAAAAGGTACCAACTTTGG+TGG - chr3_4:70009708-70009727 None:intergenic 35.0%
!! GGGGTTCTGAATTTGAAAAA+AGG - chr3_4:70009723-70009742 None:intergenic 35.0%
!! AACCCCTTTTGTTTCTTTCT+GGG + chr3_4:70009737-70009756 Msa0518170:five_prime_UTR 35.0%
AACCCAGAAAGAAACAAAAG+GGG - chr3_4:70009742-70009761 None:intergenic 35.0%
GAACCCAGAAAGAAACAAAA+GGG - chr3_4:70009743-70009762 None:intergenic 35.0%
TGAACCCAGAAAGAAACAAA+AGG - chr3_4:70009744-70009763 None:intergenic 35.0%
TCCTCGATCATAAACAAACA+AGG + chr3_4:70009850-70009869 Msa0518170:five_prime_UTR 35.0%
TGAAGAAAAAGGGAAGTTGT+TGG + chr3_4:70010048-70010067 Msa0518170:CDS 35.0%
AAAGAAAGAGGTTCCAGAAA+TGG + chr3_4:70010079-70010098 Msa0518170:CDS 35.0%
TAATGCTGGAATATCCTTGA+TGG + chr3_4:70010213-70010232 Msa0518170:CDS 35.0%
!! AATATCCTTGATGGTGTATC+AGG + chr3_4:70010222-70010241 Msa0518170:CDS 35.0%
AATTACCTGATACACCATCA+AGG - chr3_4:70010230-70010249 None:intergenic 35.0%
TTAGGTCCTGTTTGGATAAA+TGG + chr3_4:70010291-70010310 Msa0518170:intron 35.0%
GTGGATGCAGAATTTCATTT+CGG + chr3_4:70010534-70010553 Msa0518170:intron 35.0%
TTTCAACTGAACCACTAACA+TGG + chr3_4:70010593-70010612 Msa0518170:CDS 35.0%
TTAATCAACCTCCATGTTAG+TGG - chr3_4:70010607-70010626 None:intergenic 35.0%
! GTTGATTAAAGTCTGGTTTC+CGG + chr3_4:70010618-70010637 Msa0518170:CDS 35.0%
CCGGTCAATGTTATATTTGT+TGG + chr3_4:70010637-70010656 Msa0518170:CDS 35.0%
ATGTCAATCATCTTCCAAAG+GGG + chr3_4:70010742-70010761 Msa0518170:intron 35.0%
ACATGTTCATAAGCTGTGTT+TGG + chr3_4:70010921-70010940 Msa0518170:intron 35.0%
GTGGAGATAACACACAATTT+CGG + chr3_4:70011132-70011151 Msa0518170:intron 35.0%
ATAACACACAATTTCGGAAG+TGG + chr3_4:70011138-70011157 Msa0518170:intron 35.0%
! TGATGTATTTTGTGACAGAG+AGG + chr3_4:70011456-70011475 Msa0518170:intron 35.0%
! AGAGTATTACAGTAGAAGAG+TGG + chr3_4:70011589-70011608 Msa0518170:intron 35.0%
GAGTATTACAGTAGAAGAGT+GGG + chr3_4:70011590-70011609 Msa0518170:intron 35.0%
AATGATAAGAGTCTCAGCTT+CGG + chr3_4:70011669-70011688 Msa0518170:intron 35.0%
AATTTCCCCATCATGGAAAA+TGG + chr3_4:70011889-70011908 Msa0518170:intron 35.0%
GAACAAGTACATTTCACCAA+CGG - chr3_4:70012435-70012454 None:intergenic 35.0%
ATTATTCCACATCAAAGTGG+GGG - chr3_4:70012552-70012571 None:intergenic 35.0%
CATTATTCCACATCAAAGTG+GGG - chr3_4:70012553-70012572 None:intergenic 35.0%
AATGATGGCTGAAGTTGAAT+TGG + chr3_4:70012723-70012742 Msa0518170:intron 35.0%
ATATAGTTGCGAGACAGTTA+CGG + chr3_4:70012807-70012826 Msa0518170:intron 35.0%
TTGATGTTTGGGAATACTCA+GGG + chr3_4:70012830-70012849 Msa0518170:intron 35.0%
! ACATATCCAAAATTGGTGCT+TGG - chr3_4:70012966-70012985 None:intergenic 35.0%
GAAATGATCTGCAAGTGAAA+GGG - chr3_4:70013038-70013057 None:intergenic 35.0%
TGAAATGATCTGCAAGTGAA+AGG - chr3_4:70013039-70013058 None:intergenic 35.0%
CAGATCATTTCAGCAATAAC+TGG + chr3_4:70013047-70013066 Msa0518170:intron 35.0%
ATCATTTCAGCAATAACTGG+AGG + chr3_4:70013050-70013069 Msa0518170:CDS 35.0%
TCATTTCAGCAATAACTGGA+GGG + chr3_4:70013051-70013070 Msa0518170:CDS 35.0%
! GATCTCTCTTTTAATGCAAC+TGG + chr3_4:70013080-70013099 Msa0518170:CDS 35.0%
AACACTCTTTCTTTGCCTTT+GGG + chr3_4:70013451-70013470 Msa0518170:CDS 35.0%
!!! TTCTGAGATTACCTAGCTTT+TGG + chr3_4:70013753-70013772 Msa0518170:CDS 35.0%
TGTTTGATGAAGAAACCACA+TGG - chr3_4:70013828-70013847 None:intergenic 35.0%
ATGTGGTTTCTTCATCAAAC+AGG + chr3_4:70013827-70013846 Msa0518170:CDS 35.0%
TGTGGTTTCTTCATCAAACA+GGG + chr3_4:70013828-70013847 Msa0518170:CDS 35.0%
GTGGTCAGAAATTCCAATTA+TGG + chr3_4:70013867-70013886 Msa0518170:intron 35.0%
AAGGTAGAAATGCAAATTGC+AGG + chr3_4:70014340-70014359 Msa0518170:intron 35.0%
AGGTAGAAATGCAAATTGCA+GGG + chr3_4:70014341-70014360 Msa0518170:intron 35.0%
AATTCCTTATACTGCTCTTC+AGG - chr3_4:70014419-70014438 None:intergenic 35.0%
! GATCTGTGGTATTTGATTTC+CGG + chr3_4:70014444-70014463 Msa0518170:three_prime_UTR 35.0%
! ATCTGTGGTATTTGATTTCC+GGG + chr3_4:70014445-70014464 Msa0518170:three_prime_UTR 35.0%
TGAAGTTAGAAGTTCAACCT+GGG + chr3_4:70014469-70014488 Msa0518170:three_prime_UTR 35.0%
CGTCAAAGAGATGATTGTAT+CGG + chr3_4:70014504-70014523 Msa0518170:three_prime_UTR 35.0%
ACAAATCACACCTCTCTAAA+GGG - chr3_4:70014543-70014562 None:intergenic 35.0%
AGTTCATGATTACTTCTCTG+AGG + chr3_4:70014566-70014585 Msa0518170:three_prime_UTR 35.0%
GTTCATGATTACTTCTCTGA+GGG + chr3_4:70014567-70014586 Msa0518170:three_prime_UTR 35.0%
AATTAGATCCAAACGAACAG+GGG - chr3_4:70014604-70014623 None:intergenic 35.0%
GAATTAGATCCAAACGAACA+GGG - chr3_4:70014605-70014624 None:intergenic 35.0%
CTGTTCGTTTGGATCTAATT+CGG + chr3_4:70014604-70014623 Msa0518170:three_prime_UTR 35.0%
TGTTCGTTTGGATCTAATTC+GGG + chr3_4:70014605-70014624 Msa0518170:three_prime_UTR 35.0%
ATATGTTGCATCTTGAGACA+AGG + chr3_4:70014787-70014806 Msa0518170:three_prime_UTR 35.0%
TATGTTGCATCTTGAGACAA+GGG + chr3_4:70014788-70014807 Msa0518170:three_prime_UTR 35.0%
!! TGAAGAAGAAGCACGAGTTT+TGG + chr3_4:70009624-70009643 Msa0518170:five_prime_UTR 40.0%
!! GAACCCCTTTTGTTTCTTTC+TGG + chr3_4:70009736-70009755 Msa0518170:five_prime_UTR 40.0%
!! GCCTTGTTTGTTTATGATCG+AGG - chr3_4:70009854-70009873 None:intergenic 40.0%
AAAGAGGTTCCAGAAATGGA+AGG + chr3_4:70010083-70010102 Msa0518170:CDS 40.0%
AAGAGGTTCCAGAAATGGAA+GGG + chr3_4:70010084-70010103 Msa0518170:CDS 40.0%
AACAACAACCCTTCCATTTC+TGG - chr3_4:70010095-70010114 None:intergenic 40.0%
GCTTATTGTCTTTCCTCTTG+TGG + chr3_4:70010148-70010167 Msa0518170:CDS 40.0%
TCTCTAACTTAGGTCCTGTT+TGG + chr3_4:70010283-70010302 Msa0518170:intron 40.0%
! AGCTGCTTTCGTAAGTTATC+TGG + chr3_4:70010407-70010426 Msa0518170:intron 40.0%
! GCTGCTTTCGTAAGTTATCT+GGG + chr3_4:70010408-70010427 Msa0518170:intron 40.0%
TGTATCTATGTTGAGCCTTC+TGG + chr3_4:70010564-70010583 Msa0518170:CDS 40.0%
GTATCTATGTTGAGCCTTCT+GGG + chr3_4:70010565-70010584 Msa0518170:CDS 40.0%
CAGTTGAAACTAAACCCAGA+AGG - chr3_4:70010582-70010601 None:intergenic 40.0%
! CATGGAGGTTGATTAAAGTC+TGG + chr3_4:70010611-70010630 Msa0518170:CDS 40.0%
! AAAGTGAAGCACCTGTAAGA+TGG + chr3_4:70011717-70011736 Msa0518170:intron 40.0%
! AAGTGAAGCACCTGTAAGAT+GGG + chr3_4:70011718-70011737 Msa0518170:intron 40.0%
CTATTGAACATGCTCCAACT+AGG - chr3_4:70011747-70011766 None:intergenic 40.0%
TTAGAGATAAAAGGAGGCCA+AGG + chr3_4:70011767-70011786 Msa0518170:intron 40.0%
! CCATATTAATGGTTTGGCCA+TGG - chr3_4:70011804-70011823 None:intergenic 40.0%
CCATGGCCAAACCATTAATA+TGG + chr3_4:70011801-70011820 Msa0518170:intron 40.0%
!! CAAAGCCATTTTCCATGATG+GGG - chr3_4:70011897-70011916 None:intergenic 40.0%
!! CCAAAGCCATTTTCCATGAT+GGG - chr3_4:70011898-70011917 None:intergenic 40.0%
!! ACCAAAGCCATTTTCCATGA+TGG - chr3_4:70011899-70011918 None:intergenic 40.0%
CTTTATGCTGATATTCGTCC+AGG + chr3_4:70012159-70012178 Msa0518170:intron 40.0%
TTGCTTACATCTCCTACAAC+CGG + chr3_4:70012610-70012629 Msa0518170:intron 40.0%
! AGACAGTTACGGTTGATGTT+TGG + chr3_4:70012818-70012837 Msa0518170:intron 40.0%
! GACAGTTACGGTTGATGTTT+GGG + chr3_4:70012819-70012838 Msa0518170:intron 40.0%
GTTGATGTTTGGGAATACTC+AGG + chr3_4:70012829-70012848 Msa0518170:intron 40.0%
! CTTGAACCAAGCACCAATTT+TGG + chr3_4:70012957-70012976 Msa0518170:intron 40.0%
TTAATGCAACTGGCTATGTG+TGG + chr3_4:70013090-70013109 Msa0518170:CDS 40.0%
!! AGTTGAGTGTGCTGATTAGT+TGG + chr3_4:70013322-70013341 Msa0518170:intron 40.0%
CAACACTCTTTCTTTGCCTT+TGG + chr3_4:70013450-70013469 Msa0518170:CDS 40.0%
AGCATCAGGAAAATTCCCAA+AGG - chr3_4:70013469-70013488 None:intergenic 40.0%
CCTCATTGAAAACAAGCATC+AGG - chr3_4:70013483-70013502 None:intergenic 40.0%
!! CCTGATGCTTGTTTTCAATG+AGG + chr3_4:70013480-70013499 Msa0518170:CDS 40.0%
AAGCTAGGTAATCTCAGAAG+TGG - chr3_4:70013752-70013771 None:intergenic 40.0%
GTCATCACTAACCAAAAGCT+AGG - chr3_4:70013767-70013786 None:intergenic 40.0%
! ATGACCTTCAGTGGAGTTTT+GGG + chr3_4:70013782-70013801 Msa0518170:CDS 40.0%
TTGATGAAGAAACCACATGG+AGG - chr3_4:70013825-70013844 None:intergenic 40.0%
GTGGTTTCTTCATCAAACAG+GGG + chr3_4:70013829-70013848 Msa0518170:CDS 40.0%
!! TTTGACTTGAGTTAGAACCG+TGG - chr3_4:70014016-70014035 None:intergenic 40.0%
GCAGATGGCAAACTAGTTAT+TGG - chr3_4:70014123-70014142 None:intergenic 40.0%
! AATGCAAATTGCAGGGCTTT+TGG + chr3_4:70014348-70014367 Msa0518170:intron 40.0%
! TTTTCGCTAGAGCCAAAATC+CGG + chr3_4:70014380-70014399 Msa0518170:CDS 40.0%
CAATCCTGAAGAGCAGTATA+AGG + chr3_4:70014412-70014431 Msa0518170:exon 40.0%
! TCTGTGGTATTTGATTTCCG+GGG + chr3_4:70014446-70014465 Msa0518170:three_prime_UTR 40.0%
TTGAACTTCTAACTTCACCC+CGG - chr3_4:70014466-70014485 None:intergenic 40.0%
GTGAAGTTAGAAGTTCAACC+TGG + chr3_4:70014468-70014487 Msa0518170:three_prime_UTR 40.0%
! AAGTTCAACCTGGGATTTTG+AGG + chr3_4:70014478-70014497 Msa0518170:three_prime_UTR 40.0%
! AACTATCTCACCCTTTAGAG+AGG + chr3_4:70014530-70014549 Msa0518170:three_prime_UTR 40.0%
CACAAATCACACCTCTCTAA+AGG - chr3_4:70014544-70014563 None:intergenic 40.0%
!! CTTCTCTGAGGGATAGTTTT+TGG + chr3_4:70014578-70014597 Msa0518170:three_prime_UTR 40.0%
CGAATTAGATCCAAACGAAC+AGG - chr3_4:70014606-70014625 None:intergenic 40.0%
TTGGATTGCATTGCTAGCAA+TGG + chr3_4:70014637-70014656 Msa0518170:three_prime_UTR 40.0%
! AGGGTCACATTTTCATGTGA+AGG + chr3_4:70014807-70014826 Msa0518170:three_prime_UTR 40.0%
TCGAGGAGAAAAACCCATGA+AGG - chr3_4:70009837-70009856 None:intergenic 45.0%
CATCGTACTACACTCAACAC+AGG + chr3_4:70009923-70009942 Msa0518170:five_prime_UTR 45.0%
AGTCAATCCAATCAGGTCCT+TGG + chr3_4:70010471-70010490 Msa0518170:intron 45.0%
TACAGATCCAAGGACCTGAT+TGG - chr3_4:70010481-70010500 None:intergenic 45.0%
CAACTGAACCACTAACATGG+AGG + chr3_4:70010596-70010615 Msa0518170:CDS 45.0%
TCATCTTCCAAAGGGGATGA+TGG + chr3_4:70010749-70010768 Msa0518170:intron 45.0%
! GGAGGCAGATAATTTGTGAC+TGG + chr3_4:70010770-70010789 Msa0518170:intron 45.0%
AACTAGGCTACCCATCTTAC+AGG - chr3_4:70011731-70011750 None:intergenic 45.0%
TGTAAGATGGGTAGCCTAGT+TGG + chr3_4:70011730-70011749 Msa0518170:intron 45.0%
CCCATCATGGAAAATGGCTT+TGG + chr3_4:70011895-70011914 Msa0518170:intron 45.0%
CTTGTGTGCTCCCCAAAAAT+AGG - chr3_4:70012195-70012214 None:intergenic 45.0%
!! ACACAAGCTCTGAACTCTTG+AGG + chr3_4:70012208-70012227 Msa0518170:intron 45.0%
ACGAATGTCATAACTGCCGT+TGG + chr3_4:70012416-70012435 Msa0518170:CDS 45.0%
TTGTTCAGTAAGCACCACGA+AGG + chr3_4:70012449-70012468 Msa0518170:CDS 45.0%
!! CTGGGCTGCTCTATTTCTAA+TGG + chr3_4:70012478-70012497 Msa0518170:CDS 45.0%
!! CAAAGTGGGGGTATCAAACA+CGG - chr3_4:70012540-70012559 None:intergenic 45.0%
TTGATACCCCCACTTTGATG+TGG + chr3_4:70012543-70012562 Msa0518170:intron 45.0%
GTATATGTTGGCAACAGCAC+CGG - chr3_4:70012632-70012651 None:intergenic 45.0%
TTTCCAAAGGTCGAATACCG+TGG + chr3_4:70012665-70012684 Msa0518170:intron 45.0%
TTCCAAAGGTCGAATACCGT+GGG + chr3_4:70012666-70012685 Msa0518170:intron 45.0%
CTTACCATTCTGTTACTGCC+TGG + chr3_4:70013207-70013226 Msa0518170:intron 45.0%
TGGTTAGTGATGACCTTCAG+TGG + chr3_4:70013773-70013792 Msa0518170:CDS 45.0%
! GATGACCTTCAGTGGAGTTT+TGG + chr3_4:70013781-70013800 Msa0518170:CDS 45.0%
TAGACCCAAAACTCCACTGA+AGG - chr3_4:70013789-70013808 None:intergenic 45.0%
! CAATTAGCTTCACCTCCATG+TGG + chr3_4:70013810-70013829 Msa0518170:CDS 45.0%
AAACAGGGGCTACAACTTAC+AGG + chr3_4:70013843-70013862 Msa0518170:CDS 45.0%
! TTTGCCATCTGCAGTCTTGT+AGG + chr3_4:70014131-70014150 Msa0518170:intron 45.0%
AAGATACCACTCTCAGTTGC+TGG + chr3_4:70014164-70014183 Msa0518170:CDS 45.0%
GCAGAGTTCTCCAAACTTGT+AGG - chr3_4:70014209-70014228 None:intergenic 45.0%
CATTCTTGGTTCAACGCTGA+AGG + chr3_4:70014321-70014340 Msa0518170:intron 45.0%
TTTCGCTAGAGCCAAAATCC+GGG + chr3_4:70014381-70014400 Msa0518170:CDS 45.0%
! TTGAGATCTCTCCCGGATTT+TGG - chr3_4:70014395-70014414 None:intergenic 45.0%
TTCAGGATTGAGATCTCTCC+CGG - chr3_4:70014402-70014421 None:intergenic 45.0%
CTAATTCGGGAAGAGTTGCT+TGG + chr3_4:70014618-70014637 Msa0518170:three_prime_UTR 45.0%
GATTGCATTGCTAGCAATGG+AGG + chr3_4:70014640-70014659 Msa0518170:three_prime_UTR 45.0%
CGTACTACACTCAACACAGG+CGG + chr3_4:70009926-70009945 Msa0518170:five_prime_UTR 50.0%
! AATTGCGCCGCTTTGAATCG+CGG - chr3_4:70009982-70010001 None:intergenic 50.0%
! TCTTCCAAAGGGGATGATGG+AGG + chr3_4:70010752-70010771 Msa0518170:intron 50.0%
AGGAGGCCAAGGAAAACTAG+AGG + chr3_4:70011778-70011797 Msa0518170:intron 50.0%
!!! CCATGGCCTCTAGTTTTCCT+TGG - chr3_4:70011787-70011806 None:intergenic 50.0%
CCAAGGAAAACTAGAGGCCA+TGG + chr3_4:70011784-70011803 Msa0518170:intron 50.0%
TTCCCACGGTATTCGACCTT+TGG - chr3_4:70012671-70012690 None:intergenic 50.0%
GCATCCAGGCAGTAACAGAA+TGG - chr3_4:70013214-70013233 None:intergenic 50.0%
TATTGCAGCTGACCCTACGA+AGG + chr3_4:70013359-70013378 Msa0518170:intron 50.0%
ATTGCAGCTGACCCTACGAA+GGG + chr3_4:70013360-70013379 Msa0518170:intron 50.0%
CGTATCCATGACCCTTCGTA+GGG - chr3_4:70013374-70013393 None:intergenic 50.0%
CCTACGAAGGGTCATGGATA+CGG + chr3_4:70013372-70013391 Msa0518170:CDS 50.0%
CGAACCTACAAGACTGCAGA+TGG - chr3_4:70014138-70014157 None:intergenic 50.0%
! CAAATTGCAGGGCTTTTGGC+AGG + chr3_4:70014352-70014371 Msa0518170:intron 50.0%
TGACGACACCTCAAAATCCC+AGG - chr3_4:70014489-70014508 None:intergenic 50.0%
!!! GTTTTTGGCCCCTGTTCGTT+TGG + chr3_4:70014593-70014612 Msa0518170:three_prime_UTR 50.0%
TCTGCCTCCATCATCCCCTT+TGG - chr3_4:70010759-70010778 None:intergenic 55.0%
!! TTGGCAACAGCACCGGTTGT+AGG - chr3_4:70012625-70012644 None:intergenic 55.0%
CCGTATCCATGACCCTTCGT+AGG - chr3_4:70013375-70013394 None:intergenic 55.0%
GGGGCTACAACTTACAGGTG+TGG + chr3_4:70013848-70013867 Msa0518170:intron 55.0%
AGGATGCCAGCAACTGAGAG+TGG - chr3_4:70014173-70014192 None:intergenic 55.0%
ACACTCAACACAGGCGGAGC+TGG + chr3_4:70009932-70009951 Msa0518170:five_prime_UTR 60.0%
AGCACCACGAAGGCAGAGTC+TGG + chr3_4:70012459-70012478 Msa0518170:CDS 60.0%
GCACCACGAAGGCAGAGTCT+GGG + chr3_4:70012460-70012479 Msa0518170:CDS 60.0%
GCTGACCCTACGAAGGGTCA+TGG + chr3_4:70013366-70013385 Msa0518170:intron 60.0%
CTCAACACAGGCGGAGCTGG+TGG + chr3_4:70009935-70009954 Msa0518170:five_prime_UTR 65.0%
ACACAGGCGGAGCTGGTGGT+CGG + chr3_4:70009939-70009958 Msa0518170:five_prime_UTR 65.0%
! CGCTTTGAATCGCGGTGGCG+CGG - chr3_4:70009974-70009993 None:intergenic 65.0%
CGCGCCACCGCGATTCAAAG+CGG + chr3_4:70009972-70009991 Msa0518170:five_prime_UTR 65.0%
! TGCGCCGCTTTGAATCGCGG+TGG - chr3_4:70009979-70009998 None:intergenic 65.0%
CAGCCCAGACTCTGCCTTCG+TGG - chr3_4:70012466-70012485 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 70009516 70014910 70009516 ID=Msa0518170;Name=Msa0518170
chr3_4 mRNA 70009516 70014910 70009516 ID=Msa0518170-mRNA-1;Parent=Msa0518170;Name=Msa0518170-mRNA-1;_AED=0.07;_eAED=0.07;_QI=497|1|1|1|1|1|8|490|342
chr3_4 exon 70009516 70010243 70009516 ID=Msa0518170-mRNA-1:exon:18822;Parent=Msa0518170-mRNA-1
chr3_4 exon 70010544 70010683 70010544 ID=Msa0518170-mRNA-1:exon:18823;Parent=Msa0518170-mRNA-1
chr3_4 exon 70012370 70012499 70012370 ID=Msa0518170-mRNA-1:exon:18824;Parent=Msa0518170-mRNA-1
chr3_4 exon 70013050 70013148 70013050 ID=Msa0518170-mRNA-1:exon:18825;Parent=Msa0518170-mRNA-1
chr3_4 exon 70013367 70013521 70013367 ID=Msa0518170-mRNA-1:exon:18826;Parent=Msa0518170-mRNA-1
chr3_4 exon 70013748 70013864 70013748 ID=Msa0518170-mRNA-1:exon:18827;Parent=Msa0518170-mRNA-1
chr3_4 exon 70014145 70014242 70014145 ID=Msa0518170-mRNA-1:exon:18828;Parent=Msa0518170-mRNA-1
chr3_4 exon 70014362 70014910 70014362 ID=Msa0518170-mRNA-1:exon:18829;Parent=Msa0518170-mRNA-1
chr3_4 five_prime_UTR 70009516 70010012 70009516 ID=Msa0518170-mRNA-1:five_prime_utr;Parent=Msa0518170-mRNA-1
chr3_4 CDS 70010013 70010243 70010013 ID=Msa0518170-mRNA-1:cds;Parent=Msa0518170-mRNA-1
chr3_4 CDS 70010544 70010683 70010544 ID=Msa0518170-mRNA-1:cds;Parent=Msa0518170-mRNA-1
chr3_4 CDS 70012370 70012499 70012370 ID=Msa0518170-mRNA-1:cds;Parent=Msa0518170-mRNA-1
chr3_4 CDS 70013050 70013148 70013050 ID=Msa0518170-mRNA-1:cds;Parent=Msa0518170-mRNA-1
chr3_4 CDS 70013367 70013521 70013367 ID=Msa0518170-mRNA-1:cds;Parent=Msa0518170-mRNA-1
chr3_4 CDS 70013748 70013864 70013748 ID=Msa0518170-mRNA-1:cds;Parent=Msa0518170-mRNA-1
chr3_4 CDS 70014145 70014242 70014145 ID=Msa0518170-mRNA-1:cds;Parent=Msa0518170-mRNA-1
chr3_4 CDS 70014362 70014420 70014362 ID=Msa0518170-mRNA-1:cds;Parent=Msa0518170-mRNA-1
chr3_4 three_prime_UTR 70014421 70014910 70014421 ID=Msa0518170-mRNA-1:three_prime_utr;Parent=Msa0518170-mRNA-1
Gene Sequence

>Msa0518170

ATGAAAATGAAGTCTTCTTCGGATGATGAACATGATGAAGAAAAAGGGAAGTTGTTGGAAAAAAGCAAAGAAAGAGGTTCCAGAAATGGAAGGGTTGTTGTTAAAGTTCATAATCAAGCCTTATTATCTGGACTTGCTTATTGTCTTTCCTCTTGTGGAATGATTTTAGTTAACAAATTTGTACTTTCTAGTTATGATTTTAATGCTGGAATATCCTTGATGGTGTATCAGAATTTCATTTCGGTGATCATTGTATCTATGTTGAGCCTTCTGGGTTTAGTTTCAACTGAACCACTAACATGGAGGTTGATTAAAGTCTGGTTTCCGGTCAATGTTATATTTGTTGGAATGCTAATTACAAGCATGTTTAGTTTGAAATACATTAATGTGGCTATGGTGACAGTCTTGAAGAATGTTACGAATGTCATAACTGCCGTTGGTGAAATGTACTTGTTCAGTAAGCACCACGAAGGCAGAGTCTGGGCTGCTCTATTTCTAATGATCATTTCAGCAATAACTGGAGGGATTACTGATCTCTCTTTTAATGCAACTGGCTATGTGTGGCAGACACTAAATTGTTTCTTAACTGCATCATATTCTCTGACCCTACGAAGGGTCATGGATACGGCAAAGCAATATACTAAATCTGGAAATTTAAATGAGTTTACGATGGTCTTGTTGAACAACACTCTTTCTTTGCCTTTGGGAATTTTCCTGATGCTTGTTTTCAATGAGGCTGATTATCTCTTAAGAACGCCACTTCTGAGATTACCTAGCTTTTGGTTAGTGATGACCTTCAGTGGAGTTTTGGGTCTAGCAATTAGCTTCACCTCCATGTGGTTTCTTCATCAAACAGGGGCTACAACTTACAGTCTTGTAGGTTCGCTGAATAAGATACCACTCTCAGTTGCTGGCATCCTTCTCTTTAAAGTTCCTACAAGTTTGGAGAACTCTGCTAGCATTTTATTTGGGCTTTTGGCAGGAGTACTTTTCGCTAGAGCCAAAATCCGGGAGAGATCTCAATCCTGA

Protein sequence

>Msa0518170

MKMKSSSDDEHDEEKGKLLEKSKERGSRNGRVVVKVHNQALLSGLAYCLSSCGMILVNKFVLSSYDFNAGISLMVYQNFISVIIVSMLSLLGLVSTEPLTWRLIKVWFPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFSKHHEGRVWAALFLMIISAITGGITDLSFNATGYVWQTLNCFLTASYSLTLRRVMDTAKQYTKSGNLNEFTMVLLNNTLSLPLGIFLMLVFNEADYLLRTPLLRLPSFWLVMTFSGVLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASILFGLLAGVLFARAKIRERSQS*