Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050200 | sp|Q08448|LPL1_YEAST | 25.769 | 260 | 157 | 9 | 27 | 275 | 2 | 236 | 4.74e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050200 | G7IDH3 | 98.588 | 354 | 5 | 0 | 1 | 354 | 1 | 354 | 0.0 | 722 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004840 | Msa0050200 | 0.810665 | 1.029691e-50 | -8.615850e-47 |
| Msa0018940 | Msa0050200 | 0.984675 | 2.962149e-161 | -8.615850e-47 |
| Msa0037880 | Msa0050200 | 0.806353 | 8.570645e-50 | -8.615850e-47 |
| Msa0050200 | Msa0052030 | 0.810434 | 1.154891e-50 | -8.615850e-47 |
| Msa0050200 | Msa0065950 | 0.817424 | 3.321469e-52 | -8.615850e-47 |
| Msa0050200 | Msa0078420 | 0.806911 | 6.534526e-50 | -8.615850e-47 |
| Msa0050200 | Msa0112690 | 0.970039 | 5.141386e-131 | -8.615850e-47 |
| Msa0050200 | Msa0183010 | -0.819231 | 1.294364e-52 | -8.615850e-47 |
| Msa0050200 | Msa0219240 | 0.818104 | 2.332663e-52 | -8.615850e-47 |
| Msa0050200 | Msa0230640 | -0.825292 | 5.075898e-54 | -8.615850e-47 |
| Msa0050200 | Msa0278900 | 0.805638 | 1.211908e-49 | -8.615850e-47 |
| Msa0050200 | Msa0296980 | -0.807774 | 4.288651e-50 | -8.615850e-47 |
| Msa0050200 | Msa0303150 | 0.805365 | 1.382725e-49 | -8.615850e-47 |
| Msa0050200 | Msa0337590 | 0.808964 | 2.390464e-50 | -8.615850e-47 |
| Msa0050200 | Msa0385840 | 0.802203 | 6.270664e-49 | -8.615850e-47 |
| Msa0050200 | Msa0387280 | 0.813648 | 2.301058e-51 | -8.615850e-47 |
| Msa0050200 | Msa0412840 | 0.816428 | 5.558985e-52 | -8.615850e-47 |
| Msa0050200 | Msa0457510 | 0.810348 | 1.205108e-50 | -8.615850e-47 |
| Msa0050200 | Msa0490140 | 0.808237 | 3.419107e-50 | -8.615850e-47 |
| Msa0050200 | Msa0518170 | 0.816122 | 6.507795e-52 | -8.615850e-47 |
| Msa0050200 | Msa0521740 | 0.804705 | 1.900317e-49 | -8.615850e-47 |
| Msa0050200 | Msa0572150 | 0.805510 | 1.289507e-49 | -8.615850e-47 |
| Msa0050200 | Msa0610130 | 0.806174 | 9.349426e-50 | -8.615850e-47 |
| Msa0050200 | Msa0610180 | 0.810798 | 9.636002e-51 | -8.615850e-47 |
| Msa0050200 | Msa0643320 | 0.835951 | 1.244435e-56 | -8.615850e-47 |
| Msa0050200 | Msa0683140 | 0.821155 | 4.693400e-53 | -8.615850e-47 |
| Msa0050200 | Msa0683600 | 0.812717 | 3.682968e-51 | -8.615850e-47 |
| Msa0050200 | Msa0703910 | 0.806198 | 9.241099e-50 | -8.615850e-47 |
| Msa0050200 | Msa0747270 | 0.810090 | 1.369938e-50 | -8.615850e-47 |
| Msa0050200 | Msa0801730 | 0.804372 | 2.229775e-49 | -8.615850e-47 |
| Msa0050200 | Msa0817460 | 0.818213 | 2.203602e-52 | -8.615850e-47 |
| Msa0050200 | Msa0948320 | 0.812347 | 4.438359e-51 | -8.615850e-47 |
| Msa0050200 | Msa0970480 | 0.810772 | 9.763119e-51 | -8.615850e-47 |
| Msa0050200 | Msa0973100 | 0.807743 | 4.355254e-50 | -8.615850e-47 |
| Msa0050200 | Msa0994370 | 0.813973 | 1.951921e-51 | -8.615850e-47 |
| Msa0050200 | Msa1001390 | 0.803536 | 3.326491e-49 | -8.615850e-47 |
| Msa0050200 | Msa1082250 | 0.802493 | 5.464994e-49 | -8.615850e-47 |
| Msa0050200 | Msa1107190 | 0.807284 | 5.450212e-50 | -8.615850e-47 |
| Msa0050200 | Msa1111870 | 0.823567 | 1.291799e-53 | -8.615850e-47 |
| Msa0050200 | Msa1186360 | 0.815978 | 7.006996e-52 | -8.615850e-47 |
| Msa0050200 | Msa1215920 | 0.806015 | 1.010046e-49 | -8.615850e-47 |
| Msa0050200 | Msa1263290 | -0.825364 | 4.881209e-54 | -8.615850e-47 |
| Msa0050200 | Msa1270660 | 0.821230 | 4.508931e-53 | -8.615850e-47 |
| Msa0050200 | Msa1270730 | 0.810065 | 1.387275e-50 | -8.615850e-47 |
| Msa0050200 | Msa1393770 | -0.803918 | 2.771924e-49 | -8.615850e-47 |
| Msa0050200 | Msa1394310 | 0.803799 | 2.933888e-49 | -8.615850e-47 |
| Msa0050200 | Msa1403340 | 0.803233 | 3.844881e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050200 | MtrunA17_Chr1g0170451 | 98.588 | 354 | 5 | 0 | 1 | 354 | 1 | 354 | 0.0 | 722 |
| Msa0050200 | MtrunA17_Chr0c06g0493481 | 53.509 | 342 | 133 | 6 | 31 | 352 | 81 | 416 | 8.04e-120 | 352 |
| Msa0050200 | MtrunA17_Chr4g0072801 | 53.107 | 354 | 145 | 6 | 20 | 353 | 58 | 410 | 4.65e-119 | 350 |
| Msa0050200 | MtrunA17_Chr3g0140681 | 50.289 | 346 | 155 | 6 | 23 | 352 | 53 | 397 | 9.21e-109 | 323 |
| Msa0050200 | MtrunA17_Chr8g0379001 | 41.620 | 358 | 182 | 5 | 20 | 350 | 79 | 436 | 3.25e-88 | 272 |
| Msa0050200 | MtrunA17_Chr2g0283771 | 42.598 | 331 | 168 | 3 | 30 | 338 | 83 | 413 | 6.41e-84 | 261 |
| Msa0050200 | MtrunA17_Chr7g0214251 | 45.882 | 85 | 37 | 2 | 98 | 173 | 42 | 126 | 3.36e-16 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050200 | AT5G51180.2 | 71.875 | 352 | 96 | 2 | 2 | 352 | 6 | 355 | 0.0 | 539 |
| Msa0050200 | AT5G51180.1 | 71.875 | 352 | 96 | 2 | 2 | 352 | 6 | 355 | 0.0 | 539 |
| Msa0050200 | AT4G25770.1 | 52.991 | 351 | 156 | 6 | 8 | 352 | 69 | 416 | 3.27e-123 | 361 |
| Msa0050200 | AT4G25770.2 | 51.289 | 349 | 161 | 6 | 8 | 350 | 69 | 414 | 3.11e-116 | 343 |
| Msa0050200 | AT1G10040.1 | 48.870 | 354 | 159 | 5 | 14 | 352 | 64 | 410 | 5.36e-113 | 335 |
| Msa0050200 | AT1G10040.2 | 48.214 | 336 | 152 | 5 | 14 | 334 | 64 | 392 | 1.78e-104 | 313 |
| Msa0050200 | AT1G29120.1 | 40.517 | 348 | 186 | 3 | 23 | 350 | 94 | 440 | 4.35e-86 | 267 |
| Msa0050200 | AT1G29120.2 | 40.517 | 348 | 186 | 3 | 23 | 350 | 94 | 440 | 4.35e-86 | 267 |
| Msa0050200 | AT1G29120.8 | 40.517 | 348 | 186 | 3 | 23 | 350 | 95 | 441 | 5.26e-86 | 267 |
| Msa0050200 | AT1G29120.5 | 40.115 | 349 | 187 | 4 | 23 | 350 | 94 | 441 | 7.36e-83 | 259 |
| Msa0050200 | AT1G29120.7 | 40.356 | 337 | 180 | 3 | 23 | 339 | 94 | 429 | 1.15e-81 | 255 |
| Msa0050200 | AT1G29120.3 | 43.939 | 264 | 145 | 2 | 23 | 284 | 94 | 356 | 3.95e-73 | 232 |
| Msa0050200 | AT1G29120.4 | 43.939 | 264 | 145 | 2 | 23 | 284 | 94 | 356 | 6.37e-73 | 231 |
| Msa0050200 | AT1G29120.6 | 43.111 | 225 | 125 | 2 | 23 | 245 | 94 | 317 | 1.46e-60 | 197 |
Find 118 sgRNAs with CRISPR-Local
Find 399 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGAGACTTTACGCATATT+TGG | 0.190717 | 1_2:+3891296 | None:intergenic |
| CAAATCTCTGTCTGCTACTA+TGG | 0.221832 | 1_2:+3887515 | None:intergenic |
| TGCTGCTCATAGTGTAATTC+AGG | 0.244054 | 1_2:-3887494 | Msa0050200:intron |
| AAGTTCATTATTACGTCTAA+TGG | 0.252273 | 1_2:+3889005 | None:intergenic |
| AGGAATGTGAAAGTTACTTT+TGG | 0.287208 | 1_2:+3893227 | None:intergenic |
| AACTGTTGCTACACCTCATC+TGG | 0.300273 | 1_2:-3891120 | Msa0050200:CDS |
| CAATTCTTCACCTCAACTAA+TGG | 0.303591 | 1_2:+3887104 | None:intergenic |
| TGCTGACTCAATTACTTTCA+TGG | 0.310425 | 1_2:+3887001 | None:intergenic |
| CACCTTCCATATGTGAGATT+TGG | 0.316169 | 1_2:+3887343 | None:intergenic |
| GAAGAGATCGGGAAGGAAAA+AGG | 0.326840 | 1_2:+3892971 | None:intergenic |
| TTGCAAGTGTTGTTATTCAT+TGG | 0.328297 | 1_2:-3889393 | Msa0050200:CDS |
| TGGGAAATGAAGTCGGTGTT+TGG | 0.347341 | 1_2:+3892949 | None:intergenic |
| ACATCATCTATGTCAGAAAA+TGG | 0.353937 | 1_2:+3887295 | None:intergenic |
| TCGATGGAAGCCGCGATGTT+TGG | 0.354256 | 1_2:-3892861 | Msa0050200:CDS |
| CTTGCAGAGGAGCTGGTAAC+AGG | 0.354687 | 1_2:-3887577 | Msa0050200:intron |
| AACGAACCTATTCAGGATTC+AGG | 0.363980 | 1_2:-3891206 | Msa0050200:CDS |
| TCCTGAATAGGTTCGTTTCC+AGG | 0.365379 | 1_2:+3891212 | None:intergenic |
| GGAATGAAAATTCAGTAGAT+TGG | 0.367176 | 1_2:+3892929 | None:intergenic |
| GGAAGAAGAATCAGAGGATT+TGG | 0.376802 | 1_2:+3892834 | None:intergenic |
| TTATTGCCTGAATCCTGAAT+AGG | 0.376991 | 1_2:+3891200 | None:intergenic |
| TTCATTCCTCGTTGATCCTA+TGG | 0.380939 | 1_2:-3892914 | Msa0050200:exon |
| ACCTGGAAACGAACCTATTC+AGG | 0.394728 | 1_2:-3891213 | Msa0050200:CDS |
| ATGCTATTGGGAAGCTGTAT+AGG | 0.395975 | 1_2:-3891238 | Msa0050200:CDS |
| AACAGTCTTTCTTCCTTCTC+AGG | 0.400523 | 1_2:-3893141 | Msa0050200:five_prime_UTR |
| CTACACCTCATCTGGGGTCA+AGG | 0.407726 | 1_2:-3891112 | Msa0050200:CDS |
| ACATTCAGTTGGAGGATTAG+TGG | 0.411370 | 1_2:-3891267 | Msa0050200:CDS |
| AAGACTGTTGTAAGAGTAAA+GGG | 0.412632 | 1_2:+3893155 | None:intergenic |
| TGTTAAAGAGCTTCCAGATA+AGG | 0.422694 | 1_2:-3892589 | Msa0050200:CDS |
| TTAGTGGCACGATATGCTAT+TGG | 0.426585 | 1_2:-3891251 | Msa0050200:CDS |
| CATCTTGTTGTCATGGTCAA+TGG | 0.429580 | 1_2:-3892805 | Msa0050200:CDS |
| TGTGACTTACTGAAAGATAA+TGG | 0.436010 | 1_2:-3888816 | Msa0050200:CDS |
| CTAGATGGTGTGGACGTAAT+GGG | 0.437976 | 1_2:-3891931 | Msa0050200:CDS |
| GAAAGTAAGGTGGACTCAAT+AGG | 0.438104 | 1_2:-3891176 | Msa0050200:CDS |
| CAAAGACCAAATCTCACATA+TGG | 0.440636 | 1_2:-3887349 | Msa0050200:CDS |
| GTTCTTGCAGTTCAAAGGAT+TGG | 0.440746 | 1_2:-3892632 | Msa0050200:intron |
| GAATGAAAATTCAGTAGATT+GGG | 0.448910 | 1_2:+3892930 | None:intergenic |
| CTCAATTACTTTCATGGAAG+GGG | 0.448966 | 1_2:+3887007 | None:intergenic |
| GGACGTAATGGGCGAGAGAT+TGG | 0.454747 | 1_2:-3891920 | Msa0050200:CDS |
| TTCAGGCAATAAAGAAAGTA+AGG | 0.457167 | 1_2:-3891189 | Msa0050200:CDS |
| TAGTGGCACGATATGCTATT+GGG | 0.457957 | 1_2:-3891250 | Msa0050200:CDS |
| ACTAGATGGTGTGGACGTAA+TGG | 0.463599 | 1_2:-3891932 | Msa0050200:CDS |
| GTGTCTAAGCATACACTAGA+TGG | 0.465275 | 1_2:-3891946 | Msa0050200:CDS |
| AACATCGCGGCTTCCATCGA+TGG | 0.466052 | 1_2:+3892864 | None:intergenic |
| CGCCGACCATCTTGTTGTCA+TGG | 0.471162 | 1_2:-3892812 | Msa0050200:CDS |
| GTCATGGTCAATGGAATTCT+CGG | 0.471929 | 1_2:-3892796 | Msa0050200:CDS |
| GGGGTCAAGGGGCAATAAGC+AGG | 0.473817 | 1_2:-3891099 | Msa0050200:intron |
| GAAAATGCGAAGAGTTTGAA+TGG | 0.474440 | 1_2:+3893044 | None:intergenic |
| TTTATTTCACATTCAGTTGG+AGG | 0.476703 | 1_2:-3891275 | Msa0050200:CDS |
| TGTTTGTTCTTGCAGTTCAA+AGG | 0.477270 | 1_2:-3892637 | Msa0050200:intron |
| CATTGCGCTCTTTCAAACGT+CGG | 0.480963 | 1_2:-3889179 | Msa0050200:CDS |
| GTCGGTGTTTGGAAGAGATC+GGG | 0.482621 | 1_2:+3892960 | None:intergenic |
| CAGGTTTGTCTTCTGTGTCA+TGG | 0.483977 | 1_2:-3887558 | Msa0050200:CDS |
| AATGGCTCTGACAAGATAGA+AGG | 0.486489 | 1_2:-3888798 | Msa0050200:intron |
| TTCCTTCATCGTCATCGGTA+AGG | 0.488148 | 1_2:+3889341 | None:intergenic |
| AAACGATGGGGTAGTTATGT+GGG | 0.489975 | 1_2:+3893105 | None:intergenic |
| ATTGCGCTCTTTCAAACGTC+GGG | 0.490034 | 1_2:-3889178 | Msa0050200:CDS |
| AAAGACTGTTGTAAGAGTAA+AGG | 0.492269 | 1_2:+3893154 | None:intergenic |
| TCATTTATTTCACATTCAGT+TGG | 0.492843 | 1_2:-3891278 | Msa0050200:CDS |
| ATGAAAACTTGCAGAGGAGC+TGG | 0.494911 | 1_2:-3887584 | Msa0050200:intron |
| TTCCTTACCGATGACGATGA+AGG | 0.495815 | 1_2:-3889343 | Msa0050200:CDS |
| TGTTGCAGGATGGAAACAAC+CGG | 0.503853 | 1_2:-3887148 | Msa0050200:intron |
| AGGTTTGTCTTCTGTGTCAT+GGG | 0.507004 | 1_2:-3887557 | Msa0050200:CDS |
| GAAACGATGGGGTAGTTATG+TGG | 0.507816 | 1_2:+3893104 | None:intergenic |
| ACATACATAATACATTGTTA+AGG | 0.508732 | 1_2:+3887061 | None:intergenic |
| TCAATCATGCGTTTGAGCAA+TGG | 0.509628 | 1_2:+3889313 | None:intergenic |
| TACACCTCATCTGGGGTCAA+GGG | 0.526067 | 1_2:-3891111 | Msa0050200:CDS |
| AATAGGTACAATATGTGGCC+TGG | 0.533865 | 1_2:-3891159 | Msa0050200:CDS |
| ACAAAATTCTCCATTAGTTG+AGG | 0.537109 | 1_2:-3887114 | Msa0050200:three_prime_UTR |
| GACTCAATTACTTTCATGGA+AGG | 0.538661 | 1_2:+3887005 | None:intergenic |
| AAACTTAAGATATCGTTGGC+TGG | 0.544097 | 1_2:-3889038 | Msa0050200:intron |
| GTAGTTGTTGTTACCTGAGA+AGG | 0.544864 | 1_2:+3893128 | None:intergenic |
| ACTGTTGCTACACCTCATCT+GGG | 0.546236 | 1_2:-3891119 | Msa0050200:CDS |
| TCGGGTTATATATTCAAATG+TGG | 0.550231 | 1_2:-3889160 | Msa0050200:CDS |
| ATTGAACTCTTAGGTCATTG+AGG | 0.551531 | 1_2:-3891333 | Msa0050200:intron |
| AGTCGGTGTTTGGAAGAGAT+CGG | 0.556225 | 1_2:+3892959 | None:intergenic |
| TGCTCTTCATATACAACATG+TGG | 0.557368 | 1_2:+3888864 | None:intergenic |
| TTGCCCCTTGACCCCAGATG+AGG | 0.558459 | 1_2:+3891107 | None:intergenic |
| TAGCAATATAAGCTTTGCAA+AGG | 0.559858 | 1_2:-3887244 | Msa0050200:intron |
| ATGTGTATGATATGTAGATC+AGG | 0.563849 | 1_2:-3887038 | Msa0050200:three_prime_UTR |
| TGATTTGAATGATGAAACGA+TGG | 0.565975 | 1_2:+3893091 | None:intergenic |
| CGGGTTATATATTCAAATGT+GGG | 0.568217 | 1_2:-3889159 | Msa0050200:CDS |
| TTACGAAATTCATTGCCTCC+AGG | 0.577026 | 1_2:+3891141 | None:intergenic |
| ACTCAATTACTTTCATGGAA+GGG | 0.578158 | 1_2:+3887006 | None:intergenic |
| CGCATGATTGAAGACTATGA+TGG | 0.582406 | 1_2:-3889301 | Msa0050200:CDS |
| GACTCAATAGGTACAATATG+TGG | 0.583136 | 1_2:-3891164 | Msa0050200:CDS |
| ATCATGCGTTTGAGCAATGG+AGG | 0.583660 | 1_2:+3889316 | None:intergenic |
| GGGAAGCTGTATAGGCCACC+TGG | 0.595506 | 1_2:-3891230 | Msa0050200:CDS |
| GGGCGAGAGATTGGCAGAGG+AGG | 0.597828 | 1_2:-3891911 | Msa0050200:intron |
| GACCATGACAACAAGATGGT+CGG | 0.605131 | 1_2:+3892810 | None:intergenic |
| GACCAAATCTCACATATGGA+AGG | 0.605327 | 1_2:-3887345 | Msa0050200:CDS |
| AAAGGATTGGAAATTTGCGT+CGG | 0.611436 | 1_2:-3892619 | Msa0050200:CDS |
| AATGGGCGAGAGATTGGCAG+AGG | 0.611661 | 1_2:-3891914 | Msa0050200:CDS |
| CATCGGTAAGGAAAAGATGC+CGG | 0.614066 | 1_2:+3889353 | None:intergenic |
| ACGTAATAATGAACTTCCAA+AGG | 0.614206 | 1_2:-3888998 | Msa0050200:intron |
| GATTTGAATGATGAAACGAT+GGG | 0.615005 | 1_2:+3893092 | None:intergenic |
| ACACCTCATCTGGGGTCAAG+GGG | 0.616689 | 1_2:-3891110 | Msa0050200:CDS |
| CACACATCGTTCTTCTCCAT+AGG | 0.619034 | 1_2:+3892898 | None:intergenic |
| AGTAGATTGGGAAATGAAGT+CGG | 0.619814 | 1_2:+3892942 | None:intergenic |
| GTCGGCGGAAGAAGAATCAG+AGG | 0.622314 | 1_2:+3892828 | None:intergenic |
| TGCACATCGGAATCCATCGA+TGG | 0.622851 | 1_2:-3892877 | Msa0050200:CDS |
| GCAACAATATTATCATAATG+TGG | 0.629097 | 1_2:-3886930 | Msa0050200:three_prime_UTR |
| TGTATATGAAGAGCATTGCA+AGG | 0.629600 | 1_2:-3888856 | Msa0050200:CDS |
| TAAGCATACACTAGATGGTG+TGG | 0.631739 | 1_2:-3891941 | Msa0050200:CDS |
| CATTGACCATGACAACAAGA+TGG | 0.636800 | 1_2:+3892806 | None:intergenic |
| TGGTCAATGGAATTCTCGGA+AGG | 0.650694 | 1_2:-3892792 | Msa0050200:intron |
| AGGCAATAAAGAAAGTAAGG+TGG | 0.653905 | 1_2:-3891186 | Msa0050200:CDS |
| AACGATGGGGTAGTTATGTG+GGG | 0.657383 | 1_2:+3893106 | None:intergenic |
| GAAGAACGATGTGTGCACAT+CGG | 0.677135 | 1_2:-3892890 | Msa0050200:CDS |
| CATGACAACAAGATGGTCGG+CGG | 0.691898 | 1_2:+3892813 | None:intergenic |
| TGAATAGGTTCGTTTCCAGG+TGG | 0.692678 | 1_2:+3891215 | None:intergenic |
| AGGTACAATATGTGGCCTGG+AGG | 0.694202 | 1_2:-3891156 | Msa0050200:CDS |
| CTGTTGCTACACCTCATCTG+GGG | 0.704440 | 1_2:-3891118 | Msa0050200:CDS |
| GTGTTTGGAAGAGATCGGGA+AGG | 0.712651 | 1_2:+3892964 | None:intergenic |
| CTGTTGTAAGAGTAAAGGGG+CGG | 0.730147 | 1_2:+3893159 | None:intergenic |
| ATTTGGAACTCCAAACATCG+CGG | 0.732445 | 1_2:+3892851 | None:intergenic |
| ATTTGAATGATGAAACGATG+GGG | 0.744796 | 1_2:+3893093 | None:intergenic |
| AGACTGTTGTAAGAGTAAAG+GGG | 0.757636 | 1_2:+3893156 | None:intergenic |
| TCTTCTCCATAGGATCAACG+AGG | 0.827529 | 1_2:+3892908 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAACAATTAAAATAAAA+TGG | + | chr1_2:3889353-3889372 | None:intergenic | 10.0% |
| !!! | TTTCTTTTTTAATTTTTGAA+TGG | - | chr1_2:3889825-3889844 | Msa0050200:intron | 10.0% |
| !! | GTAATTTATATTAATATGTA+AGG | - | chr1_2:3889884-3889903 | Msa0050200:intron | 10.0% |
| !!! | TTTCTTTTTTAATTTTTGAA+TGG | - | chr1_2:3889825-3889844 | Msa0050200:intron | 10.0% |
| !!! | TTTCTTTTTTAATTTTTGAA+TGG | - | chr1_2:3889825-3889844 | Msa0050200:intron | 10.0% |
| !! | GTAATTTATATTAATATGTA+AGG | - | chr1_2:3889884-3889903 | Msa0050200:intron | 10.0% |
| !!! | TTTCTTTTTTAATTTTTGAA+TGG | - | chr1_2:3889825-3889844 | Msa0050200:intron | 10.0% |
| !!! | ATTGTTATTTATTTTTTTAG+AGG | - | chr1_2:3892420-3892439 | Msa0050200:intron | 10.0% |
| !!! | AAAAAAATCTTTTGTTTACT+CGG | - | chr1_2:3887911-3887930 | Msa0050200:intron | 15.0% |
| !! | TATAATATATGTGACTAATA+AGG | + | chr1_2:3888315-3888334 | None:intergenic | 15.0% |
| !!! | TAATATACTGTTTTATTTGA+AGG | + | chr1_2:3888670-3888689 | None:intergenic | 15.0% |
| !!! | TATTTTAATTGTTTTTCTTC+TGG | - | chr1_2:3889356-3889375 | Msa0050200:CDS | 15.0% |
| !! | ATCATTATGAAGATAATATT+AGG | + | chr1_2:3889429-3889448 | None:intergenic | 15.0% |
| !! | TAGAAAATTATAGATAAATG+TGG | - | chr1_2:3889556-3889575 | Msa0050200:intron | 15.0% |
| !! | AATAATGTATATATAGGATA+TGG | + | chr1_2:3889798-3889817 | None:intergenic | 15.0% |
| !!! | TGTTAGTTATAATTTTTGAA+TGG | - | chr1_2:3889852-3889871 | Msa0050200:intron | 15.0% |
| !! | AATAATGTATATATAGGATA+TGG | + | chr1_2:3889798-3889817 | None:intergenic | 15.0% |
| !!! | TGTTAGTTATAATTTTTGAA+TGG | - | chr1_2:3889852-3889871 | Msa0050200:intron | 15.0% |
| !! | TAGTAGTAAATTAATATGTA+AGG | - | chr1_2:3890006-3890025 | Msa0050200:intron | 15.0% |
| !! | AGTAGTAAATTAATATGTAA+GGG | - | chr1_2:3890007-3890026 | Msa0050200:intron | 15.0% |
| !! | AATAATGTATATATAGGATA+TGG | + | chr1_2:3889798-3889817 | None:intergenic | 15.0% |
| !!! | TGTTAGTTATAATTTTTGAA+TGG | - | chr1_2:3889852-3889871 | Msa0050200:intron | 15.0% |
| !! | AATAATGTATATATAGGATA+TGG | + | chr1_2:3889798-3889817 | None:intergenic | 15.0% |
| !!! | TGTTAGTTATAATTTTTGAA+TGG | - | chr1_2:3889852-3889871 | Msa0050200:intron | 15.0% |
| !! | CAAATAAAAATATATGCAAT+AGG | + | chr1_2:3891050-3891069 | None:intergenic | 15.0% |
| !!! | CTATTGCATATATTTTTATT+TGG | - | chr1_2:3891048-3891067 | Msa0050200:intron | 15.0% |
| !!! | CATTTGTTTTAAGAAAAATA+TGG | + | chr1_2:3891355-3891374 | None:intergenic | 15.0% |
| !!! | TGTACATTTTAAATGATATA+TGG | - | chr1_2:3891410-3891429 | Msa0050200:intron | 15.0% |
| !!! | TTATTTTGATGTAATCTAAT+TGG | - | chr1_2:3893170-3893189 | Msa0050200:five_prime_UTR | 15.0% |
| !! | AGAATTAATAAAAACTATCA+AGG | - | chr1_2:3893220-3893239 | Msa0050200:five_prime_UTR | 15.0% |
| !!! | GATGTATTTGTTATTGTAAT+TGG | - | chr1_2:3887403-3887422 | Msa0050200:intron | 20.0% |
| !!! | ATTGAAATTTTGAGATTTTG+TGG | - | chr1_2:3887426-3887445 | Msa0050200:intron | 20.0% |
| !! | TAATAAGGCAATATAATCTA+TGG | + | chr1_2:3888300-3888319 | None:intergenic | 20.0% |
| !!! | TATTTCTATCAAGTATTAAC+AGG | - | chr1_2:3888764-3888783 | Msa0050200:intron | 20.0% |
| !! | TTATTTACTGTATGAAAGAA+AGG | + | chr1_2:3889253-3889272 | None:intergenic | 20.0% |
| !! | TTCTTTCATACAGTAAATAA+AGG | - | chr1_2:3889253-3889272 | Msa0050200:intron | 20.0% |
| !! | AAATTTCCCAAATTATTTAC+TGG | - | chr1_2:3889282-3889301 | Msa0050200:intron | 20.0% |
| !! | ACAAAACCAGTAAATAATTT+GGG | + | chr1_2:3889291-3889310 | None:intergenic | 20.0% |
| !!! | CAATTTCTCAAATTATTTTC+TGG | - | chr1_2:3889311-3889330 | Msa0050200:CDS | 20.0% |
| !!! | ATCCTATATCTTTTATTCTT+CGG | - | chr1_2:3889722-3889741 | Msa0050200:intron | 20.0% |
| !! | TTCATGTAAATTAATATGCA+AGG | - | chr1_2:3889760-3889779 | Msa0050200:intron | 20.0% |
| !! | TCATGTAAATTAATATGCAA+GGG | - | chr1_2:3889761-3889780 | Msa0050200:intron | 20.0% |
| !! | GTTATATTATATTCAACTAG+CGG | - | chr1_2:3890529-3890548 | Msa0050200:intron | 20.0% |
| !!! | AGTATTTAAACTTGTTGATT+GGG | - | chr1_2:3890656-3890675 | Msa0050200:intron | 20.0% |
| !!! | GATATCTTAAGTTTTTATGA+AGG | + | chr1_2:3891078-3891097 | None:intergenic | 20.0% |
| !! | ATAAAAACTTAAGATATCGT+TGG | - | chr1_2:3891080-3891099 | Msa0050200:intron | 20.0% |
| !! | AATATCACTAAATATACCTT+TGG | + | chr1_2:3891143-3891162 | None:intergenic | 20.0% |
| !!! | ATACTGTTTTTCTAGTTATA+TGG | - | chr1_2:3891635-3891654 | Msa0050200:intron | 20.0% |
| !! | TTATAAGATCTATTAGGAAT+GGG | + | chr1_2:3892056-3892075 | None:intergenic | 20.0% |
| !!! | AGATATTGTGTGATTTTTTT+TGG | - | chr1_2:3892116-3892135 | Msa0050200:intron | 20.0% |
| !!! | TAATTATTTTACATTACTCG+TGG | + | chr1_2:3892286-3892305 | None:intergenic | 20.0% |
| !!! | TTTTTATAATGACAACTTTC+TGG | - | chr1_2:3892312-3892331 | Msa0050200:intron | 20.0% |
| !! | AATAAAATCGTGTCATATTA+AGG | + | chr1_2:3892403-3892422 | None:intergenic | 20.0% |
| !! | TCAATCAGGTTTATAATATA+TGG | + | chr1_2:3892923-3892942 | None:intergenic | 20.0% |
| !! | ACATACATAATACATTGTTA+AGG | + | chr1_2:3893064-3893083 | None:intergenic | 20.0% |
| !!! | TTACTTTTGAAATGAGAATC+AGG | + | chr1_2:3886918-3886937 | None:intergenic | 25.0% |
| ! | GAATGAAAATTCAGTAGATT+GGG | + | chr1_2:3887195-3887214 | None:intergenic | 25.0% |
| !!! | GTTTTTGATTGATTTTGCTT+TGG | - | chr1_2:3887376-3887395 | Msa0050200:intron | 25.0% |
| !!! | TTTCTCTTTGATTTCTTTTC+TGG | - | chr1_2:3887580-3887599 | Msa0050200:intron | 25.0% |
| ! | ATAAAAAACGGACATACAAT+TGG | + | chr1_2:3887706-3887725 | None:intergenic | 25.0% |
| ! | ATTCCGAATGAGATAAAAAA+CGG | + | chr1_2:3887718-3887737 | None:intergenic | 25.0% |
| ! | GAATTTACTATATCTTCACT+AGG | - | chr1_2:3888266-3888285 | Msa0050200:intron | 25.0% |
| ! | CACTTATGAATATCTTATCA+AGG | + | chr1_2:3888446-3888465 | None:intergenic | 25.0% |
| ! | GATATTCATAAGTGATGTAT+AGG | - | chr1_2:3888452-3888471 | Msa0050200:intron | 25.0% |
| ! | GTTATTATCAACCAATACAA+AGG | + | chr1_2:3888488-3888507 | None:intergenic | 25.0% |
| !!! | GATACTTCAAATTTGCTAAA+GGG | + | chr1_2:3888545-3888564 | None:intergenic | 25.0% |
| !!! | AGATACTTCAAATTTGCTAA+AGG | + | chr1_2:3888546-3888565 | None:intergenic | 25.0% |
| !! | TTTAGCAAATTTGAAGTATC+TGG | - | chr1_2:3888545-3888564 | Msa0050200:intron | 25.0% |
| !! | TTAGCAAATTTGAAGTATCT+GGG | - | chr1_2:3888546-3888565 | Msa0050200:intron | 25.0% |
| ! | GAAATTCGTCATTTCAAATA+AGG | - | chr1_2:3888584-3888603 | Msa0050200:intron | 25.0% |
| ! | AATTACTTTCTGACATATGT+TGG | - | chr1_2:3888616-3888635 | Msa0050200:intron | 25.0% |
| ! | TCATTTATTTCACATTCAGT+TGG | - | chr1_2:3888844-3888863 | Msa0050200:CDS | 25.0% |
| ! | TAATTCTTAAGATGCAATGT+TGG | + | chr1_2:3889051-3889070 | None:intergenic | 25.0% |
| ! | GACAAAACCAGTAAATAATT+TGG | + | chr1_2:3889292-3889311 | None:intergenic | 25.0% |
| !!! | TAATTGTTTTTCTTCTGGAA+CGG | - | chr1_2:3889361-3889380 | Msa0050200:CDS | 25.0% |
| ! | TGAAGATAATATTAGGATCA+TGG | + | chr1_2:3889422-3889441 | None:intergenic | 25.0% |
| ! | CATTAGTGAATCAAAATAGT+AGG | - | chr1_2:3889497-3889516 | Msa0050200:intron | 25.0% |
| ! | AAGAGCAAGACTTAAAATAA+AGG | + | chr1_2:3889653-3889672 | None:intergenic | 25.0% |
| ! | AACCGAAGAATAAAAGATAT+AGG | + | chr1_2:3889727-3889746 | None:intergenic | 25.0% |
| !! | ATATAGGATATGGTTCTTTT+TGG | + | chr1_2:3889788-3889807 | None:intergenic | 25.0% |
| !! | ATATAGGATATGGTTCTTTT+TGG | + | chr1_2:3889788-3889807 | None:intergenic | 25.0% |
| !! | ATATAGGATATGGTTCTTTT+TGG | + | chr1_2:3889788-3889807 | None:intergenic | 25.0% |
| !! | ATATAGGATATGGTTCTTTT+TGG | + | chr1_2:3889788-3889807 | None:intergenic | 25.0% |
| ! | AAAAAAACAACGTATAGTGA+GGG | + | chr1_2:3890355-3890374 | None:intergenic | 25.0% |
| !!! | TTTACATCAAAAGCATTAGA+TGG | - | chr1_2:3890507-3890526 | Msa0050200:intron | 25.0% |
| ! | AAGATTTCATGTTCATTTGA+TGG | + | chr1_2:3890582-3890601 | None:intergenic | 25.0% |
| !!! | GAGTATTTAAACTTGTTGAT+TGG | - | chr1_2:3890655-3890674 | Msa0050200:intron | 25.0% |
| !!! | TCATTGGATTTTTAGAAGAA+CGG | - | chr1_2:3890745-3890764 | Msa0050200:intron | 25.0% |
| ! | AACATGACATAATCATTTGA+AGG | + | chr1_2:3890910-3890929 | None:intergenic | 25.0% |
| ! | GAAACATGTAATAGATATGA+AGG | + | chr1_2:3891001-3891020 | None:intergenic | 25.0% |
| ! | AAGTTCATTATTACGTCTAA+TGG | + | chr1_2:3891120-3891139 | None:intergenic | 25.0% |
| ! | TTTAGTGATGTACATCTATT+TGG | - | chr1_2:3891201-3891220 | Msa0050200:CDS | 25.0% |
| !! | ATGTGGATATTTTTCATTGA+GGG | + | chr1_2:3891244-3891263 | None:intergenic | 25.0% |
| ! | TATATGAAAGAGGAAAACAA+TGG | + | chr1_2:3891516-3891535 | None:intergenic | 25.0% |
| ! | TTCATATAATCGTTGACAAT+TGG | - | chr1_2:3891528-3891547 | Msa0050200:intron | 25.0% |
| ! | TGGTTCTTTCTACATTATTA+TGG | - | chr1_2:3891548-3891567 | Msa0050200:intron | 25.0% |
| ! | TTATCATAACTTTACCCATT+TGG | - | chr1_2:3891763-3891782 | Msa0050200:intron | 25.0% |
| ! | TATCATAACTTTACCCATTT+GGG | - | chr1_2:3891764-3891783 | Msa0050200:intron | 25.0% |
| ! | CTTATAAGATCTATTAGGAA+TGG | + | chr1_2:3892057-3892076 | None:intergenic | 25.0% |
| !! | GTTCTAATAAACCATTTTGA+TGG | + | chr1_2:3892348-3892367 | None:intergenic | 25.0% |
| !! | TTGTTATTGTCATTGAATGT+TGG | - | chr1_2:3892451-3892470 | Msa0050200:intron | 25.0% |
| ! | CATATTTGACACATTAGAAA+GGG | + | chr1_2:3892670-3892689 | None:intergenic | 25.0% |
| ! | AAAATTGAACGTTATCAATC+AGG | + | chr1_2:3892937-3892956 | None:intergenic | 25.0% |
| !! | TCAGCACATTTTATTATTGA+TGG | - | chr1_2:3893138-3893157 | Msa0050200:five_prime_UTR | 25.0% |
| ! | GCAACAATATTATCATAATG+TGG | - | chr1_2:3893192-3893211 | Msa0050200:five_prime_UTR | 25.0% |
| !! | AGGAATGTGAAAGTTACTTT+TGG | + | chr1_2:3886898-3886917 | None:intergenic | 30.0% |
| AAGACTGTTGTAAGAGTAAA+GGG | + | chr1_2:3886970-3886989 | None:intergenic | 30.0% | |
| AAAGACTGTTGTAAGAGTAA+AGG | + | chr1_2:3886971-3886990 | None:intergenic | 30.0% | |
| ATTTGAATGATGAAACGATG+GGG | + | chr1_2:3887032-3887051 | None:intergenic | 30.0% | |
| GATTTGAATGATGAAACGAT+GGG | + | chr1_2:3887033-3887052 | None:intergenic | 30.0% | |
| TGATTTGAATGATGAAACGA+TGG | + | chr1_2:3887034-3887053 | None:intergenic | 30.0% | |
| GGAATGAAAATTCAGTAGAT+TGG | + | chr1_2:3887196-3887215 | None:intergenic | 30.0% | |
| !!! | TGTCCGTTTTTTATCTCATT+CGG | - | chr1_2:3887712-3887731 | Msa0050200:intron | 30.0% |
| GCACTTTGCATATCATTATT+CGG | - | chr1_2:3887767-3887786 | Msa0050200:intron | 30.0% | |
| TTGCATATCATTATTCGGTA+TGG | - | chr1_2:3887772-3887791 | Msa0050200:intron | 30.0% | |
| ! | TCAGTAATCTAGTTCATACT+TGG | - | chr1_2:3887810-3887829 | Msa0050200:intron | 30.0% |
| AATACAAGGTTCTATTGCAA+AGG | + | chr1_2:3887947-3887966 | None:intergenic | 30.0% | |
| ! | CTTTCTAGCACATAAATACA+AGG | + | chr1_2:3887961-3887980 | None:intergenic | 30.0% |
| GTACAAACAACAATTTCTTG+TGG | - | chr1_2:3887982-3888001 | Msa0050200:intron | 30.0% | |
| ACAATTTCTTGTGGTTTAAG+TGG | - | chr1_2:3887991-3888010 | Msa0050200:intron | 30.0% | |
| TCATCATCATCTATAGAACA+CGG | + | chr1_2:3888347-3888366 | None:intergenic | 30.0% | |
| TAACAGGAAATTGAACTCTT+AGG | - | chr1_2:3888780-3888799 | Msa0050200:intron | 30.0% | |
| AATGAGACTTTACGCATATT+TGG | + | chr1_2:3888829-3888848 | None:intergenic | 30.0% | |
| TTTATTTCACATTCAGTTGG+AGG | - | chr1_2:3888847-3888866 | Msa0050200:CDS | 30.0% | |
| TTCAGGCAATAAAGAAAGTA+AGG | - | chr1_2:3888933-3888952 | Msa0050200:intron | 30.0% | |
| CACTAGACTAATGAAACATA+AGG | + | chr1_2:3889074-3889093 | None:intergenic | 30.0% | |
| ! | ATGTTTCATTAGTCTAGTGA+TGG | - | chr1_2:3889075-3889094 | Msa0050200:intron | 30.0% |
| ! | TGTTTCATTAGTCTAGTGAT+GGG | - | chr1_2:3889076-3889095 | Msa0050200:intron | 30.0% |
| ! | TTCTCTCTAAAAAGCTATAC+AGG | - | chr1_2:3889209-3889228 | Msa0050200:intron | 30.0% |
| TAGTGAATCAAAATAGTAGG+AGG | - | chr1_2:3889500-3889519 | Msa0050200:intron | 30.0% | |
| ATAGATAAATGTGGCTAATG+CGG | - | chr1_2:3889565-3889584 | Msa0050200:intron | 30.0% | |
| TACCCAAAGTCAATCATAAA+GGG | - | chr1_2:3889686-3889705 | Msa0050200:intron | 30.0% | |
| ! | AACCCTTTATGATTGACTTT+GGG | + | chr1_2:3889691-3889710 | None:intergenic | 30.0% |
| ATTCTTCGGTTTCATTTCTT+CGG | - | chr1_2:3889736-3889755 | Msa0050200:intron | 30.0% | |
| ! | ATCAGTTTTTCTCATTTGTC+CGG | - | chr1_2:3890269-3890288 | Msa0050200:intron | 30.0% |
| GAAAAAAACAACGTATAGTG+AGG | + | chr1_2:3890356-3890375 | None:intergenic | 30.0% | |
| GACTCTTATAATCTCTTTCT+TGG | - | chr1_2:3890379-3890398 | Msa0050200:intron | 30.0% | |
| !!! | TTGATTGGGTTTTGAATTTC+AGG | - | chr1_2:3890670-3890689 | Msa0050200:intron | 30.0% |
| !!! | TTTCAGGTTCCATTTCTTTT+TGG | - | chr1_2:3890686-3890705 | Msa0050200:intron | 30.0% |
| !! | TTCAGGTTCCATTTCTTTTT+GGG | - | chr1_2:3890687-3890706 | Msa0050200:intron | 30.0% |
| ! | TTGCAAGTGTTGTTATTCAT+TGG | - | chr1_2:3890729-3890748 | Msa0050200:intron | 30.0% |
| !! | CATTGGATTTTTAGAAGAAC+GGG | - | chr1_2:3890746-3890765 | Msa0050200:intron | 30.0% |
| TCGGGTTATATATTCAAATG+TGG | - | chr1_2:3890962-3890981 | Msa0050200:intron | 30.0% | |
| CGGGTTATATATTCAAATGT+GGG | - | chr1_2:3890963-3890982 | Msa0050200:intron | 30.0% | |
| ACGTAATAATGAACTTCCAA+AGG | - | chr1_2:3891124-3891143 | Msa0050200:CDS | 30.0% | |
| ! | CATGTGGATATTTTTCATTG+AGG | + | chr1_2:3891245-3891264 | None:intergenic | 30.0% |
| TGTGACTTACTGAAAGATAA+TGG | - | chr1_2:3891306-3891325 | Msa0050200:CDS | 30.0% | |
| TGTCAACGATTATATGAAAG+AGG | + | chr1_2:3891526-3891545 | None:intergenic | 30.0% | |
| AAAAACAGTATTGCAAAGGA+AGG | + | chr1_2:3891626-3891645 | None:intergenic | 30.0% | |
| CTAGAAAAACAGTATTGCAA+AGG | + | chr1_2:3891630-3891649 | None:intergenic | 30.0% | |
| ! | TAGAATCTTGCTTTAGGTTA+CGG | + | chr1_2:3891723-3891742 | None:intergenic | 30.0% |
| TAACACTTATCATGTAACGA+TGG | + | chr1_2:3891746-3891765 | None:intergenic | 30.0% | |
| ATCATAACTTTACCCATTTG+GGG | - | chr1_2:3891765-3891784 | Msa0050200:intron | 30.0% | |
| TCTTTACCGAACATATGATT+CGG | - | chr1_2:3892028-3892047 | Msa0050200:intron | 30.0% | |
| ACGCTCTTATAAGATCTATT+AGG | + | chr1_2:3892062-3892081 | None:intergenic | 30.0% | |
| ! | AATAGATCTTATAAGAGCGT+AGG | - | chr1_2:3892062-3892081 | Msa0050200:intron | 30.0% |
| ! | GTGTTCTGAATAAACTCTTT+AGG | - | chr1_2:3892084-3892103 | Msa0050200:intron | 30.0% |
| !! | ATAATGACAACTTTCTGGTT+AGG | - | chr1_2:3892317-3892336 | Msa0050200:intron | 30.0% |
| ATCGATCAATGAACACTAAT+GGG | + | chr1_2:3892370-3892389 | None:intergenic | 30.0% | |
| AATCGATCAATGAACACTAA+TGG | + | chr1_2:3892371-3892390 | None:intergenic | 30.0% | |
| CGAAATGTAAGATTTCTAAC+TGG | - | chr1_2:3892514-3892533 | Msa0050200:intron | 30.0% | |
| CCATATTTGACACATTAGAA+AGG | + | chr1_2:3892671-3892690 | None:intergenic | 30.0% | |
| CCTTTCTAATGTGTCAAATA+TGG | - | chr1_2:3892668-3892687 | Msa0050200:intron | 30.0% | |
| AAAAGATCGAGAAAGAATAG+AGG | + | chr1_2:3892737-3892756 | None:intergenic | 30.0% | |
| !!! | GATCTTTTCTTGCTATTTAC+AGG | - | chr1_2:3892749-3892768 | Msa0050200:intron | 30.0% |
| ACATCATCTATGTCAGAAAA+TGG | + | chr1_2:3892830-3892849 | None:intergenic | 30.0% | |
| TAGCAATATAAGCTTTGCAA+AGG | - | chr1_2:3892878-3892897 | Msa0050200:CDS | 30.0% | |
| TTGCAAAGGTAAATCTGAAA+TGG | - | chr1_2:3892892-3892911 | Msa0050200:CDS | 30.0% | |
| !! | TGAAATTGTGAATTTGTTGC+AGG | - | chr1_2:3892960-3892979 | Msa0050200:five_prime_UTR | 30.0% |
| ! | AATTTTGTTACTCAGGAAAC+CGG | + | chr1_2:3892996-3893015 | None:intergenic | 30.0% |
| ! | AATGGAGAATTTTGTTACTC+AGG | + | chr1_2:3893003-3893022 | None:intergenic | 30.0% |
| ACAAAATTCTCCATTAGTTG+AGG | - | chr1_2:3893008-3893027 | Msa0050200:five_prime_UTR | 30.0% | |
| ATGTGTATGATATGTAGATC+AGG | - | chr1_2:3893084-3893103 | Msa0050200:five_prime_UTR | 30.0% | |
| ACTCAATTACTTTCATGGAA+GGG | + | chr1_2:3893119-3893138 | None:intergenic | 30.0% | |
| AGACTGTTGTAAGAGTAAAG+GGG | + | chr1_2:3886969-3886988 | None:intergenic | 35.0% | |
| GAAAATGCGAAGAGTTTGAA+TGG | + | chr1_2:3887081-3887100 | None:intergenic | 35.0% | |
| ! | AGGAATTGGAGTTTTCTTTC+CGG | + | chr1_2:3887134-3887153 | None:intergenic | 35.0% |
| AGTAGATTGGGAAATGAAGT+CGG | + | chr1_2:3887183-3887202 | None:intergenic | 35.0% | |
| !!! | TTCTCGGAAGGTATTGATTT+TGG | - | chr1_2:3887342-3887361 | Msa0050200:CDS | 35.0% |
| TGTTTGTTCTTGCAGTTCAA+AGG | - | chr1_2:3887485-3887504 | Msa0050200:intron | 35.0% | |
| AAAGGATTGGAAATTTGCGT+CGG | - | chr1_2:3887503-3887522 | Msa0050200:CDS | 35.0% | |
| TGTTAAAGAGCTTCCAGATA+AGG | - | chr1_2:3887533-3887552 | Msa0050200:CDS | 35.0% | |
| CAGTGAACAAAAACCTTATC+TGG | + | chr1_2:3887549-3887568 | None:intergenic | 35.0% | |
| ! | CTTGGTGCAATTGTAGTTTA+AGG | - | chr1_2:3887828-3887847 | Msa0050200:intron | 35.0% |
| TTTGTTTACTCGGAATTCGA+CGG | - | chr1_2:3887921-3887940 | Msa0050200:intron | 35.0% | |
| TTTGGACATCCTTCTTTCTT+GGG | - | chr1_2:3888031-3888050 | Msa0050200:intron | 35.0% | |
| TGAGTTATATTGTCCAGTGT+GGG | - | chr1_2:3888089-3888108 | Msa0050200:intron | 35.0% | |
| TTTCTCATCTTCTTTCACTC+AGG | - | chr1_2:3888140-3888159 | Msa0050200:intron | 35.0% | |
| GTTATGCTTTACTAGTCACA+GGG | + | chr1_2:3888399-3888418 | None:intergenic | 35.0% | |
| !! | CTACAAAGAAAAGTGTCAAC+AGG | + | chr1_2:3888421-3888440 | None:intergenic | 35.0% |
| GAAAACAGAGTCCTTTGTAT+TGG | - | chr1_2:3888474-3888493 | Msa0050200:intron | 35.0% | |
| !! | TTCAAATTTGCTAAAGGGTG+TGG | + | chr1_2:3888540-3888559 | None:intergenic | 35.0% |
| TTTCTGACATATGTTGGAGA+TGG | - | chr1_2:3888622-3888641 | Msa0050200:intron | 35.0% | |
| ATTGAACTCTTAGGTCATTG+AGG | - | chr1_2:3888789-3888808 | Msa0050200:intron | 35.0% | |
| TTATTGCCTGAATCCTGAAT+AGG | + | chr1_2:3888925-3888944 | None:intergenic | 35.0% | |
| AGGCAATAAAGAAAGTAAGG+TGG | - | chr1_2:3888936-3888955 | Msa0050200:intron | 35.0% | |
| GACTCAATAGGTACAATATG+TGG | - | chr1_2:3888958-3888977 | Msa0050200:intron | 35.0% | |
| ! | GTTTCATTAGTCTAGTGATG+GGG | - | chr1_2:3889077-3889096 | Msa0050200:intron | 35.0% |
| ATGGGGATTAAAGAGACTAT+TGG | - | chr1_2:3889094-3889113 | Msa0050200:intron | 35.0% | |
| ! | AAAGGACTTGACTAGTTCAA+AGG | + | chr1_2:3889235-3889254 | None:intergenic | 35.0% |
| TAATGACACTAGATATGCAC+TGG | + | chr1_2:3889482-3889501 | None:intergenic | 35.0% | |
| CAGTATTACGTTGCAATCTT+TGG | - | chr1_2:3889528-3889547 | Msa0050200:intron | 35.0% | |
| AGCCTTAAAACCTAATGTTG+TGG | - | chr1_2:3889608-3889627 | Msa0050200:intron | 35.0% | |
| GTACCCAAAGTCAATCATAA+AGG | - | chr1_2:3889685-3889704 | Msa0050200:intron | 35.0% | |
| ! | CAACCCTTTATGATTGACTT+TGG | + | chr1_2:3889692-3889711 | None:intergenic | 35.0% |
| CAAAGTCAATCATAAAGGGT+TGG | - | chr1_2:3889690-3889709 | Msa0050200:intron | 35.0% | |
| TTAGAGCGAATGACAGTTTA+TGG | - | chr1_2:3890414-3890433 | Msa0050200:intron | 35.0% | |
| TAGAGCGAATGACAGTTTAT+GGG | - | chr1_2:3890415-3890434 | Msa0050200:intron | 35.0% | |
| !! | ATGGGTTTGGTTTGATAGAT+TGG | - | chr1_2:3890433-3890452 | Msa0050200:intron | 35.0% |
| ! | TCAGGTTCCATTTCTTTTTG+GGG | - | chr1_2:3890688-3890707 | Msa0050200:intron | 35.0% |
| ! | GATTATGTCATGTTTTGTGC+AGG | - | chr1_2:3890916-3890935 | Msa0050200:intron | 35.0% |
| AAACTTAAGATATCGTTGGC+TGG | - | chr1_2:3891084-3891103 | Msa0050200:intron | 35.0% | |
| GTGATGTACATCTATTTGGT+TGG | - | chr1_2:3891205-3891224 | Msa0050200:CDS | 35.0% | |
| !! | TACATCTATTTGGTTGGTAG+TGG | - | chr1_2:3891211-3891230 | Msa0050200:CDS | 35.0% |
| !! | ACATCTATTTGGTTGGTAGT+GGG | - | chr1_2:3891212-3891231 | Msa0050200:CDS | 35.0% |
| TGCTCTTCATATACAACATG+TGG | + | chr1_2:3891261-3891280 | None:intergenic | 35.0% | |
| !! | TGTATATGAAGAGCATTGCA+AGG | - | chr1_2:3891266-3891285 | Msa0050200:CDS | 35.0% |
| TGAAAGAGGAAAACAATGGA+AGG | + | chr1_2:3891512-3891531 | None:intergenic | 35.0% | |
| GTTAGGAGATACCATCAAAA+TGG | - | chr1_2:3892334-3892353 | Msa0050200:intron | 35.0% | |
| ! | GTGTTCATTGATCGATTCAT+AGG | - | chr1_2:3892374-3892393 | Msa0050200:intron | 35.0% |
| ! | TTCATTGATCGATTCATAGG+TGG | - | chr1_2:3892377-3892396 | Msa0050200:intron | 35.0% |
| TTGGACAATATAGTCATGCA+TGG | - | chr1_2:3892470-3892489 | Msa0050200:intron | 35.0% | |
| CAAAGACCAAATCTCACATA+TGG | - | chr1_2:3892773-3892792 | Msa0050200:intron | 35.0% | |
| !! | ATTGTGAATTTGTTGCAGGA+TGG | - | chr1_2:3892964-3892983 | Msa0050200:five_prime_UTR | 35.0% |
| CAATTCTTCACCTCAACTAA+TGG | + | chr1_2:3893021-3893040 | None:intergenic | 35.0% | |
| CTCAATTACTTTCATGGAAG+GGG | + | chr1_2:3893118-3893137 | None:intergenic | 35.0% | |
| GACTCAATTACTTTCATGGA+AGG | + | chr1_2:3893120-3893139 | None:intergenic | 35.0% | |
| !! | TGCTGACTCAATTACTTTCA+TGG | + | chr1_2:3893124-3893143 | None:intergenic | 35.0% |
| AACAGTCTTTCTTCCTTCTC+AGG | - | chr1_2:3886981-3887000 | Msa0050200:three_prime_UTR | 40.0% | |
| ! | GTAGTTGTTGTTACCTGAGA+AGG | + | chr1_2:3886997-3887016 | None:intergenic | 40.0% |
| AAACGATGGGGTAGTTATGT+GGG | + | chr1_2:3887020-3887039 | None:intergenic | 40.0% | |
| ! | CGCATTTTCTCACACTTTCT+CGG | - | chr1_2:3887092-3887111 | Msa0050200:three_prime_UTR | 40.0% |
| ! | GCATTTTCTCACACTTTCTC+GGG | - | chr1_2:3887093-3887112 | Msa0050200:three_prime_UTR | 40.0% |
| CGGGAAAAAATTTCTCTTCC+CGG | - | chr1_2:3887112-3887131 | Msa0050200:three_prime_UTR | 40.0% | |
| ! | GGAATTGGAGTTTTCTTTCC+GGG | + | chr1_2:3887133-3887152 | None:intergenic | 40.0% |
| ATCGGGAAGGAAAAAGGAAT+TGG | + | chr1_2:3887148-3887167 | None:intergenic | 40.0% | |
| TTCATTCCTCGTTGATCCTA+TGG | - | chr1_2:3887208-3887227 | Msa0050200:intron | 40.0% | |
| ! | ATTTGGAACTCCAAACATCG+CGG | + | chr1_2:3887274-3887293 | None:intergenic | 40.0% |
| GGAAGAAGAATCAGAGGATT+TGG | + | chr1_2:3887291-3887310 | None:intergenic | 40.0% | |
| CATTGACCATGACAACAAGA+TGG | + | chr1_2:3887319-3887338 | None:intergenic | 40.0% | |
| ! | CATCTTGTTGTCATGGTCAA+TGG | - | chr1_2:3887317-3887336 | Msa0050200:CDS | 40.0% |
| GTCATGGTCAATGGAATTCT+CGG | - | chr1_2:3887326-3887345 | Msa0050200:CDS | 40.0% | |
| GTTCTTGCAGTTCAAAGGAT+TGG | - | chr1_2:3887490-3887509 | Msa0050200:intron | 40.0% | |
| ! | TGCAAAGTGCTAAGACACTA+AGG | + | chr1_2:3887757-3887776 | None:intergenic | 40.0% |
| ATGTCCAAAGCTTGTCAACT+CGG | + | chr1_2:3888020-3888039 | None:intergenic | 40.0% | |
| CTTTGGACATCCTTCTTTCT+TGG | - | chr1_2:3888030-3888049 | Msa0050200:intron | 40.0% | |
| TTGGACATCCTTCTTTCTTG+GGG | - | chr1_2:3888032-3888051 | Msa0050200:intron | 40.0% | |
| CTGAGTTATATTGTCCAGTG+TGG | - | chr1_2:3888088-3888107 | Msa0050200:intron | 40.0% | |
| ! | ACAGAATTTAAAGCCCACAC+TGG | + | chr1_2:3888105-3888124 | None:intergenic | 40.0% |
| GTGTCTAAGCATACACTAGA+TGG | - | chr1_2:3888176-3888195 | Msa0050200:intron | 40.0% | |
| TAAGCATACACTAGATGGTG+TGG | - | chr1_2:3888181-3888200 | Msa0050200:intron | 40.0% | |
| GGTTATGCTTTACTAGTCAC+AGG | + | chr1_2:3888400-3888419 | None:intergenic | 40.0% | |
| ! | TTGAAGTATCTGGGCTTCAT+TGG | - | chr1_2:3888555-3888574 | Msa0050200:intron | 40.0% |
| ACATTCAGTTGGAGGATTAG+TGG | - | chr1_2:3888855-3888874 | Msa0050200:CDS | 40.0% | |
| TTAGTGGCACGATATGCTAT+TGG | - | chr1_2:3888871-3888890 | Msa0050200:CDS | 40.0% | |
| TAGTGGCACGATATGCTATT+GGG | - | chr1_2:3888872-3888891 | Msa0050200:CDS | 40.0% | |
| ATGCTATTGGGAAGCTGTAT+AGG | - | chr1_2:3888884-3888903 | Msa0050200:CDS | 40.0% | |
| AACGAACCTATTCAGGATTC+AGG | - | chr1_2:3888916-3888935 | Msa0050200:intron | 40.0% | |
| ! | GAAAGTAAGGTGGACTCAAT+AGG | - | chr1_2:3888946-3888965 | Msa0050200:intron | 40.0% |
| AATAGGTACAATATGTGGCC+TGG | - | chr1_2:3888963-3888982 | Msa0050200:intron | 40.0% | |
| TTACGAAATTCATTGCCTCC+AGG | + | chr1_2:3888984-3889003 | None:intergenic | 40.0% | |
| AGAGAGAGAGAGATGAAAGA+GGG | + | chr1_2:3889185-3889204 | None:intergenic | 40.0% | |
| TGGAACGGTTTCTCGTTATT+AGG | - | chr1_2:3889376-3889395 | Msa0050200:CDS | 40.0% | |
| ! | GGCCACAACATTAGGTTTTA+AGG | + | chr1_2:3889613-3889632 | None:intergenic | 40.0% |
| ACAACGTATAGTGAGGGTTT+GGG | + | chr1_2:3890349-3890368 | None:intergenic | 40.0% | |
| AACAACGTATAGTGAGGGTT+TGG | + | chr1_2:3890350-3890369 | None:intergenic | 40.0% | |
| CGAATGACAGTTTATGGGTT+TGG | - | chr1_2:3890420-3890439 | Msa0050200:intron | 40.0% | |
| GCAGTTACCCCAAAAAGAAA+TGG | + | chr1_2:3890698-3890717 | None:intergenic | 40.0% | |
| ! | AGGTTTTCCTTCATCGTCAT+CGG | + | chr1_2:3890789-3890808 | None:intergenic | 40.0% |
| TCAATCATGCGTTTGAGCAA+TGG | + | chr1_2:3890812-3890831 | None:intergenic | 40.0% | |
| CGCATGATTGAAGACTATGA+TGG | - | chr1_2:3890821-3890840 | Msa0050200:intron | 40.0% | |
| !! | AATGGCTCTGACAAGATAGA+AGG | - | chr1_2:3891324-3891343 | Msa0050200:intron | 40.0% |
| TCTTTCACACTGCTCTTACA+TGG | - | chr1_2:3891482-3891501 | Msa0050200:intron | 40.0% | |
| CGATGGTAGAATCTTGCTTT+AGG | + | chr1_2:3891729-3891748 | None:intergenic | 40.0% | |
| ! | TAACTTTACCCATTTGGGGT+TGG | - | chr1_2:3891769-3891788 | Msa0050200:intron | 40.0% |
| !! | AGCTTGCTCTGGCTTTAAAT+GGG | - | chr1_2:3891886-3891905 | Msa0050200:intron | 40.0% |
| AAAACTCAGTATCCGATCCA+AGG | + | chr1_2:3891958-3891977 | None:intergenic | 40.0% | |
| TGGGTTCCGAATCATATGTT+CGG | + | chr1_2:3892037-3892056 | None:intergenic | 40.0% | |
| ACTGGAATGAAAACTTGCAG+AGG | - | chr1_2:3892532-3892551 | Msa0050200:intron | 40.0% | |
| AGGTTTGTCTTCTGTGTCAT+GGG | - | chr1_2:3892565-3892584 | Msa0050200:intron | 40.0% | |
| CAAATCTCTGTCTGCTACTA+TGG | + | chr1_2:3892610-3892629 | None:intergenic | 40.0% | |
| TGCTGCTCATAGTGTAATTC+AGG | - | chr1_2:3892628-3892647 | Msa0050200:intron | 40.0% | |
| TTGACACATTAGAAAGGGCA+GGG | + | chr1_2:3892665-3892684 | None:intergenic | 40.0% | |
| TTTGACACATTAGAAAGGGC+AGG | + | chr1_2:3892666-3892685 | None:intergenic | 40.0% | |
| GACCAAATCTCACATATGGA+AGG | - | chr1_2:3892777-3892796 | Msa0050200:intron | 40.0% | |
| CACCTTCCATATGTGAGATT+TGG | + | chr1_2:3892782-3892801 | None:intergenic | 40.0% | |
| CTGTTGTAAGAGTAAAGGGG+CGG | + | chr1_2:3886966-3886985 | None:intergenic | 45.0% | |
| AACGATGGGGTAGTTATGTG+GGG | + | chr1_2:3887019-3887038 | None:intergenic | 45.0% | |
| GAAACGATGGGGTAGTTATG+TGG | + | chr1_2:3887021-3887040 | None:intergenic | 45.0% | |
| GAAGAGATCGGGAAGGAAAA+AGG | + | chr1_2:3887154-3887173 | None:intergenic | 45.0% | |
| ! | AGTCGGTGTTTGGAAGAGAT+CGG | + | chr1_2:3887166-3887185 | None:intergenic | 45.0% |
| ! | TGGGAAATGAAGTCGGTGTT+TGG | + | chr1_2:3887176-3887195 | None:intergenic | 45.0% |
| TCTTCTCCATAGGATCAACG+AGG | + | chr1_2:3887217-3887236 | None:intergenic | 45.0% | |
| CACACATCGTTCTTCTCCAT+AGG | + | chr1_2:3887227-3887246 | None:intergenic | 45.0% | |
| GAAGAACGATGTGTGCACAT+CGG | - | chr1_2:3887232-3887251 | Msa0050200:intron | 45.0% | |
| GACCATGACAACAAGATGGT+CGG | + | chr1_2:3887315-3887334 | None:intergenic | 45.0% | |
| TGGTCAATGGAATTCTCGGA+AGG | - | chr1_2:3887330-3887349 | Msa0050200:CDS | 45.0% | |
| ACTAGATGGTGTGGACGTAA+TGG | - | chr1_2:3888190-3888209 | Msa0050200:intron | 45.0% | |
| CTAGATGGTGTGGACGTAAT+GGG | - | chr1_2:3888191-3888210 | Msa0050200:intron | 45.0% | |
| TGAATAGGTTCGTTTCCAGG+TGG | + | chr1_2:3888910-3888929 | None:intergenic | 45.0% | |
| ACCTGGAAACGAACCTATTC+AGG | - | chr1_2:3888909-3888928 | Msa0050200:intron | 45.0% | |
| TCCTGAATAGGTTCGTTTCC+AGG | + | chr1_2:3888913-3888932 | None:intergenic | 45.0% | |
| AACTGTTGCTACACCTCATC+TGG | - | chr1_2:3889002-3889021 | Msa0050200:CDS | 45.0% | |
| ACTGTTGCTACACCTCATCT+GGG | - | chr1_2:3889003-3889022 | Msa0050200:CDS | 45.0% | |
| CATTACACACCAGACTACAG+AGG | + | chr1_2:3889150-3889169 | None:intergenic | 45.0% | |
| GAGAGAGAGAGAGATGAAAG+AGG | + | chr1_2:3889186-3889205 | None:intergenic | 45.0% | |
| ATTTGTCCGGATTTGAACCC+AGG | - | chr1_2:3890282-3890301 | Msa0050200:intron | 45.0% | |
| ! | GATAAGGAGTTTGAGGTCCT+GGG | + | chr1_2:3890302-3890321 | None:intergenic | 45.0% |
| GCTAAGGGATAAGGAGTTTG+AGG | + | chr1_2:3890309-3890328 | None:intergenic | 45.0% | |
| ! | GTTCAACTGGTCTGAGCTAA+GGG | + | chr1_2:3890324-3890343 | None:intergenic | 45.0% |
| ! | AGTTCAACTGGTCTGAGCTA+AGG | + | chr1_2:3890325-3890344 | None:intergenic | 45.0% |
| !! | GGATTTTTAGAAGAACGGGC+CGG | - | chr1_2:3890750-3890769 | Msa0050200:intron | 45.0% |
| CATCGGTAAGGAAAAGATGC+CGG | + | chr1_2:3890772-3890791 | None:intergenic | 45.0% | |
| TTCCTTACCGATGACGATGA+AGG | - | chr1_2:3890779-3890798 | Msa0050200:intron | 45.0% | |
| TTCCTTCATCGTCATCGGTA+AGG | + | chr1_2:3890784-3890803 | None:intergenic | 45.0% | |
| ATCATGCGTTTGAGCAATGG+AGG | + | chr1_2:3890809-3890828 | None:intergenic | 45.0% | |
| CATTGCGCTCTTTCAAACGT+CGG | - | chr1_2:3890943-3890962 | Msa0050200:intron | 45.0% | |
| ATTGCGCTCTTTCAAACGTC+GGG | - | chr1_2:3890944-3890963 | Msa0050200:intron | 45.0% | |
| !! | TCTATTTGGTTGGTAGTGGG+AGG | - | chr1_2:3891215-3891234 | Msa0050200:CDS | 45.0% |
| TCACACTGCTCTTACATGGT+TGG | - | chr1_2:3891486-3891505 | Msa0050200:intron | 45.0% | |
| !! | GAGCTTGCTCTGGCTTTAAA+TGG | - | chr1_2:3891885-3891904 | Msa0050200:intron | 45.0% |
| !! | GCTTGCTCTGGCTTTAAATG+GGG | - | chr1_2:3891887-3891906 | Msa0050200:intron | 45.0% |
| !! | ATTGATCCCCTCGGATTAGT+CGG | - | chr1_2:3891931-3891950 | Msa0050200:CDS | 45.0% |
| ATGAAAACTTGCAGAGGAGC+TGG | - | chr1_2:3892538-3892557 | Msa0050200:intron | 45.0% | |
| CAGGTTTGTCTTCTGTGTCA+TGG | - | chr1_2:3892564-3892583 | Msa0050200:intron | 45.0% | |
| TGTTGCAGGATGGAAACAAC+CGG | - | chr1_2:3892974-3892993 | Msa0050200:five_prime_UTR | 45.0% | |
| !! | ATTAATAATAATGTATATAT+AGG | + | chr1_2:3889804-3889823 | None:intergenic | 5.0% |
| !! | TAATTTATATTAATATGTAA+GGG | - | chr1_2:3889885-3889904 | Msa0050200:intron | 5.0% |
| !! | ATTAATAATAATGTATATAT+AGG | + | chr1_2:3889804-3889823 | None:intergenic | 5.0% |
| !! | ATTAATAATAATGTATATAT+AGG | + | chr1_2:3889804-3889823 | None:intergenic | 5.0% |
| !! | TAATTTATATTAATATGTAA+GGG | - | chr1_2:3889885-3889904 | Msa0050200:intron | 5.0% |
| !! | ATTAATAATAATGTATATAT+AGG | + | chr1_2:3889804-3889823 | None:intergenic | 5.0% |
| GTGTTTGGAAGAGATCGGGA+AGG | + | chr1_2:3887161-3887180 | None:intergenic | 50.0% | |
| ! | GTCGGTGTTTGGAAGAGATC+GGG | + | chr1_2:3887165-3887184 | None:intergenic | 50.0% |
| TGCACATCGGAATCCATCGA+TGG | - | chr1_2:3887245-3887264 | Msa0050200:three_prime_UTR | 50.0% | |
| CATGACAACAAGATGGTCGG+CGG | + | chr1_2:3887312-3887331 | None:intergenic | 50.0% | |
| ! | GCAACCGAGTTGACAAGCTT+TGG | - | chr1_2:3888013-3888032 | Msa0050200:intron | 50.0% |
| GACATCCTTCTTTCTTGGGG+AGG | - | chr1_2:3888035-3888054 | Msa0050200:intron | 50.0% | |
| TCAAGCCTCCCCAAGAAAGA+AGG | + | chr1_2:3888043-3888062 | None:intergenic | 50.0% | |
| AGGTACAATATGTGGCCTGG+AGG | - | chr1_2:3888966-3888985 | Msa0050200:intron | 50.0% | |
| CTGTTGCTACACCTCATCTG+GGG | - | chr1_2:3889004-3889023 | Msa0050200:CDS | 50.0% | |
| ! | TACACCTCATCTGGGGTCAA+GGG | - | chr1_2:3889011-3889030 | Msa0050200:CDS | 50.0% |
| GCTTAGTGTCCTCTGTAGTC+TGG | - | chr1_2:3889138-3889157 | Msa0050200:intron | 50.0% | |
| TGAGGTCCTGGGTTCAAATC+CGG | + | chr1_2:3890291-3890310 | None:intergenic | 50.0% | |
| ! | GGATAAGGAGTTTGAGGTCC+TGG | + | chr1_2:3890303-3890322 | None:intergenic | 50.0% |
| CTGGTCTGAGCTAAGGGATA+AGG | + | chr1_2:3890318-3890337 | None:intergenic | 50.0% | |
| GAGGGTTTGGGTAGTTCAAC+TGG | + | chr1_2:3890337-3890356 | None:intergenic | 50.0% | |
| TAGCGGCACATTCATCTCTG+TGG | - | chr1_2:3890546-3890565 | Msa0050200:intron | 50.0% | |
| AAGATCCCAAGCCAACCACT+AGG | + | chr1_2:3891795-3891814 | None:intergenic | 50.0% | |
| !! | TAGTGGTTGGCTTGGGATCT+TGG | - | chr1_2:3891794-3891813 | Msa0050200:intron | 50.0% |
| ! | CTTGGAGTTTGCTCCTCTCA+AGG | - | chr1_2:3891812-3891831 | Msa0050200:intron | 50.0% |
| TTTGCTCCTCTCAAGGTCTC+AGG | - | chr1_2:3891819-3891838 | Msa0050200:intron | 50.0% | |
| ATCGAACCTGAGACCTTGAG+AGG | + | chr1_2:3891828-3891847 | None:intergenic | 50.0% | |
| ! | ATTCCCGCTGGTGCCAATTT+CGG | - | chr1_2:3891846-3891865 | Msa0050200:intron | 50.0% |
| ATGGACTTGCCCACCGAAAT+TGG | + | chr1_2:3891862-3891881 | None:intergenic | 50.0% | |
| ! | AGTCCATACAGAGCTTGCTC+TGG | - | chr1_2:3891875-3891894 | Msa0050200:intron | 50.0% |
| AAGCCAGAGCAAGCTCTGTA+TGG | + | chr1_2:3891881-3891900 | None:intergenic | 50.0% | |
| !! | GGATTAGTCGGTCCTTGGAT+CGG | - | chr1_2:3891943-3891962 | Msa0050200:CDS | 50.0% |
| AACATCGCGGCTTCCATCGA+TGG | + | chr1_2:3887261-3887280 | None:intergenic | 55.0% | |
| TCGATGGAAGCCGCGATGTT+TGG | - | chr1_2:3887261-3887280 | Msa0050200:three_prime_UTR | 55.0% | |
| GTCGGCGGAAGAAGAATCAG+AGG | + | chr1_2:3887297-3887316 | None:intergenic | 55.0% | |
| ! | CGCCGACCATCTTGTTGTCA+TGG | - | chr1_2:3887310-3887329 | Msa0050200:CDS | 55.0% |
| !! | GGACGTAATGGGCGAGAGAT+TGG | - | chr1_2:3888202-3888221 | Msa0050200:intron | 55.0% |
| AATGGGCGAGAGATTGGCAG+AGG | - | chr1_2:3888208-3888227 | Msa0050200:intron | 55.0% | |
| ! | CTACACCTCATCTGGGGTCA+AGG | - | chr1_2:3889010-3889029 | Msa0050200:CDS | 55.0% |
| ! | ACACCTCATCTGGGGTCAAG+GGG | - | chr1_2:3889012-3889031 | Msa0050200:CDS | 55.0% |
| ACGACTGCGGCCACAACATT+AGG | + | chr1_2:3889621-3889640 | None:intergenic | 55.0% | |
| TAATGTTGTGGCCGCAGTCG+TGG | - | chr1_2:3889620-3889639 | Msa0050200:intron | 55.0% | |
| CCACTAGGCCAACCCCAAAT+GGG | + | chr1_2:3891780-3891799 | None:intergenic | 55.0% | |
| ACCACTAGGCCAACCCCAAA+TGG | + | chr1_2:3891781-3891800 | None:intergenic | 55.0% | |
| !! | TTTGGGGTTGGCCTAGTGGT+TGG | - | chr1_2:3891781-3891800 | Msa0050200:intron | 55.0% |
| !! | GTTGGCCTAGTGGTTGGCTT+GGG | - | chr1_2:3891787-3891806 | Msa0050200:intron | 55.0% |
| TTAAATGGGGTCCCCGCAAG+TGG | - | chr1_2:3891900-3891919 | Msa0050200:intron | 55.0% | |
| TAAATGGGGTCCCCGCAAGT+GGG | - | chr1_2:3891901-3891920 | Msa0050200:intron | 55.0% | |
| CAAGGACCGACTAATCCGAG+GGG | + | chr1_2:3891940-3891959 | None:intergenic | 55.0% | |
| CCAAGGACCGACTAATCCGA+GGG | + | chr1_2:3891941-3891960 | None:intergenic | 55.0% | |
| TCCAAGGACCGACTAATCCG+AGG | + | chr1_2:3891942-3891961 | None:intergenic | 55.0% | |
| CTTGCAGAGGAGCTGGTAAC+AGG | - | chr1_2:3892545-3892564 | Msa0050200:intron | 55.0% | |
| GGGAAGCTGTATAGGCCACC+TGG | - | chr1_2:3888892-3888911 | Msa0050200:CDS | 60.0% | |
| TTGCCCCTTGACCCCAGATG+AGG | + | chr1_2:3889018-3889037 | None:intergenic | 60.0% | |
| GGGGTCAAGGGGCAATAAGC+AGG | - | chr1_2:3889023-3889042 | Msa0050200:CDS | 60.0% | |
| AAGGTCCGCAACCACGACTG+CGG | + | chr1_2:3889634-3889653 | None:intergenic | 60.0% | |
| !! | CCCATTTGGGGTTGGCCTAG+TGG | - | chr1_2:3891777-3891796 | Msa0050200:intron | 60.0% |
| !! | GGTTGGCCTAGTGGTTGGCT+TGG | - | chr1_2:3891786-3891805 | Msa0050200:intron | 60.0% |
| GTCTCAGGTTCGATTCCCGC+TGG | - | chr1_2:3891834-3891853 | Msa0050200:intron | 60.0% | |
| CCACCGAAATTGGCACCAGC+GGG | + | chr1_2:3891852-3891871 | None:intergenic | 60.0% | |
| CCCACCGAAATTGGCACCAG+CGG | + | chr1_2:3891853-3891872 | None:intergenic | 60.0% | |
| ! | CCGCTGGTGCCAATTTCGGT+GGG | - | chr1_2:3891850-3891869 | Msa0050200:intron | 60.0% |
| TCAATCCCACCGCCCACTTG+CGG | + | chr1_2:3891916-3891935 | None:intergenic | 60.0% | |
| !! | CCCTCGGATTAGTCGGTCCT+TGG | - | chr1_2:3891938-3891957 | Msa0050200:CDS | 60.0% |
| GGGCGAGAGATTGGCAGAGG+AGG | - | chr1_2:3888211-3888230 | Msa0050200:intron | 65.0% | |
| TGTGGCCGCAGTCGTGGTTG+CGG | - | chr1_2:3889626-3889645 | Msa0050200:intron | 65.0% | |
| ! | CCCGCTGGTGCCAATTTCGG+TGG | - | chr1_2:3891849-3891868 | Msa0050200:intron | 65.0% |
| AATCCCACCGCCCACTTGCG+GGG | + | chr1_2:3891914-3891933 | None:intergenic | 65.0% | |
| CAATCCCACCGCCCACTTGC+GGG | + | chr1_2:3891915-3891934 | None:intergenic | 65.0% | |
| GGCGGTGGGATTGATCCCCT+CGG | - | chr1_2:3891922-3891941 | Msa0050200:CDS | 65.0% | |
| ATGGGGTCCCCGCAAGTGGG+CGG | - | chr1_2:3891904-3891923 | Msa0050200:intron | 70.0% | |
| GGTCCCCGCAAGTGGGCGGT+GGG | - | chr1_2:3891908-3891927 | Msa0050200:intron | 75.0% | |
| ! | GGGTCCCCGCAAGTGGGCGG+TGG | - | chr1_2:3891907-3891926 | Msa0050200:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 3886892 | 3893252 | 3886892 | ID=Msa0050200;Name=Msa0050200 |
| chr1_2 | mRNA | 3886892 | 3893252 | 3886892 | ID=Msa0050200-mRNA-1;Parent=Msa0050200;Name=Msa0050200-mRNA-1;_AED=0.10;_eAED=0.10;_QI=335|1|1|1|0.9|0.90|11|328|354 |
| chr1_2 | exon | 3886892 | 3887162 | 3886892 | ID=Msa0050200-mRNA-1:exon:1002;Parent=Msa0050200-mRNA-1 |
| chr1_2 | exon | 3887245 | 3887373 | 3887245 | ID=Msa0050200-mRNA-1:exon:1001;Parent=Msa0050200-mRNA-1 |
| chr1_2 | exon | 3887495 | 3887592 | 3887495 | ID=Msa0050200-mRNA-1:exon:1000;Parent=Msa0050200-mRNA-1 |
| chr1_2 | exon | 3888799 | 3888913 | 3888799 | ID=Msa0050200-mRNA-1:exon:999;Parent=Msa0050200-mRNA-1 |
| chr1_2 | exon | 3888999 | 3889051 | 3888999 | ID=Msa0050200-mRNA-1:exon:998;Parent=Msa0050200-mRNA-1 |
| chr1_2 | exon | 3889151 | 3889206 | 3889151 | ID=Msa0050200-mRNA-1:exon:997;Parent=Msa0050200-mRNA-1 |
| chr1_2 | exon | 3889289 | 3889452 | 3889289 | ID=Msa0050200-mRNA-1:exon:996;Parent=Msa0050200-mRNA-1 |
| chr1_2 | exon | 3891100 | 3891342 | 3891100 | ID=Msa0050200-mRNA-1:exon:995;Parent=Msa0050200-mRNA-1 |
| chr1_2 | exon | 3891912 | 3891982 | 3891912 | ID=Msa0050200-mRNA-1:exon:994;Parent=Msa0050200-mRNA-1 |
| chr1_2 | exon | 3892577 | 3892644 | 3892577 | ID=Msa0050200-mRNA-1:exon:993;Parent=Msa0050200-mRNA-1 |
| chr1_2 | exon | 3892793 | 3893252 | 3892793 | ID=Msa0050200-mRNA-1:exon:992;Parent=Msa0050200-mRNA-1 |
| chr1_2 | five_prime_UTR | 3892918 | 3893252 | 3892918 | ID=Msa0050200-mRNA-1:five_prime_utr;Parent=Msa0050200-mRNA-1 |
| chr1_2 | CDS | 3892793 | 3892917 | 3892793 | ID=Msa0050200-mRNA-1:cds;Parent=Msa0050200-mRNA-1 |
| chr1_2 | CDS | 3892577 | 3892644 | 3892577 | ID=Msa0050200-mRNA-1:cds;Parent=Msa0050200-mRNA-1 |
| chr1_2 | CDS | 3891912 | 3891982 | 3891912 | ID=Msa0050200-mRNA-1:cds;Parent=Msa0050200-mRNA-1 |
| chr1_2 | CDS | 3891100 | 3891342 | 3891100 | ID=Msa0050200-mRNA-1:cds;Parent=Msa0050200-mRNA-1 |
| chr1_2 | CDS | 3889289 | 3889452 | 3889289 | ID=Msa0050200-mRNA-1:cds;Parent=Msa0050200-mRNA-1 |
| chr1_2 | CDS | 3889151 | 3889206 | 3889151 | ID=Msa0050200-mRNA-1:cds;Parent=Msa0050200-mRNA-1 |
| chr1_2 | CDS | 3888999 | 3889051 | 3888999 | ID=Msa0050200-mRNA-1:cds;Parent=Msa0050200-mRNA-1 |
| chr1_2 | CDS | 3888799 | 3888913 | 3888799 | ID=Msa0050200-mRNA-1:cds;Parent=Msa0050200-mRNA-1 |
| chr1_2 | CDS | 3887495 | 3887592 | 3887495 | ID=Msa0050200-mRNA-1:cds;Parent=Msa0050200-mRNA-1 |
| chr1_2 | CDS | 3887302 | 3887373 | 3887302 | ID=Msa0050200-mRNA-1:cds;Parent=Msa0050200-mRNA-1 |
| chr1_2 | three_prime_UTR | 3887245 | 3887301 | 3887245 | ID=Msa0050200-mRNA-1:three_prime_utr;Parent=Msa0050200-mRNA-1 |
| chr1_2 | three_prime_UTR | 3886892 | 3887162 | 3886892 | ID=Msa0050200-mRNA-1:three_prime_utr;Parent=Msa0050200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
