AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0643320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0643320 MtrunA17_Chr4g0030021 97.203 286 7 1 1 286 1 285 0.0 576
Msa0643320 MtrunA17_Chr4g0073251 50.758 264 126 3 1 264 1 260 1.52e-89 267
Msa0643320 MtrunA17_Chr6g0462061 46.429 280 133 3 2 281 3 265 3.17e-83 251
Msa0643320 MtrunA17_Chr8g0366571 46.377 276 137 4 1 274 1 267 9.56e-78 237
Msa0643320 MtrunA17_Chr1g0199961 45.000 280 137 3 2 281 3 265 1.87e-75 231
Msa0643320 MtrunA17_Chr8g0389221 43.985 266 142 3 1 266 1 259 9.29e-75 229
Msa0643320 MtrunA17_Chr5g0411131 45.255 274 143 3 1 274 1 267 3.00e-63 200
Msa0643320 MtrunA17_Chr4g0062101 36.882 263 162 2 1 263 4 262 1.19e-60 193
Msa0643320 MtrunA17_Chr8g0386471 34.201 269 170 3 1 269 3 264 6.85e-58 186
Msa0643320 MtrunA17_Chr5g0447681 32.046 259 146 7 4 259 50 281 8.37e-33 122
Msa0643320 MtrunA17_Chr2g0307651 36.986 146 90 1 2 147 3 146 7.48e-20 84.7
Msa0643320 MtrunA17_Chr2g0307641 35.870 92 57 1 186 275 2 93 7.98e-17 73.9
Msa0643320 MtrunA17_Chr5g0447671 25.000 144 80 3 119 258 47 166 5.84e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0643320 AT3G45600.1 78.322 286 61 1 1 286 1 285 1.22e-171 476
Msa0643320 AT5G60220.1 73.285 277 73 1 1 277 1 276 1.43e-130 374
Msa0643320 AT3G45600.2 81.871 171 31 0 1 171 1 171 2.53e-103 300
Msa0643320 AT2G23810.1 47.794 272 137 4 2 272 3 270 3.94e-89 266
Msa0643320 AT4G28050.1 45.833 264 138 3 1 264 2 260 9.58e-83 250
Msa0643320 AT4G30430.1 43.066 274 147 4 1 274 2 266 2.68e-82 249
Msa0643320 AT2G19580.1 44.569 267 140 4 1 266 1 260 2.08e-71 221
Msa0643320 AT3G12090.1 44.484 281 136 6 2 281 3 264 1.45e-69 217
Msa0643320 AT5G46700.1 43.796 274 147 3 1 274 1 267 6.77e-69 215
Msa0643320 AT1G18520.1 37.778 270 163 3 2 269 3 269 3.45e-65 205
Msa0643320 AT4G23410.1 39.502 281 151 4 2 281 3 265 4.82e-64 202
Msa0643320 AT1G63260.6 33.088 272 167 4 1 272 3 259 1.13e-55 181
Msa0643320 AT1G63260.1 33.088 272 167 4 1 272 3 259 1.13e-55 181
Msa0643320 AT1G63260.3 33.088 272 167 4 1 272 3 259 2.10e-55 181
Msa0643320 AT1G63260.2 35.249 261 156 4 1 261 3 250 6.35e-54 176
Msa0643320 AT1G63260.5 34.978 223 138 3 1 223 3 218 3.96e-47 157
Msa0643320 AT2G03840.1 28.800 250 165 5 16 259 27 269 9.14e-37 132
Msa0643320 AT1G63260.4 34.426 183 114 2 1 183 3 179 7.98e-36 128
Msa0643320 AT5G23030.1 29.658 263 177 3 1 263 2 256 3.50e-34 125
Msa0643320 AT5G57810.1 28.358 268 156 8 9 258 60 309 1.12e-24 101

Find 77 sgRNAs with CRISPR-Local

Find 459 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTATGAATAGAGGGTATT+TGG 0.185250 4_3:+46153232 Msa0643320:CDS
GCTTATGTTGTGACGGATAA+AGG 0.213333 4_3:+46153197 Msa0643320:CDS
TTAGTCATTGGTGTGCTTAT+TGG 0.213548 4_3:+46153161 Msa0643320:CDS
AGCTATTTATGTTAGGGTTT+TGG 0.217204 4_3:+46159849 Msa0643320:three_prime_UTR
GGAAGATTAGTTCTTGTATA+AGG 0.219711 4_3:+46153318 Msa0643320:CDS
GAAATTCCTATTATGATTAA+TGG 0.245777 4_3:-46153053 None:intergenic
TATTATTTGCAGGATTATTC+TGG 0.279394 4_3:+46153257 Msa0643320:CDS
AGTGGCTAGTGATGAGTATT+GGG 0.307047 4_3:+46153295 Msa0643320:CDS
GATTGGAATTGATAGTAAAA+AGG 0.320426 4_3:-46152964 None:intergenic
AAGAAAACTCAATCCTATTC+AGG 0.328328 4_3:+46153412 Msa0643320:CDS
AGCTTTAAGCTATTTATGTT+AGG 0.340610 4_3:+46159842 Msa0643320:three_prime_UTR
CAATCCTAGGAGGTGGAATA+TGG 0.344333 4_3:+46152982 Msa0643320:CDS
AGAACAAGTAACCACTTAAT+TGG 0.345846 4_3:+46152924 Msa0643320:CDS
TTGTTCCATTTGTTGCAGTC+AGG 0.346134 4_3:-46159568 None:intergenic
CAATGGCCATTAATCATAAT+AGG 0.346510 4_3:+46153047 Msa0643320:CDS
GTATTTGGATTATTATTTGC+AGG 0.348461 4_3:+46153247 Msa0643320:CDS
GTTGTCATGTTCTTAGTCAT+TGG 0.349196 4_3:+46153149 Msa0643320:CDS
GTCATCCTTGCTTCACCATA+AGG 0.359601 4_3:-46159769 None:intergenic
TTACATCTAATCATAATAAA+TGG 0.361465 4_3:+46160019 Msa0643320:three_prime_UTR
GAAGATTAGTTCTTGTATAA+GGG 0.367420 4_3:+46153319 Msa0643320:CDS
ATTGTCTCAAATTTCTTCAA+TGG 0.388706 4_3:+46153030 Msa0643320:CDS
CGTTGTAGTATGTATGACTT+TGG 0.392238 4_3:+46159897 Msa0643320:three_prime_UTR
ATATAAGAACATACCTGAAT+AGG 0.397801 4_3:-46153425 None:intergenic
CTTATGTTGTGACGGATAAA+GGG 0.405211 4_3:+46153198 Msa0643320:CDS
TTACTATCAATTCCAATCCT+AGG 0.408045 4_3:+46152969 Msa0643320:CDS
CGTATCAAAACGAGACAGTA+TGG 0.408828 4_3:+46159512 Msa0643320:CDS
GTAACACGCCCCTGCAAAAC+CGG 0.415261 4_3:-46153096 None:intergenic
ATCATGGTTGTTTCATTAGC+CGG 0.418747 4_3:+46153077 Msa0643320:CDS
GCTTTAAGCTATTTATGTTA+GGG 0.425111 4_3:+46159843 Msa0643320:three_prime_UTR
CCATTTGTTGCAGTCAGGGT+TGG 0.429976 4_3:-46159563 None:intergenic
TCTTGCAAAGCTGGTGTACT+TGG 0.432450 4_3:+46159622 Msa0643320:CDS
CCAACCCTGACTGCAACAAA+TGG 0.433240 4_3:+46159563 Msa0643320:CDS
AATCATAACAAAGTTGTTGT+TGG 0.436839 4_3:-46159594 None:intergenic
TGTTCCATTTGTTGCAGTCA+GGG 0.445449 4_3:-46159567 None:intergenic
CGGATAAAGGGTCTGGAAGA+AGG 0.448561 4_3:+46153210 Msa0643320:CDS
TTCTAAAGCTTGTAGGAAGT+TGG 0.451166 4_3:+46153343 Msa0643320:CDS
GATTGTGATTCTTGCAAAGC+TGG 0.451997 4_3:+46159613 Msa0643320:CDS
TAAGGGATTCTAAAGCTTGT+AGG 0.452393 4_3:+46153336 Msa0643320:CDS
GAGTGGCTAGTGATGAGTAT+TGG 0.454709 4_3:+46153294 Msa0643320:CDS
ATGGATAATGATGAACCTTA+TGG 0.465091 4_3:+46159754 Msa0643320:CDS
GGAAGAAGGGTTATGAATAG+AGG 0.468654 4_3:+46153224 Msa0643320:CDS
AACGAGACAGTATGGATTCA+AGG 0.469950 4_3:+46159520 Msa0643320:CDS
GAGATTTATAGATGAAGAGT+TGG 0.481290 4_3:-46152806 None:intergenic
TTGGTAGTCTCAAGAAGAGT+TGG 0.481632 4_3:+46159641 Msa0643320:CDS
GTTGTGACGGATAAAGGGTC+TGG 0.489336 4_3:+46153203 Msa0643320:CDS
AGTTTAGTAGACCAATTAAG+TGG 0.514410 4_3:-46152935 None:intergenic
AAGAACATATCAGCAGTCTC+AGG 0.515949 4_3:-46153386 None:intergenic
ATTTGCAGGATTATTCTGGT+TGG 0.516447 4_3:+46153261 Msa0643320:CDS
GCAGGATTATTCTGGTTGGT+TGG 0.518544 4_3:+46153265 Msa0643320:CDS
CATATTCCACCTCCTAGGAT+TGG 0.519722 4_3:-46152981 None:intergenic
AATATTTGCTTATGTTGTGA+CGG 0.520715 4_3:+46153190 Msa0643320:CDS
GTAGTCTCAAGAAGAGTTGG+AGG 0.530350 4_3:+46159644 Msa0643320:CDS
CATAATAGGAATTTCCATCA+TGG 0.533378 4_3:+46153061 Msa0643320:CDS
ACTTTGGATTTAATCTTGCA+AGG 0.533904 4_3:+46159913 Msa0643320:three_prime_UTR
TCAATTCCAATCCTAGGAGG+TGG 0.549195 4_3:+46152975 Msa0643320:CDS
TACGAATAGCCACAATCTGT+TGG 0.552791 4_3:-46159493 None:intergenic
GGCTAATGAAACAACCATGA+TGG 0.553697 4_3:-46153075 None:intergenic
TGCAAGCCTCCAACAGATTG+TGG 0.554204 4_3:+46159484 Msa0643320:CDS
GGATAAAGGGTCTGGAAGAA+GGG 0.556945 4_3:+46153211 Msa0643320:CDS
ACAGTATGGATTCAAGGAGC+AGG 0.564050 4_3:+46159526 Msa0643320:CDS
TTAGCCATATTCCACCTCCT+AGG 0.565069 4_3:-46152986 None:intergenic
GTGGCTAGTGATGAGTATTG+GGG 0.574200 4_3:+46153296 Msa0643320:CDS
GAAGAAGGGTTATGAATAGA+GGG 0.576688 4_3:+46153225 Msa0643320:CDS
GAATAGCCACAATCTGTTGG+AGG 0.579129 4_3:-46159490 None:intergenic
AAGCTTGTAGGAAGTTGGCT+AGG 0.591037 4_3:+46153348 Msa0643320:CDS
AATTAAAGATGAAAAGCACT+AGG 0.600562 4_3:-46159802 None:intergenic
ATTTATAGATGAAGAGTTGG+TGG 0.606661 4_3:-46152803 None:intergenic
TGGTTGGTTGGAAGAGAGAG+TGG 0.610133 4_3:+46153277 Msa0643320:CDS
CTATCAATTCCAATCCTAGG+AGG 0.622769 4_3:+46152972 Msa0643320:CDS
CAAGGAGCAGGATCACTAGT+GGG 0.627646 4_3:+46159538 Msa0643320:CDS
TGGCTAGTGATGAGTATTGG+GGG 0.638689 4_3:+46153297 Msa0643320:CDS
TCAAGGAGCAGGATCACTAG+TGG 0.640470 4_3:+46159537 Msa0643320:CDS
ATGAACCTTATGGTGAAGCA+AGG 0.655059 4_3:+46159764 Msa0643320:CDS
CAACTATGTAAACAACGACA+AGG 0.655099 4_3:-46159702 None:intergenic
AACGTAACAAGAAAGTGTTA+CGG 0.663996 4_3:-46153118 None:intergenic
TGACTAAGAACATGACAACA+AGG 0.676649 4_3:-46153145 None:intergenic
CAAAGTCATACATACTACAA+CGG 0.678267 4_3:-46159896 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG + chr4_3:46158643-46158662 Msa0643320:intron 0.0%
!! TATATATATATATATATATA+GGG + chr4_3:46158642-46158661 Msa0643320:intron 0.0%
!! ATATATATATATATATATAT+GGG - chr4_3:46158643-46158662 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr4_3:46158642-46158661 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG + chr4_3:46158642-46158661 Msa0643320:intron 0.0%
!! ATATATATATATATATATAT+GGG + chr4_3:46158643-46158662 Msa0643320:intron 0.0%
!! TATATATATATATATATATA+TGG - chr4_3:46158642-46158661 None:intergenic 0.0%
!! TATATATATATATATATATA+AGG + chr4_3:46158642-46158661 Msa0643320:intron 0.0%
!!! ATATTTTATTCCATTTTTTT+AGG + chr4_3:46153444-46153463 Msa0643320:intron 10.0%
!!! TTTTTATTTGAAAGAAAATA+TGG + chr4_3:46153534-46153553 Msa0643320:intron 10.0%
!! TAAGAAAAATGTATAATTAA+AGG + chr4_3:46153687-46153706 Msa0643320:intron 10.0%
!! AAGAAAAATGTATAATTAAA+GGG + chr4_3:46153688-46153707 Msa0643320:intron 10.0%
!!! ATTTAATCTCATTTTTATAA+GGG + chr4_3:46154330-46154349 Msa0643320:intron 10.0%
!! AGTATAATATAAGATATTAT+GGG + chr4_3:46155907-46155926 Msa0643320:intron 10.0%
!!! TGACTTAATTTTAATTTTTT+TGG + chr4_3:46156450-46156469 Msa0643320:intron 10.0%
!!! ATATTTATGATTTTTTTTAG+GGG + chr4_3:46157061-46157080 Msa0643320:intron 10.0%
!!! TATTATTATGATTTTTTTGA+AGG - chr4_3:46157150-46157169 None:intergenic 10.0%
!! CAAAAAAATCATAATAATAA+TGG + chr4_3:46157151-46157170 Msa0643320:intron 10.0%
!!! ATTATGTTTTTTTTTTTTTG+TGG - chr4_3:46158341-46158360 None:intergenic 10.0%
!!! TCATTTTTTTTTTTTTTGGT+AGG - chr4_3:46152905-46152924 None:intergenic 15.0%
!!! GTTCTCATTTTTTTTTTTTT+TGG - chr4_3:46152909-46152928 None:intergenic 15.0%
!! AGAAAAATGTATAATTAAAG+GGG + chr4_3:46153689-46153708 Msa0643320:intron 15.0%
!! AAAGTGAAATATATTGTATT+GGG + chr4_3:46153712-46153731 Msa0643320:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr4_3:46153752-46153771 Msa0643320:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr4_3:46153753-46153772 Msa0643320:intron 15.0%
!!! ACTTTTTTAAATCGTTTTAA+AGG + chr4_3:46153970-46153989 Msa0643320:intron 15.0%
!!! GATTTAATCTCATTTTTATA+AGG + chr4_3:46154329-46154348 Msa0643320:intron 15.0%
!!! ACCAAAAAAATATTTTTACA+GGG - chr4_3:46154612-46154631 None:intergenic 15.0%
!!! AACCAAAAAAATATTTTTAC+AGG - chr4_3:46154613-46154632 None:intergenic 15.0%
!!! AATATGAATCAATTTTACAA+GGG - chr4_3:46154690-46154709 None:intergenic 15.0%
!!! AAATATGAATCAATTTTACA+AGG - chr4_3:46154691-46154710 None:intergenic 15.0%
!!! TTAGTTTTTAAAGAAAAGTA+TGG + chr4_3:46154740-46154759 Msa0643320:intron 15.0%
!!! TAGTTTTTAAAGAAAAGTAT+GGG + chr4_3:46154741-46154760 Msa0643320:intron 15.0%
!! ATAATTGAGAATTGATATTA+TGG + chr4_3:46155212-46155231 Msa0643320:intron 15.0%
!! TTTAATACACATAAAAACAA+AGG - chr4_3:46155408-46155427 None:intergenic 15.0%
!! GAGTATAATATAAGATATTA+TGG + chr4_3:46155906-46155925 Msa0643320:intron 15.0%
!!! AATTTTTTTGGTTTATGTAT+TGG + chr4_3:46156462-46156481 Msa0643320:intron 15.0%
!!! ATGATTTTAGTAAAAGTATT+TGG + chr4_3:46156768-46156787 Msa0643320:intron 15.0%
!! TAAACTCTTGATTAAAAATA+TGG + chr4_3:46157033-46157052 Msa0643320:intron 15.0%
!! TTACATCTAATCATAATAAA+TGG + chr4_3:46160019-46160038 Msa0643320:three_prime_UTR 15.0%
!! GAAATTCCTATTATGATTAA+TGG - chr4_3:46153056-46153075 None:intergenic 20.0%
!! GAAAGTGAAATATATTGTAT+TGG + chr4_3:46153711-46153730 Msa0643320:intron 20.0%
!! AATGTTGCAAAAATGATATT+AGG + chr4_3:46154019-46154038 Msa0643320:intron 20.0%
!!! ATCTTTTCAAGACATAATTT+AGG - chr4_3:46154412-46154431 None:intergenic 20.0%
!!! CAAAGATAGAAATATTTTGT+TGG - chr4_3:46154472-46154491 None:intergenic 20.0%
!!! CAACAAAATATTTCTATCTT+TGG + chr4_3:46154470-46154489 Msa0643320:intron 20.0%
!!! TCCCTGTAAAAATATTTTTT+TGG + chr4_3:46154608-46154627 Msa0643320:intron 20.0%
!!! CCAAATTTTTTAAATTTGCA+GGG - chr4_3:46154641-46154660 None:intergenic 20.0%
!!! ACCAAATTTTTTAAATTTGC+AGG - chr4_3:46154642-46154661 None:intergenic 20.0%
!!! TCTACTTTTCCTTTAAAAAT+TGG + chr4_3:46154932-46154951 Msa0643320:intron 20.0%
!! AATTATCAAACCAACATTAT+TGG - chr4_3:46155198-46155217 None:intergenic 20.0%
!! TTTCTTAAGAAATGTGAAAA+AGG - chr4_3:46155332-46155351 None:intergenic 20.0%
!! ACAAGTTAGTAGTATTAATT+AGG + chr4_3:46155449-46155468 Msa0643320:intron 20.0%
!! CAAGTTAGTAGTATTAATTA+GGG + chr4_3:46155450-46155469 Msa0643320:intron 20.0%
!! AAGTTAGTAGTATTAATTAG+GGG + chr4_3:46155451-46155470 Msa0643320:intron 20.0%
!! AGGACAAATATAAAATCAAA+TGG + chr4_3:46155533-46155552 Msa0643320:intron 20.0%
!! GGACAAATATAAAATCAAAT+GGG + chr4_3:46155534-46155553 Msa0643320:intron 20.0%
!! ATAGTGCAAATATTCTAAAT+AGG - chr4_3:46155679-46155698 None:intergenic 20.0%
!!! CTATCTTATGTTTTATGAAT+AGG - chr4_3:46156017-46156036 None:intergenic 20.0%
!!! TAATTTGAAACAAGAAGATA+TGG + chr4_3:46156089-46156108 Msa0643320:intron 20.0%
!! TAATCACCAATAAAGAAAAA+AGG - chr4_3:46156384-46156403 None:intergenic 20.0%
!! CAAATTAAAGTCATAAAGAT+GGG - chr4_3:46156499-46156518 None:intergenic 20.0%
!! CCAGAATATAATTTGAATAT+AGG - chr4_3:46156618-46156637 None:intergenic 20.0%
!! CCTATATTCAAATTATATTC+TGG + chr4_3:46156615-46156634 Msa0643320:intron 20.0%
!! AAAGTAGAAATACTTATGAA+TGG + chr4_3:46156668-46156687 Msa0643320:intron 20.0%
!! AAGTAGAAATACTTATGAAT+GGG + chr4_3:46156669-46156688 Msa0643320:intron 20.0%
!! ATATTGGATAGTAATTAGTT+TGG - chr4_3:46156936-46156955 None:intergenic 20.0%
!!! TAAGCAAAAAACAACTTTTT+AGG + chr4_3:46157477-46157496 Msa0643320:intron 20.0%
!! AACAATGTATAAAATATGCA+AGG + chr4_3:46158293-46158312 Msa0643320:intron 20.0%
!!! ATGTTTTTTTTTTTTTGTGG+TGG - chr4_3:46158338-46158357 None:intergenic 20.0%
!! TCTCATCACATTAATAAAAA+GGG - chr4_3:46158501-46158520 None:intergenic 20.0%
!! TTCTCATCACATTAATAAAA+AGG - chr4_3:46158502-46158521 None:intergenic 20.0%
!! TTATTAATGTGATGAGAATT+AGG + chr4_3:46158504-46158523 Msa0643320:intron 20.0%
!! TATTAATGTGATGAGAATTA+GGG + chr4_3:46158505-46158524 Msa0643320:intron 20.0%
!! AAGTTAATAAATACACCTTA+AGG + chr4_3:46159141-46159160 Msa0643320:intron 20.0%
!!! TACTCATTTTGTATATTTGT+TGG + chr4_3:46159951-46159970 Msa0643320:three_prime_UTR 20.0%
!! GATTGGAATTGATAGTAAAA+AGG - chr4_3:46152967-46152986 None:intergenic 25.0%
! ATTGTCTCAAATTTCTTCAA+TGG + chr4_3:46153030-46153049 Msa0643320:CDS 25.0%
! AATATTTGCTTATGTTGTGA+CGG + chr4_3:46153190-46153209 Msa0643320:CDS 25.0%
! GTATTTGGATTATTATTTGC+AGG + chr4_3:46153247-46153266 Msa0643320:CDS 25.0%
! TATTATTTGCAGGATTATTC+TGG + chr4_3:46153257-46153276 Msa0643320:CDS 25.0%
!! GAAGATTAGTTCTTGTATAA+GGG + chr4_3:46153319-46153338 Msa0643320:CDS 25.0%
! ATATAAGAACATACCTGAAT+AGG - chr4_3:46153428-46153447 None:intergenic 25.0%
! TTGAAAGAAAATATGGAGTT+AGG + chr4_3:46153541-46153560 Msa0643320:intron 25.0%
!!! TTAGGAATTTTTGGGATTTT+AGG + chr4_3:46153571-46153590 Msa0643320:intron 25.0%
! TTGTGTCAATTAAATTGTGA+CGG - chr4_3:46153648-46153667 None:intergenic 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG + chr4_3:46153799-46153818 Msa0643320:intron 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG + chr4_3:46153800-46153819 Msa0643320:intron 25.0%
!!! GGCACTTTTTTTTAGAAAAT+GGG + chr4_3:46153821-46153840 Msa0643320:intron 25.0%
! TGATTGAACTTATATCAAGT+CGG - chr4_3:46154239-46154258 None:intergenic 25.0%
!! GAAGCAAAAATTTAGTTCAT+CGG - chr4_3:46154293-46154312 None:intergenic 25.0%
! ACAAGTTAAGAATCTAAAAG+TGG + chr4_3:46154378-46154397 Msa0643320:intron 25.0%
! CCCTGCAAATTTAAAAAATT+TGG + chr4_3:46154638-46154657 Msa0643320:intron 25.0%
!!! AAAAATTTGGTTTTGATCCT+TGG + chr4_3:46154651-46154670 Msa0643320:intron 25.0%
!!! ACTTTTCCTTTAAAAATTGG+TGG + chr4_3:46154935-46154954 Msa0643320:intron 25.0%
! AAATAAAGAACCACAACTTT+AGG - chr4_3:46155087-46155106 None:intergenic 25.0%
! TAACGGTGCATTAAAAAAAA+CGG + chr4_3:46155136-46155155 Msa0643320:intron 25.0%
! AAAAACGACTTTGACAAAAA+TGG + chr4_3:46155168-46155187 Msa0643320:intron 25.0%
! ATTGAGAATTGATATTATGG+TGG + chr4_3:46155215-46155234 Msa0643320:intron 25.0%
!!! ATATATGATGATGACACTTT+TGG - chr4_3:46155255-46155274 None:intergenic 25.0%
! CATAAAAACAAAGGACAATT+TGG - chr4_3:46155399-46155418 None:intergenic 25.0%
! TGAAAAGGAGTTTACATTTA+AGG + chr4_3:46155513-46155532 Msa0643320:intron 25.0%
! CAAATATAAAATCAAATGGG+TGG + chr4_3:46155537-46155556 Msa0643320:intron 25.0%
! CTAAATAGGTCAAGTAATAT+GGG - chr4_3:46155665-46155684 None:intergenic 25.0%
! TCTAAATAGGTCAAGTAATA+TGG - chr4_3:46155666-46155685 None:intergenic 25.0%
! TCTCATAACAATCCATTATA+GGG - chr4_3:46155988-46156007 None:intergenic 25.0%
! ATCTCATAACAATCCATTAT+AGG - chr4_3:46155989-46156008 None:intergenic 25.0%
! TGAAAATATGTGTTTACGTA+TGG + chr4_3:46156173-46156192 Msa0643320:intron 25.0%
! GAAAATATGTGTTTACGTAT+GGG + chr4_3:46156174-46156193 Msa0643320:intron 25.0%
! TGCTTCATAAGTTTCAAATT+CGG - chr4_3:46156247-46156266 None:intergenic 25.0%
! CCAAATTAAAGTCATAAAGA+TGG - chr4_3:46156500-46156519 None:intergenic 25.0%
! CCATCTTTATGACTTTAATT+TGG + chr4_3:46156497-46156516 Msa0643320:intron 25.0%
!!! CTTTATGACTTTAATTTGGT+TGG + chr4_3:46156501-46156520 Msa0643320:intron 25.0%
!! ATTCTTATGTTTTGTGAGTT+GGG - chr4_3:46156586-46156605 None:intergenic 25.0%
! AGTAGAAATACTTATGAATG+GGG + chr4_3:46156670-46156689 Msa0643320:intron 25.0%
! TTGTTAAATTGTGAGTTTCA+TGG + chr4_3:46156714-46156733 Msa0643320:intron 25.0%
!! ATTTGGTAGTTGTAACTATT+TGG + chr4_3:46156785-46156804 Msa0643320:intron 25.0%
! AGTGACTATAGAGTATATAT+TGG - chr4_3:46156952-46156971 None:intergenic 25.0%
!!! TACTCTATAGTCACTTTTTT+TGG + chr4_3:46156957-46156976 Msa0643320:intron 25.0%
!!! TTATGATTTTTTTTAGGGGA+TGG + chr4_3:46157065-46157084 Msa0643320:intron 25.0%
! GGTCAATATATTTATGATGA+AGG + chr4_3:46157086-46157105 Msa0643320:intron 25.0%
!! AATGGTTTAAGTCCTTTTTA+AGG + chr4_3:46157169-46157188 Msa0643320:intron 25.0%
!! ATGGTTTAAGTCCTTTTTAA+GGG + chr4_3:46157170-46157189 Msa0643320:intron 25.0%
!! AAATTGGCAGAAAACTTTTT+AGG - chr4_3:46157242-46157261 None:intergenic 25.0%
!! TAAAAAGTTTTCTGCCAATT+TGG + chr4_3:46157241-46157260 Msa0643320:intron 25.0%
! ATATAATCAAAGGACCAAAT+TGG - chr4_3:46157258-46157277 None:intergenic 25.0%
! TATTAAACTGCAATTGCTTT+GGG - chr4_3:46157428-46157447 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - chr4_3:46157576-46157595 None:intergenic 25.0%
!! ATGTATCTAGTTTATAAACG+TGG - chr4_3:46157528-46157547 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG + chr4_3:46157576-46157595 Msa0643320:intron 25.0%
!!! CAAATCAAACATGTTGTTTT+TGG - chr4_3:46157710-46157729 None:intergenic 25.0%
! AAAGAAGGAGAATTGATAAA+GGG - chr4_3:46157869-46157888 None:intergenic 25.0%
! TAAAGAAGGAGAATTGATAA+AGG - chr4_3:46157870-46157889 None:intergenic 25.0%
! TAAAGGAGAATTGATAAAGA+AGG - chr4_3:46157884-46157903 None:intergenic 25.0%
! ACTAAAATAGACATAGCTAA+AGG - chr4_3:46157901-46157920 None:intergenic 25.0%
!! TGAGAGAATTGATTTATGTT+TGG - chr4_3:46157960-46157979 None:intergenic 25.0%
! CGTTGTTTGATTCTAAATTT+AGG + chr4_3:46158036-46158055 Msa0643320:intron 25.0%
! TTTGATTCTAAATTTAGGAG+TGG + chr4_3:46158041-46158060 Msa0643320:intron 25.0%
!! ATTTGAGTCTTTTAACCATT+TGG + chr4_3:46158116-46158135 Msa0643320:intron 25.0%
!! TTAACCATTTGGTTTAAGAT+TGG + chr4_3:46158127-46158146 Msa0643320:intron 25.0%
! GTTCTAATACTAACTAACAT+AGG - chr4_3:46158232-46158251 None:intergenic 25.0%
!!! TTTTTTTTTTTTGTGGTGGT+CGG - chr4_3:46158334-46158353 None:intergenic 25.0%
! TATATATAAGACACTGAAGA+AGG - chr4_3:46158630-46158649 None:intergenic 25.0%
!! ACACCTTCTAAAAAATAAGT+GGG + chr4_3:46158832-46158851 Msa0643320:intron 25.0%
!! ACACCTTCTAAAAAATAAGT+GGG - chr4_3:46158832-46158851 None:intergenic 25.0%
! AAGTTGTTAAATACACCTTA+AGG - chr4_3:46158936-46158955 None:intergenic 25.0%
! ACACCTTAATAAAAACTAGT+GGG + chr4_3:46158979-46158998 Msa0643320:intron 25.0%
!! ACTCATTCTAAAAAGTAAGT+GGG - chr4_3:46159247-46159266 None:intergenic 25.0%
!! TACTCATTCTAAAAAGTAAG+TGG - chr4_3:46159248-46159267 None:intergenic 25.0%
! GACTGTAGATAAACAAAAAA+AGG - chr4_3:46159457-46159476 None:intergenic 25.0%
!!! TTTTTTGTTTATCTACAGTC+TGG + chr4_3:46159457-46159476 Msa0643320:intron 25.0%
! AATCATAACAAAGTTGTTGT+TGG - chr4_3:46159597-46159616 None:intergenic 25.0%
! ATATCGAAACAACAAAAAGA+TGG + chr4_3:46159735-46159754 Msa0643320:CDS 25.0%
!!! AATTAAAGATGAAAAGCACT+AGG - chr4_3:46159805-46159824 None:intergenic 25.0%
!!! AGCTTTAAGCTATTTATGTT+AGG + chr4_3:46159842-46159861 Msa0643320:three_prime_UTR 25.0%
!! GCTTTAAGCTATTTATGTTA+GGG + chr4_3:46159843-46159862 Msa0643320:three_prime_UTR 25.0%
ATTTATAGATGAAGAGTTGG+TGG - chr4_3:46152806-46152825 None:intergenic 30.0%
GAGATTTATAGATGAAGAGT+TGG - chr4_3:46152809-46152828 None:intergenic 30.0%
! TTTTGGTAGGTGAATTTCTT+TGG - chr4_3:46152892-46152911 None:intergenic 30.0%
AGAACAAGTAACCACTTAAT+TGG + chr4_3:46152924-46152943 Msa0643320:CDS 30.0%
AGTTTAGTAGACCAATTAAG+TGG - chr4_3:46152938-46152957 None:intergenic 30.0%
TTACTATCAATTCCAATCCT+AGG + chr4_3:46152969-46152988 Msa0643320:CDS 30.0%
CAATGGCCATTAATCATAAT+AGG + chr4_3:46153047-46153066 Msa0643320:CDS 30.0%
CATAATAGGAATTTCCATCA+TGG + chr4_3:46153061-46153080 Msa0643320:CDS 30.0%
!! AACGTAACAAGAAAGTGTTA+CGG - chr4_3:46153121-46153140 None:intergenic 30.0%
! GGAAGATTAGTTCTTGTATA+AGG + chr4_3:46153318-46153337 Msa0643320:CDS 30.0%
AAGAAAACTCAATCCTATTC+AGG + chr4_3:46153412-46153431 Msa0643320:CDS 30.0%
TCACAAGACACCTAAAAAAA+TGG - chr4_3:46153457-46153476 None:intergenic 30.0%
!!! TTTTTTAGGTGTCTTGTGAA+TGG + chr4_3:46153458-46153477 Msa0643320:intron 30.0%
!!! TTTTTAGGTGTCTTGTGAAT+GGG + chr4_3:46153459-46153478 Msa0643320:intron 30.0%
AAGAAAATATGGAGTTAGGA+AGG + chr4_3:46153545-46153564 Msa0643320:intron 30.0%
!!! GAAGGTGTTTAGGAATTTTT+GGG + chr4_3:46153563-46153582 Msa0643320:intron 30.0%
! TTTAGGAGAGTAGTTTTTCT+AGG + chr4_3:46153588-46153607 Msa0643320:intron 30.0%
!!! GGGCACTTTTTTTTAGAAAA+TGG + chr4_3:46153820-46153839 Msa0643320:intron 30.0%
CAAAATTCATAGATCTTACC+GGG - chr4_3:46154049-46154068 None:intergenic 30.0%
CCAAAATTCATAGATCTTAC+CGG - chr4_3:46154050-46154069 None:intergenic 30.0%
!! ATCATTTTAACCATGGATCA+TGG - chr4_3:46154096-46154115 None:intergenic 30.0%
!! TGGTTCAATCATTTTAACCA+TGG - chr4_3:46154103-46154122 None:intergenic 30.0%
TGAACTAGTTACCGTTTAAA+TGG + chr4_3:46154207-46154226 Msa0643320:intron 30.0%
GATTGAACTTATATCAAGTC+GGG - chr4_3:46154238-46154257 None:intergenic 30.0%
AAACTATAATTCAACTTCCG+AGG + chr4_3:46154258-46154277 Msa0643320:intron 30.0%
CAAAATGTCAGATATTTGCA+GGG - chr4_3:46154581-46154600 None:intergenic 30.0%
! TGACAACCACCAATTTTTAA+AGG - chr4_3:46154944-46154963 None:intergenic 30.0%
AAATGGCATACCAATAATGT+TGG + chr4_3:46155185-46155204 Msa0643320:intron 30.0%
AAATGTGAAAAAGGCAAAGA+GGG - chr4_3:46155323-46155342 None:intergenic 30.0%
! TATTAATTAGGGGCATGTTT+AGG + chr4_3:46155461-46155480 Msa0643320:intron 30.0%
ATGCATCTAGTAATCTGAAA+AGG + chr4_3:46155498-46155517 Msa0643320:intron 30.0%
! GAAACTTATGAAGCATCAAT+TGG + chr4_3:46156252-46156271 Msa0643320:intron 30.0%
CACCAATAAAGAAAAAAGGT+CGG - chr4_3:46156380-46156399 None:intergenic 30.0%
! TTCTTATGTTTTGTGAGTTG+GGG - chr4_3:46156585-46156604 None:intergenic 30.0%
! CATTCTTATGTTTTGTGAGT+TGG - chr4_3:46156587-46156606 None:intergenic 30.0%
TACTTTACAAGACCAAAAAC+GGG - chr4_3:46156654-46156673 None:intergenic 30.0%
CTACTTTACAAGACCAAAAA+CGG - chr4_3:46156655-46156674 None:intergenic 30.0%
! AAACTTATAATTTGTCCGTG+CGG - chr4_3:46156696-46156715 None:intergenic 30.0%
TTTGATCACTTTCAGTTAGA+AGG - chr4_3:46156835-46156854 None:intergenic 30.0%
!! AAGGCACTGACTTATTATAT+TGG + chr4_3:46157105-46157124 Msa0643320:intron 30.0%
GTATTAAACTGCAATTGCTT+TGG - chr4_3:46157429-46157448 None:intergenic 30.0%
AGTATGTTTGTTTGTGAGAA+AGG + chr4_3:46157603-46157622 Msa0643320:intron 30.0%
!!! AAAGGAAGGGGTTTTTTTAA+TGG + chr4_3:46157621-46157640 Msa0643320:intron 30.0%
GGGCAATAAAGGAAAATAAT+AGG - chr4_3:46157849-46157868 None:intergenic 30.0%
GAATTGATAAAGGGCAATAA+AGG - chr4_3:46157860-46157879 None:intergenic 30.0%
AGATCCAATCTTAAACCAAA+TGG - chr4_3:46158134-46158153 None:intergenic 30.0%
TGTATAAAATATGCAAGGTC+CGG + chr4_3:46158298-46158317 Msa0643320:intron 30.0%
!!! TTTTTTTTTTTGTGGTGGTC+GGG - chr4_3:46158333-46158352 None:intergenic 30.0%
AAGTAGTTAAATACACCCTA+AGG - chr4_3:46158790-46158809 None:intergenic 30.0%
! CACACCTTCTAAAAAATAAG+TGG + chr4_3:46158831-46158850 Msa0643320:intron 30.0%
!!! ACACCCACTTATTTTTTAGA+AGG - chr4_3:46158891-46158910 None:intergenic 30.0%
!!! ACACCCACTTATTTTTTAGA+AGG + chr4_3:46158891-46158910 Msa0643320:intron 30.0%
! CACACCTTCTAAAAAATAAG+TGG - chr4_3:46158831-46158850 None:intergenic 30.0%
! TTTTAGCAACATTCACCTTA+AGG + chr4_3:46158918-46158937 Msa0643320:intron 30.0%
CACACCTTAATAAAAACTAG+TGG + chr4_3:46158978-46158997 Msa0643320:intron 30.0%
!!! ACACCCACTAGTTTTTATTA+AGG - chr4_3:46158985-46159004 None:intergenic 30.0%
! ATATATATATGGGGTTTGCT+AGG - chr4_3:46159068-46159087 None:intergenic 30.0%
TTATAGCAACATACACCTTA+AGG - chr4_3:46159159-46159178 None:intergenic 30.0%
ACCTTCTAACAAAAACAAGT+GGG + chr4_3:46159182-46159201 Msa0643320:intron 30.0%
GCAAGTGAATAACTAAAAAG+TGG + chr4_3:46159273-46159292 Msa0643320:intron 30.0%
! TTTTAGCAAACTACACCTTA+GGG - chr4_3:46159308-46159327 None:intergenic 30.0%
! TCAACCGTAATTAGAGTTTT+TGG - chr4_3:46159402-46159421 None:intergenic 30.0%
AACTCTAATTACGGTTGATT+AGG + chr4_3:46159404-46159423 Msa0643320:intron 30.0%
ATGGATAATGATGAACCTTA+TGG + chr4_3:46159754-46159773 Msa0643320:CDS 30.0%
! AGCTATTTATGTTAGGGTTT+TGG + chr4_3:46159849-46159868 Msa0643320:three_prime_UTR 30.0%
! GCTATTTATGTTAGGGTTTT+GGG + chr4_3:46159850-46159869 Msa0643320:three_prime_UTR 30.0%
! CTATTTATGTTAGGGTTTTG+GGG + chr4_3:46159851-46159870 Msa0643320:three_prime_UTR 30.0%
CAAAGTCATACATACTACAA+CGG - chr4_3:46159899-46159918 None:intergenic 30.0%
ACTTTGGATTTAATCTTGCA+AGG + chr4_3:46159913-46159932 Msa0643320:three_prime_UTR 30.0%
! ATCATGGTTGTTTCATTAGC+CGG + chr4_3:46153077-46153096 Msa0643320:CDS 35.0%
TGACTAAGAACATGACAACA+AGG - chr4_3:46153148-46153167 None:intergenic 35.0%
GTTGTCATGTTCTTAGTCAT+TGG + chr4_3:46153149-46153168 Msa0643320:CDS 35.0%
TTAGTCATTGGTGTGCTTAT+TGG + chr4_3:46153161-46153180 Msa0643320:CDS 35.0%
!! CTTATGTTGTGACGGATAAA+GGG + chr4_3:46153198-46153217 Msa0643320:CDS 35.0%
GAAGAAGGGTTATGAATAGA+GGG + chr4_3:46153225-46153244 Msa0643320:CDS 35.0%
!! GGTTATGAATAGAGGGTATT+TGG + chr4_3:46153232-46153251 Msa0643320:CDS 35.0%
ATTTGCAGGATTATTCTGGT+TGG + chr4_3:46153261-46153280 Msa0643320:CDS 35.0%
!! TAAGGGATTCTAAAGCTTGT+AGG + chr4_3:46153336-46153355 Msa0643320:CDS 35.0%
!! TTCTAAAGCTTGTAGGAAGT+TGG + chr4_3:46153343-46153362 Msa0643320:CDS 35.0%
CTTGTGAATGGGTAATAATC+TGG + chr4_3:46153470-46153489 Msa0643320:intron 35.0%
!!! GGAAGGTGTTTAGGAATTTT+TGG + chr4_3:46153562-46153581 Msa0643320:intron 35.0%
! TTCTAGGAACCAGTGTAATT+AGG + chr4_3:46153604-46153623 Msa0643320:intron 35.0%
TCTAGGAACCAGTGTAATTA+GGG + chr4_3:46153605-46153624 Msa0643320:intron 35.0%
TGTCAATTAAATTGTGACGG+AGG - chr4_3:46153645-46153664 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+TGG + chr4_3:46153834-46153853 Msa0643320:intron 35.0%
AAAATGATATTAGGTCGACC+CGG + chr4_3:46154028-46154047 Msa0643320:intron 35.0%
! CCGGTAAGATCTATGAATTT+TGG + chr4_3:46154047-46154066 Msa0643320:intron 35.0%
GTCGGGTTAAACCATTTAAA+CGG - chr4_3:46154221-46154240 None:intergenic 35.0%
! TTCATCGGTTAATTTGACCT+CGG - chr4_3:46154278-46154297 None:intergenic 35.0%
!! ATTCTTAACTTGTGCCCTTA+GGG - chr4_3:46154371-46154390 None:intergenic 35.0%
!! TTTCTTAACTTGTGCCTTGA+GGG + chr4_3:46154493-46154512 Msa0643320:intron 35.0%
CCAAAATGTCAGATATTTGC+AGG - chr4_3:46154582-46154601 None:intergenic 35.0%
! CCTGCAAATATCTGACATTT+TGG + chr4_3:46154579-46154598 Msa0643320:intron 35.0%
AGGGCTAAAACAAAATACCA+AGG - chr4_3:46154671-46154690 None:intergenic 35.0%
! AAAAGTATGGGTAGTTGCTT+TGG + chr4_3:46154753-46154772 Msa0643320:intron 35.0%
GTCACATAGGTTGTCAAAAA+TGG - chr4_3:46154843-46154862 None:intergenic 35.0%
GAGAGATAAACTTGTCACAT+AGG - chr4_3:46154856-46154875 None:intergenic 35.0%
ACTTTCTCTCTCTATTGCTT+TGG + chr4_3:46154895-46154914 Msa0643320:intron 35.0%
AGGAAAAGTAGATAGTGACA+CGG - chr4_3:46154924-46154943 None:intergenic 35.0%
ATGCACCGTTAAGTTAACAT+GGG - chr4_3:46155127-46155146 None:intergenic 35.0%
AATGCACCGTTAAGTTAACA+TGG - chr4_3:46155128-46155147 None:intergenic 35.0%
AGAGGGTTTACATATAAGGA+CGG - chr4_3:46155306-46155325 None:intergenic 35.0%
GCAAAGAGGGTTTACATATA+AGG - chr4_3:46155310-46155329 None:intergenic 35.0%
GAAATGTGAAAAAGGCAAAG+AGG - chr4_3:46155324-46155343 None:intergenic 35.0%
CAAATGGGTGGTTACATATA+AGG + chr4_3:46155549-46155568 Msa0643320:intron 35.0%
ATAGGTCAAGTAATATGGGA+CGG - chr4_3:46155661-46155680 None:intergenic 35.0%
AGTCAACTAGGCAAGTAATA+TGG + chr4_3:46155875-46155894 Msa0643320:intron 35.0%
GTCAACTAGGCAAGTAATAT+GGG + chr4_3:46155876-46155895 Msa0643320:intron 35.0%
TTATGGGACAAAGAAAGTGA+TGG + chr4_3:46155923-46155942 Msa0643320:intron 35.0%
! ACAAAGAAAGTGATGGAATG+AGG + chr4_3:46155930-46155949 Msa0643320:intron 35.0%
GAAACAAGAAGATATGGTGA+TGG + chr4_3:46156095-46156114 Msa0643320:intron 35.0%
TCGGTCTCAGATAAAACTTT+GGG - chr4_3:46156228-46156247 None:intergenic 35.0%
TTCGGTCTCAGATAAAACTT+TGG - chr4_3:46156229-46156248 None:intergenic 35.0%
!!! CACCGACCTTTTTTCTTTAT+TGG + chr4_3:46156375-46156394 Msa0643320:intron 35.0%
GTCATAAAGATGGGTGTAAA+TGG - chr4_3:46156490-46156509 None:intergenic 35.0%
! GCAGAAGGTGACAAAATTTT+AGG - chr4_3:46156549-46156568 None:intergenic 35.0%
!! TCTTATGTTTTGTGAGTTGG+GGG - chr4_3:46156584-46156603 None:intergenic 35.0%
! AGAATATCTTCTCCCGTTTT+TGG + chr4_3:46156639-46156658 Msa0643320:intron 35.0%
TCAGTTAGAAGGATGTATGA+AGG - chr4_3:46156824-46156843 None:intergenic 35.0%
ACGTGTGATATCCCTTAAAA+AGG - chr4_3:46157184-46157203 None:intergenic 35.0%
TGGTCCTTTGATTATATGAG+TGG + chr4_3:46157261-46157280 Msa0643320:intron 35.0%
! AACGCCACAACATTTTTCTA+TGG + chr4_3:46157336-46157355 Msa0643320:intron 35.0%
! ACGCCACAACATTTTTCTAT+GGG + chr4_3:46157337-46157356 Msa0643320:intron 35.0%
ATACTAGTATATACTCCCTC+CGG + chr4_3:46157445-46157464 Msa0643320:intron 35.0%
TGTTTGTTTGTGAGAAAGGA+AGG + chr4_3:46157607-46157626 Msa0643320:intron 35.0%
GTTTGTTTGTGAGAAAGGAA+GGG + chr4_3:46157608-46157627 Msa0643320:intron 35.0%
TTTGTTTGTGAGAAAGGAAG+GGG + chr4_3:46157609-46157628 Msa0643320:intron 35.0%
!!! GGTTTTTTTAATGGCCTGTT+TGG + chr4_3:46157630-46157649 Msa0643320:intron 35.0%
! ACACTGTAGAGAATTGCTTT+TGG - chr4_3:46157672-46157691 None:intergenic 35.0%
!!! TCATGGAGAATTGTTTTTGG+AGG - chr4_3:46157754-46157773 None:intergenic 35.0%
! GCTTCATGGAGAATTGTTTT+TGG - chr4_3:46157757-46157776 None:intergenic 35.0%
! TTCTAGAAAAGCTAGAAGCT+AGG - chr4_3:46157787-46157806 None:intergenic 35.0%
ACAACGAATTAGTGTGTGTT+TGG - chr4_3:46158022-46158041 None:intergenic 35.0%
! TTGGTTTAAGATTGGATCTC+TGG + chr4_3:46158135-46158154 Msa0643320:intron 35.0%
! CATCGTGAGTTTAGTTCAAT+TGG + chr4_3:46158266-46158285 Msa0643320:intron 35.0%
GTATAAAATATGCAAGGTCC+GGG + chr4_3:46158299-46158318 Msa0643320:intron 35.0%
TATAAAATATGCAAGGTCCG+GGG + chr4_3:46158300-46158319 Msa0643320:intron 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG + chr4_3:46158745-46158764 Msa0643320:intron 35.0%
ACTCCCACATAAAAACTAGT+GGG - chr4_3:46159329-46159348 None:intergenic 35.0%
! TTTTAGCAAGCTACACCTTA+GGG + chr4_3:46158772-46158791 Msa0643320:intron 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG + chr4_3:46158745-46158764 Msa0643320:intron 35.0%
ACTCCCACATAAAAACTAGT+GGG - chr4_3:46159329-46159348 None:intergenic 35.0%
CACCTTCTAACAAAAACAAG+TGG + chr4_3:46159181-46159200 Msa0643320:intron 35.0%
!!! ACCCACTTGTTTTTGTTAGA+AGG - chr4_3:46159186-46159205 None:intergenic 35.0%
TGTGTTCTAGCAAATCCTAT+AGG + chr4_3:46159205-46159224 Msa0643320:intron 35.0%
GTGTTCTAGCAAATCCTATA+GGG + chr4_3:46159206-46159225 Msa0643320:intron 35.0%
TGTTCTAGCAAATCCTATAG+GGG + chr4_3:46159207-46159226 Msa0643320:intron 35.0%
AAGTGGTTAAATACACCCTA+AGG + chr4_3:46159290-46159309 Msa0643320:intron 35.0%
!! GTTTTAGCAAACTACACCTT+AGG - chr4_3:46159309-46159328 None:intergenic 35.0%
ACTCCCACATAAAAACTAGT+GGG + chr4_3:46159329-46159348 Msa0643320:intron 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG - chr4_3:46158745-46158764 None:intergenic 35.0%
GGAGCCAAAAACTCTAATTA+CGG + chr4_3:46159395-46159414 Msa0643320:intron 35.0%
AGGACAACAGTAAACATGTA+TGG - chr4_3:46159437-46159456 None:intergenic 35.0%
CAACTATGTAAACAACGACA+AGG - chr4_3:46159705-46159724 None:intergenic 35.0%
CGTTGTAGTATGTATGACTT+TGG + chr4_3:46159897-46159916 Msa0643320:three_prime_UTR 35.0%
CTATCAATTCCAATCCTAGG+AGG + chr4_3:46152972-46152991 Msa0643320:CDS 40.0%
GGCTAATGAAACAACCATGA+TGG - chr4_3:46153078-46153097 None:intergenic 40.0%
!! TTTCATTAGCCGGTTTTGCA+GGG + chr4_3:46153087-46153106 Msa0643320:CDS 40.0%
!! GCTTATGTTGTGACGGATAA+AGG + chr4_3:46153197-46153216 Msa0643320:CDS 40.0%
GGAAGAAGGGTTATGAATAG+AGG + chr4_3:46153224-46153243 Msa0643320:CDS 40.0%
AGTGGCTAGTGATGAGTATT+GGG + chr4_3:46153295-46153314 Msa0643320:CDS 40.0%
AAGAACATATCAGCAGTCTC+AGG - chr4_3:46153389-46153408 None:intergenic 40.0%
!! ATGGAGTTAGGAAGGTGTTT+AGG + chr4_3:46153553-46153572 Msa0643320:intron 40.0%
GCTAAAGACCCTAATTACAC+TGG - chr4_3:46153616-46153635 None:intergenic 40.0%
! ATGGGTCAGTTATTCTGGAA+CGG + chr4_3:46153839-46153858 Msa0643320:intron 40.0%
CTAAGTTCAACCATGATCCA+TGG + chr4_3:46154083-46154102 Msa0643320:intron 40.0%
!! TAGTGTTAACTTGTGCCCTA+AGG + chr4_3:46154353-46154372 Msa0643320:intron 40.0%
!! AGTGTTAACTTGTGCCCTAA+GGG + chr4_3:46154354-46154373 Msa0643320:intron 40.0%
!! GATTCTTAACTTGTGCCCTT+AGG - chr4_3:46154372-46154391 None:intergenic 40.0%
!! GTTTCTTAACTTGTGCCTTG+AGG + chr4_3:46154492-46154511 Msa0643320:intron 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG - chr4_3:46154510-46154529 None:intergenic 40.0%
TAGATCTGACTCTTGCAGTA+TGG + chr4_3:46155017-46155036 Msa0643320:intron 40.0%
TCGTCAATCTCCTAAAGTTG+TGG + chr4_3:46155074-46155093 Msa0643320:intron 40.0%
GCATCCCCATGTTAACTTAA+CGG + chr4_3:46155119-46155138 Msa0643320:intron 40.0%
TGCACCGTTAAGTTAACATG+GGG - chr4_3:46155126-46155145 None:intergenic 40.0%
AGGGTTTACATATAAGGACG+GGG - chr4_3:46155304-46155323 None:intergenic 40.0%
GAGGGTTTACATATAAGGAC+GGG - chr4_3:46155305-46155324 None:intergenic 40.0%
TGGGTGGTTACATATAAGGA+CGG + chr4_3:46155553-46155572 Msa0643320:intron 40.0%
ACTAGGCAAGTAATATGGGA+CGG + chr4_3:46155880-46155899 Msa0643320:intron 40.0%
! AGAAAGTGATGGAATGAGGT+AGG + chr4_3:46155934-46155953 Msa0643320:intron 40.0%
! GAAAGTGATGGAATGAGGTA+GGG + chr4_3:46155935-46155954 Msa0643320:intron 40.0%
ATCCATTATAGGGTGAAACG+TGG - chr4_3:46155978-46155997 None:intergenic 40.0%
!! ACAAGAAGATATGGTGATGG+AGG + chr4_3:46156098-46156117 Msa0643320:intron 40.0%
CCTGCCACTCATATAATCAA+AGG - chr4_3:46157268-46157287 None:intergenic 40.0%
CCTTTGATTATATGAGTGGC+AGG + chr4_3:46157265-46157284 Msa0643320:intron 40.0%
GTAATCCATGCCACAAAACA+AGG + chr4_3:46157300-46157319 Msa0643320:intron 40.0%
! CGCCACAACATTTTTCTATG+GGG + chr4_3:46157338-46157357 Msa0643320:intron 40.0%
TGCCCCATAGAAAAATGTTG+TGG - chr4_3:46157343-46157362 None:intergenic 40.0%
TGTAGTAGTCTAATAGCGAC+AGG + chr4_3:46157365-46157384 Msa0643320:intron 40.0%
GTAGTAGTCTAATAGCGACA+GGG + chr4_3:46157366-46157385 Msa0643320:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG - chr4_3:46157580-46157599 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG - chr4_3:46157579-46157598 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG + chr4_3:46157579-46157598 Msa0643320:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG + chr4_3:46157580-46157599 Msa0643320:intron 40.0%
ACAAACAAACATACTCCCTC+CGG - chr4_3:46157598-46157617 None:intergenic 40.0%
!! GTAGAGAATTGCTTTTGGCT+GGG - chr4_3:46157667-46157686 None:intergenic 40.0%
!! TGTAGAGAATTGCTTTTGGC+TGG - chr4_3:46157668-46157687 None:intergenic 40.0%
! CGATGTTTGTTAGCACAGTT+TGG + chr4_3:46158434-46158453 Msa0643320:intron 40.0%
TAAGACACTGAAGAAGGCAA+GGG - chr4_3:46158624-46158643 None:intergenic 40.0%
ATAAGACACTGAAGAAGGCA+AGG - chr4_3:46158625-46158644 None:intergenic 40.0%
!!! CACACCCACTAGTTTTTATG+TGG + chr4_3:46158744-46158763 Msa0643320:intron 40.0%
CACTCCCACATAAAAACTAG+TGG - chr4_3:46159328-46159347 None:intergenic 40.0%
!! GTTTTAGCAAGCTACACCTT+AGG + chr4_3:46158771-46158790 Msa0643320:intron 40.0%
GTATCCTAGCAAATGCCTAT+AGG + chr4_3:46158856-46158875 Msa0643320:intron 40.0%
AACTCCTATAGGCATTTGCT+AGG - chr4_3:46158863-46158882 None:intergenic 40.0%
TGTACGTTAGCAACTCCTAT+AGG - chr4_3:46158874-46158893 None:intergenic 40.0%
!!! CACACCCACTAGTTTTTATG+TGG + chr4_3:46158744-46158763 Msa0643320:intron 40.0%
CACTCCCACATAAAAACTAG+TGG - chr4_3:46159328-46159347 None:intergenic 40.0%
! AAATCCTATAGGGGTTTGCT+AGG + chr4_3:46159216-46159235 Msa0643320:intron 40.0%
CACTCCCACATAAAAACTAG+TGG + chr4_3:46159328-46159347 Msa0643320:intron 40.0%
!!! CACACCCACTAGTTTTTATG+TGG - chr4_3:46158744-46158763 None:intergenic 40.0%
TACGAATAGCCACAATCTGT+TGG - chr4_3:46159496-46159515 None:intergenic 40.0%
CGTATCAAAACGAGACAGTA+TGG + chr4_3:46159512-46159531 Msa0643320:CDS 40.0%
AACGAGACAGTATGGATTCA+AGG + chr4_3:46159520-46159539 Msa0643320:CDS 40.0%
! TGTTCCATTTGTTGCAGTCA+GGG - chr4_3:46159570-46159589 None:intergenic 40.0%
! TTGTTCCATTTGTTGCAGTC+AGG - chr4_3:46159571-46159590 None:intergenic 40.0%
GATTGTGATTCTTGCAAAGC+TGG + chr4_3:46159613-46159632 Msa0643320:CDS 40.0%
! TTGGTAGTCTCAAGAAGAGT+TGG + chr4_3:46159641-46159660 Msa0643320:CDS 40.0%
ATGAACCTTATGGTGAAGCA+AGG + chr4_3:46159764-46159783 Msa0643320:CDS 40.0%
!!! TATGTTAGGGTTTTGGGGAT+TGG + chr4_3:46159856-46159875 Msa0643320:three_prime_UTR 40.0%
TCAATTCCAATCCTAGGAGG+TGG + chr4_3:46152975-46152994 Msa0643320:CDS 45.0%
CATATTCCACCTCCTAGGAT+TGG - chr4_3:46152984-46153003 None:intergenic 45.0%
CAATCCTAGGAGGTGGAATA+TGG + chr4_3:46152982-46153001 Msa0643320:CDS 45.0%
TTAGCCATATTCCACCTCCT+AGG - chr4_3:46152989-46153008 None:intergenic 45.0%
!! GTTTCATTAGCCGGTTTTGC+AGG + chr4_3:46153086-46153105 Msa0643320:CDS 45.0%
!! TTCATTAGCCGGTTTTGCAG+GGG + chr4_3:46153088-46153107 Msa0643320:CDS 45.0%
GGATAAAGGGTCTGGAAGAA+GGG + chr4_3:46153211-46153230 Msa0643320:CDS 45.0%
! GCAGGATTATTCTGGTTGGT+TGG + chr4_3:46153265-46153284 Msa0643320:CDS 45.0%
GAGTGGCTAGTGATGAGTAT+TGG + chr4_3:46153294-46153313 Msa0643320:CDS 45.0%
! GTGGCTAGTGATGAGTATTG+GGG + chr4_3:46153296-46153315 Msa0643320:CDS 45.0%
!! TGGCTAGTGATGAGTATTGG+GGG + chr4_3:46153297-46153316 Msa0643320:CDS 45.0%
AAGCTTGTAGGAAGTTGGCT+AGG + chr4_3:46153348-46153367 Msa0643320:CDS 45.0%
!! GTCAGTTATTCTGGAACGGA+GGG + chr4_3:46153843-46153862 Msa0643320:intron 45.0%
GGGTTTACATATAAGGACGG+GGG - chr4_3:46155303-46155322 None:intergenic 45.0%
GTGGTTACATATAAGGACGG+AGG + chr4_3:46155556-46155575 Msa0643320:intron 45.0%
GTCAAGTAATATGGGACGGA+GGG - chr4_3:46155657-46155676 None:intergenic 45.0%
CATACGTGACAGAGTCAACT+AGG + chr4_3:46155863-46155882 Msa0643320:intron 45.0%
GGGAGCTTGTAAAAAGCAGA+AGG - chr4_3:46156564-46156583 None:intergenic 45.0%
ATATGAGTGGCAGGACATGT+CGG + chr4_3:46157274-46157293 Msa0643320:intron 45.0%
!!! TCAAAAGCGGCCTTGTTTTG+TGG - chr4_3:46157313-46157332 None:intergenic 45.0%
!!! CAAAACAAGGCCGCTTTTGA+TGG + chr4_3:46157313-46157332 Msa0643320:intron 45.0%
TTGTGGCGTTCCATCAAAAG+CGG - chr4_3:46157326-46157345 None:intergenic 45.0%
TAGATGCTCTATAGTCGCAG+AGG - chr4_3:46158473-46158492 None:intergenic 45.0%
AAGACACTGAAGAAGGCAAG+GGG - chr4_3:46158623-46158642 None:intergenic 45.0%
GTATCCTAGCAAACCCCTAT+AGG - chr4_3:46159223-46159242 None:intergenic 45.0%
GAATAGCCACAATCTGTTGG+AGG - chr4_3:46159493-46159512 None:intergenic 45.0%
ACAGTATGGATTCAAGGAGC+AGG + chr4_3:46159526-46159545 Msa0643320:CDS 45.0%
TCTTGCAAAGCTGGTGTACT+TGG + chr4_3:46159622-46159641 Msa0643320:CDS 45.0%
GTAGTCTCAAGAAGAGTTGG+AGG + chr4_3:46159644-46159663 Msa0643320:CDS 45.0%
GTCATCCTTGCTTCACCATA+AGG - chr4_3:46159772-46159791 None:intergenic 45.0%
!!! ATTTAATTTATTTTAACATA+TGG - chr4_3:46154123-46154142 None:intergenic 5.0%
!! ATTAATTATGTTTATAAAAT+GGG - chr4_3:46154534-46154553 None:intergenic 5.0%
!! AATTAATTATGTTTATAAAA+TGG - chr4_3:46154535-46154554 None:intergenic 5.0%
!!! TTATAAACATAATTAATTTT+AGG + chr4_3:46154537-46154556 Msa0643320:intron 5.0%
!!! ATATATTTATGATTTTTTTT+AGG + chr4_3:46157059-46157078 Msa0643320:intron 5.0%
!!! TATATTTATGATTTTTTTTA+GGG + chr4_3:46157060-46157079 Msa0643320:intron 5.0%
!! TATATATATATATATATATG+GGG - chr4_3:46159059-46159078 None:intergenic 5.0%
!! TATATATATATATATATATG+GGG + chr4_3:46159059-46159078 Msa0643320:intron 5.0%
!! GTTGTGACGGATAAAGGGTC+TGG + chr4_3:46153203-46153222 Msa0643320:CDS 50.0%
CGGATAAAGGGTCTGGAAGA+AGG + chr4_3:46153210-46153229 Msa0643320:CDS 50.0%
! TGGTTGGTTGGAAGAGAGAG+TGG + chr4_3:46153277-46153296 Msa0643320:CDS 50.0%
!! GGTCAGTTATTCTGGAACGG+AGG + chr4_3:46153842-46153861 Msa0643320:intron 50.0%
TATGGAACCCTGCAGCATGT+GGG + chr4_3:46155035-46155054 Msa0643320:intron 50.0%
GGTCAAGTAATATGGGACGG+AGG - chr4_3:46155658-46155677 None:intergenic 50.0%
AGGCAAGTAATATGGGACGG+AGG + chr4_3:46155883-46155902 Msa0643320:intron 50.0%
GGCAAGTAATATGGGACGGA+GGG + chr4_3:46155884-46155903 Msa0643320:intron 50.0%
TGGAATGAGGTAGGGCCATA+TGG + chr4_3:46155943-46155962 Msa0643320:intron 50.0%
GGAATGAGGTAGGGCCATAT+GGG + chr4_3:46155944-46155963 Msa0643320:intron 50.0%
GAATGAGGTAGGGCCATATG+GGG + chr4_3:46155945-46155964 Msa0643320:intron 50.0%
GGCCACGTTTCACCCTATAA+TGG + chr4_3:46155973-46155992 Msa0643320:intron 50.0%
TACTTATGAATGGGGCCGCA+CGG + chr4_3:46156678-46156697 Msa0643320:intron 50.0%
GGGTAGAAGCTGAACCAAAC+AGG - chr4_3:46157647-46157666 None:intergenic 50.0%
ATTACCCCTGAACCGTACCT+CGG + chr4_3:46158579-46158598 Msa0643320:intron 50.0%
TGCAAGCCTCCAACAGATTG+TGG + chr4_3:46159484-46159503 Msa0643320:CDS 50.0%
TCAAGGAGCAGGATCACTAG+TGG + chr4_3:46159537-46159556 Msa0643320:CDS 50.0%
CAAGGAGCAGGATCACTAGT+GGG + chr4_3:46159538-46159557 Msa0643320:CDS 50.0%
! CCATTTGTTGCAGTCAGGGT+TGG - chr4_3:46159566-46159585 None:intergenic 50.0%
CCAACCCTGACTGCAACAAA+TGG + chr4_3:46159563-46159582 Msa0643320:CDS 50.0%
GTAACACGCCCCTGCAAAAC+CGG - chr4_3:46153099-46153118 None:intergenic 55.0%
GTATGGAACCCTGCAGCATG+TGG + chr4_3:46155034-46155053 Msa0643320:intron 55.0%
ATGGAACCCTGCAGCATGTG+GGG + chr4_3:46155036-46155055 Msa0643320:intron 55.0%
CATCATCCCCACATGCTGCA+GGG - chr4_3:46155045-46155064 None:intergenic 55.0%
CTGCAGCATGTGGGGATGAT+GGG + chr4_3:46155044-46155063 Msa0643320:intron 55.0%
!!! AGCGGCCTTGTTTTGTGGCA+TGG - chr4_3:46157308-46157327 None:intergenic 55.0%
TTACCCCTGAACCGTACCTC+GGG + chr4_3:46158580-46158599 Msa0643320:intron 55.0%
CCATCATCCCCACATGCTGC+AGG - chr4_3:46155046-46155065 None:intergenic 60.0%
CCTGCAGCATGTGGGGATGA+TGG + chr4_3:46155043-46155062 Msa0643320:intron 60.0%
GAGGTAGGGCCATATGGGGA+CGG + chr4_3:46155949-46155968 Msa0643320:intron 60.0%
!!! GGTGGTCGGGTTTTGAACCC+CGG - chr4_3:46158320-46158339 None:intergenic 60.0%
TGAAGAAGGCAAGGGGCGAC+GGG - chr4_3:46158616-46158635 None:intergenic 60.0%
CTGAAGAAGGCAAGGGGCGA+CGG - chr4_3:46158617-46158636 None:intergenic 60.0%
GTAGGGCCATATGGGGACGG+TGG + chr4_3:46155952-46155971 Msa0643320:intron 65.0%
ACGTGGCCACCGTCCCCATA+TGG - chr4_3:46155961-46155980 None:intergenic 65.0%
GGTCCCGAGGTACGGTTCAG+GGG - chr4_3:46158586-46158605 None:intergenic 65.0%
GGGTCCCGAGGTACGGTTCA+GGG - chr4_3:46158587-46158606 None:intergenic 65.0%
GAAGAAGGCAAGGGGCGACG+GGG - chr4_3:46158615-46158634 None:intergenic 65.0%
GGGGTCCCGAGGTACGGTTC+AGG - chr4_3:46158588-46158607 None:intergenic 70.0%
GGTGTGGGGGTCCCGAGGTA+CGG - chr4_3:46158594-46158613 None:intergenic 70.0%
CAAGGGGCGACGGGGTGTGG+GGG - chr4_3:46158607-46158626 None:intergenic 75.0%
GCAAGGGGCGACGGGGTGTG+GGG - chr4_3:46158608-46158627 None:intergenic 75.0%
GGCAAGGGGCGACGGGGTGT+GGG - chr4_3:46158609-46158628 None:intergenic 75.0%
AGGCAAGGGGCGACGGGGTG+TGG - chr4_3:46158610-46158629 None:intergenic 75.0%
! GACGGGGTGTGGGGGTCCCG+AGG - chr4_3:46158599-46158618 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 46152782 46160046 46152782 ID=Msa0643320;Name=Msa0643320
chr4_3 mRNA 46152782 46160046 46152782 ID=Msa0643320-mRNA-1;Parent=Msa0643320;Name=Msa0643320-mRNA-1;_AED=0.02;_eAED=0.02;_QI=139|1|1|1|1|1|2|224|286
chr4_3 exon 46152782 46153433 46152782 ID=Msa0643320-mRNA-1:exon:10665;Parent=Msa0643320-mRNA-1
chr4_3 exon 46159475 46160046 46159475 ID=Msa0643320-mRNA-1:exon:10666;Parent=Msa0643320-mRNA-1
chr4_3 five_prime_UTR 46152782 46152920 46152782 ID=Msa0643320-mRNA-1:five_prime_utr;Parent=Msa0643320-mRNA-1
chr4_3 CDS 46152921 46153433 46152921 ID=Msa0643320-mRNA-1:cds;Parent=Msa0643320-mRNA-1
chr4_3 CDS 46159475 46159822 46159475 ID=Msa0643320-mRNA-1:cds;Parent=Msa0643320-mRNA-1
chr4_3 three_prime_UTR 46159823 46160046 46159823 ID=Msa0643320-mRNA-1:three_prime_utr;Parent=Msa0643320-mRNA-1
Gene Sequence

>Msa0643320

ATGAGAACAAGTAACCACTTAATTGGTCTACTAAACTTCTTAACCTTTTTACTATCAATTCCAATCCTAGGAGGTGGAATATGGCTAAGCAGTAGAGCAAACAACACAGATTGTCTCAAATTTCTTCAATGGCCATTAATCATAATAGGAATTTCCATCATGGTTGTTTCATTAGCCGGTTTTGCAGGGGCGTGTTACCGTAACACTTTCTTGTTACGTTTCTACCTTGTTGTCATGTTCTTAGTCATTGGTGTGCTTATTGGATTTATAATATTTGCTTATGTTGTGACGGATAAAGGGTCTGGAAGAAGGGTTATGAATAGAGGGTATTTGGATTATTATTTGCAGGATTATTCTGGTTGGTTGGAAGAGAGAGTGGCTAGTGATGAGTATTGGGGGAAGATTAGTTCTTGTATAAGGGATTCTAAAGCTTGTAGGAAGTTGGCTAGGAATTTTAATGATGTTCCTGAGACTGCTGATATGTTCTTTCAAAGAAAACTCAATCCTATTCAGTCTGGTTGCTGCAAGCCTCCAACAGATTGTGGCTATTCGTATCAAAACGAGACAGTATGGATTCAAGGAGCAGGATCACTAGTGGGAACCAACCCTGACTGCAACAAATGGAACAATGACCAACAACAACTTTGTTATGATTGTGATTCTTGCAAAGCTGGTGTACTTGGTAGTCTCAAGAAGAGTTGGAGGAAAGTCTCAGTGATCAATATTGTTGTTATGATCATCCTTGTCGTTGTTTACATAGTTGCATATTATGCATATCGAAACAACAAAAAGATGGATAATGATGAACCTTATGGTGAAGCAAGGATGACAAAGTCACAACCTAGTGCTTTTCATCTTTAA
Protein sequence

>Msa0643320

MRTSNHLIGLLNFLTFLLSIPILGGGIWLSSRANNTDCLKFLQWPLIIIGISIMVVSLAGFAGACYRNTFLLRFYLVVMFLVIGVLIGFIIFAYVVTDKGSGRRVMNRGYLDYYLQDYSGWLEERVASDEYWGKISSCIRDSKACRKLARNFNDVPETADMFFQRKLNPIQSGCCKPPTDCGYSYQNETVWIQGAGSLVGTNPDCNKWNNDQQQLCYDCDSCKAGVLGSLKKSWRKVSVINIVVMIILVVVYIVAYYAYRNNKKMDNDEPYGEARMTKSQPSAFHL*